Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014044.01.T01 | AWW91841.1 | 99.394 | 165 | 1 | 0 | 1 | 165 | 1 | 165 | 5.86E-114 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014044.01.T01 | A0A398 | 96.575 | 146 | 5 | 0 | 20 | 165 | 131 | 276 | 1.28E-97 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014044.01.T01 | A0A2Z4KH21 | 99.394 | 165 | 1 | 0 | 1 | 165 | 1 | 165 | 2.80e-114 | 330 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048689.01 | MsG0380014044.01 | 0.807488 | 4.931854e-50 | 2.750624e-47 |
| MsG0080048698.01 | MsG0380014044.01 | 0.853181 | 2.830750e-61 | 6.063805e-58 |
| MsG0080048699.01 | MsG0380014044.01 | 0.817137 | 3.853739e-52 | 2.783488e-49 |
| MsG0180002226.01 | MsG0380014044.01 | 0.819870 | 9.255448e-53 | 7.208685e-50 |
| MsG0180002435.01 | MsG0380014044.01 | 0.824432 | 8.099266e-54 | 7.172254e-51 |
| MsG0380013888.01 | MsG0380014044.01 | 0.819896 | 9.128472e-53 | 7.115185e-50 |
| MsG0380013916.01 | MsG0380014044.01 | 0.848880 | 4.621979e-60 | 8.605160e-57 |
| MsG0380013917.01 | MsG0380014044.01 | 0.856452 | 3.186568e-62 | 7.609763e-59 |
| MsG0380013918.01 | MsG0380014044.01 | 0.860917 | 1.478351e-63 | 4.108006e-60 |
| MsG0380013920.01 | MsG0380014044.01 | 0.879757 | 9.599152e-70 | 5.268324e-66 |
| MsG0380013923.01 | MsG0380014044.01 | 0.849086 | 4.052228e-60 | 7.595322e-57 |
| MsG0380013926.01 | MsG0380014044.01 | 0.818385 | 2.015431e-52 | 1.506522e-49 |
| MsG0380013929.01 | MsG0380014044.01 | 0.803946 | 2.733957e-49 | 1.392036e-46 |
| MsG0380013931.01 | MsG0380014044.01 | 0.851039 | 1.150153e-60 | 2.297884e-57 |
| MsG0380013932.01 | MsG0380014044.01 | 0.870440 | 1.457138e-66 | 5.668523e-63 |
| MsG0380013941.01 | MsG0380014044.01 | 0.814241 | 1.703107e-51 | 1.136694e-48 |
| MsG0380013942.01 | MsG0380014044.01 | 0.846957 | 1.566754e-59 | 2.742218e-56 |
| MsG0380013944.01 | MsG0380014044.01 | 0.889721 | 1.879476e-73 | 1.534135e-69 |
| MsG0380013947.01 | MsG0380014044.01 | 0.813813 | 2.116294e-51 | 1.396191e-48 |
| MsG0380013948.01 | MsG0380014044.01 | 0.843814 | 1.111600e-58 | 1.759803e-55 |
| MsG0380013949.01 | MsG0380014044.01 | 0.855924 | 4.550623e-62 | 1.067773e-58 |
| MsG0380013950.01 | MsG0380014044.01 | 0.849749 | 2.647969e-60 | 5.070865e-57 |
| MsG0380013951.01 | MsG0380014044.01 | 0.822155 | 2.756180e-53 | 2.288233e-50 |
| MsG0380013952.01 | MsG0380014044.01 | 0.854916 | 8.945208e-62 | 2.029576e-58 |
| MsG0380013959.01 | MsG0380014044.01 | 0.872830 | 2.351938e-67 | 9.983153e-64 |
| MsG0380013961.01 | MsG0380014044.01 | 0.811667 | 6.243716e-51 | 3.888007e-48 |
| MsG0380013962.01 | MsG0380014044.01 | 0.805561 | 1.258198e-49 | 6.677356e-47 |
| MsG0380013964.01 | MsG0380014044.01 | 0.844956 | 5.483426e-59 | 8.998418e-56 |
| MsG0380013966.01 | MsG0380014044.01 | 0.810371 | 1.191609e-50 | 7.170024e-48 |
| MsG0380013968.01 | MsG0380014044.01 | 0.815359 | 9.628362e-52 | 6.623853e-49 |
| MsG0380013969.01 | MsG0380014044.01 | 0.858267 | 9.264370e-63 | 2.350740e-59 |
| MsG0380013972.01 | MsG0380014044.01 | 0.884800 | 1.407342e-71 | 9.416457e-68 |
| MsG0380013981.01 | MsG0380014044.01 | 0.896791 | 2.626621e-76 | 2.885105e-72 |
| MsG0380013983.01 | MsG0380014044.01 | 0.831507 | 1.604919e-55 | 1.745237e-52 |
| MsG0380013988.01 | MsG0380014044.01 | 0.826544 | 2.559252e-54 | 2.407271e-51 |
| MsG0380013995.01 | MsG0380014044.01 | 0.885363 | 8.673985e-72 | 5.937426e-68 |
| MsG0380014008.01 | MsG0380014044.01 | 0.904975 | 6.990774e-80 | 1.107246e-75 |
| MsG0380014009.01 | MsG0380014044.01 | 0.857970 | 1.135385e-62 | 2.852832e-59 |
| MsG0380014011.01 | MsG0380014044.01 | 0.958181 | 4.440901e-116 | 1.611878e-110 |
| MsG0380014018.01 | MsG0380014044.01 | 0.808603 | 2.856057e-50 | 1.640011e-47 |
| MsG0380014026.01 | MsG0380014044.01 | 0.811736 | 6.030798e-51 | 3.762635e-48 |
| MsG0380014027.01 | MsG0380014044.01 | 0.830336 | 3.110571e-55 | 3.267637e-52 |
| MsG0380014035.01 | MsG0380014044.01 | 0.845973 | 2.906395e-59 | 4.928394e-56 |
| MsG0380014036.01 | MsG0380014044.01 | 0.882572 | 9.312284e-71 | 5.701167e-67 |
| MsG0380014039.01 | MsG0380014044.01 | 0.853479 | 2.326373e-61 | 5.033393e-58 |
| MsG0380014040.01 | MsG0380014044.01 | 0.888404 | 6.086838e-73 | 4.709176e-69 |
| MsG0380014041.01 | MsG0380014044.01 | 0.861840 | 7.730689e-64 | 2.217001e-60 |
| MsG0380014044.01 | MsG0380014051.01 | 0.838636 | 2.556642e-57 | 3.445295e-54 |
| MsG0380014044.01 | MsG0380014055.01 | 0.853679 | 2.037777e-61 | 4.438496e-58 |
| MsG0380014044.01 | MsG0380014057.01 | 0.948268 | 1.321771e-106 | 2.443775e-101 |
| MsG0380014044.01 | MsG0380017006.01 | 0.827106 | 1.879003e-54 | 1.796421e-51 |
| MsG0380014044.01 | MsG0380017007.01 | 0.858471 | 8.053325e-63 | 2.057634e-59 |
| MsG0380014044.01 | MsG0780040316.01 | 0.868136 | 8.168985e-66 | 2.923310e-62 |
| MsG0380014044.01 | MsG0780040317.01 | 0.838527 | 2.727294e-57 | 3.662855e-54 |
| MsG0380014044.01 | MsG0880044440.01 | 0.813737 | 2.200203e-51 | 1.448547e-48 |
| MsG0280007042.01 | MsG0380014044.01 | 0.846015 | 2.831743e-59 | 4.808078e-56 |
| MsG0280010145.01 | MsG0380014044.01 | 0.830636 | 2.627178e-55 | 2.784039e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014044.01.T01 | MTR_3g035710 | 100.000 | 142 | 0 | 0 | 24 | 165 | 1 | 142 | 5.67e-99 | 281 |
| MsG0380014044.01.T01 | MTR_4g051430 | 87.273 | 165 | 1 | 1 | 1 | 165 | 238 | 382 | 9.09e-95 | 280 |
| MsG0380014044.01.T01 | MTR_0002s0800 | 87.970 | 133 | 16 | 0 | 30 | 162 | 1 | 133 | 2.56e-82 | 242 |
| MsG0380014044.01.T01 | MTR_0002s0360 | 87.970 | 133 | 16 | 0 | 30 | 162 | 1 | 133 | 2.56e-82 | 242 |
| MsG0380014044.01.T01 | MTR_3g037420 | 92.366 | 131 | 9 | 1 | 35 | 165 | 7 | 136 | 5.12e-80 | 233 |
| MsG0380014044.01.T01 | MTR_8g102110 | 94.000 | 100 | 6 | 0 | 33 | 132 | 13 | 112 | 8.06e-60 | 182 |
| MsG0380014044.01.T01 | MTR_4g127750 | 89.189 | 74 | 8 | 0 | 1 | 74 | 67 | 140 | 2.47e-40 | 134 |
| MsG0380014044.01.T01 | MTR_2g015360 | 52.713 | 129 | 55 | 3 | 22 | 145 | 58 | 185 | 4.47e-34 | 119 |
| MsG0380014044.01.T01 | MTR_4g047905 | 97.872 | 47 | 1 | 0 | 24 | 70 | 1 | 47 | 5.26e-24 | 90.5 |
| MsG0380014044.01.T01 | MTR_0082s0210 | 88.372 | 43 | 5 | 0 | 59 | 101 | 34 | 76 | 2.84e-17 | 72.4 |
| MsG0380014044.01.T01 | MTR_7g076940 | 40.367 | 109 | 58 | 3 | 24 | 125 | 107 | 215 | 2.86e-16 | 73.9 |
| MsG0380014044.01.T01 | MTR_5g021800 | 39.815 | 108 | 58 | 3 | 24 | 124 | 107 | 214 | 6.75e-16 | 73.2 |
| MsG0380014044.01.T01 | MTR_8g038480 | 90.323 | 31 | 3 | 0 | 132 | 162 | 14 | 44 | 3.19e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014044.01.T01 | ATCG00830 | 93.750 | 144 | 9 | 0 | 22 | 165 | 131 | 274 | 8.48e-93 | 271 |
| MsG0380014044.01.T01 | ATCG01310 | 93.750 | 144 | 9 | 0 | 22 | 165 | 131 | 274 | 8.48e-93 | 271 |
| MsG0380014044.01.T01 | AT2G44065 | 49.206 | 126 | 60 | 2 | 24 | 145 | 68 | 193 | 3.40e-32 | 114 |
| MsG0380014044.01.T01 | AT2G44065 | 49.206 | 126 | 60 | 2 | 24 | 145 | 68 | 193 | 3.40e-32 | 114 |
| MsG0380014044.01.T01 | AT2G44065 | 49.206 | 126 | 60 | 2 | 24 | 145 | 68 | 193 | 3.40e-32 | 114 |
| MsG0380014044.01.T01 | AT3G51190 | 45.872 | 109 | 52 | 3 | 23 | 124 | 107 | 215 | 1.18e-19 | 83.2 |
| MsG0380014044.01.T01 | AT2G18020 | 43.519 | 108 | 54 | 3 | 24 | 124 | 107 | 214 | 3.97e-17 | 76.3 |
| MsG0380014044.01.T01 | AT4G36130 | 40.909 | 110 | 58 | 3 | 23 | 125 | 106 | 215 | 1.06e-16 | 75.1 |
Find 48 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGAAGCTTGTACAGTT+TGG | 0.310568 | 3:-48721411 | MsG0380014044.01.T01:CDS |
| GGAAGAAGCTTGTACAGTTT+GGG | 0.364882 | 3:-48721410 | MsG0380014044.01.T01:CDS |
| TGTTATTTCTATGTTATGTA+TGG | 0.373684 | 3:+48721327 | MsG0380014043.01.T01:CDS |
| CCACCATGTGGATGGTCTAC+AGG | 0.374827 | 3:+48721067 | MsG0380014043.01.T01:CDS |
| GTTATGTATGGCCGTGCCTA+AGG | 0.403150 | 3:+48721339 | MsG0380014043.01.T01:CDS |
| GCAACATTAAAATTACCTTC+TGG | 0.409057 | 3:-48721232 | MsG0380014044.01.T01:CDS |
| CTACTTCTTCTTCCAAGTGC+AGG | 0.444988 | 3:+48720989 | None:intergenic |
| GATTGCAAAAGAGGGGAAAT+CGG | 0.451584 | 3:-48721254 | MsG0380014044.01.T01:CDS |
| CCTTGGGGTTATCCTGCACT+TGG | 0.490373 | 3:-48721001 | MsG0380014044.01.T01:CDS |
| CATCCACATGGTGGTGGTGA+AGG | 0.493903 | 3:-48721058 | MsG0380014044.01.T01:CDS |
| AGCGAAACTGATTGCAAAAG+AGG | 0.500228 | 3:-48721263 | MsG0380014044.01.T01:CDS |
| ACCTAACCAACGTTTAGCTC+CGG | 0.500488 | 3:+48721123 | MsG0380014043.01.T01:CDS |
| GGATAACCCCAAGGAGTTGA+GGG | 0.501467 | 3:+48721010 | None:intergenic |
| AGCTTGTACAGTTTGGGAAG+GGG | 0.511574 | 3:-48721404 | MsG0380014044.01.T01:CDS |
| ACATGGTGGTGGTGAAGGGA+GGG | 0.520822 | 3:-48721053 | MsG0380014044.01.T01:CDS |
| CATAGAAATAACACTTGGAA+AGG | 0.521855 | 3:-48721317 | MsG0380014044.01.T01:CDS |
| GCCGGAGCTAAACGTTGGTT+AGG | 0.522087 | 3:-48721124 | MsG0380014044.01.T01:CDS |
| CACATGGTGGTGGTGAAGGG+AGG | 0.525514 | 3:-48721054 | MsG0380014044.01.T01:CDS |
| CTTCACCACCACCATGTGGA+TGG | 0.526187 | 3:+48721059 | MsG0380014043.01.T01:CDS |
| ATAACTACTCCTCTTACTAC+AGG | 0.526817 | 3:+48721094 | MsG0380014043.01.T01:CDS |
| CACCATGTGGATGGTCTACA+GGG | 0.532724 | 3:+48721068 | MsG0380014043.01.T01:CDS |
| GGTAAGCGTCCTGTAGTAAG+AGG | 0.536554 | 3:-48721103 | MsG0380014044.01.T01:CDS |
| ATAGAAATAACACTTGGAAA+GGG | 0.539892 | 3:-48721316 | MsG0380014044.01.T01:CDS |
| TCAGCAACAGTAGGACAAGT+AGG | 0.541112 | 3:-48721181 | MsG0380014044.01.T01:CDS |
| GGTGAAGGGAGGGCCCCGAT+TGG | 0.541114 | 3:-48721043 | MsG0380014044.01.T01:CDS |
| GGCCGTGCCTAAGGGCATAT+CGG | 0.541386 | 3:+48721348 | MsG0380014043.01.T01:CDS |
| GGACAATTAGCTAGAGCAGC+TGG | 0.543739 | 3:-48721292 | MsG0380014044.01.T01:CDS |
| ATCCACATGGTGGTGGTGAA+GGG | 0.544348 | 3:-48721057 | MsG0380014044.01.T01:CDS |
| TTATGTATGGCCGTGCCTAA+GGG | 0.546055 | 3:+48721340 | MsG0380014043.01.T01:CDS |
| GTAGGACAAGTAGGGAATGT+TGG | 0.550877 | 3:-48721172 | MsG0380014044.01.T01:CDS |
| AAGCTTGTACAGTTTGGGAA+GGG | 0.552657 | 3:-48721405 | MsG0380014044.01.T01:CDS |
| GCGAAACTGATTGCAAAAGA+GGG | 0.554830 | 3:-48721262 | MsG0380014044.01.T01:CDS |
| ATTAAAATTACCTTCTGGAG+AGG | 0.560627 | 3:-48721227 | MsG0380014044.01.T01:CDS |
| GAAATAACACTTGGAAAGGG+TGG | 0.563823 | 3:-48721313 | MsG0380014044.01.T01:CDS |
| CATAACATAGAAATAACACT+TGG | 0.566932 | 3:-48721322 | MsG0380014044.01.T01:CDS |
| AGGATAACCCCAAGGAGTTG+AGG | 0.567413 | 3:+48721009 | None:intergenic |
| AACCGATATGCCCTTAGGCA+CGG | 0.569174 | 3:-48721350 | MsG0380014044.01.T01:CDS |
| GAAGCTTGTACAGTTTGGGA+AGG | 0.581877 | 3:-48721406 | MsG0380014044.01.T01:CDS |
| CTCCCTTCACCACCACCATG+TGG | 0.585580 | 3:+48721055 | MsG0380014043.01.T01:CDS |
| CAGCAACAGTAGGACAAGTA+GGG | 0.586255 | 3:-48721180 | MsG0380014044.01.T01:CDS |
| ATCAAACGGACCTCTCCAGA+AGG | 0.618237 | 3:+48721217 | MsG0380014043.01.T01:CDS |
| ACTTCAACCGATATGCCCTT+AGG | 0.622846 | 3:-48721355 | MsG0380014044.01.T01:CDS |
| GTAGACCATCCACATGGTGG+TGG | 0.631075 | 3:-48721064 | MsG0380014044.01.T01:CDS |
| CGAAACTGATTGCAAAAGAG+GGG | 0.648445 | 3:-48721261 | MsG0380014044.01.T01:CDS |
| GCAGAGCCGGAGCTAAACGT+TGG | 0.663271 | 3:-48721129 | MsG0380014044.01.T01:CDS |
| CCAAGTGCAGGATAACCCCA+AGG | 0.680892 | 3:+48721001 | None:intergenic |
| AACCCTGTAGACCATCCACA+TGG | 0.689961 | 3:-48721070 | MsG0380014044.01.T01:CDS |
| CCTGTAGACCATCCACATGG+TGG | 0.727826 | 3:-48721067 | MsG0380014044.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTATTTCTATGTTATGTA+TGG | + | Chr3:48721025-48721044 | None:intergenic | 20.0% |
| ! | ATAGAAATAACACTTGGAAA+GGG | - | Chr3:48721033-48721052 | MsG0380014044.01.T01:CDS | 25.0% |
| ! | CATAACATAGAAATAACACT+TGG | - | Chr3:48721027-48721046 | MsG0380014044.01.T01:CDS | 25.0% |
| !!! | AGCAGTTTTTTGATATCAAA+CGG | + | Chr3:48721149-48721168 | MsG0380014043.01.T01:CDS | 25.0% |
| CATAGAAATAACACTTGGAA+AGG | - | Chr3:48721032-48721051 | MsG0380014044.01.T01:CDS | 30.0% | |
| GCAACATTAAAATTACCTTC+TGG | - | Chr3:48721117-48721136 | MsG0380014044.01.T01:CDS | 30.0% | |
| GGAGTAAACCAAAAAAGTTT+GGG | - | Chr3:48721198-48721217 | MsG0380014044.01.T01:CDS | 30.0% | |
| TGGAGTAAACCAAAAAAGTT+TGG | - | Chr3:48721197-48721216 | MsG0380014044.01.T01:CDS | 30.0% | |
| ! | ATTAAAATTACCTTCTGGAG+AGG | - | Chr3:48721122-48721141 | MsG0380014044.01.T01:CDS | 30.0% |
| AAAAAAACCCTCAACTCCTT+GGG | - | Chr3:48721332-48721351 | MsG0380014044.01.T01:CDS | 35.0% | |
| ATAACTACTCCTCTTACTAC+AGG | + | Chr3:48721258-48721277 | MsG0380014043.01.T01:CDS | 35.0% | |
| !!! | AGGGTTTTTTTCTACCAATC+GGG | + | Chr3:48721323-48721342 | MsG0380014043.01.T01:CDS | 35.0% |
| !!! | GAGGGTTTTTTTCTACCAAT+CGG | + | Chr3:48721324-48721343 | MsG0380014043.01.T01:CDS | 35.0% |
| AAAAAACCCTCAACTCCTTG+GGG | - | Chr3:48721333-48721352 | MsG0380014044.01.T01:CDS | 40.0% | |
| AAAAACTGCTCAGCAACAGT+AGG | - | Chr3:48721159-48721178 | MsG0380014044.01.T01:CDS | 40.0% | |
| AAGCTTGTACAGTTTGGGAA+GGG | - | Chr3:48720944-48720963 | MsG0380014044.01.T01:CDS | 40.0% | |
| AGCGAAACTGATTGCAAAAG+AGG | - | Chr3:48721086-48721105 | MsG0380014044.01.T01:CDS | 40.0% | |
| CGAAACTGATTGCAAAAGAG+GGG | - | Chr3:48721088-48721107 | MsG0380014044.01.T01:CDS | 40.0% | |
| GAAAAAAACCCTCAACTCCT+TGG | - | Chr3:48721331-48721350 | MsG0380014044.01.T01:CDS | 40.0% | |
| GAAATAACACTTGGAAAGGG+TGG | - | Chr3:48721036-48721055 | MsG0380014044.01.T01:CDS | 40.0% | |
| GATTGCAAAAGAGGGGAAAT+CGG | - | Chr3:48721095-48721114 | MsG0380014044.01.T01:CDS | 40.0% | |
| GCGAAACTGATTGCAAAAGA+GGG | - | Chr3:48721087-48721106 | MsG0380014044.01.T01:CDS | 40.0% | |
| GGAAGAAGCTTGTACAGTTT+GGG | - | Chr3:48720939-48720958 | MsG0380014044.01.T01:CDS | 40.0% | |
| TGGAAGAAGCTTGTACAGTT+TGG | - | Chr3:48720938-48720957 | MsG0380014044.01.T01:CDS | 40.0% | |
| !!! | GGGTTTTTTTCTACCAATCG+GGG | + | Chr3:48721322-48721341 | MsG0380014043.01.T01:CDS | 40.0% |
| ACTTCAACCGATATGCCCTT+AGG | - | Chr3:48720994-48721013 | MsG0380014044.01.T01:CDS | 45.0% | |
| AGCTTGTACAGTTTGGGAAG+GGG | - | Chr3:48720945-48720964 | MsG0380014044.01.T01:CDS | 45.0% | |
| CAAAAAAGTTTGGGCAGAGC+CGG | - | Chr3:48721207-48721226 | MsG0380014044.01.T01:CDS | 45.0% | |
| CAGCAACAGTAGGACAAGTA+GGG | - | Chr3:48721169-48721188 | MsG0380014044.01.T01:CDS | 45.0% | |
| CTACTTCTTCTTCCAAGTGC+AGG | + | Chr3:48721363-48721382 | MsG0380014043.01.T01:CDS | 45.0% | |
| GAAGCTTGTACAGTTTGGGA+AGG | - | Chr3:48720943-48720962 | MsG0380014044.01.T01:CDS | 45.0% | |
| GTAGGACAAGTAGGGAATGT+TGG | - | Chr3:48721177-48721196 | MsG0380014044.01.T01:CDS | 45.0% | |
| TCAGCAACAGTAGGACAAGT+AGG | - | Chr3:48721168-48721187 | MsG0380014044.01.T01:CDS | 45.0% | |
| TTATGTATGGCCGTGCCTAA+GGG | + | Chr3:48721012-48721031 | None:intergenic | 45.0% | |
| ! | ACCTAACCAACGTTTAGCTC+CGG | + | Chr3:48721229-48721248 | MsG0380014043.01.T01:CDS | 45.0% |
| AACCCTGTAGACCATCCACA+TGG | - | Chr3:48721279-48721298 | MsG0380014044.01.T01:CDS | 50.0% | |
| AACCGATATGCCCTTAGGCA+CGG | - | Chr3:48720999-48721018 | MsG0380014044.01.T01:CDS | 50.0% | |
| AGGATAACCCCAAGGAGTTG+AGG | + | Chr3:48721343-48721362 | MsG0380014043.01.T01:CDS | 50.0% | |
| ATCAAACGGACCTCTCCAGA+AGG | + | Chr3:48721135-48721154 | MsG0380014043.01.T01:CDS | 50.0% | |
| CACCATGTGGATGGTCTACA+GGG | + | Chr3:48721284-48721303 | MsG0380014043.01.T01:CDS | 50.0% | |
| GGACAATTAGCTAGAGCAGC+TGG | - | Chr3:48721057-48721076 | MsG0380014044.01.T01:CDS | 50.0% | |
| GGATAACCCCAAGGAGTTGA+GGG | + | Chr3:48721342-48721361 | MsG0380014043.01.T01:CDS | 50.0% | |
| GGTAAGCGTCCTGTAGTAAG+AGG | - | Chr3:48721246-48721265 | MsG0380014044.01.T01:CDS | 50.0% | |
| GTTATGTATGGCCGTGCCTA+AGG | + | Chr3:48721013-48721032 | None:intergenic | 50.0% | |
| !! | ATCCACATGGTGGTGGTGAA+GGG | - | Chr3:48721292-48721311 | MsG0380014044.01.T01:CDS | 50.0% |
| !!! | CGGCTCTGCCCAAACTTTTT+TGG | + | Chr3:48721209-48721228 | MsG0380014043.01.T01:CDS | 50.0% |
| CCAAGTGCAGGATAACCCCA+AGG | + | Chr3:48721351-48721370 | MsG0380014043.01.T01:CDS | 55.0% | |
| CCACCATGTGGATGGTCTAC+AGG | + | Chr3:48721285-48721304 | MsG0380014043.01.T01:CDS | 55.0% | |
| CCTGTAGACCATCCACATGG+TGG | - | Chr3:48721282-48721301 | MsG0380014044.01.T01:CDS | 55.0% | |
| CCTTGGGGTTATCCTGCACT+TGG | - | Chr3:48721348-48721367 | MsG0380014044.01.T01:CDS | 55.0% | |
| CTTCACCACCACCATGTGGA+TGG | + | Chr3:48721293-48721312 | MsG0380014043.01.T01:CDS | 55.0% | |
| GTAGACCATCCACATGGTGG+TGG | - | Chr3:48721285-48721304 | MsG0380014044.01.T01:CDS | 55.0% | |
| ! | GCCGGAGCTAAACGTTGGTT+AGG | - | Chr3:48721225-48721244 | MsG0380014044.01.T01:CDS | 55.0% |
| !! | ACATGGTGGTGGTGAAGGGA+GGG | - | Chr3:48721296-48721315 | MsG0380014044.01.T01:CDS | 55.0% |
| !! | CATCCACATGGTGGTGGTGA+AGG | - | Chr3:48721291-48721310 | MsG0380014044.01.T01:CDS | 55.0% |
| CTCCCTTCACCACCACCATG+TGG | + | Chr3:48721297-48721316 | MsG0380014043.01.T01:CDS | 60.0% | |
| GCAGAGCCGGAGCTAAACGT+TGG | - | Chr3:48721220-48721239 | MsG0380014044.01.T01:CDS | 60.0% | |
| ! | GGCCGTGCCTAAGGGCATAT+CGG | + | Chr3:48721004-48721023 | None:intergenic | 60.0% |
| !! | CACATGGTGGTGGTGAAGGG+AGG | - | Chr3:48721295-48721314 | MsG0380014044.01.T01:CDS | 60.0% |
| GGTGAAGGGAGGGCCCCGAT+TGG | - | Chr3:48721306-48721325 | MsG0380014044.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 48720937 | 48721434 | 48720937 | ID=MsG0380014044.01;Name=MsG0380014044.01 |
| Chr3 | mRNA | 48720937 | 48721434 | 48720937 | ID=MsG0380014044.01.T01;Parent=MsG0380014044.01;Name=MsG0380014044.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|165 |
| Chr3 | exon | 48720937 | 48721434 | 48720937 | ID=MsG0380014044.01.T01:exon:9271;Parent=MsG0380014044.01.T01 |
| Chr3 | CDS | 48720937 | 48721434 | 48720937 | ID=MsG0380014044.01.T01:cds;Parent=MsG0380014044.01.T01 |
| Gene Sequence |
| Protein sequence |
