AlfalfaGEDB | MsG0380013972.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013972.01

KEGG: K05579
GO: GO:0016651 GO:0048038 GO:0051287 GO:0055114
PFAM: PF00346

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013972.01.T01	YP_009642736.1	100	126	0	0	1	126	268	393	7.26E-82	255

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013972.01.T01	B5LMS0	99.206	126	1	0	1	126	268	393	2.40E-84	254

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013972.01.T01	A0A4P8F4K5	100.000	126	0	0	1	126	268	393	3.47e-82	255

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048689.01	MsG0380013972.01	0.837074	6.441847e-57	8.274545e-54
MsG0080048690.01	MsG0380013972.01	0.824118	9.597729e-54	8.423858e-51
MsG0080048691.01	MsG0380013972.01	0.829232	5.775926e-55	5.876249e-52
MsG0080048692.01	MsG0380013972.01	0.854766	9.888188e-62	2.232405e-58
MsG0080048698.01	MsG0380013972.01	0.911170	8.231360e-83	1.741862e-78
MsG0080048699.01	MsG0380013972.01	0.889740	1.847404e-73	1.509405e-69
MsG0080049076.01	MsG0380013972.01	0.806317	8.724221e-50	4.720599e-47
MsG0180002226.01	MsG0380013972.01	0.852427	4.649003e-61	9.710932e-58
MsG0180002435.01	MsG0380013972.01	0.817468	3.246529e-52	2.366395e-49
MsG0180003624.01	MsG0380013972.01	0.810465	1.137521e-50	6.861622e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013972.01.T01	MTR_6g042200	96.639	119	4	1	119	268	386	6.69e-75	235
MsG0380013972.01.T01	MTR_4g006100	97.479	119	3	1	119	268	386	8.77e-75	238
MsG0380013972.01.T01	MTR_0002s0150	78.992	119	25	1	119	299	417	2.16e-62	200

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013972.01.T01	ATCG01110	90.476	126	12	0	1	126	268	393	5.17e-77	233
MsG0380013972.01.T01	ATMG00510	37.594	133	70	3	1	126	268	394	4.05e-18	79.0

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Find 21 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAACTTTATGTGAGAGTTG+AGG	0.641734	3:+48543626	MsG0380013972.01.T01:CDS
AGATGGAAAATTCGTCCACC+TGG	0.529045	3:+48543705	MsG0380013972.01.T01:CDS
AGGTAGCATAGATATCATTA+TGG	0.351209	3:+48543797	MsG0380013972.01.T01:CDS
ATAGAGAAAAGGAGCCAGAA+TGG	0.528576	3:+48543541	MsG0380013972.01.T01:CDS
ATCCATTAAAATTATTCAAC+AGG	0.326815	3:+48543464	MsG0380013972.01.T01:CDS
ATTAGTTAAAAGAATGAAAT+TGG	0.240964	3:+48543755	MsG0380013972.01.T01:CDS
ATTATTCAACAGGCTTTGGA+AGG	0.539344	3:+48543474	MsG0380013972.01.T01:CDS
ATTTGCAAATTGATAAAACC+AGG	0.570420	3:-48543723	None:intergenic
CAGGCTTTGGAAGGAATTCC+AGG	0.354309	3:+48543483	MsG0380013972.01.T01:CDS
CTCACATAAAGTTCTTGTTT+GGG	0.400339	3:-48543618	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGTAGCATAGATATCATTA+TGG	+	Chr3:48543797-48543816	MsG0380013972.01.T01:CDS	30.0%
GCTGATATTATGACAATACT+AGG	+	Chr3:48543777-48543796	MsG0380013972.01.T01:CDS	30.0%
GGTAGCATAGATATCATTAT+GGG	+	Chr3:48543798-48543817	MsG0380013972.01.T01:CDS	30.0%
TCTCACATAAAGTTCTTGTT+TGG	-	Chr3:48543622-48543641	None:intergenic	30.0%
TTTCTAATAGGAGATCAGAA+TGG	+	Chr3:48543672-48543691	MsG0380013972.01.T01:CDS	30.0%
AAAAATTCCTAATTCCCCCT+TGG	-	Chr3:48543655-48543674	None:intergenic	35.0%
AAAATTCCTAATTCCCCCTT+GGG	-	Chr3:48543654-48543673	None:intergenic	35.0%
AGAACTTTATGTGAGAGTTG+AGG	+	Chr3:48543626-48543645	MsG0380013972.01.T01:CDS	35.0%
TGCAAATTGATAAAACCAGG+TGG	-	Chr3:48543723-48543742	None:intergenic	35.0%
TGTTTGGGCAATTCAAAAGT+CGG	-	Chr3:48543606-48543625	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	48543456	48543836	48543456	ID=MsG0380013972.01;Name=MsG0380013972.01
Chr3	mRNA	48543456	48543836	48543456	ID=MsG0380013972.01.T01;Parent=MsG0380013972.01;Name=MsG0380013972.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|126
Chr3	exon	48543456	48543836	48543456	ID=MsG0380013972.01.T01:exon:8493;Parent=MsG0380013972.01.T01
Chr3	CDS	48543456	48543836	48543456	ID=MsG0380013972.01.T01:cds;Parent=MsG0380013972.01.T01

Gene Sequence

>MsG0380013972.01.T01

ATGATGGAATCCATTAAAATTATTCAACAGGCTTTGGAAGGAATTCCAGGTGGGCCATATGAAAATTTAGAAATTCGCTCCTTTGATAGAGAAAAGGAGCCAGAATGGAATGATTTTGAATATCGATTCATTGGTAAAAAATCGTCTCCGACTTTTGAATTGCCCAAACAAGAACTTTATGTGAGAGTTGAGGCCCCCAAGGGGGAATTAGGAATTTTTCTAATAGGAGATCAGAATGGTTTTCCTTGGAGATGGAAAATTCGTCCACCTGGTTTTATCAATTTGCAAATTCTTCCTCAATTAGTTAAAAGAATGAAATTGGCTGATATTATGACAATACTAGGTAGCATAGATATCATTATGGGAGAAGTTGATCGTTGA

Protein sequence

>MsG0380013972.01.T01

MMESIKIIQQALEGIPGGPYENLEIRSFDREKEPEWNDFEYRFIGKKSSPTFELPKQELYVRVEAPKGELGIFLIGDQNGFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR*