AlfalfaGEDB | MsG0380013950.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013950.01

KEGG: K02956
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF00312

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013950.01.T01	YP_009141730.1	100	91	0	0	1	91	1	91	2.46E-57	181

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013950.01.T01	Q9BBN7	83.516	91	14	1	1	91	1	90	8.48E-46	144

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013950.01.T01	A0A4P8F435	100.000	91	0	0	1	91	1	91	1.18e-57	181

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180002435.01	MsG0380013950.01	0.801104	1.054115e-48	4.992074e-46
MsG0280007041.01	MsG0380013950.01	0.814384	1.583860e-51	1.061241e-48
MsG0280007042.01	MsG0380013950.01	0.847872	8.782637e-60	1.582777e-56
MsG0380013918.01	MsG0380013950.01	0.821444	4.023622e-53	3.274040e-50
MsG0380013919.01	MsG0380013950.01	0.806296	8.812591e-50	4.765976e-47
MsG0380013920.01	MsG0380013950.01	0.818890	1.548055e-52	1.173394e-49
MsG0380013923.01	MsG0380013950.01	0.800513	1.391247e-48	6.490362e-46
MsG0380013929.01	MsG0380013950.01	0.814574	1.437635e-51	9.681993e-49
MsG0380013931.01	MsG0380013950.01	0.842051	3.274230e-58	4.904077e-55
MsG0380013932.01	MsG0380013950.01	0.908902	1.028354e-81	1.951058e-77

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013950.01.T01	MTR_4g006090	98.901	91	1	1	91	1	91	6.02e-61	180
MsG0380013950.01.T01	MTR_6g042190	95.604	91	4	1	91	1	91	9.20e-59	175
MsG0380013950.01.T01	MTR_7g021690	97.468	79	2	13	91	1080	1158	2.14e-46	158
MsG0380013950.01.T01	MTR_0002s0210	68.000	75	24	13	87	15	89	3.76e-21	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013950.01.T01	ATCG01120	70.330	91	24	1	1	91	1	88	1.38e-37	121

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Find 14 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTATTTATCTCAAA+GGG	0.376816	3:+48497840	MsG0380013950.01.T01:CDS
AAAGACTATTTATCTCAAAG+GGG	0.651887	3:+48497841	MsG0380013950.01.T01:CDS
AATAAATCAGTTGGGTATTC+GGG	0.307511	3:+48497942	MsG0380013950.01.T01:CDS
ACTAAGACTTACTTCACATT+TGG	0.336099	3:+48497807	MsG0380013950.01.T01:CDS
ACTTGAAATTCAACTGATCC+GGG	0.468230	3:-48497763	None:intergenic
AGGGGTTTACATATAATTCT+AGG	0.296760	3:+48497859	MsG0380013950.01.T01:CDS
AGTATTCAATTTCCATAATA+AGG	0.215006	3:+48497783	MsG0380013950.01.T01:CDS
CAAAAGACTATTTATCTCAA+AGG	0.501338	3:+48497839	MsG0380013950.01.T01:CDS
CTTGAAATTCAACTGATCCG+GGG	0.649180	3:-48497762	None:intergenic
CTTTGAGATAAATAGTCTTT+TGG	0.244227	3:-48497838	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AAAAAAGAAGAAGAAAACCC+CGG	+	Chr3:48497745-48497764	MsG0380013950.01.T01:CDS	30.0%
	AATAAATCAGTTGGGTATTC+GGG	+	Chr3:48497942-48497961	MsG0380013950.01.T01:CDS	30.0%
	ACTAAGACTTACTTCACATT+TGG	+	Chr3:48497807-48497826	MsG0380013950.01.T01:CDS	30.0%
	AGGGGTTTACATATAATTCT+AGG	+	Chr3:48497859-48497878	MsG0380013950.01.T01:CDS	30.0%
	TACTTGAAATTCAACTGATC+CGG	-	Chr3:48497767-48497786	None:intergenic	30.0%
	ACTTGAAATTCAACTGATCC+GGG	-	Chr3:48497766-48497785	None:intergenic	35.0%
	CTTGAAATTCAACTGATCCG+GGG	-	Chr3:48497765-48497784	None:intergenic	40.0%
!	AAAGACTATTTATCTCAAAG+GGG	+	Chr3:48497841-48497860	MsG0380013950.01.T01:CDS	25.0%
!	CAAAAGACTATTTATCTCAA+AGG	+	Chr3:48497839-48497858	MsG0380013950.01.T01:CDS	25.0%
!	TAAGTCTTAGTACCTTATTA+TGG	-	Chr3:48497798-48497817	None:intergenic	25.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	48497706	48497981	48497706	ID=MsG0380013950.01;Name=MsG0380013950.01
Chr3	mRNA	48497706	48497981	48497706	ID=MsG0380013950.01.T01;Parent=MsG0380013950.01;Name=MsG0380013950.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|91
Chr3	exon	48497706	48497981	48497706	ID=MsG0380013950.01.T01:exon:16748;Parent=MsG0380013950.01.T01
Chr3	CDS	48497706	48497981	48497706	ID=MsG0380013950.01.T01:cds;Parent=MsG0380013950.01.T01

Gene Sequence	>MsG0380013950.01.T01 ATGATAAAAAATTCATTTATACCTGTTATTTCACAAAAAAAAAAAGAAGAAGAAAACCCCGGATCAGTTGAATTTCAAGTATTCAATTTCCATAATAAGGTACTAAGACTTACTTCACATTTGGAATTACACCCAAAAGACTATTTATCTCAAAGGGGTTTACATATAATTCTAGGAAAACGGCAACGACTACTGTCTTATTTGTCAAAGAAAAATAAAATACGTTATAAAAAATTAATAAATCAGTTGGGTATTCGGGATTCACAAATTCGTTAA
Protein sequence	>MsG0380013950.01.T01 MIKNSFIPVISQKKKEEENPGSVEFQVFNFHNKVLRLTSHLELHPKDYLSQRGLHIILGKRQRLLSYLSKKNKIRYKKLINQLGIRDSQIR*