AlfalfaGEDB | MsG0580025115.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025115.01

KEGG: K03029
GO: -
PFAM: PF02809 PF13519

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025115.01.T01	XP_024640362.1	97.917	384	3	1	1	379	1	384	0	761

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025115.01.T01	O82143	68.895	389	108	4	1	379	1	386	2.87E-164	469

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048309.01	MsG0580025115.01	0.802146	6.444167e-49	3.133225e-46
MsG0080049059.01	MsG0580025115.01	0.804937	1.699145e-49	8.875097e-47
MsG0180000101.01	MsG0580025115.01	0.821207	4.563469e-53	3.689106e-50
MsG0180000235.01	MsG0580025115.01	0.805308	1.421229e-49	7.493850e-47
MsG0180000293.01	MsG0580025115.01	0.849693	2.745679e-60	5.248606e-57
MsG0180000585.01	MsG0580025115.01	0.816763	4.676627e-52	3.343375e-49
MsG0180000680.01	MsG0580025115.01	0.811593	6.479166e-51	4.026889e-48
MsG0180000797.01	MsG0580025115.01	0.824672	7.108894e-54	6.340272e-51
MsG0180000799.01	MsG0580025115.01	0.820988	5.126024e-53	4.118910e-50
MsG0180001043.01	MsG0580025115.01	0.822666	2.096407e-53	1.766170e-50

Showing 1 to 10 of 274 entries

Previous1 2 3 4 5…28Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0180000763.01	MsG0580025115.01	PPI
MsG0580024181.01	MsG0580025115.01	PPI
MsG0580025115.01	MsG0280011059.01	PPI
MsG0580025115.01	MsG0080047814.01	PPI
MsG0580025115.01	MsG0180000135.01	PPI
MsG0580025115.01	MsG0380015066.01	PPI
MsG0580025115.01	MsG0680035574.01	PPI
MsG0580025115.01	MsG0380016433.01	PPI
MsG0580025115.01	MsG0580024507.01	PPI
MsG0580025115.01	MsG0380017800.01	PPI

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025115.01.T01	MTR_5g022440	97.917	384	3	1	1	379	1	384	0.0	760
MsG0580025115.01.T01	MTR_8g075390	80.928	388	51	5	1	378	1	375	0.0	551

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025115.01.T01	AT4G38630	66.146	384	110	7	1	379	1	369	1.37e-164	467

Showing 1 to 1 of 1 entries

Previous1Next

Find 101 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCAGATTGATTTGGAA+TGG	0.493549	5:-14015515	None:intergenic
AAGAAAATGTTGGAGATGAT+AGG	0.372029	5:+14012518	MsG0580025115.01.T01:CDS
AAGATATTGGCTTGCATGCA+TGG	0.473341	5:+14011176	MsG0580025115.01.T01:CDS
AAGCGATCTAGGCAAGATAT+TGG	0.447295	5:+14011163	MsG0580025115.01.T01:CDS
AATTCCTTTGGCAGCTTCCC+GGG	0.364317	5:+14015452	MsG0580025115.01.T01:intron
AATTCTGAATGGATGCGTAA+CGG	0.621250	5:+14010649	MsG0580025115.01.T01:CDS
ACAAGATGCGACAATGACTG+AGG	0.653586	5:+14013047	MsG0580025115.01.T01:CDS
ACAATCTAGTCACGTCTGAC+TGG	0.487951	5:-14015322	None:intergenic
ACGCAAGAATATCAGATACA+CGG	0.643826	5:-14015358	None:intergenic
ACTGATTCAGGACTAGAAAT+AGG	0.363462	5:+14012292	MsG0580025115.01.T01:intron

Showing 1 to 10 of 101 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGTGGATACCTCAAAA+AGG	-	Chr5:14014335-14014354	None:intergenic	30.0%
AAAAGTTAAAACAACCACCA+TGG	-	Chr5:14015230-14015249	None:intergenic	30.0%
AAATATAGAATCCCACATTC+AGG	-	Chr5:14015189-14015208	None:intergenic	30.0%
AACTGTGAACCATTAAAAAG+TGG	-	Chr5:14014349-14014368	None:intergenic	30.0%
AAGAAAATGTTGGAGATGAT+AGG	+	Chr5:14012518-14012537	MsG0580025115.01.T01:CDS	30.0%
AATTGGAGATATTGGAATTC+TGG	+	Chr5:14010830-14010849	MsG0580025115.01.T01:intron	30.0%
AGAAAATGTTGGAGATGATA+GGG	+	Chr5:14012519-14012538	MsG0580025115.01.T01:CDS	30.0%
AGCTACTTGCTTTGATTAAT+GGG	+	Chr5:14015126-14015145	MsG0580025115.01.T01:intron	30.0%
AGTACACTATTTGCACAATA+TGG	-	Chr5:14012236-14012255	None:intergenic	30.0%
ATAGCATAATCTCAATGAGA+AGG	-	Chr5:14011939-14011958	None:intergenic	30.0%

Showing 1 to 10 of 313 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	14010434	14015609	14010434	ID=MsG0580025115.01;Name=MsG0580025115.01
Chr5	mRNA	14010434	14015609	14010434	ID=MsG0580025115.01.T01;Parent=MsG0580025115.01;Name=MsG0580025115.01.T01;_AED=0.40;_eAED=0.42;_QI=93\|0.87\|0.77\|1\|0.87\|0.77\|9\|0\|403
Chr5	exon	14010434	14010538	14010434	ID=MsG0580025115.01.T01:exon:5681;Parent=MsG0580025115.01.T01
Chr5	exon	14010628	14010741	14010628	ID=MsG0580025115.01.T01:exon:5682;Parent=MsG0580025115.01.T01
Chr5	exon	14011092	14011197	14011092	ID=MsG0580025115.01.T01:exon:5683;Parent=MsG0580025115.01.T01
Chr5	exon	14012302	14012416	14012302	ID=MsG0580025115.01.T01:exon:5684;Parent=MsG0580025115.01.T01
Chr5	exon	14012502	14012711	14012502	ID=MsG0580025115.01.T01:exon:5685;Parent=MsG0580025115.01.T01
Chr5	exon	14012822	14013119	14012822	ID=MsG0580025115.01.T01:exon:5686;Parent=MsG0580025115.01.T01
Chr5	exon	14014040	14014163	14014040	ID=MsG0580025115.01.T01:exon:5687;Parent=MsG0580025115.01.T01
Chr5	exon	14015294	14015382	14015294	ID=MsG0580025115.01.T01:exon:5688;Parent=MsG0580025115.01.T01
Chr5	exon	14015466	14015609	14015466	ID=MsG0580025115.01.T01:exon:5689;Parent=MsG0580025115.01.T01
Chr5	five_prime_UTR	14010434	14010526	14010434	ID=MsG0580025115.01.T01:five_prime_utr;Parent=MsG0580025115.01.T01
Chr5	CDS	14010527	14010538	14010527	ID=MsG0580025115.01.T01:cds;Parent=MsG0580025115.01.T01
Chr5	CDS	14010628	14010741	14010628	ID=MsG0580025115.01.T01:cds;Parent=MsG0580025115.01.T01
Chr5	CDS	14011092	14011197	14011092	ID=MsG0580025115.01.T01:cds;Parent=MsG0580025115.01.T01
Chr5	CDS	14012302	14012416	14012302	ID=MsG0580025115.01.T01:cds;Parent=MsG0580025115.01.T01
Chr5	CDS	14012502	14012711	14012502	ID=MsG0580025115.01.T01:cds;Parent=MsG0580025115.01.T01
Chr5	CDS	14012822	14013119	14012822	ID=MsG0580025115.01.T01:cds;Parent=MsG0580025115.01.T01
Chr5	CDS	14014040	14014163	14014040	ID=MsG0580025115.01.T01:cds;Parent=MsG0580025115.01.T01
Chr5	CDS	14015294	14015382	14015294	ID=MsG0580025115.01.T01:cds;Parent=MsG0580025115.01.T01
Chr5	CDS	14015466	14015609	14015466	ID=MsG0580025115.01.T01:cds;Parent=MsG0580025115.01.T01

Gene Sequence

>MsG0580025115.01.T01

ATGGTGCTCGAGGCGACAATGATCTGTATTGACAATTCTGAATGGATGCGTAACGGAGATTATTCTCCTTCTCGATTTCAAGCTCAAGCTGATGCTGTTAATCTCATTTGCGGTGCCAAGACTCAGTCGAATCCGGAAAATACAGTTGGAGTTCTTATAATGGCCGGAAAGGGTGTTCGTGTTTTGGTCACGCCTACAAGCGATCTAGGCAAGATATTGGCTTGCATGCATGGACTAGAAATAGGCGGTGAGATGAACCTAGCTGCTGGTATTCAGGTGGCACAATTGGCTCTTAAGCATCGTCAAAATAAAAAGCAACATCAAAGGATTATTGTCTTTGCTGGAAGTCATGTGAAGCATGAAAAGAAAATGTTGGAGATGATAGGGAGAAAGTTGAAAAAGAATAGCGTAGCGCTTGATGTAGTTAATTTTGGTGAAGAAGATGAAGCAAAGACTGAGAAGCTGGAAGCACTTGTTGCAGCTGTGAACAATAATGATACGAGCCATATCGTTCATGTTCCAGCTGGTCCAAATGCTCTTTCTGATGTACTTATAAGTACACCAATTTTCACTGGCGATGGGGAAGGTGGAAGCGGTTTTGCCGCTGCTGCAGCTGCAGCTGCAGCTGGGGGTGGAACTGGATATGATTTTGGTGTGGATCCAAACTTGGATCCTGAATTGGCTCTTGCCTTAAGAGTTTCAATGGAAGAGGAAAGAGCTAGGCAGGAAGCTGCAGCAAAAAAGGCCGCAGAGGATGCTGCCAAACAAGAGAAAGGAGGCTCACAAGATGCGACAATGACTGAGGGTGCCAGTGCATCAACTTCTGAAGCAAACAATAAGACAACTGATTTGATGGATGATGAGAATGCCCTACTGCAGCAAGCGCTTGCAATGTCAATGGATGACCCTGCAGTTGGCCATGATTTAAGAGATACAGATATGTCAGAAGCATCTGCAGATGACCCTGAGCTGGCACTAGTAGCGGATAGTACAGGGGATCAGGCAAGCCAGTCAGACGTGACTAGATTGTTGGCAGATCAATCCCGTGTATCTGATATTCTTGCGTCGCTTCCCGGGGTTGACATAAATGACCCTTCTATCAAAGATTTGCTGGCATCCATTCCAAATCAATCTGAGGTTAGTCTTTCCATGGAAAAACATACTACATTGAATTTGAAACTAATTTTGCAGAAAATTTCAGCAGAAGAATAA

Protein sequence

>MsG0580025115.01.T01

MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLIMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQHQRIIVFAGSHVKHEKKMLEMIGRKLKKNSVALDVVNFGEEDEAKTEKLEALVAAVNNNDTSHIVHVPAGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGGTGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEKGGSQDATMTEGASASTSEANNKTTDLMDDENALLQQALAMSMDDPAVGHDLRDTDMSEASADDPELALVADSTGDQASQSDVTRLLADQSRVSDILASLPGVDINDPSIKDLLASIPNQSEVSLSMEKHTTLNLKLILQKISAEE*