AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044440.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044440.01.T01 MTR_4g050860 88.839 224 3 1 188 389 43 266 1.03e-138 396
MsG0880044440.01.T01 MTR_4g034770 89.756 205 3 1 1 187 266 470 4.60e-129 379
MsG0880044440.01.T01 MTR_0002s0690 66.547 278 17 2 188 389 43 320 3.40e-120 351
MsG0880044440.01.T01 MTR_5g058870 73.864 88 23 0 189 276 27 114 7.96e-36 127
MsG0880044440.01.T01 MTR_0002s0680 33.516 182 60 2 22 187 4 140 7.60e-19 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044440.01.T01 ATCG00540 67.509 277 14 2 189 389 44 320 5.12e-121 353
MsG0880044440.01.T01 ATCG00520 44.199 181 85 2 22 187 4 183 6.07e-39 138

Find 84 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGTAATGTCTGCTTTAT+TGG 0.078253 8:-42159437 None:intergenic
CTTCTTGGCATCTATTATTT+TGG 0.108321 8:-42156776 MsG0880044440.01.T01:CDS
GATCCCCAACTAATGAATTT+TGG 0.140397 8:+42159406 None:intergenic
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 8:-42156791 MsG0880044440.01.T01:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 8:+42156868 None:intergenic
GAAAACCAATCAATTTCTTC+TGG 0.228682 8:-42159327 MsG0880044440.01.T01:CDS
ATTTCAGTTTCCAGTTATTA+TGG 0.286137 8:-42159265 MsG0880044440.01.T01:CDS
CCACTACTGGGTTCTGGGTT+AGG 0.286744 8:+42158974 None:intergenic
TAATAACCACTACTGGGTTC+TGG 0.297849 8:+42158968 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 8:+42157471 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 8:-42157104 MsG0880044440.01.T01:CDS
AATCCTAATGTGGGTGGATT+TGG 0.318985 8:-42156856 MsG0880044440.01.T01:CDS
TGTTCCAAAATTCATTAGTT+GGG 0.331270 8:-42159410 MsG0880044440.01.T01:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 8:-42157103 MsG0880044440.01.T01:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 8:+42157105 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 8:-42157374 MsG0880044440.01.T01:CDS
CATTGGTACACTCAAGAATC+TGG 0.353115 8:+42158898 None:intergenic
ACTGCTTCAAATACAGTATC+AGG 0.354479 8:+42157422 None:intergenic
AAAATGTCTACCATAATAAC+TGG 0.356945 8:+42159255 None:intergenic
AAAACCAATCAATTTCTTCT+GGG 0.367555 8:-42159326 MsG0880044440.01.T01:CDS
ATCATAATAATAACCACTAC+TGG 0.372259 8:+42158961 None:intergenic
CACTACTGGGTTCTGGGTTA+GGG 0.385578 8:+42158975 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 8:-42156851 MsG0880044440.01.T01:CDS
ATGTTCCAAAATTCATTAGT+TGG 0.400957 8:-42159411 MsG0880044440.01.T01:CDS
GGGGTCACCCTGACTTTCTA+TGG 0.402384 8:-42159187 MsG0880044440.01.T01:CDS
GTAGTGGTTATTATTATGAT+AGG 0.405751 8:-42158958 MsG0880044440.01.T01:CDS
AATAACCACTACTGGGTTCT+GGG 0.410751 8:+42158969 None:intergenic
TGACCAAATCCACCCACATT+AGG 0.412065 8:+42156853 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 8:+42157389 None:intergenic
CTGCGATTCCATAGAAAGTC+AGG 0.416112 8:+42159179 None:intergenic
TCTTTCTAAGTTTACATTGG+TGG 0.421364 8:-42159153 MsG0880044440.01.T01:CDS
GAAGCCCAGAAGAAATTGAT+TGG 0.427159 8:+42159322 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 8:-42157036 MsG0880044440.01.T01:intron
AAAATACGACGATATGTTCC+AGG 0.442940 8:+42159046 None:intergenic
TCAAAAGAAACAATTTGAAA+AGG 0.451952 8:-42156734 MsG0880044440.01.T01:CDS
TTATTACTCTTGCTCCCGTC+GGG 0.465288 8:+42157063 None:intergenic
GTCTCTTTCTAAGTTTACAT+TGG 0.492527 8:-42159156 MsG0880044440.01.T01:CDS
CGCATGGCTTGACATTGTAC+CGG 0.493482 8:-42159356 MsG0880044440.01.T01:CDS
CAAGATCCGTTACGTGTACA+AGG 0.506414 8:-42156808 MsG0880044440.01.T01:CDS
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 8:+42157509 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 8:-42157110 MsG0880044440.01.T01:CDS
GTTCCAAAATTCATTAGTTG+GGG 0.521057 8:-42159409 MsG0880044440.01.T01:CDS
TAATAAGCCTGTAGATATTG+AGG 0.521759 8:-42157462 MsG0880044440.01.T01:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 8:-42156849 MsG0880044440.01.T01:CDS
TGTGGAACCTCAATATCTAC+AGG 0.524236 8:+42157455 None:intergenic
GAATATGGAACGATTTCCAT+TGG 0.524909 8:+42158881 None:intergenic
ATTATTACTCTTGCTCCCGT+CGG 0.527873 8:+42157062 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 8:-42156850 MsG0880044440.01.T01:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 8:+42157287 None:intergenic
GCATGGCTTGACATTGTACC+GGG 0.544314 8:-42159355 MsG0880044440.01.T01:CDS
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 8:-42157096 MsG0880044440.01.T01:CDS
GTGAACATCTCTCTTAGTAG+CGG 0.549431 8:+42157140 None:intergenic
AAAATCCGAGAGAAGCTACC+GGG 0.554646 8:-42157514 MsG0880044440.01.T01:CDS
CAGATTCTTGAGTGTACCAA+TGG 0.554777 8:-42158897 MsG0880044440.01.T01:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 8:+42157141 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 8:-42156866 MsG0880044440.01.T01:CDS
CTGACTTTCTATGGAATCGC+AGG 0.573800 8:-42159178 MsG0880044440.01.T01:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 8:+42157311 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 8:-42157077 MsG0880044440.01.T01:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 8:-42157098 MsG0880044440.01.T01:CDS
GAATATCTTCCATACGAACT+CGG 0.594234 8:+42159020 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 8:+42156802 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 8:-42157515 MsG0880044440.01.T01:CDS
GTTGTCGTTCACAAGACGCA+TGG 0.606924 8:-42159372 MsG0880044440.01.T01:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 8:-42156848 MsG0880044440.01.T01:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 8:-42157111 MsG0880044440.01.T01:CDS
TCATAATAATAACCACTACT+GGG 0.623235 8:+42158962 None:intergenic
TTAAAATATCCTATATACGT+AGG 0.623794 8:-42157114 MsG0880044440.01.T01:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 8:-42156862 MsG0880044440.01.T01:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 8:+42157290 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 8:+42157496 None:intergenic
AAAGTCAGGGTGACCCCTTG+TGG 0.633741 8:+42159193 None:intergenic
ATATACGTAGGCGGGAATAG+GGG 0.641009 8:-42157102 MsG0880044440.01.T01:CDS
CCTAACCCAGAACCCAGTAG+TGG 0.650648 8:-42158974 MsG0880044440.01.T01:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 8:-42157097 MsG0880044440.01.T01:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 8:-42156865 MsG0880044440.01.T01:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 8:-42157450 MsG0880044440.01.T01:CDS
CGGGCGAAATACGATCAGGA+GGG 0.656521 8:+42157291 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 8:+42157292 None:intergenic
TGCGATTCCATAGAAAGTCA+GGG 0.664160 8:+42159180 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 8:-42157078 MsG0880044440.01.T01:CDS
GTATCAGGAAGTACCGCTTG+TGG 0.687149 8:+42157437 None:intergenic
CATGGCTTGACATTGTACCG+GGG 0.736327 8:-42159354 MsG0880044440.01.T01:CDS
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 8:-42157511 MsG0880044440.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATATTCAAGAAAATTT+CGG + Chr8:42157725-42157744 None:intergenic 10.0%
!! AAAATTAGAAATTGATACAT+AGG - Chr8:42157454-42157473 MsG0880044440.01.T01:CDS 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - Chr8:42159135-42159154 MsG0880044440.01.T01:CDS 15.0%
!! AAAATTTCTTCAATAAGATT+AGG + Chr8:42158452-42158471 None:intergenic 15.0%
!! TACATAAATCAGTTAATAAA+AGG + Chr8:42158055-42158074 None:intergenic 15.0%
!! TCGAATTACAAATAAAAAAA+GGG - Chr8:42157405-42157424 MsG0880044440.01.T01:CDS 15.0%
!! TTCGAATTACAAATAAAAAA+AGG - Chr8:42157404-42157423 MsG0880044440.01.T01:CDS 15.0%
!! TTTCGATAAAAAAAATAGAA+TGG - Chr8:42157046-42157065 MsG0880044440.01.T01:CDS 15.0%
!!! AAAAAAAATATTCTTGTTGT+AGG - Chr8:42158919-42158938 MsG0880044440.01.T01:CDS 15.0%
!!! AACAAGAATATTTTTTTTGT+GGG + Chr8:42158917-42158936 None:intergenic 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - Chr8:42158192-42158211 MsG0880044440.01.T01:intron 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - Chr8:42158056-42158075 MsG0880044440.01.T01:intron 15.0%
!! GAAATACACGATTTAAATAA+CGG + Chr8:42158223-42158242 None:intergenic 20.0%
!! TCAAAAGAAACAATTTGAAA+AGG - Chr8:42159404-42159423 MsG0880044440.01.T01:CDS 20.0%
!! TTAAAATATCCTATATACGT+AGG - Chr8:42159024-42159043 MsG0880044440.01.T01:CDS 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + Chr8:42158185-42158204 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + Chr8:42158384-42158403 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + Chr8:42158293-42158312 None:intergenic 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + Chr8:42158870-42158889 None:intergenic 20.0%
!!! ATCTTATTGAAGAAATTTTC+AGG - Chr8:42158453-42158472 MsG0880044440.01.T01:intron 20.0%
!!! CAACAAGAATATTTTTTTTG+TGG + Chr8:42158918-42158937 None:intergenic 20.0%
!!! GTTTGTTTTTTGCTTTAATT+TGG + Chr8:42157383-42157402 None:intergenic 20.0%
!!! TTTTACATTTAAGAAAAGTC+TGG - Chr8:42157663-42157682 MsG0880044440.01.T01:intron 20.0%
! AAAACCAATCAATTTCTTCT+GGG - Chr8:42156812-42156831 MsG0880044440.01.T01:CDS 25.0%
! AAAATGTCTACCATAATAAC+TGG + Chr8:42156886-42156905 None:intergenic 25.0%
! AATATGTTCCTTATTCTAAG+TGG - Chr8:42157933-42157952 MsG0880044440.01.T01:intron 25.0%
! ACATTTACAAAATCTTCGTA+TGG - Chr8:42157828-42157847 MsG0880044440.01.T01:intron 25.0%
! AGTTCATTAAAGACGAAAAA+TGG - Chr8:42157573-42157592 MsG0880044440.01.T01:intron 25.0%
! ATCATAATAATAACCACTAC+TGG + Chr8:42157180-42157199 None:intergenic 25.0%
! ATGTTCCAAAATTCATTAGT+TGG - Chr8:42156727-42156746 MsG0880044440.01.T01:CDS 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - Chr8:42159138-42159157 MsG0880044440.01.T01:CDS 25.0%
! ATTTCAGTTTCCAGTTATTA+TGG - Chr8:42156873-42156892 MsG0880044440.01.T01:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - Chr8:42158143-42158162 MsG0880044440.01.T01:intron 25.0%
! GTAGTGGTTATTATTATGAT+AGG - Chr8:42157180-42157199 MsG0880044440.01.T01:intron 25.0%
! TAGAATAACCACTTAGAATA+AGG + Chr8:42157944-42157963 None:intergenic 25.0%
! TATACATATCATGAGCAATA+CGG + Chr8:42158549-42158568 None:intergenic 25.0%
! TATAGATGTAAGACATAGAA+GGG + Chr8:42157620-42157639 None:intergenic 25.0%
! TCATAATAATAACCACTACT+GGG + Chr8:42157179-42157198 None:intergenic 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - Chr8:42157947-42157966 MsG0880044440.01.T01:intron 25.0%
! TGTTCCAAAATTCATTAGTT+GGG - Chr8:42156728-42156747 MsG0880044440.01.T01:CDS 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - Chr8:42157946-42157965 MsG0880044440.01.T01:intron 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - Chr8:42158774-42158793 MsG0880044440.01.T01:intron 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - Chr8:42158402-42158421 MsG0880044440.01.T01:intron 25.0%
! TTTCTTCAATAAGATTAGGT+AGG + Chr8:42158448-42158467 None:intergenic 25.0%
!! AGATTTTGTAAATGTGTTTC+TGG + Chr8:42157823-42157842 None:intergenic 25.0%
!! GATTTTGTAAATGTGTTTCT+GGG + Chr8:42157822-42157841 None:intergenic 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - Chr8:42158495-42158514 MsG0880044440.01.T01:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - Chr8:42158408-42158427 MsG0880044440.01.T01:intron 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - Chr8:42158502-42158521 MsG0880044440.01.T01:intron 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - Chr8:42158465-42158484 MsG0880044440.01.T01:intron 25.0%
!!! AGAAGAAATTGATTGGTTTT+CGG + Chr8:42156812-42156831 None:intergenic 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + Chr8:42158869-42158888 None:intergenic 25.0%
!!! CTTCTAATTTTTTGGAATGT+GGG - Chr8:42157008-42157027 MsG0880044440.01.T01:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - Chr8:42158407-42158426 MsG0880044440.01.T01:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - Chr8:42159377-42159396 MsG0880044440.01.T01:CDS 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + Chr8:42158752-42158771 None:intergenic 25.0%
!!! TTCTAATTTTTTGGAATGTG+GGG - Chr8:42157009-42157028 MsG0880044440.01.T01:intron 25.0%
AAAGAAATTGATAGAGTTCG+AGG - Chr8:42157762-42157781 MsG0880044440.01.T01:intron 30.0%
AAATATCCTATATACGTAGG+CGG - Chr8:42159027-42159046 MsG0880044440.01.T01:CDS 30.0%
AACTCATTCTTCTTAACTCT+TGG - Chr8:42157979-42157998 MsG0880044440.01.T01:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG + Chr8:42158441-42158460 None:intergenic 30.0%
AATCTTGGATTACTAATTGG+TGG - Chr8:42157686-42157705 MsG0880044440.01.T01:intron 30.0%
AATGCAAAATCGTATGGATA+CGG + Chr8:42157900-42157919 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + Chr8:42158585-42158604 None:intergenic 30.0%
ACATTAGGATTACTCGTTAA+TGG + Chr8:42159273-42159292 None:intergenic 30.0%
ACTCATTCTTCTTAACTCTT+GGG - Chr8:42157980-42157999 MsG0880044440.01.T01:intron 30.0%
ATAGATGTAAGACATAGAAG+GGG + Chr8:42157619-42157638 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - Chr8:42159272-42159291 MsG0880044440.01.T01:CDS 30.0%
ATTTCACTATATTTCTTCCC+AGG + Chr8:42158952-42158971 None:intergenic 30.0%
CAACGTTATACAAAAAGCTT+GGG - Chr8:42157211-42157230 MsG0880044440.01.T01:intron 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - Chr8:42158866-42158885 MsG0880044440.01.T01:intron 30.0%
CTAAGTGGTTATTCTATTAG+GGG - Chr8:42157948-42157967 MsG0880044440.01.T01:intron 30.0%
CTATAGATGTAAGACATAGA+AGG + Chr8:42157621-42157640 None:intergenic 30.0%
GAAAACCAATCAATTTCTTC+TGG - Chr8:42156811-42156830 MsG0880044440.01.T01:CDS 30.0%
GTCTCTTTCTAAGTTTACAT+TGG - Chr8:42156982-42157001 MsG0880044440.01.T01:intron 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - Chr8:42158764-42158783 MsG0880044440.01.T01:intron 30.0%
GTTCCAAAATTCATTAGTTG+GGG - Chr8:42156729-42156748 MsG0880044440.01.T01:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - Chr8:42158773-42158792 MsG0880044440.01.T01:intron 30.0%
TAATAAGCCTGTAGATATTG+AGG - Chr8:42158676-42158695 MsG0880044440.01.T01:intron 30.0%
TACAGAAATGCAAAATCGTA+TGG + Chr8:42157906-42157925 None:intergenic 30.0%
TAGAAATTGATACATAGGCT+AGG - Chr8:42157459-42157478 MsG0880044440.01.T01:CDS 30.0%
TCGTATTCTTCCTATATTCT+AGG - Chr8:42158371-42158390 MsG0880044440.01.T01:intron 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - Chr8:42158775-42158794 MsG0880044440.01.T01:intron 30.0%
TCTTTCTAAGTTTACATTGG+TGG - Chr8:42156985-42157004 MsG0880044440.01.T01:intron 30.0%
TGATAAATCACTACAAGTGA+CGG + Chr8:42158245-42158264 None:intergenic 30.0%
TGGAATCTTGGATTACTAAT+TGG - Chr8:42157683-42157702 MsG0880044440.01.T01:intron 30.0%
TGGATACTAAATAACGATAG+TGG - Chr8:42159158-42159177 MsG0880044440.01.T01:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - Chr8:42159273-42159292 MsG0880044440.01.T01:CDS 30.0%
TTTGATACAACGATTTCCAT+TGG + Chr8:42157292-42157311 None:intergenic 30.0%
! ACCAAAATTTCTTGTTTCAG+AGG - Chr8:42159224-42159243 MsG0880044440.01.T01:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + Chr8:42158177-42158196 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + Chr8:42158584-42158603 None:intergenic 30.0%
! CCAAAATTTCTTGTTTCAGA+GGG - Chr8:42159225-42159244 MsG0880044440.01.T01:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - Chr8:42159362-42159381 MsG0880044440.01.T01:CDS 30.0%
! GGGTCTGTCTATAAAAATTT+TGG - Chr8:42158113-42158132 MsG0880044440.01.T01:intron 30.0%
! TTAAGAAAAGTCTGGAATCT+TGG - Chr8:42157671-42157690 MsG0880044440.01.T01:intron 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + Chr8:42158492-42158511 None:intergenic 30.0%
!!! ATGGTGTGTTTTTTTCGTTA+CGG - Chr8:42157065-42157084 MsG0880044440.01.T01:CDS 30.0%
!!! ATTGGTGGCTTCTAATTTTT+TGG - Chr8:42157000-42157019 MsG0880044440.01.T01:intron 30.0%
!!! GAAGAAATTGATTGGTTTTC+GGG + Chr8:42156811-42156830 None:intergenic 30.0%
!!! GCTTCTAATTTTTTGGAATG+TGG - Chr8:42157007-42157026 MsG0880044440.01.T01:intron 30.0%
!!! GTTGTTCTTATTTTACCAGA+GGG - Chr8:42158812-42158831 MsG0880044440.01.T01:intron 30.0%
!!! TCACTCTTTTAGGTTCATTA+GGG - Chr8:42156841-42156860 MsG0880044440.01.T01:CDS 30.0%
!!! TGTTGTTCTTATTTTACCAG+AGG - Chr8:42158811-42158830 MsG0880044440.01.T01:intron 30.0%
!!! TTCACTCTTTTAGGTTCATT+AGG - Chr8:42156840-42156859 MsG0880044440.01.T01:CDS 30.0%
AAAATACGACGATATGTTCC+AGG + Chr8:42157095-42157114 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - Chr8:42159028-42159047 MsG0880044440.01.T01:CDS 35.0%
AATGTAAAAGAGATGCACCA+AGG + Chr8:42157652-42157671 None:intergenic 35.0%
ACTATATTTCTTCCCAGGAA+CGG + Chr8:42158947-42158966 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+AGG + Chr8:42158719-42158738 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + Chr8:42158603-42158622 None:intergenic 35.0%
ATAGGATTCCATTCAACTCA+TGG - Chr8:42158074-42158093 MsG0880044440.01.T01:intron 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + Chr8:42158977-42158996 None:intergenic 35.0%
ATGGTTGGGAACTAATGATT+GGG - Chr8:42158093-42158112 MsG0880044440.01.T01:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG - Chr8:42158079-42158098 MsG0880044440.01.T01:intron 35.0%
CATATTCTTGAGTCTACCAA+TGG - Chr8:42157273-42157292 MsG0880044440.01.T01:CDS 35.0%
CATTGGTAGACTCAAGAATA+TGG + Chr8:42157275-42157294 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + Chr8:42158670-42158689 None:intergenic 35.0%
GAATATCTTCCATACGAACT+CGG + Chr8:42157121-42157140 None:intergenic 35.0%
GAATATGGAACGATTTCCAT+TGG + Chr8:42157260-42157279 None:intergenic 35.0%
GCAACGTTATACAAAAAGCT+TGG - Chr8:42157210-42157229 MsG0880044440.01.T01:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - Chr8:42159102-42159121 MsG0880044440.01.T01:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + Chr8:42158602-42158621 None:intergenic 35.0%
TATCATGAGCAATACGGAAA+TGG + Chr8:42158543-42158562 None:intergenic 35.0%
! CATCTATAGTCTTTTTGCCT+TGG - Chr8:42157632-42157651 MsG0880044440.01.T01:intron 35.0%
! GATCCCCAACTAATGAATTT+TGG + Chr8:42156735-42156754 None:intergenic 35.0%
! TATTTTTCTCCGAGTTCGTA+TGG - Chr8:42157109-42157128 MsG0880044440.01.T01:CDS 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - Chr8:42158788-42158807 MsG0880044440.01.T01:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - Chr8:42159167-42159186 MsG0880044440.01.T01:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - Chr8:42158595-42158614 MsG0880044440.01.T01:intron 35.0%
!! GAAACAAGAAATTTTGGTCC+TGG + Chr8:42159222-42159241 None:intergenic 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - Chr8:42158596-42158615 MsG0880044440.01.T01:intron 35.0%
!!! CACTCTTTTAGGTTCATTAG+GGG - Chr8:42156842-42156861 MsG0880044440.01.T01:CDS 35.0%
!!! CCCTCTGAAACAAGAAATTT+TGG + Chr8:42159228-42159247 None:intergenic 35.0%
!!! TAGTTCCTTTTTTGCCACAA+GGG - Chr8:42156931-42156950 MsG0880044440.01.T01:intron 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - Chr8:42158823-42158842 MsG0880044440.01.T01:intron 35.0%
!!! TTTTTTCGTTACGGATTTCC+TGG - Chr8:42157074-42157093 MsG0880044440.01.T01:CDS 35.0%
AAATCGTATGGATACGGTCT+TGG + Chr8:42157894-42157913 None:intergenic 40.0%
AACAGACCTTGTACACGTAA+CGG + Chr8:42159339-42159358 None:intergenic 40.0%
AATAACCACTACTGGGTTCT+GGG + Chr8:42157172-42157191 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - Chr8:42159347-42159366 MsG0880044440.01.T01:CDS 40.0%
AGATATTGAGGTTCCACAAG+CGG - Chr8:42158688-42158707 MsG0880044440.01.T01:intron 40.0%
AGTTGGGGATCAGAAAAACA+TGG - Chr8:42156744-42156763 MsG0880044440.01.T01:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG + Chr8:42159079-42159098 None:intergenic 40.0%
CAGATTCTTGAGTGTACCAA+TGG - Chr8:42157241-42157260 MsG0880044440.01.T01:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG - Chr8:42158092-42158111 MsG0880044440.01.T01:intron 40.0%
CATTGGTACACTCAAGAATC+TGG + Chr8:42157243-42157262 None:intergenic 40.0%
CCTCTTGGATGAAATGCTAA+AGG - Chr8:42157792-42157811 MsG0880044440.01.T01:intron 40.0%
CCTTTAGCATTTCATCCAAG+AGG + Chr8:42157795-42157814 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + Chr8:42158946-42158965 None:intergenic 40.0%
GAAGCCCAGAAGAAATTGAT+TGG + Chr8:42156819-42156838 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - Chr8:42158078-42158097 MsG0880044440.01.T01:intron 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + Chr8:42157873-42157892 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + Chr8:42159001-42159020 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - Chr8:42159201-42159220 MsG0880044440.01.T01:CDS 40.0%
GTTCGTCTCTATCAATTGGA+TGG + Chr8:42157869-42157888 None:intergenic 40.0%
TAATAACCACTACTGGGTTC+TGG + Chr8:42157173-42157192 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - Chr8:42159035-42159054 MsG0880044440.01.T01:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + Chr8:42158945-42158964 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + Chr8:42159000-42159019 None:intergenic 40.0%
TGAGCAATACGGAAATGGAT+CGG + Chr8:42158538-42158557 None:intergenic 40.0%
TGCGATTCCATAGAAAGTCA+GGG + Chr8:42156961-42156980 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + Chr8:42158686-42158705 None:intergenic 40.0%
! AATCCTAATGTGGGTGGATT+TGG - Chr8:42159282-42159301 MsG0880044440.01.T01:CDS 40.0%
! GCTTTTTGTATAACGTTGCG+TGG + Chr8:42157209-42157228 None:intergenic 40.0%
! TGGGCTTCTTTCACTCTTTT+AGG - Chr8:42156831-42156850 MsG0880044440.01.T01:CDS 40.0%
!! ACAAGAAATTTTGGTCCTGG+CGG + Chr8:42159219-42159238 None:intergenic 40.0%
!!! AGTTCCTTTTTTGCCACAAG+GGG - Chr8:42156932-42156951 MsG0880044440.01.T01:intron 40.0%
!!! ATTTTTTGGAATGTGGGGAG+TGG - Chr8:42157014-42157033 MsG0880044440.01.T01:intron 40.0%
!!! GTAGTTCCTTTTTTGCCACA+AGG - Chr8:42156930-42156949 MsG0880044440.01.T01:intron 40.0%
AAAATCCGAGAGAAGCTACC+GGG - Chr8:42158624-42158643 MsG0880044440.01.T01:intron 45.0%
ACGAGTAATCCTAATGTGGG+TGG - Chr8:42159276-42159295 MsG0880044440.01.T01:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG - Chr8:42159036-42159055 MsG0880044440.01.T01:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + Chr8:42158645-42158664 None:intergenic 45.0%
CAAGATCCGTTACGTGTACA+AGG - Chr8:42159330-42159349 MsG0880044440.01.T01:CDS 45.0%
CTATATACGTAGGCGGGAAT+AGG - Chr8:42159034-42159053 MsG0880044440.01.T01:CDS 45.0%
CTATTCCCGCCTACGTATAT+AGG + Chr8:42159036-42159055 None:intergenic 45.0%
CTGACTTTCTATGGAATCGC+AGG - Chr8:42156960-42156979 MsG0880044440.01.T01:intron 45.0%
CTGCGATTCCATAGAAAGTC+AGG + Chr8:42156962-42156981 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - Chr8:42158623-42158642 MsG0880044440.01.T01:intron 45.0%
GAGCAATACGGAAATGGATC+GGG + Chr8:42158537-42158556 None:intergenic 45.0%
TGACCAAATCCACCCACATT+AGG + Chr8:42159288-42159307 None:intergenic 45.0%
TTATTACTCTTGCTCCCGTC+GGG + Chr8:42159078-42159097 None:intergenic 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - Chr8:42159288-42159307 MsG0880044440.01.T01:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + Chr8:42158085-42158104 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - Chr8:42159287-42159306 MsG0880044440.01.T01:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG + Chr8:42158301-42158320 None:intergenic 5.0%
AGGGGTCAGATTTATCCCGA+CGG - Chr8:42159060-42159079 MsG0880044440.01.T01:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG + Chr8:42158854-42158873 None:intergenic 50.0%
CATGGCTTGACATTGTACCG+GGG - Chr8:42156784-42156803 MsG0880044440.01.T01:CDS 50.0%
CGCATGGCTTGACATTGTAC+CGG - Chr8:42156782-42156801 MsG0880044440.01.T01:CDS 50.0%
GCATGGCTTGACATTGTACC+GGG - Chr8:42156783-42156802 MsG0880044440.01.T01:CDS 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + Chr8:42158982-42159001 None:intergenic 50.0%
GTGACCCCTTGTGGCAAAAA+AGG + Chr8:42156939-42156958 None:intergenic 50.0%
GTTCGAGGAACTGTTCCTCT+TGG - Chr8:42157777-42157796 MsG0880044440.01.T01:intron 50.0%
GTTGTCGTTCACAAGACGCA+TGG - Chr8:42156766-42156785 MsG0880044440.01.T01:CDS 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - Chr8:42159289-42159308 MsG0880044440.01.T01:CDS 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + Chr8:42158994-42159013 None:intergenic 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - Chr8:42159171-42159190 MsG0880044440.01.T01:CDS 50.0%
!! CACTACTGGGTTCTGGGTTA+GGG + Chr8:42157166-42157185 None:intergenic 50.0%
!! GTATCAGGAAGTACCGCTTG+TGG + Chr8:42158704-42158723 None:intergenic 50.0%
!!! TTGATTGGTTTTCGGGACCC+CGG + Chr8:42156804-42156823 None:intergenic 50.0%
AAAGTCAGGGTGACCCCTTG+TGG + Chr8:42156948-42156967 None:intergenic 55.0%
CCTAACCCAGAACCCAGTAG+TGG - Chr8:42157164-42157183 MsG0880044440.01.T01:intron 55.0%
CGGGCGAAATACGATCAGGA+GGG + Chr8:42158850-42158869 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + Chr8:42158849-42158868 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + Chr8:42158830-42158849 None:intergenic 55.0%
GGGGTCACCCTGACTTTCTA+TGG - Chr8:42156951-42156970 MsG0880044440.01.T01:intron 55.0%
GGGGTCAGATTTATCCCGAC+GGG - Chr8:42159061-42159080 MsG0880044440.01.T01:CDS 55.0%
TCGGGCGAAATACGATCAGG+AGG + Chr8:42158851-42158870 None:intergenic 55.0%
TTGTTGTAGGCCCCGTTCCT+GGG - Chr8:42158932-42158951 MsG0880044440.01.T01:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - Chr8:42159290-42159309 MsG0880044440.01.T01:CDS 55.0%
!! CCACTACTGGGTTCTGGGTT+AGG + Chr8:42157167-42157186 None:intergenic 55.0%
ACGTAGGCGGGAATAGGGGA+AGG - Chr8:42159040-42159059 MsG0880044440.01.T01:CDS 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - Chr8:42158627-42158646 MsG0880044440.01.T01:intron 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + Chr8:42158632-42158651 None:intergenic 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - Chr8:42159041-42159060 MsG0880044440.01.T01:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - Chr8:42159042-42159061 MsG0880044440.01.T01:CDS 60.0%
! CTTGTTGTAGGCCCCGTTCC+TGG - Chr8:42158931-42158950 MsG0880044440.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 42156708 42159452 42156708 ID=MsG0880044440.01;Name=MsG0880044440.01
Chr8 mRNA 42156708 42159452 42156708 ID=MsG0880044440.01.T01;Parent=MsG0880044440.01;Name=MsG0880044440.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|0.66|0.5|4|0|389
Chr8 exon 42158892 42159452 42158892 ID=MsG0880044440.01.T01:exon:7958;Parent=MsG0880044440.01.T01
Chr8 exon 42157273 42157543 42157273 ID=MsG0880044440.01.T01:exon:7957;Parent=MsG0880044440.01.T01
Chr8 exon 42157037 42157165 42157037 ID=MsG0880044440.01.T01:exon:7956;Parent=MsG0880044440.01.T01
Chr8 exon 42156708 42156916 42156708 ID=MsG0880044440.01.T01:exon:7955;Parent=MsG0880044440.01.T01
Chr8 CDS 42158892 42159452 42158892 ID=MsG0880044440.01.T01:cds;Parent=MsG0880044440.01.T01
Chr8 CDS 42157273 42157543 42157273 ID=MsG0880044440.01.T01:cds;Parent=MsG0880044440.01.T01
Chr8 CDS 42157037 42157165 42157037 ID=MsG0880044440.01.T01:cds;Parent=MsG0880044440.01.T01
Chr8 CDS 42156708 42156916 42156708 ID=MsG0880044440.01.T01:cds;Parent=MsG0880044440.01.T01
Gene Sequence

>MsG0880044440.01.T01

ATGTCTGCTTTATTGGTTAATGTTCCAAAATTCATTAGTTGGGGATCAGAAAAACATGGTTGTCGTTCACAAGACGCATGGCTTGACATTGTACCGGGGTCCCGAAAACCAATCAATTTCTTCTGGGCTTCTTTCACTCTTTTAGGTTCATTAGGGGTGTTATATATTTCAGTTTCCAGTTATTATGGTAGACATTTTTTCTCTTTGATTTCATCTGAATTTGTAGTTCCTTTTTTGCCACAAGGGGTCACCCTGACTTTCTATGGAATCGCAGGTCTCTTTCTAAGTTTACATTGGTGGCTTCTAATTTTTTGGAATGTGGGGAGTGGTTATAATTTTTTCGATAAAAAAAATAGAATGGTGTGTTTTTTTCGTTACGGATTTCCTGGAACATATCGTCGTATTTTTCTCCGAGTTCGTATGGAAGATATTCAGTCTCTCATACTACAAGCTAACCCTAACCCAGAACCCAGTAGTGGTTATTATTATGATAGGACTCCACGCAACGTTATACAAAAAGCTTGGGACTTGTCCAGATTCTTGAGTGTACCAATGGAAATCGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTAGATATTGAGGTTCCACAAGCGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGTTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGAGGGTGAATCTTTCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTCAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>MsG0880044440.01.T01

MSALLVNVPKFISWGSEKHGCRSQDAWLDIVPGSRKPINFFWASFTLLGSLGVLYISVSSYYGRHFFSLISSEFVVPFLPQGVTLTFYGIAGLFLSLHWWLLIFWNVGSGYNFFDKKNRMVCFFRYGFPGTYRRIFLRVRMEDIQSLILQANPNPEPSSGYYYDRTPRNVIQKAWDLSRFLSVPMEIGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGVVLILPEGFELAPPDRISPEIKEKIDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATEGESFKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLQKKQFEKVQLSEMNF*