AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006017.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006017.01.T01 MTR_1g111980 80.417 240 7 2 1 200 1 240 1.00e-132 374
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006017.01.T01 AT2G25100 64.167 240 45 3 1 200 1 239 3.74e-105 304
MsG0180006017.01.T01 AT2G25100 57.917 240 41 4 1 200 1 220 7.82e-88 260

Find 13 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCACAAACATTCTATCTT+TGG 0.271558 1:+98893128 MsG0180006017.01.T01:exon
CTGAAAACAAACTCAAAATA+AGG 0.335748 1:-98893348 None:intergenic
AACATTAGTCAGGTTTAGTT+GGG 0.344847 1:+98893157 MsG0180006017.01.T01:exon
TCTAGCCAAGACTTGGTTGC+AGG 0.363522 1:-98893104 None:intergenic
CAACATTAGTCAGGTTTAGT+TGG 0.397868 1:+98893156 MsG0180006017.01.T01:exon
CAACTAAACCTGACTAATGT+TGG 0.422536 1:-98893155 None:intergenic
AAGGTGGCACTGAAGTCTTA+TGG 0.459123 1:+98893201 MsG0180006017.01.T01:exon
GTGATCTTCTAGCCAAGACT+TGG 0.469330 1:-98893111 None:intergenic
TAGATCCTGCAACCAAGTCT+TGG 0.525753 1:+98893099 MsG0180006017.01.T01:intron
GTATACAGTCACAGAATGCA+TGG 0.593052 1:-98893245 None:intergenic
ACATTAGTCAGGTTTAGTTG+GGG 0.616439 1:+98893158 MsG0180006017.01.T01:exon
AAAACAAACTCAAAATAAGG+TGG 0.655560 1:-98893345 None:intergenic
AAATCCTTAGAAAACAAGTG+CGG 0.739215 1:-98893267 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAGAATTATAATTAAAAA+TGG - Chr1:98891394-98891413 None:intergenic 10.0%
!! GAGAAAATAAAAATATAATA+CGG + Chr1:98890851-98890870 MsG0180006017.01.T01:exon 10.0%
!!! CATTTTAGTTACAATAAATA+TGG + Chr1:98893059-98893078 MsG0180006017.01.T01:intron 15.0%
!! AAAAAAAAAGCAAAACCAAA+AGG - Chr1:98892331-98892350 None:intergenic 20.0%
!! AAAGAAGAAATGATATTTGT+AGG - Chr1:98890919-98890938 None:intergenic 20.0%
!! AGATGTGAAATGTATAATTT+GGG + Chr1:98892669-98892688 MsG0180006017.01.T01:intron 20.0%
!! CTACTATCATTAATTCATTA+TGG - Chr1:98892087-98892106 None:intergenic 20.0%
!! TTCTTCCATTAAAATATGTT+GGG - Chr1:98892508-98892527 None:intergenic 20.0%
!!! ATGTTTGTTTTGTATGAAAA+AGG - Chr1:98890952-98890971 None:intergenic 20.0%
!!! CAATAAATATGGTTATGTTT+TGG + Chr1:98893070-98893089 MsG0180006017.01.T01:intron 20.0%
!!! CTTTCTTTTCAATTTAATGA+TGG + Chr1:98892358-98892377 MsG0180006017.01.T01:intron 20.0%
!!! TAATGAGTTGGATAAAAATA+TGG + Chr1:98891927-98891946 MsG0180006017.01.T01:intron 20.0%
! AAAACAAACTCAAAATAAGG+TGG - Chr1:98893348-98893367 None:intergenic 25.0%
! AACGTAAATACTCAAGTTTA+AGG + Chr1:98891571-98891590 MsG0180006017.01.T01:intron 25.0%
! ACGTAAATACTCAAGTTTAA+GGG + Chr1:98891572-98891591 MsG0180006017.01.T01:intron 25.0%
! CATTAAAATATGTTGGGAAA+AGG - Chr1:98892502-98892521 None:intergenic 25.0%
! CTGAAAACAAACTCAAAATA+AGG - Chr1:98893351-98893370 None:intergenic 25.0%
! GAGATGTGAAATGTATAATT+TGG + Chr1:98892668-98892687 MsG0180006017.01.T01:intron 25.0%
! GTTCTTCCATTAAAATATGT+TGG - Chr1:98892509-98892528 None:intergenic 25.0%
! TAAACCATCAAATTCAATCT+GGG + Chr1:98891520-98891539 MsG0180006017.01.T01:intron 25.0%
! TAATTAAAAATGGAAAGCTC+TGG - Chr1:98891384-98891403 None:intergenic 25.0%
! TTCCTGTTAAAATTACAACA+AGG - Chr1:98892389-98892408 None:intergenic 25.0%
!! TCAGTTTTCAAAACATTTTC+TGG + Chr1:98893367-98893386 MsG0180006017.01.T01:exon 25.0%
!! TTTTCCATCTATCAAATTTG+TGG + Chr1:98892756-98892775 MsG0180006017.01.T01:CDS 25.0%
!!! CTTTTCCCAACATATTTTAA+TGG + Chr1:98892500-98892519 MsG0180006017.01.T01:intron 25.0%
!!! GTTTGGTTTCATAACATTTT+CGG + Chr1:98893290-98893309 MsG0180006017.01.T01:exon 25.0%
!!! TTCCTTGTTGTAATTTTAAC+AGG + Chr1:98892384-98892403 MsG0180006017.01.T01:intron 25.0%
!!! TTGTTTTCTAAGGATTTGTT+TGG + Chr1:98893273-98893292 MsG0180006017.01.T01:exon 25.0%
!!! TTTGGTTTCATAACATTTTC+GGG + Chr1:98893291-98893310 MsG0180006017.01.T01:exon 25.0%
AAATCCTTAGAAAACAAGTG+CGG - Chr1:98893270-98893289 None:intergenic 30.0%
AACATTAGTCAGGTTTAGTT+GGG + Chr1:98893157-98893176 MsG0180006017.01.T01:exon 30.0%
ACCTATATTAGAAAAGATGG+TGG + Chr1:98891768-98891787 MsG0180006017.01.T01:intron 30.0%
AGATCTAGAGATTAATGAGT+TGG + Chr1:98891915-98891934 MsG0180006017.01.T01:intron 30.0%
AGCACCTATATTAGAAAAGA+TGG + Chr1:98891765-98891784 MsG0180006017.01.T01:intron 30.0%
ATGACATTAAAGAGAGAGTT+CGG + Chr1:98891740-98891759 MsG0180006017.01.T01:intron 30.0%
ATGAGAATTGAGAAGAAAGA+AGG + Chr1:98891138-98891157 MsG0180006017.01.T01:exon 30.0%
CAGGTTTATATTGATACAGT+TGG + Chr1:98892697-98892716 MsG0180006017.01.T01:intron 30.0%
CTTATCCCACTAAATAGAAT+CGG - Chr1:98891991-98892010 None:intergenic 30.0%
GATCACAAACATTCTATCTT+TGG + Chr1:98893128-98893147 MsG0180006017.01.T01:exon 30.0%
GTAAACCATCAAATTCAATC+TGG + Chr1:98891519-98891538 MsG0180006017.01.T01:intron 30.0%
TACGCTTCTTATAAGTACTT+GGG + Chr1:98892613-98892632 MsG0180006017.01.T01:intron 30.0%
TATAAACAACCATAGACCAT+AGG - Chr1:98891258-98891277 None:intergenic 30.0%
TGAGAATTGAGAAGAAAGAA+GGG + Chr1:98891139-98891158 MsG0180006017.01.T01:exon 30.0%
TTGAAAGCCAATGATTCTAT+TGG + Chr1:98892231-98892250 MsG0180006017.01.T01:CDS 30.0%
! AACCTTTAATCCAACCTTTT+AGG + Chr1:98892895-98892914 MsG0180006017.01.T01:intron 30.0%
! ATCCATACGACATATTTTGT+TGG - Chr1:98892590-98892609 None:intergenic 30.0%
! CCTTTTCTTACAAGAATAGA+CGG - Chr1:98891022-98891041 None:intergenic 30.0%
! TCCACCATCTTTTCTAATAT+AGG - Chr1:98891772-98891791 None:intergenic 30.0%
! TGGTATATGATAGAGCATTA+TGG + Chr1:98891947-98891966 MsG0180006017.01.T01:intron 30.0%
! TGTTTACTTCTTGAGCATTT+TGG - Chr1:98892295-98892314 None:intergenic 30.0%
!!! ACTTGCAGCTCTTATTTTAA+AGG + Chr1:98893182-98893201 MsG0180006017.01.T01:exon 30.0%
AAGCAAAACCAAAAGGACTA+AGG - Chr1:98892324-98892343 None:intergenic 35.0%
AAGCCAATGATTCTATTGGA+TGG + Chr1:98892235-98892254 MsG0180006017.01.T01:CDS 35.0%
AAGGAGAGTAGATCAAATGA+AGG + Chr1:98891844-98891863 MsG0180006017.01.T01:intron 35.0%
ACATCTCCTATTCTATGTGT+CGG - Chr1:98891497-98891516 None:intergenic 35.0%
ACATTAGTCAGGTTTAGTTG+GGG + Chr1:98893158-98893177 MsG0180006017.01.T01:exon 35.0%
AGACACTAAAAGAAGAGAAG+AGG + Chr1:98892190-98892209 MsG0180006017.01.T01:CDS 35.0%
AGACTCGTAGATTTGTACTA+AGG + Chr1:98891825-98891844 MsG0180006017.01.T01:intron 35.0%
AGCCAATGATTCTATTGGAT+GGG + Chr1:98892236-98892255 MsG0180006017.01.T01:CDS 35.0%
ATGTATAATTTGGGCTCTTC+AGG + Chr1:98892678-98892697 MsG0180006017.01.T01:intron 35.0%
CAAATTTGTGGTTGCAAAGA+AGG + Chr1:98892768-98892787 MsG0180006017.01.T01:CDS 35.0%
CAACATTAGTCAGGTTTAGT+TGG + Chr1:98893156-98893175 MsG0180006017.01.T01:exon 35.0%
CAACTAAACCTGACTAATGT+TGG - Chr1:98893158-98893177 None:intergenic 35.0%
CCGTCTATTCTTGTAAGAAA+AGG + Chr1:98891019-98891038 MsG0180006017.01.T01:exon 35.0%
CGATTCTATTTAGTGGGATA+AGG + Chr1:98891989-98892008 MsG0180006017.01.T01:intron 35.0%
GACACTAAAAGAAGAGAAGA+GGG + Chr1:98892191-98892210 MsG0180006017.01.T01:CDS 35.0%
GACCTAAAAGGTTGGATTAA+AGG - Chr1:98892900-98892919 None:intergenic 35.0%
GAGAATTGAGAAGAAAGAAG+GGG + Chr1:98891140-98891159 MsG0180006017.01.T01:exon 35.0%
GATTAAAGGTTGCATGTAGA+CGG - Chr1:98892886-98892905 None:intergenic 35.0%
GCAACCACAAATTTGATAGA+TGG - Chr1:98892763-98892782 None:intergenic 35.0%
GTACGCTTCTTATAAGTACT+TGG + Chr1:98892612-98892631 MsG0180006017.01.T01:intron 35.0%
TGAAGTTAAGAGAAGAGAGT+AGG - Chr1:98891330-98891349 None:intergenic 35.0%
TGACATTAAAGAGAGAGTTC+GGG + Chr1:98891741-98891760 MsG0180006017.01.T01:intron 35.0%
TGATAACATTCACAGGAACT+TGG + Chr1:98892963-98892982 MsG0180006017.01.T01:intron 35.0%
TGCCAACAAAATATGTCGTA+TGG + Chr1:98892585-98892604 MsG0180006017.01.T01:intron 35.0%
TGTCACATTTGCATCTTTGT+TGG + Chr1:98892156-98892175 MsG0180006017.01.T01:intron 35.0%
TTAGTGCAGGAAATTCTACA+CGG - Chr1:98892854-98892873 None:intergenic 35.0%
TTTCAACCGACACATAGAAT+AGG + Chr1:98891488-98891507 MsG0180006017.01.T01:intron 35.0%
! ATGTAGCCGATTCTATTTAG+TGG + Chr1:98891982-98892001 MsG0180006017.01.T01:intron 35.0%
! CTCAAAGTAGCTAAGGTTTT+TGG - Chr1:98891296-98891315 None:intergenic 35.0%
! TGTAGCCGATTCTATTTAGT+GGG + Chr1:98891983-98892002 MsG0180006017.01.T01:intron 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG + Chr1:98891776-98891795 MsG0180006017.01.T01:intron 35.0%
!! TATACCGCACTTGTTTTCTA+AGG + Chr1:98893263-98893282 MsG0180006017.01.T01:exon 35.0%
!! TTGGTTTTCCAACATTAGTC+AGG + Chr1:98893147-98893166 MsG0180006017.01.T01:exon 35.0%
!!! AAGTAGCTAAGGTTTTTGGT+AGG - Chr1:98891292-98891311 None:intergenic 35.0%
!!! TGCAGCTCTTATTTTAAAGG+TGG + Chr1:98893185-98893204 MsG0180006017.01.T01:exon 35.0%
AAGGATAGTCAGATCACTAG+AGG + Chr1:98891863-98891882 MsG0180006017.01.T01:intron 40.0%
ACCACCCAGATTGAATTTGA+TGG - Chr1:98891527-98891546 None:intergenic 40.0%
ACCATCAAATTCAATCTGGG+TGG + Chr1:98891523-98891542 MsG0180006017.01.T01:intron 40.0%
ACGGTAAAACTTCTTAGTGC+AGG - Chr1:98892867-98892886 None:intergenic 40.0%
AGAGATCGAGCTATAGAGAT+TGG + Chr1:98892923-98892942 MsG0180006017.01.T01:intron 40.0%
AGCCCATCCAATAGAATCAT+TGG - Chr1:98892241-98892260 None:intergenic 40.0%
AGTCTGCTGATAACATTCAC+AGG + Chr1:98892956-98892975 MsG0180006017.01.T01:intron 40.0%
AGTCTTTATCCTGTTGTCAG+TGG + Chr1:98892796-98892815 MsG0180006017.01.T01:CDS 40.0%
ATACAACCACACGTAAACAG+TGG - Chr1:98891466-98891485 None:intergenic 40.0%
ATATCACATGACTCTGCCAT+GGG + Chr1:98892428-98892447 MsG0180006017.01.T01:CDS 40.0%
ATGTTGTATGGGACAGTGTT+GGG + Chr1:98891617-98891636 MsG0180006017.01.T01:intron 40.0%
ATTGATACAGTTGGAGATCC+AGG + Chr1:98892706-98892725 MsG0180006017.01.T01:CDS 40.0%
CTAACTAACATCAGAGCAGA+GGG + Chr1:98891078-98891097 MsG0180006017.01.T01:exon 40.0%
CTGAGATGAGAATGTTGCAT+TGG + Chr1:98891680-98891699 MsG0180006017.01.T01:intron 40.0%
GAGAAGAAAGAAGGGGAAAT+GGG + Chr1:98891147-98891166 MsG0180006017.01.T01:exon 40.0%
GAGATCGAGCTATAGAGATT+GGG + Chr1:98892924-98892943 MsG0180006017.01.T01:intron 40.0%
GTATACAGTCACAGAATGCA+TGG - Chr1:98893248-98893267 None:intergenic 40.0%
TAGTGCAGGAAATTCTACAC+GGG - Chr1:98892853-98892872 None:intergenic 40.0%
TCGATCTCTTGTGACCTAAA+AGG - Chr1:98892912-98892931 None:intergenic 40.0%
TCTCTTGTGACCTAAAAGGT+TGG - Chr1:98892908-98892927 None:intergenic 40.0%
TCTTACAAGAATAGACGGTC+CGG - Chr1:98891017-98891036 None:intergenic 40.0%
TGAGAAGAAAGAAGGGGAAA+TGG + Chr1:98891146-98891165 MsG0180006017.01.T01:exon 40.0%
TGCGAAACTCAAAGTAGCTA+AGG - Chr1:98891303-98891322 None:intergenic 40.0%
TGGTGCAAGTATAGTTGCAA+AGG + Chr1:98892816-98892835 MsG0180006017.01.T01:CDS 40.0%
TGTTGATGTCATTGACCCAA+AGG + Chr1:98892260-98892279 MsG0180006017.01.T01:CDS 40.0%
TTATTGCCACTGTTTACGTG+TGG + Chr1:98891457-98891476 MsG0180006017.01.T01:intron 40.0%
TTCAATCTGGGTGGTTGAAA+TGG + Chr1:98891532-98891551 MsG0180006017.01.T01:intron 40.0%
TTGATACAGTTGGAGATCCA+GGG + Chr1:98892707-98892726 MsG0180006017.01.T01:CDS 40.0%
! AAAATGGAAAGCTCTGGCAA+TGG - Chr1:98891378-98891397 None:intergenic 40.0%
! ATCTGAAGTCATGTTAGAGC+TGG - Chr1:98892537-98892556 None:intergenic 40.0%
! CAAACAGACCTTAGTCCTTT+TGG + Chr1:98892313-98892332 MsG0180006017.01.T01:intron 40.0%
! GTTGATAGGGTGCTCAAAAT+GGG + Chr1:98892455-98892474 MsG0180006017.01.T01:CDS 40.0%
! TCTGAAGTCATGTTAGAGCT+GGG - Chr1:98892536-98892555 None:intergenic 40.0%
! TTAGCTACTTTGAGTTTCGC+AGG + Chr1:98891302-98891321 MsG0180006017.01.T01:intron 40.0%
! TTTTGGCAGAGAGTTCCTTT+GGG - Chr1:98892278-98892297 None:intergenic 40.0%
!! AAGATGGTGGAAACTAGGAT+AGG + Chr1:98891781-98891800 MsG0180006017.01.T01:intron 40.0%
!! ATTTTGGCAGAGAGTTCCTT+TGG - Chr1:98892279-98892298 None:intergenic 40.0%
!! TATGTAGCATTGACACAGAC+AGG - Chr1:98892050-98892069 None:intergenic 40.0%
!!! AATGGGAGTGCTTTTAACTG+AGG + Chr1:98892472-98892491 MsG0180006017.01.T01:CDS 40.0%
!!! TAAGGTTTTTGGTAGGAGAG+AGG - Chr1:98891285-98891304 None:intergenic 40.0%
AAATTCTACACGGGAGAGTG+AGG - Chr1:98892844-98892863 None:intergenic 45.0%
AACCATAGACCATAGGACCA+AGG - Chr1:98891251-98891270 None:intergenic 45.0%
AATCTGGGTGGTTGAAATGG+TGG + Chr1:98891535-98891554 MsG0180006017.01.T01:intron 45.0%
ACACTGTCTGAAAGCTTGAC+TGG + Chr1:98890974-98890993 MsG0180006017.01.T01:exon 45.0%
ACTGTCCCATACAACATCGT+TGG - Chr1:98891614-98891633 None:intergenic 45.0%
AGCTTCGCTTCATATTTCCC+TGG - Chr1:98892727-98892746 None:intergenic 45.0%
AGTCATGTTAGAGCTGGGAA+AGG - Chr1:98892531-98892550 None:intergenic 45.0%
ATACTTGCACCACTGACAAC+AGG - Chr1:98892808-98892827 None:intergenic 45.0%
ATCAGAGCAGAGGGTTGAAA+TGG + Chr1:98891087-98891106 MsG0180006017.01.T01:exon 45.0%
CCTAACTAACATCAGAGCAG+AGG + Chr1:98891077-98891096 MsG0180006017.01.T01:exon 45.0%
CCTCTGCTCTGATGTTAGTT+AGG - Chr1:98891080-98891099 None:intergenic 45.0%
CGAGACCAACGATGTTGTAT+GGG + Chr1:98891606-98891625 MsG0180006017.01.T01:intron 45.0%
GATATCACATGACTCTGCCA+TGG + Chr1:98892427-98892446 MsG0180006017.01.T01:CDS 45.0%
GATGTTGTATGGGACAGTGT+TGG + Chr1:98891616-98891635 MsG0180006017.01.T01:intron 45.0%
GTGATCTTCTAGCCAAGACT+TGG - Chr1:98893114-98893133 None:intergenic 45.0%
TAGATCCTGCAACCAAGTCT+TGG + Chr1:98893099-98893118 MsG0180006017.01.T01:intron 45.0%
! AAGGTGGCACTGAAGTCTTA+TGG + Chr1:98893201-98893220 MsG0180006017.01.T01:exon 45.0%
! AATGGGATCTGAAGCTGGTA+TGG + Chr1:98891164-98891183 MsG0180006017.01.T01:exon 45.0%
! ATAATGGGAATCGACGAAGC+TGG + Chr1:98891213-98891232 MsG0180006017.01.T01:CDS 45.0%
! ATCTGAAGCTGGTATGGTTC+CGG + Chr1:98891170-98891189 MsG0180006017.01.T01:CDS 45.0%
! ATGGTGGAAACTAGGATAGG+TGG + Chr1:98891784-98891803 MsG0180006017.01.T01:intron 45.0%
! CCATACAACATCGTTGGTCT+CGG - Chr1:98891608-98891627 None:intergenic 45.0%
! CGTTGATAGGGTGCTCAAAA+TGG + Chr1:98892454-98892473 MsG0180006017.01.T01:CDS 45.0%
! GAAATGGCGGGAAGTTGAAA+AGG + Chr1:98891103-98891122 MsG0180006017.01.T01:exon 45.0%
! TTTTGAGCACCCTATCAACG+AGG - Chr1:98892454-98892473 None:intergenic 45.0%
AAGCTGGTATGGTTCCGGAA+TGG + Chr1:98891175-98891194 MsG0180006017.01.T01:CDS 50.0%
ACTAGAGGCAGAGGAGGATT+AGG + Chr1:98891878-98891897 MsG0180006017.01.T01:intron 50.0%
AGAGCAGAGGGTTGAAATGG+CGG + Chr1:98891090-98891109 MsG0180006017.01.T01:exon 50.0%
AGCTGGTATGGTTCCGGAAT+GGG + Chr1:98891176-98891195 MsG0180006017.01.T01:CDS 50.0%
AGTCAGATCACTAGAGGCAG+AGG + Chr1:98891869-98891888 MsG0180006017.01.T01:intron 50.0%
AGTCATGACCTACTCACCTC+CGG - Chr1:98893000-98893019 None:intergenic 50.0%
CATTCACAGGAACTTGGCTC+CGG + Chr1:98892969-98892988 MsG0180006017.01.T01:intron 50.0%
CCGAGACCAACGATGTTGTA+TGG + Chr1:98891605-98891624 MsG0180006017.01.T01:intron 50.0%
GCATCGGAGGGTTGCATAAT+GGG + Chr1:98891198-98891217 MsG0180006017.01.T01:CDS 50.0%
GGTCCGGTTCAATTGAGAAC+CGG - Chr1:98891001-98891020 None:intergenic 50.0%
GTCCTTGGTCCTATGGTCTA+TGG + Chr1:98891246-98891265 MsG0180006017.01.T01:CDS 50.0%
GTCTGAAAGCTTGACTGGAC+CGG + Chr1:98890979-98890998 MsG0180006017.01.T01:exon 50.0%
TAGACCATAGGACCAAGGAC+AGG - Chr1:98891246-98891265 None:intergenic 50.0%
TATGGTTCCGGAATGGGCAT+CGG + Chr1:98891182-98891201 MsG0180006017.01.T01:CDS 50.0%
! AGGAGAGCGCGATACAACTA+GGG - Chr1:98891060-98891079 None:intergenic 50.0%
! GGACCGGTTCTCAATTGAAC+CGG + Chr1:98890995-98891014 MsG0180006017.01.T01:exon 50.0%
! TAGGAGAGCGCGATACAACT+AGG - Chr1:98891061-98891080 None:intergenic 50.0%
! TCTAGCCAAGACTTGGTTGC+AGG - Chr1:98893107-98893126 None:intergenic 50.0%
AGGTCCTGTCCTTGGTCCTA+TGG + Chr1:98891239-98891258 MsG0180006017.01.T01:CDS 55.0%
CAGATCACTAGAGGCAGAGG+AGG + Chr1:98891872-98891891 MsG0180006017.01.T01:intron 55.0%
CTACTCACCTCCGGGATATC+CGG - Chr1:98892991-98893010 None:intergenic 55.0%
GAACTTGGCTCCGGATATCC+CGG + Chr1:98892978-98892997 MsG0180006017.01.T01:CDS 55.0%
GAGCAGAGGGTTGAAATGGC+GGG + Chr1:98891091-98891110 MsG0180006017.01.T01:exon 55.0%
GCGCGATACAACTAGGGCAA+AGG - Chr1:98891054-98891073 None:intergenic 55.0%
GGAATCGACGAAGCTGGAAG+AGG + Chr1:98891219-98891238 MsG0180006017.01.T01:CDS 55.0%
GTCATGACCTACTCACCTCC+GGG - Chr1:98892999-98893018 None:intergenic 55.0%
TGCCATGGGCCTCGTTGATA+GGG + Chr1:98892442-98892461 MsG0180006017.01.T01:CDS 55.0%
! GGCATCGGAGGGTTGCATAA+TGG + Chr1:98891197-98891216 MsG0180006017.01.T01:CDS 55.0%
! GGGGAAATGGGATCTGAAGC+TGG + Chr1:98891159-98891178 MsG0180006017.01.T01:exon 55.0%
CAACCCTCCGATGCCCATTC+CGG - Chr1:98891192-98891211 None:intergenic 60.0%
CACCCTATCAACGAGGCCCA+TGG - Chr1:98892447-98892466 None:intergenic 60.0%
CGGATATCCCGGAGGTGAGT+AGG + Chr1:98892989-98893008 MsG0180006017.01.T01:intron 60.0%
CTGCCATGGGCCTCGTTGAT+AGG + Chr1:98892441-98892460 MsG0180006017.01.T01:CDS 60.0%
GCTGGAAGAGGTCCTGTCCT+TGG + Chr1:98891231-98891250 MsG0180006017.01.T01:CDS 60.0%
!! GTTCCGGAATGGGCATCGGA+GGG + Chr1:98891186-98891205 MsG0180006017.01.T01:CDS 60.0%
CTTGGCTCCGGATATCCCGG+AGG + Chr1:98892981-98893000 MsG0180006017.01.T01:CDS 65.0%
!! GGTTCCGGAATGGGCATCGG+AGG + Chr1:98891185-98891204 MsG0180006017.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 98890838 98893448 98890838 ID=MsG0180006017.01;
Chr1 mRNA 98890838 98893448 98890838 ID=MsG0180006017.01.T01;Parent=MsG0180006017.01
Chr1 exon 98890838 98891267 98890838 ID=MsG0180006017.01.T01.exon;Parent=MsG0180006017.01.T01
Chr1 CDS 98891165 98891267 98891165 ID=MsG0180006017.01.T01.cds;Parent=MsG0180006017.01.T01
Chr1 CDS 98892184 98892307 98892184 ID=MsG0180006017.01.T01.cds;Parent=MsG0180006017.01.T01
Chr1 exon 98892184 98892307 98892184 ID=MsG0180006017.01.T01.exon;Parent=MsG0180006017.01.T01
Chr1 CDS 98892406 98892493 98892406 ID=MsG0180006017.01.T01.cds;Parent=MsG0180006017.01.T01
Chr1 exon 98892406 98892493 98892406 ID=MsG0180006017.01.T01.exon;Parent=MsG0180006017.01.T01
Chr1 CDS 98892700 98892837 98892700 ID=MsG0180006017.01.T01.cds;Parent=MsG0180006017.01.T01
Chr1 exon 98892700 98892837 98892700 ID=MsG0180006017.01.T01.exon;Parent=MsG0180006017.01.T01
Chr1 CDS 98892978 98893002 98892978 ID=MsG0180006017.01.T01.cds;Parent=MsG0180006017.01.T01
Chr1 exon 98892978 98893002 98892978 ID=MsG0180006017.01.T01.exon;Parent=MsG0180006017.01.T01
Chr1 CDS 98893102 98893226 98893102 ID=MsG0180006017.01.T01.cds;Parent=MsG0180006017.01.T01
Chr1 exon 98893102 98893448 98893102 ID=MsG0180006017.01.T01.exon;Parent=MsG0180006017.01.T01
Gene Sequence

>MsG0180006017.01.T01

ATGGGATCTGAAGCTGGTATGGTTCCGGAATGGGCATCGGAGGGTTGCATAATGGGAATCGACGAAGCTGGAAGAGGTCCTGTCCTTGGTCCTATGGTCTATGATTCTAAGACACTAAAAGAAGAGAAGAGGGAAGAATTGTTTGAAACTTTGAAAGCCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCAAAGGAACTCTCTGCCAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGACTCTGCCATGGGCCTCGTTGATAGGGTGCTCAAAATGGGAGTGCTTTTAACTGAGGTTTATATTGATACAGTTGGAGATCCAGGGAAATATGAAGCGAAGCTGTCTAAAAATTTTCCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCAAGTATAGTTGCAAAGGAACTTGGCTCCGGATATCCCGGAGATCCTGCAACCAAGTCTTGGCTAGAAGATCACAAACATTCTATCTTTGGTTTTCCAACATTAGTCAGGTTTAGTTGGGGAACTTGCAGCTCTTATTTTAAAGGTGGCACTGAAGTCTTATGGTAA

Protein sequence

>MsG0180006017.01.T01

MGSEAGMVPEWASEGCIMGIDEAGRGPVLGPMVYDSKTLKEEKREELFETLKANDSIGWAVDVIDPKELSAKMLKKNKINLNEISHDSAMGLVDRVLKMGVLLTEVYIDTVGDPGKYEAKLSKNFPSIKFVVAKKADSLYPVVSGASIVAKELGSGYPGDPATKSWLEDHKHSIFGFPTLVRFSWGTCSSYFKGGTEVLW*