AlfalfaGEDB | MsG0380017007.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017007.01

KEGG: K05579
GO: GO:0016651 GO:0048038 GO:0051287 GO:0055114
PFAM: PF00346

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017007.01.T01	YP_009027080.1	100	379	0	0	1	379	15	393	0	776

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017007.01.T01	B5LMS0	98.681	379	5	0	1	379	15	393	0	772

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017007.01.T01	A0A4P8F3V4	100.000	379	0	0	1	379	15	393	0.0	776

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047967.01	MsG0380017007.01	0.802207	6.258492e-49	3.047640e-46
MsG0080048302.01	MsG0380017007.01	-0.822385	2.437429e-53	2.037179e-50
MsG0080048560.01	MsG0380017007.01	0.810300	1.234667e-50	7.414986e-48
MsG0080048690.01	MsG0380017007.01	0.865897	4.229888e-65	1.398792e-61
MsG0080048691.01	MsG0380017007.01	0.826137	3.200179e-54	2.975545e-51
MsG0080048692.01	MsG0380017007.01	0.925036	3.159106e-90	1.378464e-85
MsG0080048693.01	MsG0380017007.01	0.853191	2.813432e-61	6.028817e-58
MsG0080048694.01	MsG0380017007.01	0.808197	3.486186e-50	1.980796e-47
MsG0080048695.01	MsG0380017007.01	0.807454	5.015631e-50	2.794863e-47
MsG0080048697.01	MsG0380017007.01	0.806977	6.330559e-50	3.483941e-47

Showing 1 to 10 of 132 entries

Previous1 2 3 4 5…14Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017007.01.T01	MTR_4g006100	98.925	372	4	0	1	372	15	386	0.0	763
MsG0380017007.01.T01	MTR_6g042200	98.387	372	6	0	1	372	15	386	0.0	759
MsG0380017007.01.T01	MTR_0002s0150	84.227	317	50	0	56	372	101	417	0.0	572
MsG0380017007.01.T01	MTR_2g451380	73.934	211	4	1	1	211	15	174	7.35e-100	293
MsG0380017007.01.T01	MTR_7g021700	100.000	83	0	0	1	83	15	97	4.07e-50	178
MsG0380017007.01.T01	MTR_1g099540	89.041	73	8	0	114	186	3	75	5.46e-42	142
MsG0380017007.01.T01	MTR_4g117480	94.286	70	4	0	1	70	1	70	2.71e-41	142
MsG0380017007.01.T01	MTR_8g035600	90.909	66	6	0	184	249	33	98	8.30e-37	129
MsG0380017007.01.T01	MTR_6g011030	80.000	40	7	1	140	179	45	83	1.37e-15	71.6

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017007.01.T01	ATCG01110	90.237	379	37	0	1	379	15	393	0.0	718
MsG0380017007.01.T01	ATMG00510	40.000	385	218	3	2	379	16	394	4.18e-94	287

Showing 1 to 2 of 2 entries

Previous1Next

Find 71 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTTGATTGGGAAGTTCAA+TGG	0.448549	3:+90566912	MsG0380017007.01.T01:CDS
ACAGAAGCAATAACCGTAAA+TGG	0.315370	3:+90566413	MsG0380017007.01.T01:CDS
ACGTAGATCCCATTGTATTC+CGG	0.396087	3:-90566861	None:intergenic
AGAACTTTATGTGAGAGTTG+AGG	0.641734	3:+90567153	MsG0380017007.01.T01:CDS
AGAGAAGAAGTTATAAATTG+GGG	0.491460	3:+90566812	MsG0380017007.01.T01:CDS
AGATGGAAAATTCGTCCACC+TGG	0.529045	3:+90567232	MsG0380017007.01.T01:CDS
AGCAATAACCGTAAATGGAC+CGG	0.546967	3:+90566418	MsG0380017007.01.T01:CDS
AGCTTCTCATCTACTATGGC+TGG	0.422896	3:+90566514	MsG0380017007.01.T01:CDS
AGGTAGCATAGATATCATTA+TGG	0.351209	3:+90567324	MsG0380017007.01.T01:CDS
AGTGTTACGAGGAATTTGAT+TGG	0.450881	3:+90566900	MsG0380017007.01.T01:CDS

Showing 1 to 10 of 71 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATTTGATTGGGAAGTTCAA+TGG	+	Chr3:90566912-90566931	MsG0380017007.01.T01:CDS	30.0%
AGGTAGCATAGATATCATTA+TGG	+	Chr3:90567324-90567343	MsG0380017007.01.T01:CDS	30.0%
ATATTGGGTTATTTACACAG+AGG	+	Chr3:90566308-90566327	MsG0380017007.01.T01:CDS	30.0%
CATAATTACTCGTATATAGC+TGG	-	Chr3:90566477-90566496	None:intergenic	30.0%
CATTTATCTATCCAACCATA+AGG	-	Chr3:90566686-90566705	None:intergenic	30.0%
CTGTGTAAATAACCCAATAT+TGG	-	Chr3:90566308-90566327	None:intergenic	30.0%
GAGAAGAAGTTATAAATTGG+GGG	+	Chr3:90566813-90566832	MsG0380017007.01.T01:CDS	30.0%
GCTGATATTATGACAATACT+AGG	+	Chr3:90567304-90567323	MsG0380017007.01.T01:CDS	30.0%
GGAGAGAAGAAGTTATAAAT+TGG	+	Chr3:90566810-90566829	MsG0380017007.01.T01:CDS	30.0%
GGTAGCATAGATATCATTAT+GGG	+	Chr3:90567325-90567344	MsG0380017007.01.T01:CDS	30.0%

Showing 1 to 10 of 107 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	90566224	90567363	90566224	ID=MsG0380017007.01;Name=MsG0380017007.01
Chr3	mRNA	90566224	90567363	90566224	ID=MsG0380017007.01.T01;Parent=MsG0380017007.01;Name=MsG0380017007.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|379
Chr3	exon	90566224	90567363	90566224	ID=MsG0380017007.01.T01:exon:3396;Parent=MsG0380017007.01.T01
Chr3	CDS	90566224	90567363	90566224	ID=MsG0380017007.01.T01:cds;Parent=MsG0380017007.01.T01

Gene Sequence

>MsG0380017007.01.T01

ATGGGGCCTCAACACCCATCAATGCATGGTGTTCTTCGACTTATTGTTACTCTGGATGGTGAAGATGTTATTGATTGTGAACCAATATTGGGTTATTTACACAGAGGTATGGAAAAAATTGCGGAAAATCGAACAATTATACAATATCTGCCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTCACAGAAGCAATAACCGTAAATGGACCGGAACAATTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATACGAGTAATTATGTTGGAATTAAGTCGCATAGCTTCTCATCTACTATGGCTGGGACCTTTTATGGCAGATATTGGTGCACAAACCCCCTTTTTCTATATTTTTAGAGAAAGAGAATTAATATATGATCTATTTGAAGCTGCGACAGGTATGAGAATGATGCATAATTATTTTCGTATTGGAGGAGTAGCGGCTGATCTACCTTATGGTTGGATAGATAAATGTTTTGATTTTTGCAATTATTTTTTAACAAGGGTTATTGAATATCAAAAACTGATTACGCGAAATCCAATTTTTTTAGAACGAGTTGAAGGCGTAGGTGTTGTTGGGAGAGAAGAAGTTATAAATTGGGGGTTATCAGGACCGATGCTTCGGGCTTCCGGAATACAATGGGATCTACGTAAAGTCGATAATTATGAGTGTTACGAGGAATTTGATTGGGAAGTTCAATGGCAAAAAGAAGGAGATTCATTAGCTCGTTATTTAGTTCGAATTGGTGAAATGATGGAATCCATTAAAATTATTCAACAGGCTTTGGAAGGAATTCCAGGTGGGCCATATGAAAATTTAGAAATTCGCTCCTTTGATAGAGAAAAGGAGCCAGAATGGAATGATTTTGAATATCGATTCATTGGTAAAAAATCGTCTCCGACTTTTGAATTGCCCAAACAAGAACTTTATGTGAGAGTTGAGGCCCCCAAGGGGGAATTAGGAATTTTTCTAATAGGAGATCAGAATGGTTTTCCTTGGAGATGGAAAATTCGTCCACCTGGTTTTATCAATTTGCAAATTCTTCCTCAATTAGTTAAAAGAATGAAATTGGCTGATATTATGACAATACTAGGTAGCATAGATATCATTATGGGAGAAGTTGATCGTTGA

Protein sequence

>MsG0380017007.01.T01

MGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCFDFCNYFLTRVIEYQKLITRNPIFLERVEGVGVVGREEVINWGLSGPMLRASGIQWDLRKVDNYECYEEFDWEVQWQKEGDSLARYLVRIGEMMESIKIIQQALEGIPGGPYENLEIRSFDREKEPEWNDFEYRFIGKKSSPTFELPKQELYVRVEAPKGELGIFLIGDQNGFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR*