Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017007.01.T01 | YP_009027080.1 | 100 | 379 | 0 | 0 | 1 | 379 | 15 | 393 | 0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017007.01.T01 | B5LMS0 | 98.681 | 379 | 5 | 0 | 1 | 379 | 15 | 393 | 0 | 772 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017007.01.T01 | A0A4P8F3V4 | 100.000 | 379 | 0 | 0 | 1 | 379 | 15 | 393 | 0.0 | 776 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047967.01 | MsG0380017007.01 | 0.802207 | 6.258492e-49 | 3.047640e-46 |
| MsG0080048302.01 | MsG0380017007.01 | -0.822385 | 2.437429e-53 | 2.037179e-50 |
| MsG0080048560.01 | MsG0380017007.01 | 0.810300 | 1.234667e-50 | 7.414986e-48 |
| MsG0080048690.01 | MsG0380017007.01 | 0.865897 | 4.229888e-65 | 1.398792e-61 |
| MsG0080048691.01 | MsG0380017007.01 | 0.826137 | 3.200179e-54 | 2.975545e-51 |
| MsG0080048692.01 | MsG0380017007.01 | 0.925036 | 3.159106e-90 | 1.378464e-85 |
| MsG0080048693.01 | MsG0380017007.01 | 0.853191 | 2.813432e-61 | 6.028817e-58 |
| MsG0080048694.01 | MsG0380017007.01 | 0.808197 | 3.486186e-50 | 1.980796e-47 |
| MsG0080048695.01 | MsG0380017007.01 | 0.807454 | 5.015631e-50 | 2.794863e-47 |
| MsG0080048697.01 | MsG0380017007.01 | 0.806977 | 6.330559e-50 | 3.483941e-47 |
| MsG0080048698.01 | MsG0380017007.01 | 0.935870 | 4.290291e-97 | 3.540063e-92 |
| MsG0080048699.01 | MsG0380017007.01 | 0.956528 | 2.383475e-114 | 7.775202e-109 |
| MsG0080048813.01 | MsG0380017007.01 | 0.813316 | 2.722904e-51 | 1.772257e-48 |
| MsG0080049076.01 | MsG0380017007.01 | 0.858374 | 8.605961e-63 | 2.191602e-59 |
| MsG0180001072.01 | MsG0380017007.01 | 0.807212 | 5.642955e-50 | 3.124663e-47 |
| MsG0180001925.01 | MsG0380017007.01 | 0.818841 | 1.588025e-52 | 1.202047e-49 |
| MsG0180002214.01 | MsG0380017007.01 | 0.804034 | 2.622370e-49 | 1.338161e-46 |
| MsG0180002226.01 | MsG0380017007.01 | 0.830647 | 2.609919e-55 | 2.766746e-52 |
| MsG0180002439.01 | MsG0380017007.01 | 0.823682 | 1.214276e-53 | 1.052892e-50 |
| MsG0180002546.01 | MsG0380017007.01 | 0.811336 | 7.367669e-51 | 4.548090e-48 |
| MsG0180004301.01 | MsG0380017007.01 | 0.803159 | 3.981546e-49 | 1.986545e-46 |
| MsG0180004434.01 | MsG0380017007.01 | 0.807768 | 4.301887e-50 | 2.416677e-47 |
| MsG0180004435.01 | MsG0380017007.01 | 0.848039 | 7.900516e-60 | 1.431164e-56 |
| MsG0180004761.01 | MsG0380017007.01 | 0.806466 | 8.116524e-50 | 4.408619e-47 |
| MsG0180005791.01 | MsG0380017007.01 | 0.816096 | 6.595494e-52 | 4.630191e-49 |
| MsG0280010695.01 | MsG0380017007.01 | 0.838403 | 2.936346e-57 | 3.928717e-54 |
| MsG0380013448.01 | MsG0380017007.01 | 0.885738 | 6.278311e-72 | 4.360168e-68 |
| MsG0380013888.01 | MsG0380017007.01 | 0.871213 | 8.108897e-67 | 3.244473e-63 |
| MsG0380013890.01 | MsG0380017007.01 | 0.812886 | 3.382472e-51 | 2.176162e-48 |
| MsG0380013892.01 | MsG0380017007.01 | 0.834682 | 2.601944e-56 | 3.110063e-53 |
| MsG0380013914.01 | MsG0380017007.01 | 0.804416 | 2.182608e-49 | 1.124710e-46 |
| MsG0380013916.01 | MsG0380017007.01 | 0.879562 | 1.126488e-69 | 6.134933e-66 |
| MsG0380013917.01 | MsG0380017007.01 | 0.899566 | 1.746293e-77 | 2.171574e-73 |
| MsG0380013918.01 | MsG0380017007.01 | 0.830587 | 2.700783e-55 | 2.857745e-52 |
| MsG0380013920.01 | MsG0380017007.01 | 0.886372 | 3.623529e-72 | 2.580910e-68 |
| MsG0380013921.01 | MsG0380017007.01 | 0.816342 | 5.809782e-52 | 4.106164e-49 |
| MsG0380013923.01 | MsG0380017007.01 | 0.928291 | 3.553985e-92 | 1.856251e-87 |
| MsG0380013926.01 | MsG0380017007.01 | 0.903135 | 4.739448e-79 | 6.921753e-75 |
| MsG0380013928.01 | MsG0380017007.01 | 0.801458 | 8.919614e-49 | 4.261776e-46 |
| MsG0380013929.01 | MsG0380017007.01 | 0.914991 | 9.999379e-85 | 2.555488e-80 |
| MsG0380013931.01 | MsG0380017007.01 | 0.920713 | 9.029036e-88 | 3.107156e-83 |
| MsG0380013932.01 | MsG0380017007.01 | 0.867325 | 1.487097e-65 | 5.171648e-62 |
| MsG0380013935.01 | MsG0380017007.01 | 0.802013 | 6.861618e-49 | 3.324927e-46 |
| MsG0380013940.01 | MsG0380017007.01 | 0.883177 | 5.594988e-71 | 3.509215e-67 |
| MsG0380013941.01 | MsG0380017007.01 | 0.922555 | 8.438851e-89 | 3.213085e-84 |
| MsG0380013942.01 | MsG0380017007.01 | 0.964394 | 2.850871e-123 | 1.680920e-117 |
| MsG0380013943.01 | MsG0380017007.01 | 0.887172 | 1.801184e-72 | 1.325095e-68 |
| MsG0380013944.01 | MsG0380017007.01 | 0.945432 | 3.088709e-104 | 4.726062e-99 |
| MsG0380013945.01 | MsG0380017007.01 | 0.884871 | 1.324384e-71 | 8.886406e-68 |
| MsG0380013946.01 | MsG0380017007.01 | 0.800730 | 1.256582e-48 | 5.894455e-46 |
| MsG0380013948.01 | MsG0380017007.01 | 0.866131 | 3.568329e-65 | 1.189812e-61 |
| MsG0380013950.01 | MsG0380017007.01 | 0.822378 | 2.446283e-53 | 2.044180e-50 |
| MsG0380013951.01 | MsG0380017007.01 | 0.980818 | 4.169405e-151 | 1.015941e-144 |
| MsG0380013952.01 | MsG0380017007.01 | 0.921845 | 2.118379e-88 | 7.747644e-84 |
| MsG0380013953.01 | MsG0380017007.01 | 0.881660 | 1.995275e-70 | 1.179013e-66 |
| MsG0380013954.01 | MsG0380017007.01 | 0.813820 | 2.108968e-51 | 1.391591e-48 |
| MsG0380013956.01 | MsG0380017007.01 | 0.836364 | 9.773380e-57 | 1.228978e-53 |
| MsG0380013957.01 | MsG0380017007.01 | 0.882476 | 1.008924e-70 | 6.154612e-67 |
| MsG0380013959.01 | MsG0380017007.01 | 0.828447 | 8.945946e-55 | 8.894522e-52 |
| MsG0380013961.01 | MsG0380017007.01 | 0.848544 | 5.727692e-60 | 1.054742e-56 |
| MsG0380013962.01 | MsG0380017007.01 | 0.866670 | 2.405343e-65 | 8.174663e-62 |
| MsG0380013966.01 | MsG0380017007.01 | 0.934642 | 2.944287e-96 | 2.256349e-91 |
| MsG0380013967.01 | MsG0380017007.01 | 0.882954 | 6.753739e-71 | 4.198484e-67 |
| MsG0380013968.01 | MsG0380017007.01 | 0.980164 | 1.368518e-149 | 3.164477e-143 |
| MsG0380013969.01 | MsG0380017007.01 | 0.921412 | 3.697281e-88 | 1.321372e-83 |
| MsG0380013971.01 | MsG0380017007.01 | 0.864254 | 1.387417e-64 | 4.328113e-61 |
| MsG0380013972.01 | MsG0380017007.01 | 0.935035 | 1.595398e-96 | 1.255609e-91 |
| MsG0380013975.01 | MsG0380017007.01 | 0.834442 | 2.990532e-56 | 3.549392e-53 |
| MsG0380013977.01 | MsG0380017007.01 | 0.882770 | 7.884305e-71 | 4.865488e-67 |
| MsG0380013978.01 | MsG0380017007.01 | 0.802871 | 4.567480e-49 | 2.262199e-46 |
| MsG0380013981.01 | MsG0380017007.01 | 0.901896 | 1.684478e-78 | 2.324950e-74 |
| MsG0380013983.01 | MsG0380017007.01 | 0.816375 | 5.712595e-52 | 4.040908e-49 |
| MsG0380013986.01 | MsG0380017007.01 | 0.808769 | 2.631717e-50 | 1.517740e-47 |
| MsG0380013995.01 | MsG0380017007.01 | 0.907046 | 7.734247e-81 | 1.347295e-76 |
| MsG0380013997.01 | MsG0380017007.01 | 0.813239 | 2.830761e-51 | 1.838459e-48 |
| MsG0380013999.01 | MsG0380017007.01 | 0.822856 | 1.893351e-53 | 1.603736e-50 |
| MsG0380014004.01 | MsG0380017007.01 | 0.839090 | 1.950804e-57 | 2.665395e-54 |
| MsG0380014005.01 | MsG0380017007.01 | 0.888901 | 3.912230e-73 | 3.088297e-69 |
| MsG0380014006.01 | MsG0380017007.01 | 0.883382 | 4.705092e-71 | 2.975794e-67 |
| MsG0380014008.01 | MsG0380017007.01 | 0.928723 | 1.926811e-92 | 1.034267e-87 |
| MsG0380014011.01 | MsG0380017007.01 | 0.824401 | 8.236851e-54 | 7.287608e-51 |
| MsG0380014017.01 | MsG0380017007.01 | 0.828110 | 1.078385e-54 | 1.061751e-51 |
| MsG0380014018.01 | MsG0380017007.01 | 0.941828 | 2.103640e-101 | 2.531620e-96 |
| MsG0380014020.01 | MsG0380017007.01 | 0.853751 | 1.943127e-61 | 4.242186e-58 |
| MsG0380014021.01 | MsG0380017007.01 | 0.829664 | 4.535915e-55 | 4.673356e-52 |
| MsG0380014023.01 | MsG0380017007.01 | 0.916951 | 9.592002e-86 | 2.701846e-81 |
| MsG0380014026.01 | MsG0380017007.01 | 0.920724 | 8.905228e-88 | 3.066102e-83 |
| MsG0380014030.01 | MsG0380017007.01 | 0.812815 | 3.506932e-51 | 2.251800e-48 |
| MsG0380014032.01 | MsG0380017007.01 | 0.890046 | 1.403678e-73 | 1.161125e-69 |
| MsG0380014033.01 | MsG0380017007.01 | 0.921608 | 2.877088e-88 | 1.039058e-83 |
| MsG0380014034.01 | MsG0380017007.01 | 0.832367 | 9.843136e-56 | 1.097864e-52 |
| MsG0380014036.01 | MsG0380017007.01 | 0.876090 | 1.840808e-68 | 8.808869e-65 |
| MsG0380014039.01 | MsG0380017007.01 | 0.947235 | 9.973115e-106 | 1.723436e-100 |
| MsG0380014040.01 | MsG0380017007.01 | 0.939068 | 2.363469e-99 | 2.374743e-94 |
| MsG0380014044.01 | MsG0380017007.01 | 0.858471 | 8.053325e-63 | 2.057634e-59 |
| MsG0380014051.01 | MsG0380017007.01 | 0.950152 | 2.968538e-108 | 6.195070e-103 |
| MsG0380014057.01 | MsG0380017007.01 | 0.910954 | 1.050140e-82 | 2.200517e-78 |
| MsG0380015348.01 | MsG0380017007.01 | 0.810219 | 1.285310e-50 | 7.702660e-48 |
| MsG0380015697.01 | MsG0380017007.01 | 0.810656 | 1.034316e-50 | 6.271104e-48 |
| MsG0380016424.01 | MsG0380017007.01 | 0.800453 | 1.431168e-48 | 6.666329e-46 |
| MsG0380017006.01 | MsG0380017007.01 | 0.818515 | 1.882546e-52 | 1.412200e-49 |
| MsG0380017007.01 | MsG0480018296.01 | 0.920975 | 6.466708e-88 | 2.254716e-83 |
| MsG0380017007.01 | MsG0480020052.01 | 0.857838 | 1.242815e-62 | 3.108778e-59 |
| MsG0380017007.01 | MsG0480021331.01 | 0.816701 | 4.828048e-52 | 3.445701e-49 |
| MsG0380017007.01 | MsG0480021476.01 | 0.808905 | 2.461212e-50 | 1.424535e-47 |
| MsG0380017007.01 | MsG0480022125.01 | -0.821429 | 4.057175e-53 | 3.299952e-50 |
| MsG0380017007.01 | MsG0480023810.01 | -0.825585 | 4.325457e-54 | 3.959114e-51 |
| MsG0380017007.01 | MsG0580024570.01 | 0.844982 | 5.393571e-59 | 8.858770e-56 |
| MsG0380017007.01 | MsG0580027677.01 | 0.876223 | 1.656201e-68 | 7.965012e-65 |
| MsG0380017007.01 | MsG0580029583.01 | -0.837944 | 3.854183e-57 | 5.085160e-54 |
| MsG0380017007.01 | MsG0780035951.01 | 0.831754 | 1.395129e-55 | 1.528402e-52 |
| MsG0380017007.01 | MsG0780038197.01 | 0.871367 | 7.213659e-67 | 2.902539e-63 |
| MsG0380017007.01 | MsG0780039190.01 | -0.809412 | 1.916780e-50 | 1.124669e-47 |
| MsG0380017007.01 | MsG0780040060.01 | -0.822533 | 2.251044e-53 | 1.889349e-50 |
| MsG0380017007.01 | MsG0780040316.01 | 0.844698 | 6.436339e-59 | 1.047594e-55 |
| MsG0380017007.01 | MsG0780040317.01 | 0.814541 | 1.462017e-51 | 9.837365e-49 |
| MsG0380017007.01 | MsG0780040480.01 | -0.814778 | 1.295242e-51 | 8.770942e-49 |
| MsG0380017007.01 | MsG0880042291.01 | 0.814105 | 1.824605e-51 | 1.213260e-48 |
| MsG0380017007.01 | MsG0880043824.01 | -0.802492 | 5.469038e-49 | 2.682586e-46 |
| MsG0380017007.01 | MsG0880044440.01 | 0.814814 | 1.271824e-51 | 8.620804e-49 |
| MsG0380017007.01 | MsG0880045097.01 | 0.805443 | 1.331552e-49 | 7.045550e-47 |
| MsG0380017007.01 | MsG0880045630.01 | 0.871455 | 6.747252e-67 | 2.723691e-63 |
| MsG0380017007.01 | MsG0880045861.01 | -0.810266 | 1.255690e-50 | 7.534786e-48 |
| MsG0380017007.01 | MsG0880047081.01 | -0.800139 | 1.658017e-48 | 7.661895e-46 |
| MsG0280006475.01 | MsG0380017007.01 | 0.829362 | 5.369658e-55 | 5.484115e-52 |
| MsG0280006704.01 | MsG0380017007.01 | -0.802155 | 6.416002e-49 | 3.120294e-46 |
| MsG0280007759.01 | MsG0380017007.01 | -0.812334 | 4.466351e-51 | 2.832055e-48 |
| MsG0280007760.01 | MsG0380017007.01 | -0.809983 | 1.444750e-50 | 8.605897e-48 |
| MsG0280009971.01 | MsG0380017007.01 | -0.880772 | 4.167830e-70 | 2.380393e-66 |
| MsG0280010137.01 | MsG0380017007.01 | 0.824810 | 6.596892e-54 | 5.906651e-51 |
| MsG0280010140.01 | MsG0380017007.01 | 0.821888 | 3.177976e-53 | 2.618584e-50 |
| MsG0280010145.01 | MsG0380017007.01 | 0.958446 | 2.307658e-116 | 8.596216e-111 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017007.01.T01 | MTR_4g006100 | 98.925 | 372 | 4 | 0 | 1 | 372 | 15 | 386 | 0.0 | 763 |
| MsG0380017007.01.T01 | MTR_6g042200 | 98.387 | 372 | 6 | 0 | 1 | 372 | 15 | 386 | 0.0 | 759 |
| MsG0380017007.01.T01 | MTR_0002s0150 | 84.227 | 317 | 50 | 0 | 56 | 372 | 101 | 417 | 0.0 | 572 |
| MsG0380017007.01.T01 | MTR_2g451380 | 73.934 | 211 | 4 | 1 | 1 | 211 | 15 | 174 | 7.35e-100 | 293 |
| MsG0380017007.01.T01 | MTR_7g021700 | 100.000 | 83 | 0 | 0 | 1 | 83 | 15 | 97 | 4.07e-50 | 178 |
| MsG0380017007.01.T01 | MTR_1g099540 | 89.041 | 73 | 8 | 0 | 114 | 186 | 3 | 75 | 5.46e-42 | 142 |
| MsG0380017007.01.T01 | MTR_4g117480 | 94.286 | 70 | 4 | 0 | 1 | 70 | 1 | 70 | 2.71e-41 | 142 |
| MsG0380017007.01.T01 | MTR_8g035600 | 90.909 | 66 | 6 | 0 | 184 | 249 | 33 | 98 | 8.30e-37 | 129 |
| MsG0380017007.01.T01 | MTR_6g011030 | 80.000 | 40 | 7 | 1 | 140 | 179 | 45 | 83 | 1.37e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017007.01.T01 | ATCG01110 | 90.237 | 379 | 37 | 0 | 1 | 379 | 15 | 393 | 0.0 | 718 |
| MsG0380017007.01.T01 | ATMG00510 | 40.000 | 385 | 218 | 3 | 2 | 379 | 16 | 394 | 4.18e-94 | 287 |
Find 71 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGTTAAAAGAATGAAAT+TGG | 0.240964 | 3:+90567282 | MsG0380017007.01.T01:CDS |
| GGAGAGAAGAAGTTATAAAT+TGG | 0.256563 | 3:+90566810 | MsG0380017007.01.T01:CDS |
| TATTGATTGTGAACCAATAT+TGG | 0.291835 | 3:+90566292 | MsG0380017007.01.T01:CDS |
| TAAAATTATTCAACAGGCTT+TGG | 0.308807 | 3:+90566997 | MsG0380017007.01.T01:CDS |
| ACAGAAGCAATAACCGTAAA+TGG | 0.315370 | 3:+90566413 | MsG0380017007.01.T01:CDS |
| CAATTGTTCCGGTCCATTTA+CGG | 0.318728 | 3:-90566426 | None:intergenic |
| CGTAAATGGACCGGAACAAT+TGG | 0.319748 | 3:+90566427 | MsG0380017007.01.T01:CDS |
| TCTCACATAAAGTTCTTGTT+TGG | 0.322955 | 3:-90567146 | None:intergenic |
| GGTTATCAGGACCGATGCTT+CGG | 0.326389 | 3:+90566834 | MsG0380017007.01.T01:CDS |
| ATCCATTAAAATTATTCAAC+AGG | 0.326815 | 3:+90566991 | MsG0380017007.01.T01:CDS |
| TATTCAAAATCATTCCATTC+TGG | 0.326932 | 3:-90567082 | None:intergenic |
| GGACCGATGCTTCGGGCTTC+CGG | 0.333395 | 3:+90566842 | MsG0380017007.01.T01:CDS |
| CTGTGTAAATAACCCAATAT+TGG | 0.346800 | 3:-90566305 | None:intergenic |
| GAGAGAAGAAGTTATAAATT+GGG | 0.349483 | 3:+90566811 | MsG0380017007.01.T01:CDS |
| AGGTAGCATAGATATCATTA+TGG | 0.351209 | 3:+90567324 | MsG0380017007.01.T01:CDS |
| CAGGCTTTGGAAGGAATTCC+AGG | 0.354309 | 3:+90567010 | MsG0380017007.01.T01:CDS |
| TGAATATTTCCCAATTGTTC+CGG | 0.368041 | 3:-90566437 | None:intergenic |
| GCACCAATATCTGCCATAAA+AGG | 0.383520 | 3:-90566539 | None:intergenic |
| ATTGATTGTGAACCAATATT+GGG | 0.384432 | 3:+90566293 | MsG0380017007.01.T01:CDS |
| GTTATCAGGACCGATGCTTC+GGG | 0.385864 | 3:+90566835 | MsG0380017007.01.T01:CDS |
| GCTCGTTATTTAGTTCGAAT+TGG | 0.386457 | 3:+90566956 | MsG0380017007.01.T01:CDS |
| ACGTAGATCCCATTGTATTC+CGG | 0.396087 | 3:-90566861 | None:intergenic |
| CTCACATAAAGTTCTTGTTT+GGG | 0.400339 | 3:-90567145 | None:intergenic |
| CGAAGAACACCATGCATTGA+TGG | 0.409727 | 3:-90566239 | None:intergenic |
| AGCTTCTCATCTACTATGGC+TGG | 0.422896 | 3:+90566514 | MsG0380017007.01.T01:CDS |
| GTTGAAGGCGTAGGTGTTGT+TGG | 0.429176 | 3:+90566788 | MsG0380017007.01.T01:CDS |
| CGACTTATTGTTACTCTGGA+TGG | 0.439520 | 3:+90566260 | MsG0380017007.01.T01:CDS |
| GCATAGCTTCTCATCTACTA+TGG | 0.439604 | 3:+90566510 | MsG0380017007.01.T01:CDS |
| GTAGCGGCTGATCTACCTTA+TGG | 0.440758 | 3:+90566668 | MsG0380017007.01.T01:CDS |
| AGTTCGAATTGGTGAAATGA+TGG | 0.442828 | 3:+90566967 | MsG0380017007.01.T01:CDS |
| AATTTGATTGGGAAGTTCAA+TGG | 0.448549 | 3:+90566912 | MsG0380017007.01.T01:CDS |
| AGTGTTACGAGGAATTTGAT+TGG | 0.450881 | 3:+90566900 | MsG0380017007.01.T01:CDS |
| GGTAGCATAGATATCATTAT+GGG | 0.462662 | 3:+90567325 | MsG0380017007.01.T01:CDS |
| TCTTCGACTTATTGTTACTC+TGG | 0.475804 | 3:+90566256 | MsG0380017007.01.T01:CDS |
| TTGAAGGCGTAGGTGTTGTT+GGG | 0.476016 | 3:+90566789 | MsG0380017007.01.T01:CDS |
| CATAATTACTCGTATATAGC+TGG | 0.480165 | 3:-90566474 | None:intergenic |
| TCGCTCCTTTGATAGAGAAA+AGG | 0.480513 | 3:+90567057 | MsG0380017007.01.T01:CDS |
| TAATCCCAACGTGTTACATA+AGG | 0.485650 | 3:-90566374 | None:intergenic |
| GTGTTACGAGGAATTTGATT+GGG | 0.487456 | 3:+90566901 | MsG0380017007.01.T01:CDS |
| AGAGAAGAAGTTATAAATTG+GGG | 0.491460 | 3:+90566812 | MsG0380017007.01.T01:CDS |
| GGGTTATTTACACAGAGGTA+TGG | 0.494293 | 3:+90566313 | MsG0380017007.01.T01:CDS |
| TCTGCCTTATGTAACACGTT+GGG | 0.505724 | 3:+90566370 | MsG0380017007.01.T01:CDS |
| TCGGGCTTCCGGAATACAAT+GGG | 0.512104 | 3:+90566853 | MsG0380017007.01.T01:CDS |
| GCTGATATTATGACAATACT+AGG | 0.522631 | 3:+90567304 | MsG0380017007.01.T01:CDS |
| GTAAATGGACCGGAACAATT+GGG | 0.525773 | 3:+90566428 | MsG0380017007.01.T01:CDS |
| ATAGAGAAAAGGAGCCAGAA+TGG | 0.528576 | 3:+90567068 | MsG0380017007.01.T01:CDS |
| AGATGGAAAATTCGTCCACC+TGG | 0.529045 | 3:+90567232 | MsG0380017007.01.T01:CDS |
| CATTTATCTATCCAACCATA+AGG | 0.536061 | 3:-90566683 | None:intergenic |
| GATCTATTTGAAGCTGCGAC+AGG | 0.538812 | 3:+90566608 | MsG0380017007.01.T01:CDS |
| ATTATTCAACAGGCTTTGGA+AGG | 0.539344 | 3:+90567001 | MsG0380017007.01.T01:CDS |
| CGGCTGATCTACCTTATGGT+TGG | 0.543311 | 3:+90566672 | MsG0380017007.01.T01:CDS |
| AGCAATAACCGTAAATGGAC+CGG | 0.546967 | 3:+90566418 | MsG0380017007.01.T01:CDS |
| TGTTTGGGCAATTCAAAAGT+CGG | 0.557531 | 3:-90567130 | None:intergenic |
| TTTCTAATAGGAGATCAGAA+TGG | 0.560048 | 3:+90567199 | MsG0380017007.01.T01:CDS |
| TTAGAACGAGTTGAAGGCGT+AGG | 0.570320 | 3:+90566779 | MsG0380017007.01.T01:CDS |
| ATTTGCAAATTGATAAAACC+AGG | 0.570420 | 3:-90567250 | None:intergenic |
| GAAGAACACCATGCATTGAT+GGG | 0.574286 | 3:-90566238 | None:intergenic |
| ATCTGCCTTATGTAACACGT+TGG | 0.575287 | 3:+90566369 | MsG0380017007.01.T01:CDS |
| ATTCCGGAAGCCCGAAGCAT+CGG | 0.578734 | 3:-90566845 | None:intergenic |
| CTATATACGAGTAATTATGT+TGG | 0.584312 | 3:+90566478 | MsG0380017007.01.T01:CDS |
| GCTTCTCATCTACTATGGCT+GGG | 0.589546 | 3:+90566515 | MsG0380017007.01.T01:CDS |
| TTCGGGCTTCCGGAATACAA+TGG | 0.596428 | 3:+90566852 | MsG0380017007.01.T01:CDS |
| CCATGCATTGATGGGTGTTG+AGG | 0.621910 | 3:-90566230 | None:intergenic |
| CCTCAACACCCATCAATGCA+TGG | 0.624983 | 3:+90566230 | MsG0380017007.01.T01:CDS |
| AGAACTTTATGTGAGAGTTG+AGG | 0.641734 | 3:+90567153 | MsG0380017007.01.T01:CDS |
| GAGAAGAAGTTATAAATTGG+GGG | 0.651461 | 3:+90566813 | MsG0380017007.01.T01:CDS |
| CTTTGGAAGGAATTCCAGGT+GGG | 0.666113 | 3:+90567014 | MsG0380017007.01.T01:CDS |
| TGCAAATTGATAAAACCAGG+TGG | 0.677686 | 3:-90567247 | None:intergenic |
| CGATAATTATGAGTGTTACG+AGG | 0.689833 | 3:+90566889 | MsG0380017007.01.T01:CDS |
| GCTTTGGAAGGAATTCCAGG+TGG | 0.694925 | 3:+90567013 | MsG0380017007.01.T01:CDS |
| ATATTGGGTTATTTACACAG+AGG | 0.748960 | 3:+90566308 | MsG0380017007.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGTTAAAAGAATGAAAT+TGG | + | Chr3:90567282-90567301 | MsG0380017007.01.T01:CDS | 15.0% |
| !!! | TCTCTAAAAATATAGAAAAA+GGG | - | Chr3:90566572-90566591 | None:intergenic | 15.0% |
| !!! | TTCTCTAAAAATATAGAAAA+AGG | - | Chr3:90566573-90566592 | None:intergenic | 15.0% |
| !!! | TTGCAATTATTTTTTAACAA+GGG | + | Chr3:90566715-90566734 | MsG0380017007.01.T01:CDS | 15.0% |
| !!! | TTTGCAATTATTTTTTAACA+AGG | + | Chr3:90566714-90566733 | MsG0380017007.01.T01:CDS | 15.0% |
| !! | ATCCATTAAAATTATTCAAC+AGG | + | Chr3:90566991-90567010 | MsG0380017007.01.T01:CDS | 20.0% |
| !! | TCTAAAAATATAGAAAAAGG+GGG | - | Chr3:90566570-90566589 | None:intergenic | 20.0% |
| !!! | ATGCATAATTATTTTCGTAT+TGG | + | Chr3:90566641-90566660 | MsG0380017007.01.T01:CDS | 20.0% |
| !!! | CGAATTTCTAAATTTTCATA+TGG | - | Chr3:90567040-90567059 | None:intergenic | 20.0% |
| !!! | CTCTAAAAATATAGAAAAAG+GGG | - | Chr3:90566571-90566590 | None:intergenic | 20.0% |
| !!! | GAATTAGGAATTTTTCTAAT+AGG | + | Chr3:90567187-90567206 | MsG0380017007.01.T01:CDS | 20.0% |
| !!! | TTCATTCTTTTAACTAATTG+AGG | - | Chr3:90567280-90567299 | None:intergenic | 20.0% |
| ! | AGAGAAGAAGTTATAAATTG+GGG | + | Chr3:90566812-90566831 | MsG0380017007.01.T01:CDS | 25.0% |
| ! | ATTGATTGTGAACCAATATT+GGG | + | Chr3:90566293-90566312 | MsG0380017007.01.T01:CDS | 25.0% |
| ! | ATTTGCAAATTGATAAAACC+AGG | - | Chr3:90567253-90567272 | None:intergenic | 25.0% |
| ! | CTATATACGAGTAATTATGT+TGG | + | Chr3:90566478-90566497 | MsG0380017007.01.T01:CDS | 25.0% |
| ! | GAGAGAAGAAGTTATAAATT+GGG | + | Chr3:90566811-90566830 | MsG0380017007.01.T01:CDS | 25.0% |
| ! | TAAAATTATTCAACAGGCTT+TGG | + | Chr3:90566997-90567016 | MsG0380017007.01.T01:CDS | 25.0% |
| ! | TATTCAAAATCATTCCATTC+TGG | - | Chr3:90567085-90567104 | None:intergenic | 25.0% |
| !! | AGCCTGTTGAATAATTTTAA+TGG | - | Chr3:90566996-90567015 | None:intergenic | 25.0% |
| !! | CATAATTATTTTCGTATTGG+AGG | + | Chr3:90566644-90566663 | MsG0380017007.01.T01:CDS | 25.0% |
| !! | TATTGATTGTGAACCAATAT+TGG | + | Chr3:90566292-90566311 | MsG0380017007.01.T01:CDS | 25.0% |
| !!! | ATTTTTTTAGAACGAGTTGA+AGG | + | Chr3:90566773-90566792 | MsG0380017007.01.T01:CDS | 25.0% |
| !!! | GATTTTGAATATCGATTCAT+TGG | + | Chr3:90567094-90567113 | MsG0380017007.01.T01:CDS | 25.0% |
| !!! | TCAACTCGTTCTAAAAAAAT+TGG | - | Chr3:90566773-90566792 | None:intergenic | 25.0% |
| AATTTGATTGGGAAGTTCAA+TGG | + | Chr3:90566912-90566931 | MsG0380017007.01.T01:CDS | 30.0% | |
| AGGTAGCATAGATATCATTA+TGG | + | Chr3:90567324-90567343 | MsG0380017007.01.T01:CDS | 30.0% | |
| ATATTGGGTTATTTACACAG+AGG | + | Chr3:90566308-90566327 | MsG0380017007.01.T01:CDS | 30.0% | |
| CATAATTACTCGTATATAGC+TGG | - | Chr3:90566477-90566496 | None:intergenic | 30.0% | |
| CATTTATCTATCCAACCATA+AGG | - | Chr3:90566686-90566705 | None:intergenic | 30.0% | |
| CTGTGTAAATAACCCAATAT+TGG | - | Chr3:90566308-90566327 | None:intergenic | 30.0% | |
| GAGAAGAAGTTATAAATTGG+GGG | + | Chr3:90566813-90566832 | MsG0380017007.01.T01:CDS | 30.0% | |
| GCTGATATTATGACAATACT+AGG | + | Chr3:90567304-90567323 | MsG0380017007.01.T01:CDS | 30.0% | |
| GGAGAGAAGAAGTTATAAAT+TGG | + | Chr3:90566810-90566829 | MsG0380017007.01.T01:CDS | 30.0% | |
| GGTAGCATAGATATCATTAT+GGG | + | Chr3:90567325-90567344 | MsG0380017007.01.T01:CDS | 30.0% | |
| TCTCACATAAAGTTCTTGTT+TGG | - | Chr3:90567149-90567168 | None:intergenic | 30.0% | |
| TGAATATTTCCCAATTGTTC+CGG | - | Chr3:90566440-90566459 | None:intergenic | 30.0% | |
| TTTCTAATAGGAGATCAGAA+TGG | + | Chr3:90567199-90567218 | MsG0380017007.01.T01:CDS | 30.0% | |
| ! | CTCACATAAAGTTCTTGTTT+GGG | - | Chr3:90567148-90567167 | None:intergenic | 30.0% |
| AAAAATTCCTAATTCCCCCT+TGG | - | Chr3:90567182-90567201 | None:intergenic | 35.0% | |
| AAAATTCCTAATTCCCCCTT+GGG | - | Chr3:90567181-90567200 | None:intergenic | 35.0% | |
| ACAGAAGCAATAACCGTAAA+TGG | + | Chr3:90566413-90566432 | MsG0380017007.01.T01:CDS | 35.0% | |
| AGAACTTTATGTGAGAGTTG+AGG | + | Chr3:90567153-90567172 | MsG0380017007.01.T01:CDS | 35.0% | |
| AGTGTTACGAGGAATTTGAT+TGG | + | Chr3:90566900-90566919 | MsG0380017007.01.T01:CDS | 35.0% | |
| AGTTCGAATTGGTGAAATGA+TGG | + | Chr3:90566967-90566986 | MsG0380017007.01.T01:CDS | 35.0% | |
| CGATAATTATGAGTGTTACG+AGG | + | Chr3:90566889-90566908 | MsG0380017007.01.T01:CDS | 35.0% | |
| GAAGTTCAATGGCAAAAAGA+AGG | + | Chr3:90566923-90566942 | MsG0380017007.01.T01:CDS | 35.0% | |
| GTGTTACGAGGAATTTGATT+GGG | + | Chr3:90566901-90566920 | MsG0380017007.01.T01:CDS | 35.0% | |
| GTTATAAATTGGGGGTTATC+AGG | + | Chr3:90566821-90566840 | MsG0380017007.01.T01:CDS | 35.0% | |
| TAATCCCAACGTGTTACATA+AGG | - | Chr3:90566377-90566396 | None:intergenic | 35.0% | |
| TCTTCGACTTATTGTTACTC+TGG | + | Chr3:90566256-90566275 | MsG0380017007.01.T01:CDS | 35.0% | |
| TGCAAATTGATAAAACCAGG+TGG | - | Chr3:90567250-90567269 | None:intergenic | 35.0% | |
| TGTTTGGGCAATTCAAAAGT+CGG | - | Chr3:90567133-90567152 | None:intergenic | 35.0% | |
| ! | CAGAGGTATGGAAAAAATTG+CGG | + | Chr3:90566325-90566344 | MsG0380017007.01.T01:CDS | 35.0% |
| ! | GCTCGTTATTTAGTTCGAAT+TGG | + | Chr3:90566956-90566975 | MsG0380017007.01.T01:CDS | 35.0% |
| !! | ATTATTCAACAGGCTTTGGA+AGG | + | Chr3:90567001-90567020 | MsG0380017007.01.T01:CDS | 35.0% |
| AAATTCCTAATTCCCCCTTG+GGG | - | Chr3:90567180-90567199 | None:intergenic | 40.0% | |
| ACGTAGATCCCATTGTATTC+CGG | - | Chr3:90566864-90566883 | None:intergenic | 40.0% | |
| AGCAATAACCGTAAATGGAC+CGG | + | Chr3:90566418-90566437 | MsG0380017007.01.T01:CDS | 40.0% | |
| ATAGAGAAAAGGAGCCAGAA+TGG | + | Chr3:90567068-90567087 | MsG0380017007.01.T01:CDS | 40.0% | |
| ATCTGCCTTATGTAACACGT+TGG | + | Chr3:90566369-90566388 | MsG0380017007.01.T01:CDS | 40.0% | |
| CAATTGTTCCGGTCCATTTA+CGG | - | Chr3:90566429-90566448 | None:intergenic | 40.0% | |
| CGACTTATTGTTACTCTGGA+TGG | + | Chr3:90566260-90566279 | MsG0380017007.01.T01:CDS | 40.0% | |
| GCACCAATATCTGCCATAAA+AGG | - | Chr3:90566542-90566561 | None:intergenic | 40.0% | |
| GCATAGCTTCTCATCTACTA+TGG | + | Chr3:90566510-90566529 | MsG0380017007.01.T01:CDS | 40.0% | |
| GGGTTATTTACACAGAGGTA+TGG | + | Chr3:90566313-90566332 | MsG0380017007.01.T01:CDS | 40.0% | |
| GTAAATGGACCGGAACAATT+GGG | + | Chr3:90566428-90566447 | MsG0380017007.01.T01:CDS | 40.0% | |
| TCGCTCCTTTGATAGAGAAA+AGG | + | Chr3:90567057-90567076 | MsG0380017007.01.T01:CDS | 40.0% | |
| TCTGCCTTATGTAACACGTT+GGG | + | Chr3:90566370-90566389 | MsG0380017007.01.T01:CDS | 40.0% | |
| ! | AAATTTTCATATGGCCCACC+TGG | - | Chr3:90567031-90567050 | None:intergenic | 40.0% |
| ! | AGAATGGTTTTCCTTGGAGA+TGG | + | Chr3:90567215-90567234 | MsG0380017007.01.T01:CDS | 40.0% |
| ! | GAAGAACACCATGCATTGAT+GGG | - | Chr3:90566241-90566260 | None:intergenic | 40.0% |
| ! | GAGATCAGAATGGTTTTCCT+TGG | + | Chr3:90567209-90567228 | MsG0380017007.01.T01:CDS | 40.0% |
| ! | GGACCTTTTATGGCAGATAT+TGG | + | Chr3:90566536-90566555 | MsG0380017007.01.T01:CDS | 40.0% |
| ! | TGGCTCCTTTTCTCTATCAA+AGG | - | Chr3:90567065-90567084 | None:intergenic | 40.0% |
| ! | TTTTCGTATTGGAGGAGTAG+CGG | + | Chr3:90566652-90566671 | MsG0380017007.01.T01:CDS | 40.0% |
| !! | CGTATATAGCTGGCTCTTTT+AGG | - | Chr3:90566467-90566486 | None:intergenic | 40.0% |
| AATTCCTAATTCCCCCTTGG+GGG | - | Chr3:90567179-90567198 | None:intergenic | 45.0% | |
| AGATGGAAAATTCGTCCACC+TGG | + | Chr3:90567232-90567251 | MsG0380017007.01.T01:CDS | 45.0% | |
| AGCTTCTCATCTACTATGGC+TGG | + | Chr3:90566514-90566533 | MsG0380017007.01.T01:CDS | 45.0% | |
| CGAAGAACACCATGCATTGA+TGG | - | Chr3:90566242-90566261 | None:intergenic | 45.0% | |
| CGTAAATGGACCGGAACAAT+TGG | + | Chr3:90566427-90566446 | MsG0380017007.01.T01:CDS | 45.0% | |
| GCTTCTCATCTACTATGGCT+GGG | + | Chr3:90566515-90566534 | MsG0380017007.01.T01:CDS | 45.0% | |
| ! | ACTATGGCTGGGACCTTTTA+TGG | + | Chr3:90566526-90566545 | MsG0380017007.01.T01:CDS | 45.0% |
| ! | CTTTGGAAGGAATTCCAGGT+GGG | + | Chr3:90567014-90567033 | MsG0380017007.01.T01:CDS | 45.0% |
| ! | GATCTATTTGAAGCTGCGAC+AGG | + | Chr3:90566608-90566627 | MsG0380017007.01.T01:CDS | 45.0% |
| ! | GGACGAATTTTCCATCTCCA+AGG | - | Chr3:90567229-90567248 | None:intergenic | 45.0% |
| ! | TTAGAACGAGTTGAAGGCGT+AGG | + | Chr3:90566779-90566798 | MsG0380017007.01.T01:CDS | 45.0% |
| !! | TTGAAGGCGTAGGTGTTGTT+GGG | + | Chr3:90566789-90566808 | MsG0380017007.01.T01:CDS | 45.0% |
| CCTCAACACCCATCAATGCA+TGG | + | Chr3:90566230-90566249 | MsG0380017007.01.T01:CDS | 50.0% | |
| CGGCTGATCTACCTTATGGT+TGG | + | Chr3:90566672-90566691 | MsG0380017007.01.T01:CDS | 50.0% | |
| GGTTATCAGGACCGATGCTT+CGG | + | Chr3:90566834-90566853 | MsG0380017007.01.T01:CDS | 50.0% | |
| GTAGCGGCTGATCTACCTTA+TGG | + | Chr3:90566668-90566687 | MsG0380017007.01.T01:CDS | 50.0% | |
| GTTATCAGGACCGATGCTTC+GGG | + | Chr3:90566835-90566854 | MsG0380017007.01.T01:CDS | 50.0% | |
| TCGGGCTTCCGGAATACAAT+GGG | + | Chr3:90566853-90566872 | MsG0380017007.01.T01:CDS | 50.0% | |
| TTCGGGCTTCCGGAATACAA+TGG | + | Chr3:90566852-90566871 | MsG0380017007.01.T01:CDS | 50.0% | |
| ! | CCATGCATTGATGGGTGTTG+AGG | - | Chr3:90566233-90566252 | None:intergenic | 50.0% |
| ! | GTTGAAGGCGTAGGTGTTGT+TGG | + | Chr3:90566788-90566807 | MsG0380017007.01.T01:CDS | 50.0% |
| !! | CAGGCTTTGGAAGGAATTCC+AGG | + | Chr3:90567010-90567029 | MsG0380017007.01.T01:CDS | 50.0% |
| !! | GCTTTGGAAGGAATTCCAGG+TGG | + | Chr3:90567013-90567032 | MsG0380017007.01.T01:CDS | 50.0% |
| ATTCCGGAAGCCCGAAGCAT+CGG | - | Chr3:90566848-90566867 | None:intergenic | 55.0% | |
| GTGAGAGTTGAGGCCCCCAA+GGG | + | Chr3:90567163-90567182 | MsG0380017007.01.T01:CDS | 60.0% | |
| TGAGAGTTGAGGCCCCCAAG+GGG | + | Chr3:90567164-90567183 | MsG0380017007.01.T01:CDS | 60.0% | |
| TGTGAGAGTTGAGGCCCCCA+AGG | + | Chr3:90567162-90567181 | MsG0380017007.01.T01:CDS | 60.0% | |
| GAGAGTTGAGGCCCCCAAGG+GGG | + | Chr3:90567165-90567184 | MsG0380017007.01.T01:CDS | 65.0% | |
| GAGGCCCCCAAGGGGGAATT+AGG | + | Chr3:90567172-90567191 | MsG0380017007.01.T01:CDS | 65.0% | |
| GGACCGATGCTTCGGGCTTC+CGG | + | Chr3:90566842-90566861 | MsG0380017007.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 90566224 | 90567363 | 90566224 | ID=MsG0380017007.01;Name=MsG0380017007.01 |
| Chr3 | mRNA | 90566224 | 90567363 | 90566224 | ID=MsG0380017007.01.T01;Parent=MsG0380017007.01;Name=MsG0380017007.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|379 |
| Chr3 | exon | 90566224 | 90567363 | 90566224 | ID=MsG0380017007.01.T01:exon:3396;Parent=MsG0380017007.01.T01 |
| Chr3 | CDS | 90566224 | 90567363 | 90566224 | ID=MsG0380017007.01.T01:cds;Parent=MsG0380017007.01.T01 |
| Gene Sequence |
| Protein sequence |
