Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013947.01.T05 | RHN59672.1 | 99.333 | 150 | 1 | 0 | 1 | 150 | 55 | 204 | 1.75E-104 | 307 |
| MsG0380013947.01.T02 | AWW91838.1 | 100 | 204 | 0 | 0 | 1 | 204 | 57 | 260 | 7.49E-144 | 411 |
| MsG0380013947.01.T03 | AWW91838.1 | 100 | 191 | 0 | 0 | 1 | 191 | 70 | 260 | 1.19E-134 | 387 |
| MsG0380013947.01.T04 | RHN59672.1 | 99.375 | 160 | 1 | 0 | 1 | 160 | 45 | 204 | 7.21E-112 | 326 |
| MsG0380013947.01.T01 | AWW91838.1 | 100 | 251 | 0 | 0 | 1 | 251 | 10 | 260 | 1.23E-179 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013947.01.T01 | P0CC66 | 98.008 | 251 | 5 | 0 | 1 | 251 | 260 | 510 | 3.84E-176 | 497 |
| MsG0380013947.01.T02 | P0CC66 | 97.549 | 204 | 5 | 0 | 1 | 204 | 307 | 510 | 1.50E-140 | 405 |
| MsG0380013947.01.T03 | P0CC60 | 97.382 | 191 | 5 | 0 | 1 | 191 | 320 | 510 | 1.03E-131 | 382 |
| MsG0380013947.01.T04 | P0CC94 | 97.5 | 160 | 4 | 0 | 1 | 160 | 351 | 510 | 1.10E-108 | 322 |
| MsG0380013947.01.T05 | P0CC66 | 97.333 | 150 | 4 | 0 | 1 | 150 | 361 | 510 | 2.05E-101 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013947.01.T01 | A0A2Z4KH55 | 100.000 | 251 | 0 | 0 | 1 | 251 | 10 | 260 | 5.87e-180 | 503 |
| MsG0380013947.01.T02 | A0A2Z4KH55 | 100.000 | 204 | 0 | 0 | 1 | 204 | 57 | 260 | 3.58e-144 | 411 |
| MsG0380013947.01.T03 | A0A2Z4KH55 | 100.000 | 191 | 0 | 0 | 1 | 191 | 70 | 260 | 5.70e-135 | 387 |
| MsG0380013947.01.T04 | A0A396I225 | 99.375 | 160 | 1 | 0 | 1 | 160 | 45 | 204 | 3.44e-112 | 326 |
| MsG0380013947.01.T05 | A0A396I225 | 99.333 | 150 | 1 | 0 | 1 | 150 | 55 | 204 | 8.36e-105 | 307 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048698.01 | MsG0380013947.01 | 0.823930 | 1.062629e-53 | 9.277888e-51 |
| MsG0180002226.01 | MsG0380013947.01 | 0.867617 | 1.199676e-65 | 4.215130e-62 |
| MsG0180002435.01 | MsG0380013947.01 | 0.817413 | 3.339759e-52 | 2.430649e-49 |
| MsG0380013889.01 | MsG0380013947.01 | 0.820185 | 7.839744e-53 | 6.160070e-50 |
| MsG0380013915.01 | MsG0380013947.01 | 0.964424 | 2.610555e-123 | 1.545930e-117 |
| MsG0380013916.01 | MsG0380013947.01 | 0.876433 | 1.402129e-68 | 6.797157e-65 |
| MsG0380013917.01 | MsG0380013947.01 | 0.844260 | 8.442637e-59 | 1.355323e-55 |
| MsG0380013918.01 | MsG0380013947.01 | 0.843844 | 1.091030e-58 | 1.729026e-55 |
| MsG0380013920.01 | MsG0380013947.01 | 0.857997 | 1.114134e-62 | 2.801977e-59 |
| MsG0380013931.01 | MsG0380013947.01 | 0.850186 | 1.997805e-60 | 3.881185e-57 |
| MsG0380013932.01 | MsG0380013947.01 | 0.811563 | 6.577179e-51 | 4.084754e-48 |
| MsG0380013942.01 | MsG0380013947.01 | 0.808321 | 3.280774e-50 | 1.870174e-47 |
| MsG0380013947.01 | MsG0380013948.01 | 0.871087 | 8.922813e-67 | 3.553546e-63 |
| MsG0380013947.01 | MsG0380013949.01 | 0.856255 | 3.641670e-62 | 8.638289e-59 |
| MsG0380013947.01 | MsG0380013952.01 | 0.849001 | 4.278715e-60 | 7.998010e-57 |
| MsG0380013947.01 | MsG0380013959.01 | 0.817833 | 2.685505e-52 | 1.977102e-49 |
| MsG0380013947.01 | MsG0380013964.01 | 0.813476 | 2.511358e-51 | 1.641736e-48 |
| MsG0380013947.01 | MsG0380013969.01 | 0.841578 | 4.364716e-58 | 6.441520e-55 |
| MsG0380013947.01 | MsG0380013972.01 | 0.828502 | 8.676338e-55 | 8.640148e-52 |
| MsG0380013947.01 | MsG0380013980.01 | 0.813774 | 2.159468e-51 | 1.423067e-48 |
| MsG0380013947.01 | MsG0380013981.01 | 0.841251 | 5.322717e-58 | 7.774745e-55 |
| MsG0380013947.01 | MsG0380013983.01 | 0.838791 | 2.331632e-57 | 3.156749e-54 |
| MsG0380013947.01 | MsG0380013993.01 | 0.829187 | 5.923991e-55 | 6.018996e-52 |
| MsG0380013947.01 | MsG0380013995.01 | 0.809151 | 2.180486e-50 | 1.270491e-47 |
| MsG0380013947.01 | MsG0380014011.01 | 0.809953 | 1.466650e-50 | 8.729256e-48 |
| MsG0380013947.01 | MsG0380014034.01 | 0.819387 | 1.192907e-52 | 9.166111e-50 |
| MsG0380013947.01 | MsG0380014035.01 | 0.834425 | 3.019144e-56 | 3.581750e-53 |
| MsG0380013947.01 | MsG0380014036.01 | 0.804291 | 2.317889e-49 | 1.190615e-46 |
| MsG0380013947.01 | MsG0380014044.01 | 0.813813 | 2.116294e-51 | 1.396191e-48 |
| MsG0380013947.01 | MsG0380014051.01 | 0.803724 | 3.041472e-49 | 1.539644e-46 |
| MsG0380013947.01 | MsG0380014057.01 | 0.820343 | 7.210877e-53 | 5.690656e-50 |
| MsG0380013947.01 | MsG0480021667.01 | 0.807391 | 5.171813e-50 | 2.877150e-47 |
| MsG0380013947.01 | MsG0680032339.01 | 0.921488 | 3.354343e-88 | 1.203745e-83 |
| MsG0380013947.01 | MsG0780040316.01 | 0.842534 | 2.439043e-58 | 3.709326e-55 |
| MsG0380013947.01 | MsG0780040317.01 | 0.837420 | 5.251954e-57 | 6.818312e-54 |
| MsG0380013947.01 | MsG0880044440.01 | 0.812492 | 4.125424e-51 | 2.626854e-48 |
| MsG0280007042.01 | MsG0380013947.01 | 0.827552 | 1.468813e-54 | 1.422641e-51 |
| MsG0280010137.01 | MsG0380013947.01 | 0.812057 | 5.134830e-51 | 3.231201e-48 |
| MsG0280010145.01 | MsG0380013947.01 | 0.801905 | 7.220131e-49 | 3.489173e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013947.01.T05 | MTR_3g035660 | 99.333 | 150 | 1 | 0 | 1 | 150 | 722 | 871 | 1.85e-101 | 310 |
| MsG0380013947.01.T05 | MTR_0002s0310 | 93.333 | 150 | 10 | 0 | 1 | 150 | 264 | 413 | 9.29e-84 | 252 |
| MsG0380013947.01.T05 | MTR_3g091540 | 100.000 | 33 | 0 | 0 | 64 | 96 | 44 | 76 | 3.24e-15 | 67.4 |
| MsG0380013947.01.T02 | MTR_3g035660 | 99.020 | 204 | 2 | 0 | 1 | 204 | 668 | 871 | 4.76e-140 | 412 |
| MsG0380013947.01.T02 | MTR_0002s0310 | 93.627 | 204 | 13 | 0 | 1 | 204 | 210 | 413 | 4.20e-109 | 319 |
| MsG0380013947.01.T02 | MTR_3g091540 | 100.000 | 33 | 0 | 0 | 118 | 150 | 44 | 76 | 1.12e-14 | 67.4 |
| MsG0380013947.01.T03 | MTR_3g035660 | 98.953 | 191 | 2 | 0 | 1 | 191 | 681 | 871 | 6.23e-131 | 388 |
| MsG0380013947.01.T03 | MTR_0002s0310 | 94.241 | 191 | 11 | 0 | 1 | 191 | 223 | 413 | 1.22e-100 | 296 |
| MsG0380013947.01.T03 | MTR_3g091540 | 100.000 | 33 | 0 | 0 | 105 | 137 | 44 | 76 | 1.03e-14 | 67.0 |
| MsG0380013947.01.T04 | MTR_3g035660 | 99.375 | 160 | 1 | 0 | 1 | 160 | 712 | 871 | 6.34e-109 | 330 |
| MsG0380013947.01.T04 | MTR_0002s0310 | 93.750 | 160 | 10 | 0 | 1 | 160 | 254 | 413 | 5.65e-91 | 271 |
| MsG0380013947.01.T04 | MTR_3g091540 | 100.000 | 33 | 0 | 0 | 74 | 106 | 44 | 76 | 4.47e-15 | 67.4 |
| MsG0380013947.01.T01 | MTR_3g035660 | 98.805 | 251 | 3 | 0 | 1 | 251 | 621 | 871 | 1.19e-173 | 501 |
| MsG0380013947.01.T01 | MTR_0002s0310 | 94.422 | 251 | 14 | 0 | 1 | 251 | 163 | 413 | 3.10e-143 | 407 |
| MsG0380013947.01.T01 | MTR_3g091540 | 100.000 | 33 | 0 | 0 | 165 | 197 | 44 | 76 | 2.20e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013947.01.T05 | ATCG01250 | 94.667 | 150 | 8 | 0 | 1 | 150 | 238 | 387 | 3.48e-86 | 257 |
| MsG0380013947.01.T05 | ATCG00890 | 94.667 | 150 | 8 | 0 | 1 | 150 | 238 | 387 | 3.48e-86 | 257 |
| MsG0380013947.01.T02 | ATCG01250 | 94.608 | 204 | 11 | 0 | 1 | 204 | 184 | 387 | 1.28e-111 | 324 |
| MsG0380013947.01.T02 | ATCG00890 | 94.608 | 204 | 11 | 0 | 1 | 204 | 184 | 387 | 1.28e-111 | 324 |
| MsG0380013947.01.T02 | AT2G07689 | 38.235 | 136 | 82 | 2 | 1 | 136 | 55 | 188 | 4.70e-21 | 87.0 |
| MsG0380013947.01.T03 | ATCG01250 | 95.288 | 191 | 9 | 0 | 1 | 191 | 197 | 387 | 1.70e-103 | 303 |
| MsG0380013947.01.T03 | ATCG00890 | 95.288 | 191 | 9 | 0 | 1 | 191 | 197 | 387 | 1.70e-103 | 303 |
| MsG0380013947.01.T03 | AT2G07689 | 36.585 | 123 | 76 | 2 | 1 | 123 | 68 | 188 | 2.43e-16 | 74.3 |
| MsG0380013947.01.T04 | ATCG01250 | 94.375 | 160 | 9 | 0 | 1 | 160 | 228 | 387 | 9.03e-93 | 275 |
| MsG0380013947.01.T04 | ATCG00890 | 94.375 | 160 | 9 | 0 | 1 | 160 | 228 | 387 | 9.03e-93 | 275 |
| MsG0380013947.01.T01 | ATCG01250 | 95.618 | 251 | 11 | 0 | 1 | 251 | 137 | 387 | 3.95e-147 | 416 |
| MsG0380013947.01.T01 | ATCG00890 | 95.618 | 251 | 11 | 0 | 1 | 251 | 137 | 387 | 3.95e-147 | 416 |
| MsG0380013947.01.T01 | AT2G07689 | 37.158 | 183 | 111 | 3 | 1 | 183 | 10 | 188 | 2.81e-27 | 104 |
Find 47 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGGATATGTAATTAT+TGG | 0.189063 | 3:-48491542 | MsG0380013947.01.T01:CDS |
| GCTATTCTTAGCATGCTATT+AGG | 0.213688 | 3:-48491626 | MsG0380013947.01.T01:CDS |
| TTTGCTTGCATTGTGTTATT+TGG | 0.223841 | 3:-48491437 | MsG0380013947.01.T01:CDS |
| TCGGAAAACTTCATTTATTC+TGG | 0.226485 | 3:-48491289 | MsG0380013947.01.T01:CDS |
| ATGGAATTGTTTGATCTTAC+AGG | 0.227109 | 3:+48491116 | None:intergenic |
| GCACGTGAGGAGTTATTTCT+TGG | 0.274625 | 3:+48491156 | None:intergenic |
| TCCTGAGCAATTTCAATAAT+GGG | 0.279137 | 3:+48491035 | None:intergenic |
| TCGTTTGATGAGAAATAAAA+AGG | 0.282633 | 3:+48491674 | None:intergenic |
| ATCCTGAGCAATTTCAATAA+TGG | 0.298192 | 3:+48491034 | None:intergenic |
| CTATTCTTAGCATGCTATTA+GGG | 0.301257 | 3:-48491625 | MsG0380013947.01.T01:CDS |
| TATTCGTCCATAGGTCAAAT+TGG | 0.303171 | 3:-48491557 | MsG0380013947.01.T01:CDS |
| GCAAGCAGGCCTATATTTCT+TGG | 0.316441 | 3:-48491258 | MsG0380013947.01.T01:CDS |
| GCATACGTTTCATGCTTGTT+TGG | 0.326865 | 3:+48491585 | None:intergenic |
| CATACGTTTCATGCTTGTTT+GGG | 0.369828 | 3:+48491586 | None:intergenic |
| GTAATTATTGGAATAATTGT+TGG | 0.373428 | 3:-48491530 | MsG0380013947.01.T01:CDS |
| CTATATTTCTTGGTTTCAAT+AGG | 0.375317 | 3:-48491248 | MsG0380013947.01.T01:CDS |
| ATGGGGTTCATTGATATTCC+TGG | 0.380234 | 3:+48491053 | None:intergenic |
| GTGTTATTTGGTCTACGTAC+TGG | 0.413420 | 3:-48491425 | MsG0380013947.01.T01:CDS |
| TACATATCCAATTTGACCTA+TGG | 0.420081 | 3:+48491550 | None:intergenic |
| TTCTGGTGTGGATGGCAAGC+AGG | 0.432708 | 3:-48491272 | MsG0380013947.01.T01:CDS |
| CTATTGAAACCAAGAAATAT+AGG | 0.436794 | 3:+48491249 | None:intergenic |
| GCCCTATGTCTATTATCCTT+AGG | 0.440840 | 3:-48491338 | MsG0380013947.01.T01:CDS |
| GGAGGTCTTCCTCCACTAGC+AGG | 0.443104 | 3:-48491317 | MsG0380013947.01.T01:CDS |
| AGCAAAAGTTCCTAGATTCA+TGG | 0.448640 | 3:+48491454 | None:intergenic |
| CCCCATTATTGAAATTGCTC+AGG | 0.459148 | 3:-48491036 | MsG0380013947.01.T01:CDS |
| TTCTATATCTCCATGAATCT+AGG | 0.460861 | 3:-48491464 | MsG0380013947.01.T01:CDS |
| TTCATTTATTCTGGTGTGGA+TGG | 0.469314 | 3:-48491280 | MsG0380013947.01.T01:CDS |
| ATAATTAAGTTATTAATGAC+TGG | 0.481516 | 3:-48491185 | MsG0380013947.01.T01:CDS |
| CTCACGTGCGAAATTATAGA+AGG | 0.502645 | 3:-48491142 | MsG0380013947.01.T01:CDS |
| ATGCTTGCTTATTCGTCCAT+AGG | 0.517225 | 3:-48491566 | MsG0380013947.01.T01:CDS |
| AAACTTCATTTATTCTGGTG+TGG | 0.518432 | 3:-48491284 | MsG0380013947.01.T01:CDS |
| TTTATTTCTCATCAAACGAA+TGG | 0.522523 | 3:-48491670 | MsG0380013947.01.T01:CDS |
| GATAACATTCGAGATTATGC+AGG | 0.531827 | 3:-48491398 | MsG0380013947.01.T01:CDS |
| TATAATCATACTCAATTCGA+TGG | 0.542526 | 3:+48491097 | None:intergenic |
| ATAATTGTTGGAGACTCAAA+TGG | 0.548093 | 3:-48491518 | MsG0380013947.01.T01:CDS |
| AGAAAAGCAACGACTGGAGT+CGG | 0.551106 | 3:+48491752 | None:intergenic |
| TCCTAAGGATAATAGACATA+GGG | 0.556597 | 3:+48491337 | None:intergenic |
| CTCCTAAGGATAATAGACAT+AGG | 0.558738 | 3:+48491336 | None:intergenic |
| CTTCTATAATTTCGCACGTG+AGG | 0.565900 | 3:+48491143 | None:intergenic |
| ATAGCATGCTAAGAATAGCT+AGG | 0.576533 | 3:+48491630 | None:intergenic |
| TAGTGGAGGAAGACCTCCTA+AGG | 0.577052 | 3:+48491322 | None:intergenic |
| ACAGAAAGAAAAGCAACGAC+TGG | 0.577795 | 3:+48491746 | None:intergenic |
| CTATGTCTATTATCCTTAGG+AGG | 0.590927 | 3:-48491335 | MsG0380013947.01.T01:CDS |
| CCTGAGCAATTTCAATAATG+GGG | 0.604713 | 3:+48491036 | None:intergenic |
| GTGATAGCATCTACTATACC+AGG | 0.610688 | 3:-48491071 | MsG0380013947.01.T01:CDS |
| ATTGTTGGAGACTCAAATGG+TGG | 0.626325 | 3:-48491515 | MsG0380013947.01.T01:CDS |
| AGGAATATCGAAAATTCGAG+TGG | 0.650147 | 3:+48491694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAAGTTATTAATGAC+TGG | - | Chr3:48491592-48491611 | MsG0380013947.01.T01:CDS | 15.0% |
| !! | CAAATTGGATATGTAATTAT+TGG | - | Chr3:48491235-48491254 | MsG0380013947.01.T01:CDS | 20.0% |
| !! | GTAATTATTGGAATAATTGT+TGG | - | Chr3:48491247-48491266 | MsG0380013947.01.T01:CDS | 20.0% |
| ! | CTATATTTCTTGGTTTCAAT+AGG | - | Chr3:48491529-48491548 | MsG0380013947.01.T01:CDS | 25.0% |
| ! | CTATTGAAACCAAGAAATAT+AGG | + | Chr3:48491531-48491550 | None:intergenic | 25.0% |
| ! | TATAATCATACTCAATTCGA+TGG | + | Chr3:48491683-48491702 | None:intergenic | 25.0% |
| ! | TCGTTTGATGAGAAATAAAA+AGG | + | Chr3:48491106-48491125 | None:intergenic | 25.0% |
| !! | TTTATTTCTCATCAAACGAA+TGG | - | Chr3:48491107-48491126 | MsG0380013947.01.T01:CDS | 25.0% |
| !!! | ATACACAAAAGATCCTTTTT+TGG | - | Chr3:48491405-48491424 | MsG0380013947.01.T01:CDS | 25.0% |
| AAACTTCATTTATTCTGGTG+TGG | - | Chr3:48491493-48491512 | MsG0380013947.01.T01:CDS | 30.0% | |
| ATAATTGTTGGAGACTCAAA+TGG | - | Chr3:48491259-48491278 | MsG0380013947.01.T01:CDS | 30.0% | |
| ATCCTGAGCAATTTCAATAA+TGG | + | Chr3:48491746-48491765 | None:intergenic | 30.0% | |
| ATGGAATTGTTTGATCTTAC+AGG | + | Chr3:48491664-48491683 | None:intergenic | 30.0% | |
| CTATTCTTAGCATGCTATTA+GGG | - | Chr3:48491152-48491171 | MsG0380013947.01.T01:CDS | 30.0% | |
| TACATATCCAATTTGACCTA+TGG | + | Chr3:48491230-48491249 | None:intergenic | 30.0% | |
| TCCTAAGGATAATAGACATA+GGG | + | Chr3:48491443-48491462 | None:intergenic | 30.0% | |
| TCCTGAGCAATTTCAATAAT+GGG | + | Chr3:48491745-48491764 | None:intergenic | 30.0% | |
| TCGGAAAACTTCATTTATTC+TGG | - | Chr3:48491488-48491507 | MsG0380013947.01.T01:CDS | 30.0% | |
| TTCTATATCTCCATGAATCT+AGG | - | Chr3:48491313-48491332 | MsG0380013947.01.T01:CDS | 30.0% | |
| ! | TTTGCTTGCATTGTGTTATT+TGG | - | Chr3:48491340-48491359 | MsG0380013947.01.T01:CDS | 30.0% |
| AGCAAAAGTTCCTAGATTCA+TGG | + | Chr3:48491326-48491345 | None:intergenic | 35.0% | |
| AGGAATATCGAAAATTCGAG+TGG | + | Chr3:48491086-48491105 | None:intergenic | 35.0% | |
| ATAGCATGCTAAGAATAGCT+AGG | + | Chr3:48491150-48491169 | None:intergenic | 35.0% | |
| CATACGTTTCATGCTTGTTT+GGG | + | Chr3:48491194-48491213 | None:intergenic | 35.0% | |
| CCTGAGCAATTTCAATAATG+GGG | + | Chr3:48491744-48491763 | None:intergenic | 35.0% | |
| CTATGTCTATTATCCTTAGG+AGG | - | Chr3:48491442-48491461 | MsG0380013947.01.T01:CDS | 35.0% | |
| CTCCTAAGGATAATAGACAT+AGG | + | Chr3:48491444-48491463 | None:intergenic | 35.0% | |
| GATAACATTCGAGATTATGC+AGG | - | Chr3:48491379-48491398 | MsG0380013947.01.T01:CDS | 35.0% | |
| GCTATTCTTAGCATGCTATT+AGG | - | Chr3:48491151-48491170 | MsG0380013947.01.T01:CDS | 35.0% | |
| TATTCGTCCATAGGTCAAAT+TGG | - | Chr3:48491220-48491239 | MsG0380013947.01.T01:CDS | 35.0% | |
| TTCATTTATTCTGGTGTGGA+TGG | - | Chr3:48491497-48491516 | MsG0380013947.01.T01:CDS | 35.0% | |
| ACAGAAAGAAAAGCAACGAC+TGG | + | Chr3:48491034-48491053 | None:intergenic | 40.0% | |
| ATGCTTGCTTATTCGTCCAT+AGG | - | Chr3:48491211-48491230 | MsG0380013947.01.T01:CDS | 40.0% | |
| ATGGGGTTCATTGATATTCC+TGG | + | Chr3:48491727-48491746 | None:intergenic | 40.0% | |
| ATTGTTGGAGACTCAAATGG+TGG | - | Chr3:48491262-48491281 | MsG0380013947.01.T01:CDS | 40.0% | |
| CCCCATTATTGAAATTGCTC+AGG | - | Chr3:48491741-48491760 | MsG0380013947.01.T01:CDS | 40.0% | |
| CTCACGTGCGAAATTATAGA+AGG | - | Chr3:48491635-48491654 | MsG0380013947.01.T01:CDS | 40.0% | |
| CTTCTATAATTTCGCACGTG+AGG | + | Chr3:48491637-48491656 | None:intergenic | 40.0% | |
| GCATACGTTTCATGCTTGTT+TGG | + | Chr3:48491195-48491214 | None:intergenic | 40.0% | |
| GCCCTATGTCTATTATCCTT+AGG | - | Chr3:48491439-48491458 | MsG0380013947.01.T01:CDS | 40.0% | |
| GCTAAAGAGAGAGCCAAAAA+AGG | + | Chr3:48491421-48491440 | None:intergenic | 40.0% | |
| GTGATAGCATCTACTATACC+AGG | - | Chr3:48491706-48491725 | MsG0380013947.01.T01:CDS | 40.0% | |
| TTTCCGAAAAAACCTGCTAG+TGG | + | Chr3:48491475-48491494 | None:intergenic | 40.0% | |
| !! | GTGTTATTTGGTCTACGTAC+TGG | - | Chr3:48491352-48491371 | MsG0380013947.01.T01:CDS | 40.0% |
| AGAAAAGCAACGACTGGAGT+CGG | + | Chr3:48491028-48491047 | None:intergenic | 45.0% | |
| GCAAGCAGGCCTATATTTCT+TGG | - | Chr3:48491519-48491538 | MsG0380013947.01.T01:CDS | 45.0% | |
| !! | GCACGTGAGGAGTTATTTCT+TGG | + | Chr3:48491624-48491643 | None:intergenic | 45.0% |
| !!! | CCTCCACTAGCAGGTTTTTT+CGG | - | Chr3:48491469-48491488 | MsG0380013947.01.T01:CDS | 45.0% |
| CCGAAAAAACCTGCTAGTGG+AGG | + | Chr3:48491472-48491491 | None:intergenic | 50.0% | |
| TAGTGGAGGAAGACCTCCTA+AGG | + | Chr3:48491458-48491477 | None:intergenic | 50.0% | |
| TTCTGGTGTGGATGGCAAGC+AGG | - | Chr3:48491505-48491524 | MsG0380013947.01.T01:CDS | 55.0% | |
| GGAGGTCTTCCTCCACTAGC+AGG | - | Chr3:48491460-48491479 | MsG0380013947.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 48491022 | 48491777 | 48491022 | ID=MsG0380013947.01;Name=MsG0380013947.01 |
| Chr3 | mRNA | 48491022 | 48491777 | 48491022 | ID=MsG0380013947.01.T01;Parent=MsG0380013947.01;Name=MsG0380013947.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|251 |
| Chr3 | exon | 48491022 | 48491777 | 48491022 | ID=MsG0380013947.01.T01:exon:57070;Parent=MsG0380013947.01.T01 |
| Chr3 | CDS | 48491022 | 48491777 | 48491022 | ID=MsG0380013947.01.T01:cds;Parent=MsG0380013947.01.T01 |
| Chr3 | mRNA | 48491022 | 48491636 | 48491022 | ID=MsG0380013947.01.T02;Parent=MsG0380013947.01;Name=MsG0380013947.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|204 |
| Chr3 | exon | 48491022 | 48491636 | 48491022 | ID=MsG0380013947.01.T02:exon:57071;Parent=MsG0380013947.01.T02 |
| Chr3 | CDS | 48491022 | 48491636 | 48491022 | ID=MsG0380013947.01.T02:cds;Parent=MsG0380013947.01.T02 |
| Chr3 | mRNA | 48491022 | 48491597 | 48491022 | ID=MsG0380013947.01.T03;Parent=MsG0380013947.01;Name=MsG0380013947.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|191 |
| Chr3 | exon | 48491022 | 48491597 | 48491022 | ID=MsG0380013947.01.T03:exon:57072;Parent=MsG0380013947.01.T03 |
| Chr3 | CDS | 48491022 | 48491597 | 48491022 | ID=MsG0380013947.01.T03:cds;Parent=MsG0380013947.01.T03 |
| Chr3 | mRNA | 48491022 | 48491504 | 48491022 | ID=MsG0380013947.01.T04;Parent=MsG0380013947.01;Name=MsG0380013947.01.T04;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|160 |
| Chr3 | exon | 48491022 | 48491504 | 48491022 | ID=MsG0380013947.01.T04:exon:57073;Parent=MsG0380013947.01.T04 |
| Chr3 | CDS | 48491022 | 48491504 | 48491022 | ID=MsG0380013947.01.T04:cds;Parent=MsG0380013947.01.T04 |
| Chr3 | mRNA | 48491022 | 48491474 | 48491022 | ID=MsG0380013947.01.T05;Parent=MsG0380013947.01;Name=MsG0380013947.01.T05;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|150 |
| Chr3 | exon | 48491022 | 48491474 | 48491022 | ID=MsG0380013947.01.T05:exon:57074;Parent=MsG0380013947.01.T05 |
| Chr3 | CDS | 48491022 | 48491474 | 48491022 | ID=MsG0380013947.01.T05:cds;Parent=MsG0380013947.01.T05 |
| Gene Sequence |
| Protein sequence |
