AlfalfaGEDB | MsG0780037123.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037123.01

KEGG: -
GO: GO:0003677 GO:0005634
PFAM: PF03110

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037123.01.T01	PNX74892.1	60.116	173	54	4	1	161	1	170	4.03E-56	184

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037123.01.T01	A0A2K3L8N2	60.116	173	54	4	1	161	1	170	1.93e-56	184

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TFs/TRs:

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Gene ID	Type	Classification
MsG0780037123.01.T01	TF	SBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048461.01	MsG0780037123.01	0.833392	5.475888e-56	6.297562e-53
MsG0080048462.01	MsG0780037123.01	0.826762	2.270198e-54	2.148760e-51
MsG0080048856.01	MsG0780037123.01	0.829108	6.191258e-55	6.275234e-52
MsG0180000091.01	MsG0780037123.01	0.821171	4.652159e-53	3.756921e-50
MsG0180000295.01	MsG0780037123.01	0.802894	4.517969e-49	2.238983e-46
MsG0180000334.01	MsG0780037123.01	0.840424	8.769957e-58	1.248659e-54
MsG0180000335.01	MsG0780037123.01	0.809349	1.977074e-50	1.158111e-47
MsG0180000470.01	MsG0780037123.01	0.815475	9.072337e-52	6.261756e-49
MsG0180000555.01	MsG0780037123.01	0.823961	1.044932e-53	9.131459e-51
MsG0180000702.01	MsG0780037123.01	0.821284	4.382826e-53	3.550251e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037123.01.T01	MTR_7g028740	64.000	175	49	4	1	161	1	175	2.79e-59	188
MsG0780037123.01.T01	MTR_3g099080	32.161	199	90	7	1	159	1	194	1.83e-18	81.3
MsG0780037123.01.T01	MTR_8g096780	64.444	45	15	1	115	159	151	194	1.61e-12	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 30 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCTGTTGTGTTGGT+TGG	0.434108	7:+20196585	MsG0780037123.01.T01:CDS
AAAAGAGCGCGTTTGCAAAA+TGG	0.355601	7:+20196466	MsG0780037123.01.T01:CDS
AACCAACACAACAGGAGTTT+TGG	0.287936	7:-20196583	None:intergenic
AAGGAGATTCAATGGATTTG+AGG	0.446707	7:+20196344	MsG0780037123.01.T01:CDS
AAGTTCATGTACAATTACAA+AGG	0.619439	7:+20197155	MsG0780037123.01.T01:CDS
ACTCCTGTTGTGTTGGTTGG+AGG	0.530507	7:+20196588	MsG0780037123.01.T01:CDS
AGAGTATCATAAGCGTCATA+GGG	0.590533	7:+20196545	MsG0780037123.01.T01:CDS
AGTTGCAGGAAACGTCTTGA+TGG	0.488371	7:+20197077	MsG0780037123.01.T01:CDS
ATCAGTTCATGATTCAGGAA+AGG	0.585059	7:+20196399	MsG0780037123.01.T01:CDS
ATGAAAAGAGACTGTGGCTG+AGG	0.533136	7:-20197122	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAATGAAGGAGATTCAA+TGG	+	Chr7:20196336-20196355	MsG0780037123.01.T01:CDS	30.0%
GAATTGTAGTTGTTTGTTTC+GGG	+	Chr7:20196650-20196669	MsG0780037123.01.T01:intron	30.0%
ACCTCAAAACATGATGTGTT+TGG	-	Chr7:20196986-20197005	None:intergenic	35.0%
ATCAGTTCATGATTCAGGAA+AGG	+	Chr7:20196399-20196418	MsG0780037123.01.T01:CDS	35.0%
GAGAAATCAGTTCATGATTC+AGG	+	Chr7:20196394-20196413	MsG0780037123.01.T01:CDS	35.0%
GGATTGGAAAGAGTTTACTT+GGG	+	Chr7:20196291-20196310	MsG0780037123.01.T01:CDS	35.0%
TTGGAGGAGTTGAAAAATGA+AGG	+	Chr7:20196325-20196344	MsG0780037123.01.T01:CDS	35.0%
ATGGACATAATAAGCGCAGA+AGG	+	Chr7:20197096-20197115	MsG0780037123.01.T01:CDS	40.0%
ATTCACTTGCGAGTTTGATG+AGG	+	Chr7:20197046-20197065	MsG0780037123.01.T01:CDS	40.0%
GAATATGATTGCTCGGTTGA+TGG	+	Chr7:20196495-20196514	MsG0780037123.01.T01:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	20196283	20197211	20196283	ID=MsG0780037123.01;Name=MsG0780037123.01
Chr7	mRNA	20196283	20197211	20196283	ID=MsG0780037123.01.T01;Parent=MsG0780037123.01;Name=MsG0780037123.01.T01;_AED=0.44;_eAED=0.44;_QI=0\|0\|0\|1\|1\|1\|2\|0\|165
Chr7	exon	20196283	20196609	20196283	ID=MsG0780037123.01.T01:exon:4938;Parent=MsG0780037123.01.T01
Chr7	exon	20197041	20197211	20197041	ID=MsG0780037123.01.T01:exon:4939;Parent=MsG0780037123.01.T01
Chr7	CDS	20196283	20196609	20196283	ID=MsG0780037123.01.T01:cds;Parent=MsG0780037123.01.T01
Chr7	CDS	20197041	20197211	20197041	ID=MsG0780037123.01.T01:cds;Parent=MsG0780037123.01.T01

Gene Sequence

>MsG0780037123.01.T01

ATGGATTGGGATTGGAAAGAGTTTACTTGGGATCCATCTGGATTGGAGGAGTTGAAAAATGAAGGAGATTCAATGGATTTGAGGCTTGGTGATCAGGCTTCTGATTCATTGGAGAAATCAGTTCATGATTCAGGAAAGGAAGATTCAAAAGCTGTGTCGTCGTCGTCACCTACTAGATCGTTGAAAAGAGCGCGTTTGCAAAATGGATCGCAGAATATGATTGCTCGGTTGATGGATGTAACTCTGATCTTCGTGATTGTAGAGAGTATCATAAGCGTCATAGGGTGTGCGAAAAGCATTCCAAAACTCCTGTTGTGTTGGTTGGAGGTTTCATTCACTTGCGAGTTTGATGAGGTTAAGAGGAGTTGCAGGAAACGTCTTGATGGACATAATAAGCGCAGAAGGAAACCTCAGCCACAGTCTCTTTTCATGGCTGCTGAGAAGTTCATGTACAATTACAAAGGTTTGTGTCTTTTGCATCTCATGATTCTAAGATAG

Protein sequence

>MsG0780037123.01.T01

MDWDWKEFTWDPSGLEELKNEGDSMDLRLGDQASDSLEKSVHDSGKEDSKAVSSSSPTRSLKRARLQNGSQNMIARLMDVTLIFVIVESIISVIGCAKSIPKLLLCWLEVSFTCEFDEVKRSCRKRLDGHNKRRRKPQPQSLFMAAEKFMYNYKGLCLLHLMILR*