Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003994.01.T01 | XP_003590670.1 | 93.805 | 226 | 14 | 0 | 5 | 230 | 74 | 299 | 4.05E-153 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003994.01.T01 | Q9KG32 | 38.393 | 224 | 112 | 4 | 7 | 230 | 68 | 265 | 6.07E-41 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048701.01 | MsG0180003994.01 | 0.810776 | 9.741399e-51 | 5.925422e-48 |
| MsG0080049140.01 | MsG0180003994.01 | 0.834606 | 2.719071e-56 | 3.243146e-53 |
| MsG0180000314.01 | MsG0180003994.01 | 0.811501 | 6.783625e-51 | 4.206308e-48 |
| MsG0180000353.01 | MsG0180003994.01 | 0.812696 | 3.722618e-51 | 2.383116e-48 |
| MsG0180003281.01 | MsG0180003994.01 | 0.802609 | 5.172537e-49 | 2.544780e-46 |
| MsG0180003796.01 | MsG0180003994.01 | 0.802962 | 4.373698e-49 | 2.171222e-46 |
| MsG0180003994.01 | MsG0180003995.01 | 0.818450 | 1.948285e-52 | 1.459003e-49 |
| MsG0180003994.01 | MsG0180004099.01 | 0.803971 | 2.702267e-49 | 1.376705e-46 |
| MsG0180003994.01 | MsG0180004711.01 | 0.808117 | 3.625622e-50 | 2.055630e-47 |
| MsG0180003994.01 | MsG0180004806.01 | 0.807040 | 6.136979e-50 | 3.383046e-47 |
| MsG0180003994.01 | MsG0180004958.01 | 0.822451 | 2.351919e-53 | 1.969400e-50 |
| MsG0180003994.01 | MsG0180004970.01 | 0.825511 | 4.503513e-54 | 4.113290e-51 |
| MsG0180003994.01 | MsG0180005435.01 | 0.809923 | 1.488066e-50 | 8.849911e-48 |
| MsG0180003994.01 | MsG0180005835.01 | 0.818375 | 2.025253e-52 | 1.513482e-49 |
| MsG0180003994.01 | MsG0180006000.01 | 0.817883 | 2.617219e-52 | 1.929376e-49 |
| MsG0180003994.01 | MsG0280006311.01 | 0.823943 | 1.054724e-53 | 9.212664e-51 |
| MsG0180003994.01 | MsG0280007359.01 | 0.806628 | 7.501323e-50 | 4.091028e-47 |
| MsG0180003994.01 | MsG0280007761.01 | 0.809221 | 2.106441e-50 | 1.229641e-47 |
| MsG0180003994.01 | MsG0280008280.01 | 0.848927 | 4.486307e-60 | 8.365236e-57 |
| MsG0180003994.01 | MsG0280009493.01 | 0.828870 | 7.066934e-55 | 7.112334e-52 |
| MsG0180003994.01 | MsG0280009514.01 | 0.806227 | 9.113444e-50 | 4.920192e-47 |
| MsG0180003994.01 | MsG0280010779.01 | 0.807739 | 4.363492e-50 | 2.449538e-47 |
| MsG0180003994.01 | MsG0280010795.01 | 0.804533 | 2.064128e-49 | 1.066835e-46 |
| MsG0180003994.01 | MsG0280011154.01 | 0.811891 | 5.580587e-51 | 3.495889e-48 |
| MsG0180003994.01 | MsG0280011258.01 | 0.804180 | 2.444325e-49 | 1.251970e-46 |
| MsG0180003994.01 | MsG0280011282.01 | 0.814375 | 1.591089e-51 | 1.065794e-48 |
| MsG0180003994.01 | MsG0380014387.01 | 0.821135 | 4.742652e-53 | 3.826195e-50 |
| MsG0180003994.01 | MsG0380014808.01 | 0.810715 | 1.004371e-50 | 6.099317e-48 |
| MsG0180003994.01 | MsG0380015548.01 | 0.832779 | 7.780753e-56 | 8.785581e-53 |
| MsG0180003994.01 | MsG0380016140.01 | 0.811151 | 8.081610e-51 | 4.964789e-48 |
| MsG0180003994.01 | MsG0380016703.01 | 0.814851 | 1.248400e-51 | 8.470239e-49 |
| MsG0180003994.01 | MsG0380016994.01 | 0.804329 | 2.276175e-49 | 1.170308e-46 |
| MsG0180003994.01 | MsG0380017159.01 | 0.817878 | 2.623357e-52 | 1.933702e-49 |
| MsG0180003994.01 | MsG0380017239.01 | 0.816264 | 6.049919e-52 | 4.266681e-49 |
| MsG0180003994.01 | MsG0480018397.01 | 0.818386 | 2.014405e-52 | 1.505788e-49 |
| MsG0180003994.01 | MsG0480018918.01 | 0.825830 | 3.783834e-54 | 3.487749e-51 |
| MsG0180003994.01 | MsG0480020965.01 | 0.804758 | 1.852724e-49 | 9.632246e-47 |
| MsG0180003994.01 | MsG0480021013.01 | 0.801707 | 7.928321e-49 | 3.812071e-46 |
| MsG0180003994.01 | MsG0480022325.01 | 0.808320 | 3.281317e-50 | 1.870460e-47 |
| MsG0180003994.01 | MsG0480022331.01 | 0.805413 | 1.350843e-49 | 7.142194e-47 |
| MsG0180003994.01 | MsG0480023262.01 | 0.808637 | 2.808891e-50 | 1.614318e-47 |
| MsG0180003994.01 | MsG0480023832.01 | 0.801362 | 9.334668e-49 | 4.449390e-46 |
| MsG0180003994.01 | MsG0580024489.01 | 0.853596 | 2.152535e-61 | 4.676025e-58 |
| MsG0180003994.01 | MsG0580024758.01 | 0.819818 | 9.512245e-53 | 7.398124e-50 |
| MsG0180003994.01 | MsG0580025614.01 | 0.821033 | 5.006194e-53 | 4.027619e-50 |
| MsG0180003994.01 | MsG0580025766.01 | 0.804068 | 2.578931e-49 | 1.317203e-46 |
| MsG0180003994.01 | MsG0580026089.01 | 0.816045 | 6.770994e-52 | 4.746730e-49 |
| MsG0180003994.01 | MsG0580028756.01 | 0.806573 | 7.704189e-50 | 4.196038e-47 |
| MsG0180003994.01 | MsG0580029298.01 | 0.808241 | 3.411364e-50 | 1.940558e-47 |
| MsG0180003994.01 | MsG0680030949.01 | 0.801427 | 9.050224e-49 | 4.320834e-46 |
| MsG0180003994.01 | MsG0680034598.01 | 0.817449 | 3.279531e-52 | 2.389103e-49 |
| MsG0180003994.01 | MsG0780036752.01 | 0.821459 | 3.993523e-53 | 3.250747e-50 |
| MsG0180003994.01 | MsG0780040307.01 | 0.801035 | 1.088771e-48 | 5.147315e-46 |
| MsG0180003994.01 | MsG0780040896.01 | 0.834827 | 2.393300e-56 | 2.873481e-53 |
| MsG0180003994.01 | MsG0780041063.01 | 0.816972 | 4.196513e-52 | 3.017622e-49 |
| MsG0180003994.01 | MsG0780041132.01 | 0.809660 | 1.695415e-50 | 1.001369e-47 |
| MsG0180003994.01 | MsG0880041860.01 | 0.837717 | 4.409424e-57 | 5.777674e-54 |
| MsG0180003994.01 | MsG0880043516.01 | 0.840262 | 9.667218e-58 | 1.369537e-54 |
| MsG0180003994.01 | MsG0880047226.01 | 0.842135 | 3.110612e-58 | 4.671567e-55 |
| MsG0180003994.01 | MsG0880047431.01 | 0.805065 | 1.598287e-49 | 8.375127e-47 |
| MsG0180003994.01 | MsG0880047666.01 | 0.819188 | 1.323926e-52 | 1.011732e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003994.01.T01 | MTR_1g072470 | 93.805 | 226 | 14 | 0 | 5 | 230 | 74 | 299 | 4.90e-157 | 437 |
| MsG0180003994.01.T01 | MTR_4g107220 | 74.009 | 227 | 57 | 2 | 5 | 230 | 73 | 298 | 3.45e-123 | 351 |
| MsG0180003994.01.T01 | MTR_1g072500 | 77.434 | 226 | 46 | 3 | 5 | 230 | 72 | 292 | 4.90e-123 | 351 |
| MsG0180003994.01.T01 | MTR_1g062540 | 74.449 | 227 | 56 | 2 | 6 | 230 | 75 | 301 | 5.16e-122 | 348 |
| MsG0180003994.01.T01 | MTR_1g072490 | 73.894 | 226 | 55 | 3 | 5 | 230 | 72 | 293 | 3.26e-120 | 343 |
| MsG0180003994.01.T01 | MTR_1g062500 | 71.366 | 227 | 61 | 4 | 6 | 230 | 73 | 297 | 1.13e-112 | 325 |
| MsG0180003994.01.T01 | MTR_1g072490 | 65.644 | 163 | 52 | 3 | 5 | 167 | 72 | 230 | 1.54e-70 | 215 |
| MsG0180003994.01.T01 | MTR_1g062440 | 73.228 | 127 | 34 | 0 | 104 | 230 | 57 | 183 | 2.28e-66 | 203 |
| MsG0180003994.01.T01 | MTR_1g062530 | 66.061 | 165 | 52 | 4 | 5 | 167 | 72 | 234 | 3.76e-66 | 204 |
| MsG0180003994.01.T01 | MTR_1g062510 | 88.679 | 53 | 6 | 0 | 178 | 230 | 14 | 66 | 8.99e-29 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003994.01.T01 | AT1G03210 | 53.947 | 228 | 88 | 5 | 5 | 230 | 74 | 286 | 3.70e-79 | 239 |
| MsG0180003994.01.T01 | AT4G02860 | 52.402 | 229 | 98 | 5 | 5 | 230 | 93 | 313 | 5.31e-78 | 237 |
| MsG0180003994.01.T01 | AT1G03210 | 46.850 | 254 | 94 | 4 | 5 | 230 | 74 | 314 | 3.38e-73 | 225 |
| MsG0180003994.01.T01 | AT4G02850 | 45.455 | 242 | 104 | 2 | 5 | 230 | 77 | 306 | 2.07e-71 | 220 |
Find 46 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCATTGACTCCAAATTT+TGG | 0.097056 | 1:+71517776 | None:intergenic |
| TTAACAATTACATCAAATTT+TGG | 0.174266 | 1:+71517878 | None:intergenic |
| TCGAATTTGAACTCTGTAAT+AGG | 0.182305 | 1:+71518155 | None:intergenic |
| TGTCCTCTTTATATCAATTA+TGG | 0.209150 | 1:+71518094 | None:intergenic |
| ACTAGGGAAGTGTGATTTAA+AGG | 0.229073 | 1:-71517573 | MsG0180003994.01.T01:CDS |
| ATTGAATTTGCGACACTATC+TGG | 0.230222 | 1:-71518290 | MsG0180003994.01.T01:CDS |
| GTGTGATTTAAAGGCTTATC+AGG | 0.308479 | 1:-71517564 | MsG0180003994.01.T01:intron |
| GGATGCATCTTATATTGAAT+TGG | 0.326398 | 1:-71518192 | MsG0180003994.01.T01:CDS |
| TGCACTCTTTGCATCTGGTT+TGG | 0.350466 | 1:-71518330 | MsG0180003994.01.T01:CDS |
| TATAAAGAGGACACAAATTC+AGG | 0.350811 | 1:-71518084 | MsG0180003994.01.T01:CDS |
| GATTTGAAGAATTTGCAAAA+TGG | 0.352659 | 1:-71518224 | MsG0180003994.01.T01:CDS |
| TCACATGCACTCTTTGCATC+TGG | 0.361453 | 1:-71518335 | MsG0180003994.01.T01:CDS |
| CCCTAGTTTCTTGCTCCAAT+AGG | 0.378188 | 1:+71517589 | None:intergenic |
| TTCACTTATTTCTCAAGCAT+TGG | 0.393639 | 1:-71518126 | MsG0180003994.01.T01:CDS |
| CACATCAGATACAGAATGTT+AGG | 0.398818 | 1:+71517328 | None:intergenic |
| ATTGTGGATTGGCATCCTAT+TGG | 0.402709 | 1:-71517604 | MsG0180003994.01.T01:CDS |
| CGAATTTGAACTCTGTAATA+GGG | 0.410851 | 1:+71518156 | None:intergenic |
| TCCTAGGTTGTAGTCACATC+AGG | 0.446974 | 1:-71517923 | MsG0180003994.01.T01:intron |
| TCTGGATCATATTATAATAC+AGG | 0.449544 | 1:-71518390 | MsG0180003994.01.T01:CDS |
| AGTGATGGAAGGATGTGTTT+TGG | 0.449987 | 1:-71517363 | MsG0180003994.01.T01:CDS |
| CAATGTGCACTCCCACAAAC+AGG | 0.466512 | 1:+71517623 | None:intergenic |
| AACTCTGTAATAGGGTCAGC+AGG | 0.471059 | 1:+71518164 | None:intergenic |
| CTTATTTCTCAAGCATTGGA+TGG | 0.479686 | 1:-71518122 | MsG0180003994.01.T01:CDS |
| GGGATTGCTCCTCCAGAGTC+GGG | 0.485744 | 1:-71517827 | MsG0180003994.01.T01:CDS |
| TGGGAGTGCACATTGTGGAT+TGG | 0.496288 | 1:-71517615 | MsG0180003994.01.T01:CDS |
| GATGTAATTGTTAAATGTCC+TGG | 0.498911 | 1:-71517869 | MsG0180003994.01.T01:CDS |
| TAGAAATCAAATCCCGACTC+TGG | 0.499245 | 1:+71517815 | None:intergenic |
| TCCTATTGGAGCAAGAAACT+AGG | 0.499747 | 1:-71517590 | MsG0180003994.01.T01:CDS |
| CTTCCATAATTGATATAAAG+AGG | 0.515089 | 1:-71518097 | MsG0180003994.01.T01:CDS |
| ATTGTTAAATGTCCTGGAAG+GGG | 0.544587 | 1:-71517863 | MsG0180003994.01.T01:CDS |
| TTTGCAAAATGGTAAAGCTA+AGG | 0.557399 | 1:-71518213 | MsG0180003994.01.T01:CDS |
| TAATTGTTAAATGTCCTGGA+AGG | 0.564168 | 1:-71517865 | MsG0180003994.01.T01:CDS |
| CCTATTGGAGCAAGAAACTA+GGG | 0.566460 | 1:-71517589 | MsG0180003994.01.T01:CDS |
| AGGGATTGCTCCTCCAGAGT+CGG | 0.567221 | 1:-71517828 | MsG0180003994.01.T01:CDS |
| CCCAAAATTTGGAGTCAATG+AGG | 0.570026 | 1:-71517777 | MsG0180003994.01.T01:intron |
| TGGGAAGGCTATTACAGTGA+TGG | 0.573234 | 1:-71517378 | MsG0180003994.01.T01:CDS |
| AATTGTTAAATGTCCTGGAA+GGG | 0.577074 | 1:-71517864 | MsG0180003994.01.T01:CDS |
| GTGAAGCTGCTAATGTGGCA+TGG | 0.580569 | 1:+71518354 | None:intergenic |
| TTTGTTCAGGCATCAGCTAG+AGG | 0.605347 | 1:-71517452 | MsG0180003994.01.T01:intron |
| TGAAGCTGCTAATGTGGCAT+GGG | 0.609399 | 1:+71518355 | None:intergenic |
| GTTTGTGGGAGTGCACATTG+TGG | 0.618544 | 1:-71517620 | MsG0180003994.01.T01:CDS |
| AAGGCTATTACAGTGATGGA+AGG | 0.629492 | 1:-71517374 | MsG0180003994.01.T01:CDS |
| TTGTTAAATGTCCTGGAAGG+GGG | 0.633343 | 1:-71517862 | MsG0180003994.01.T01:CDS |
| GTTCAGGCATCAGCTAGAGG+AGG | 0.652622 | 1:-71517449 | MsG0180003994.01.T01:intron |
| TGCATGTGAAGCTGCTAATG+TGG | 0.657511 | 1:+71518349 | None:intergenic |
| AAATCAAATCCCGACTCTGG+AGG | 0.679685 | 1:+71517818 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAATAAAAAAGCATATT+AGG | + | Chr1:71517689-71517708 | None:intergenic | 15.0% |
| !!! | TTAACAATTACATCAAATTT+TGG | + | Chr1:71517855-71517874 | None:intergenic | 15.0% |
| !! | AAAAAAATCTCAATGATCAA+TGG | - | Chr1:71517476-71517495 | MsG0180003994.01.T01:intron | 20.0% |
| !! | CAAAAAACAACAAAAGTAAA+CGG | + | Chr1:71517750-71517769 | None:intergenic | 20.0% |
| !!! | AGTAACTCATTTTTCTTTTT+AGG | - | Chr1:71518082-71518101 | MsG0180003994.01.T01:CDS | 20.0% |
| !!! | ATTGATCATTGAGATTTTTT+TGG | + | Chr1:71517477-71517496 | None:intergenic | 20.0% |
| ! | AGATTGCAATATATTTGTTC+AGG | - | Chr1:71518265-71518284 | MsG0180003994.01.T01:CDS | 25.0% |
| ! | CTTCCATAATTGATATAAAG+AGG | - | Chr1:71517633-71517652 | MsG0180003994.01.T01:intron | 25.0% |
| ! | GATAATAAGCTTCATAATGT+TGG | + | Chr1:71517782-71517801 | None:intergenic | 25.0% |
| ! | GATTTGAAGAATTTGCAAAA+TGG | - | Chr1:71517506-71517525 | MsG0180003994.01.T01:intron | 25.0% |
| ! | TGTCCTCTTTATATCAATTA+TGG | + | Chr1:71517639-71517658 | None:intergenic | 25.0% |
| AATTGTTAAATGTCCTGGAA+GGG | - | Chr1:71517866-71517885 | MsG0180003994.01.T01:CDS | 30.0% | |
| CCTGTATTATAATATGATCC+AGG | + | Chr1:71517343-71517362 | None:intergenic | 30.0% | |
| CGAATTTGAACTCTGTAATA+GGG | + | Chr1:71517577-71517596 | None:intergenic | 30.0% | |
| CTTCATTCATTGCATAGTTA+AGG | + | Chr1:71518028-71518047 | None:intergenic | 30.0% | |
| GACAAAGATAATCACAATGA+GGG | + | Chr1:71518227-71518246 | None:intergenic | 30.0% | |
| GATGTAATTGTTAAATGTCC+TGG | - | Chr1:71517861-71517880 | MsG0180003994.01.T01:CDS | 30.0% | |
| GGATGCATCTTATATTGAAT+TGG | - | Chr1:71517538-71517557 | MsG0180003994.01.T01:intron | 30.0% | |
| TAATTGTTAAATGTCCTGGA+AGG | - | Chr1:71517865-71517884 | MsG0180003994.01.T01:CDS | 30.0% | |
| TATAAAGAGGACACAAATTC+AGG | - | Chr1:71517646-71517665 | MsG0180003994.01.T01:intron | 30.0% | |
| TCGAATTTGAACTCTGTAAT+AGG | + | Chr1:71517578-71517597 | None:intergenic | 30.0% | |
| TGACAAAGATAATCACAATG+AGG | + | Chr1:71518228-71518247 | None:intergenic | 30.0% | |
| TGTGATTATCTTTGTCATTG+TGG | - | Chr1:71518231-71518250 | MsG0180003994.01.T01:CDS | 30.0% | |
| TTTGCAAAATGGTAAAGCTA+AGG | - | Chr1:71517517-71517536 | MsG0180003994.01.T01:intron | 30.0% | |
| ! | TTCACTTATTTCTCAAGCAT+TGG | - | Chr1:71517604-71517623 | MsG0180003994.01.T01:CDS | 30.0% |
| ACCATCACGAATGATATCTT+AGG | - | Chr1:71517723-71517742 | MsG0180003994.01.T01:intron | 35.0% | |
| AGCTTATTATCATCTCTCCT+AGG | - | Chr1:71517791-71517810 | MsG0180003994.01.T01:CDS | 35.0% | |
| ATTGAATTTGCGACACTATC+TGG | - | Chr1:71517440-71517459 | MsG0180003994.01.T01:CDS | 35.0% | |
| ATTGTTAAATGTCCTGGAAG+GGG | - | Chr1:71517867-71517886 | MsG0180003994.01.T01:CDS | 35.0% | |
| GTGTGATTTAAAGGCTTATC+AGG | - | Chr1:71518166-71518185 | MsG0180003994.01.T01:CDS | 35.0% | |
| TCCTAAGATATCATTCGTGA+TGG | + | Chr1:71517727-71517746 | None:intergenic | 35.0% | |
| ! | ACTAGGGAAGTGTGATTTAA+AGG | - | Chr1:71518157-71518176 | MsG0180003994.01.T01:CDS | 35.0% |
| ! | CGATTTTTCTGCCCAAAATT+TGG | - | Chr1:71517942-71517961 | MsG0180003994.01.T01:intron | 35.0% |
| !! | CTTATTTCTCAAGCATTGGA+TGG | - | Chr1:71517608-71517627 | MsG0180003994.01.T01:CDS | 35.0% |
| !!! | AAACAAAGAGTGTTTTTGCG+TGG | - | Chr1:71518332-71518351 | MsG0180003994.01.T01:CDS | 35.0% |
| !!! | AACAAAGAGTGTTTTTGCGT+GGG | - | Chr1:71518333-71518352 | MsG0180003994.01.T01:CDS | 35.0% |
| !!! | ACCTCATTGACTCCAAATTT+TGG | + | Chr1:71517957-71517976 | None:intergenic | 35.0% |
| !!! | CCTCATTGACTCCAAATTTT+GGG | + | Chr1:71517956-71517975 | None:intergenic | 35.0% |
| !!! | CTTTTTAGGATCCTGTTTGT+GGG | - | Chr1:71518096-71518115 | MsG0180003994.01.T01:CDS | 35.0% |
| !!! | TCTTTTTAGGATCCTGTTTG+TGG | - | Chr1:71518095-71518114 | MsG0180003994.01.T01:CDS | 35.0% |
| CCTATTGGAGCAAGAAACTA+GGG | - | Chr1:71518141-71518160 | MsG0180003994.01.T01:CDS | 40.0% | |
| GAAGGGGGATAATTGTTACA+GGG | - | Chr1:71517883-71517902 | MsG0180003994.01.T01:CDS | 40.0% | |
| TAGAAATCAAATCCCGACTC+TGG | + | Chr1:71517918-71517937 | None:intergenic | 40.0% | |
| TCCTATTGGAGCAAGAAACT+AGG | - | Chr1:71518140-71518159 | MsG0180003994.01.T01:CDS | 40.0% | |
| TTGTTAAATGTCCTGGAAGG+GGG | - | Chr1:71517868-71517887 | MsG0180003994.01.T01:CDS | 40.0% | |
| ! | AAGGCTATTACAGTGATGGA+AGG | - | Chr1:71518356-71518375 | MsG0180003994.01.T01:CDS | 40.0% |
| ! | CCCAAAATTTGGAGTCAATG+AGG | - | Chr1:71517953-71517972 | MsG0180003994.01.T01:intron | 40.0% |
| !! | AGTGATGGAAGGATGTGTTT+TGG | - | Chr1:71518367-71518386 | MsG0180003994.01.T01:CDS | 40.0% |
| !! | ATTGTGGATTGGCATCCTAT+TGG | - | Chr1:71518126-71518145 | MsG0180003994.01.T01:CDS | 40.0% |
| AAATCAAATCCCGACTCTGG+AGG | + | Chr1:71517915-71517934 | None:intergenic | 45.0% | |
| AACTCTGTAATAGGGTCAGC+AGG | + | Chr1:71517569-71517588 | None:intergenic | 45.0% | |
| CCCTAGTTTCTTGCTCCAAT+AGG | + | Chr1:71518144-71518163 | None:intergenic | 45.0% | |
| GGAAGGGGGATAATTGTTAC+AGG | - | Chr1:71517882-71517901 | MsG0180003994.01.T01:CDS | 45.0% | |
| GTAACAATTATCCCCCTTCC+AGG | + | Chr1:71517882-71517901 | None:intergenic | 45.0% | |
| TCACATGCACTCTTTGCATC+TGG | - | Chr1:71517395-71517414 | MsG0180003994.01.T01:CDS | 45.0% | |
| TCCTAGGTTGTAGTCACATC+AGG | - | Chr1:71517807-71517826 | MsG0180003994.01.T01:CDS | 45.0% | |
| TCCTGATGTGACTACAACCT+AGG | + | Chr1:71517811-71517830 | None:intergenic | 45.0% | |
| TGAAGCTGCTAATGTGGCAT+GGG | + | Chr1:71517378-71517397 | None:intergenic | 45.0% | |
| TGCACTCTTTGCATCTGGTT+TGG | - | Chr1:71517400-71517419 | MsG0180003994.01.T01:CDS | 45.0% | |
| TGCATGTGAAGCTGCTAATG+TGG | + | Chr1:71517384-71517403 | None:intergenic | 45.0% | |
| TGGGAAGGCTATTACAGTGA+TGG | - | Chr1:71518352-71518371 | MsG0180003994.01.T01:CDS | 45.0% | |
| TTTGTTCAGGCATCAGCTAG+AGG | - | Chr1:71518278-71518297 | MsG0180003994.01.T01:CDS | 45.0% | |
| !!! | AAGAGTGTTTTTGCGTGGGA+AGG | - | Chr1:71518337-71518356 | MsG0180003994.01.T01:CDS | 45.0% |
| CAATGTGCACTCCCACAAAC+AGG | + | Chr1:71518110-71518129 | None:intergenic | 50.0% | |
| GTGAAGCTGCTAATGTGGCA+TGG | + | Chr1:71517379-71517398 | None:intergenic | 50.0% | |
| ! | GTTTGTGGGAGTGCACATTG+TGG | - | Chr1:71518110-71518129 | MsG0180003994.01.T01:CDS | 50.0% |
| ! | TGGGAGTGCACATTGTGGAT+TGG | - | Chr1:71518115-71518134 | MsG0180003994.01.T01:CDS | 50.0% |
| AGGGATTGCTCCTCCAGAGT+CGG | - | Chr1:71517902-71517921 | MsG0180003994.01.T01:CDS | 55.0% | |
| GTTCAGGCATCAGCTAGAGG+AGG | - | Chr1:71518281-71518300 | MsG0180003994.01.T01:CDS | 55.0% | |
| GGGATTGCTCCTCCAGAGTC+GGG | - | Chr1:71517903-71517922 | MsG0180003994.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 71517341 | 71518411 | 71517341 | ID=MsG0180003994.01;Name=MsG0180003994.01 |
| Chr1 | mRNA | 71517341 | 71518411 | 71517341 | ID=MsG0180003994.01.T01;Parent=MsG0180003994.01;Name=MsG0180003994.01.T01;_AED=0.48;_eAED=0.48;_QI=0|1|0.75|1|1|1|4|17|230 |
| Chr1 | exon | 71517341 | 71517465 | 71517341 | ID=MsG0180003994.01.T01:exon:30874;Parent=MsG0180003994.01.T01 |
| Chr1 | exon | 71517565 | 71517648 | 71517565 | ID=MsG0180003994.01.T01:exon:30873;Parent=MsG0180003994.01.T01 |
| Chr1 | exon | 71517778 | 71517939 | 71517778 | ID=MsG0180003994.01.T01:exon:30872;Parent=MsG0180003994.01.T01 |
| Chr1 | exon | 71518073 | 71518411 | 71518073 | ID=MsG0180003994.01.T01:exon:30871;Parent=MsG0180003994.01.T01 |
| Chr1 | CDS | 71518073 | 71518411 | 71518073 | ID=MsG0180003994.01.T01:cds;Parent=MsG0180003994.01.T01 |
| Chr1 | CDS | 71517778 | 71517939 | 71517778 | ID=MsG0180003994.01.T01:cds;Parent=MsG0180003994.01.T01 |
| Chr1 | CDS | 71517565 | 71517648 | 71517565 | ID=MsG0180003994.01.T01:cds;Parent=MsG0180003994.01.T01 |
| Chr1 | CDS | 71517358 | 71517465 | 71517358 | ID=MsG0180003994.01.T01:cds;Parent=MsG0180003994.01.T01 |
| Chr1 | three_prime_UTR | 71517341 | 71517357 | 71517341 | ID=MsG0180003994.01.T01:three_prime_utr;Parent=MsG0180003994.01.T01 |
| Gene Sequence |
| Protein sequence |
