Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018632.01.T01 | XP_003604660.1 | 94.615 | 390 | 10 | 4 | 1 | 384 | 1 | 385 | 0 | 733 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018632.01.T01 | G7JN31 | 94.615 | 390 | 10 | 4 | 1 | 384 | 1 | 385 | 0.0 | 733 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000585.01 | MsG0480018632.01 | 0.814113 | 1.818031e-51 | 1.209142e-48 |
MsG0180001294.01 | MsG0480018632.01 | 0.807270 | 5.487430e-50 | 3.043160e-47 |
MsG0180002912.01 | MsG0480018632.01 | 0.806114 | 9.624479e-50 | 5.181019e-47 |
MsG0180003948.01 | MsG0480018632.01 | 0.810888 | 9.214559e-51 | 5.621856e-48 |
MsG0180004060.01 | MsG0480018632.01 | 0.805216 | 1.485968e-49 | 7.816708e-47 |
MsG0180004388.01 | MsG0480018632.01 | 0.826017 | 3.416512e-54 | 3.166006e-51 |
MsG0180005813.01 | MsG0480018632.01 | 0.811443 | 6.984203e-51 | 4.323964e-48 |
MsG0180005944.01 | MsG0480018632.01 | 0.800151 | 1.648525e-48 | 7.620200e-46 |
MsG0180006235.01 | MsG0480018632.01 | 0.813080 | 3.068170e-51 | 1.984097e-48 |
MsG0280010614.01 | MsG0480018632.01 | 0.812320 | 4.499562e-51 | 2.851877e-48 |
MsG0280010735.01 | MsG0480018632.01 | 0.811357 | 7.290982e-51 | 4.503217e-48 |
MsG0280011293.01 | MsG0480018632.01 | 0.810080 | 1.377070e-50 | 8.223005e-48 |
MsG0380012033.01 | MsG0480018632.01 | 0.804658 | 1.943248e-49 | 1.007658e-46 |
MsG0380014126.01 | MsG0480018632.01 | 0.817700 | 2.878857e-52 | 2.111607e-49 |
MsG0380014680.01 | MsG0480018632.01 | 0.833597 | 4.866673e-56 | 5.631227e-53 |
MsG0480018632.01 | MsG0480018637.01 | 0.800587 | 1.344105e-48 | 6.282198e-46 |
MsG0480018632.01 | MsG0480018640.01 | 0.803767 | 2.978537e-49 | 1.509510e-46 |
MsG0480018632.01 | MsG0480019816.01 | 0.817104 | 3.920420e-52 | 2.829003e-49 |
MsG0480018632.01 | MsG0480020445.01 | 0.822832 | 1.917654e-53 | 1.623284e-50 |
MsG0480018632.01 | MsG0480022479.01 | 0.822418 | 2.393988e-53 | 2.002731e-50 |
MsG0480018632.01 | MsG0480022480.01 | 0.832485 | 9.204938e-56 | 1.030277e-52 |
MsG0480018632.01 | MsG0480023245.01 | 0.843845 | 1.090558e-58 | 1.728322e-55 |
MsG0480018632.01 | MsG0480023412.01 | 0.805116 | 1.559278e-49 | 8.181473e-47 |
MsG0480018632.01 | MsG0480023517.01 | 0.807418 | 5.104186e-50 | 2.841523e-47 |
MsG0480018632.01 | MsG0580024205.01 | 0.820592 | 6.321316e-53 | 5.022734e-50 |
MsG0480018632.01 | MsG0580024682.01 | 0.825759 | 3.934831e-54 | 3.619509e-51 |
MsG0480018632.01 | MsG0580025857.01 | 0.816389 | 5.671699e-52 | 4.013453e-49 |
MsG0480018632.01 | MsG0580025858.01 | 0.831658 | 1.473645e-55 | 1.609661e-52 |
MsG0480018632.01 | MsG0580027129.01 | 0.805498 | 1.296703e-49 | 6.870694e-47 |
MsG0480018632.01 | MsG0580029629.01 | 0.805910 | 1.062628e-49 | 5.690510e-47 |
MsG0480018632.01 | MsG0580029906.01 | 0.805776 | 1.133825e-49 | 6.051113e-47 |
MsG0480018632.01 | MsG0680030436.01 | 0.805247 | 1.463958e-49 | 7.706925e-47 |
MsG0480018632.01 | MsG0680032017.01 | 0.814370 | 1.594520e-51 | 1.067965e-48 |
MsG0480018632.01 | MsG0780037109.01 | 0.802664 | 5.040373e-49 | 2.483187e-46 |
MsG0480018632.01 | MsG0780040488.01 | 0.817989 | 2.476670e-52 | 1.831079e-49 |
MsG0480018632.01 | MsG0780041469.01 | 0.800391 | 1.473440e-48 | 6.852582e-46 |
MsG0480018632.01 | MsG0880042967.01 | 0.837308 | 5.611345e-57 | 7.259699e-54 |
MsG0480018632.01 | MsG0880043547.01 | 0.816216 | 6.198344e-52 | 4.365728e-49 |
MsG0480018632.01 | MsG0880043921.01 | 0.843878 | 1.068672e-58 | 1.695446e-55 |
MsG0480018632.01 | MsG0880044917.01 | 0.821223 | 4.525123e-53 | 3.659721e-50 |
MsG0480018632.01 | MsG0880045099.01 | 0.809822 | 1.564398e-50 | 9.279232e-48 |
MsG0480018632.01 | MsG0880045106.01 | 0.815676 | 8.184017e-52 | 5.679566e-49 |
MsG0480018632.01 | MsG0880045429.01 | 0.805231 | 1.475157e-49 | 7.762846e-47 |
MsG0380015468.01 | MsG0480018632.01 | 0.805684 | 1.185486e-49 | 6.311917e-47 |
MsG0380015924.01 | MsG0480018632.01 | 0.810698 | 1.012635e-50 | 6.146781e-48 |
MsG0380015931.01 | MsG0480018632.01 | 0.804871 | 1.754220e-49 | 9.147488e-47 |
MsG0380016227.01 | MsG0480018632.01 | 0.807027 | 6.176953e-50 | 3.403906e-47 |
MsG0380016971.01 | MsG0480018632.01 | 0.800157 | 1.644138e-48 | 7.600812e-46 |
MsG0380017195.01 | MsG0480018632.01 | 0.808490 | 3.019206e-50 | 1.728664e-47 |
MsG0380017228.01 | MsG0480018632.01 | 0.804795 | 1.819475e-49 | 9.468512e-47 |
MsG0380017403.01 | MsG0480018632.01 | 0.801233 | 9.918035e-49 | 4.712185e-46 |
MsG0480018126.01 | MsG0480018632.01 | 0.800016 | 1.756305e-48 | 8.090632e-46 |
MsG0280006586.01 | MsG0480018632.01 | 0.815084 | 1.108224e-51 | 7.566601e-49 |
MsG0280007089.01 | MsG0480018632.01 | 0.827808 | 1.275280e-54 | 1.244371e-51 |
MsG0280007564.01 | MsG0480018632.01 | 0.812160 | 4.876129e-51 | 3.077232e-48 |
MsG0280007609.01 | MsG0480018632.01 | 0.801055 | 1.078671e-48 | 5.102064e-46 |
MsG0280010173.01 | MsG0480018632.01 | 0.814719 | 1.335210e-51 | 9.027431e-49 |
MsG0280010459.01 | MsG0480018632.01 | 0.812227 | 4.713213e-51 | 2.979907e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018632.01.T01 | MTR_4g015650 | 94.615 | 390 | 10 | 4 | 1 | 384 | 1 | 385 | 0.0 | 733 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018632.01.T01 | AT5G01370 | 26.419 | 458 | 229 | 21 | 1 | 383 | 1 | 425 | 8.34e-11 | 63.5 |
Find 50 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGTTAACTGATTTACTTCT+TGG | 0.222003 | 4:-7817138 | None:intergenic |
AGGTGTAATTGTAGTTATTA+TGG | 0.236281 | 4:+7817498 | MsG0480018632.01.T01:CDS |
TTCTTTGGCGACACATTCTT+TGG | 0.242271 | 4:-7817636 | None:intergenic |
CAACTTCTTCATTGCCAAAT+AGG | 0.242438 | 4:+7817556 | MsG0480018632.01.T01:CDS |
TTAGAAGAAGGAACCTTTCT+TGG | 0.251649 | 4:-7817417 | None:intergenic |
CTTTGACAGAAGAAAGTATA+AGG | 0.276142 | 4:+7819175 | MsG0480018632.01.T01:CDS |
TGTTCTGTCTGAATCTTCTT+TGG | 0.284294 | 4:-7817651 | None:intergenic |
CTCTAAGCTTTCAGTCTTTG+AGG | 0.287130 | 4:-7819211 | None:intergenic |
CCTTGCCTTTAAAGTCAAAA+AGG | 0.298670 | 4:+7819016 | MsG0480018632.01.T01:CDS |
TGTTCCTTTGACAACCCTTT+TGG | 0.305104 | 4:-7817100 | None:intergenic |
ACTTCTTGGAACAGAATCTA+AGG | 0.322435 | 4:-7817124 | None:intergenic |
TGGTGTAGTAGCAAGGTTAA+TGG | 0.335546 | 4:+7817056 | MsG0480018632.01.T01:CDS |
CTCAAAGACTGAAAGCTTAG+AGG | 0.336299 | 4:+7819212 | MsG0480018632.01.T01:CDS |
GGTGTAGTAGCAAGGTTAAT+GGG | 0.365165 | 4:+7817057 | MsG0480018632.01.T01:CDS |
TTCTGCTTCTCAACCATTGA+AGG | 0.365205 | 4:-7817240 | None:intergenic |
CATCAATATCAAGAACAAAA+AGG | 0.373511 | 4:-7817269 | None:intergenic |
AAACAAGAAAATTCAAGAAA+TGG | 0.379420 | 4:+7816901 | MsG0480018632.01.T01:CDS |
GAGAAAGTAAACAATAATAA+AGG | 0.383541 | 4:+7819084 | MsG0480018632.01.T01:CDS |
AAGCTTAGAGGAAATTTGTT+TGG | 0.383976 | 4:+7819224 | MsG0480018632.01.T01:CDS |
ATCTTTATTGCCAGTGTCCT+TGG | 0.392267 | 4:+7819047 | MsG0480018632.01.T01:CDS |
AATTGTAGTTATTATGGATA+TGG | 0.396637 | 4:+7817504 | MsG0480018632.01.T01:CDS |
TTCTCTGTTGATGTCGGTGT+GGG | 0.403524 | 4:-7819115 | None:intergenic |
CTTCTTCTAAGTATAAATCA+AGG | 0.422555 | 4:+7817430 | MsG0480018632.01.T01:CDS |
GTTAAGAAGGAGAAGAATCA+AGG | 0.429807 | 4:+7817360 | MsG0480018632.01.T01:CDS |
GGAAATTGTGAGAGTTAAGA+AGG | 0.438622 | 4:+7817347 | MsG0480018632.01.T01:CDS |
CTTGATTTATACTTAGAAGA+AGG | 0.446610 | 4:-7817429 | None:intergenic |
TTGACATCTAGAACTGAAAC+AGG | 0.458423 | 4:-7817693 | None:intergenic |
CTCTTCAACATCTTCTTCCA+AGG | 0.463668 | 4:-7819064 | None:intergenic |
TTGCCAAATAGGCAAAAGAA+AGG | 0.468634 | 4:+7817567 | MsG0480018632.01.T01:CDS |
GATGATTCTATAACTACTCC+TGG | 0.481157 | 4:+7817036 | MsG0480018632.01.T01:CDS |
ATTCACTTCCAAGCACCAAA+AGG | 0.486866 | 4:+7817085 | MsG0480018632.01.T01:CDS |
TTCACTTCCAAGCACCAAAA+GGG | 0.495119 | 4:+7817086 | MsG0480018632.01.T01:CDS |
TTAAGAAGGAGAAGAATCAA+GGG | 0.500858 | 4:+7817361 | MsG0480018632.01.T01:CDS |
GTTAAAAGATGAACCAAGAA+AGG | 0.519478 | 4:+7817404 | MsG0480018632.01.T01:CDS |
TATTATGGATATGGTGATGC+TGG | 0.522889 | 4:+7817513 | MsG0480018632.01.T01:CDS |
GCTTGAGTTTGATCAAAACA+TGG | 0.523774 | 4:+7817173 | MsG0480018632.01.T01:CDS |
TTTGACAGAAGAAAGTATAA+GGG | 0.526153 | 4:+7819176 | MsG0480018632.01.T01:CDS |
TGCCAAATAGGCAAAAGAAA+GGG | 0.531325 | 4:+7817568 | MsG0480018632.01.T01:CDS |
TTCTTCTAAGTATAAATCAA+GGG | 0.554808 | 4:+7817431 | MsG0480018632.01.T01:CDS |
CTCTGCTTCTCTGTTGATGT+CGG | 0.557246 | 4:-7819121 | None:intergenic |
CTTGAGTTTGATCAAAACAT+GGG | 0.565956 | 4:+7817174 | MsG0480018632.01.T01:CDS |
CTTCTCTGTTGATGTCGGTG+TGG | 0.577466 | 4:-7819116 | None:intergenic |
GATTCAGACAGAACATAGCA+TGG | 0.587606 | 4:+7817659 | MsG0480018632.01.T01:CDS |
ACATCTTCTTCCAAGGACAC+TGG | 0.590378 | 4:-7819057 | None:intergenic |
AGCACCAAAAGGGTTGTCAA+AGG | 0.599975 | 4:+7817096 | MsG0480018632.01.T01:CDS |
CTACTCCTGGTGTAGTAGCA+AGG | 0.604802 | 4:+7817049 | MsG0480018632.01.T01:CDS |
ATTAACCTTGCTACTACACC+AGG | 0.623143 | 4:-7817054 | None:intergenic |
GTGTAGTAGCAAGGTTAATG+GGG | 0.625800 | 4:+7817058 | MsG0480018632.01.T01:CDS |
AAACTTGAGAAGAAAGAGCA+AGG | 0.634670 | 4:+7817326 | MsG0480018632.01.T01:CDS |
TCTCTGTTGATGTCGGTGTG+GGG | 0.648101 | 4:-7819114 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATTAAATGATCAAAAA+TGG | - | Chr4:7819262-7819281 | None:intergenic | 10.0% |
!! | AAGAAAAATGTATAAATAAA+GGG | + | Chr4:7818107-7818126 | MsG0480018632.01.T01:intron | 10.0% |
!! | TAAGAAAAATGTATAAATAA+AGG | + | Chr4:7818106-7818125 | MsG0480018632.01.T01:intron | 10.0% |
!!! | ATGTGATTTAATATTTTTAA+TGG | + | Chr4:7817923-7817942 | MsG0480018632.01.T01:intron | 10.0% |
!! | AAAAATAAAAATTAGCAACA+AGG | - | Chr4:7817770-7817789 | None:intergenic | 15.0% |
!! | AAAATAAAAATTAGCAACAA+GGG | - | Chr4:7817769-7817788 | None:intergenic | 15.0% |
!! | AAAATTGTGTCAATTAAATT+GGG | - | Chr4:7818071-7818090 | None:intergenic | 15.0% |
!! | AGAAAAATGTATAAATAAAG+GGG | + | Chr4:7818108-7818127 | MsG0480018632.01.T01:intron | 15.0% |
!! | ATTTAGTGTTATATTGTATT+GGG | + | Chr4:7818172-7818191 | MsG0480018632.01.T01:intron | 15.0% |
!! | TATTTAGTGTTATATTGTAT+TGG | + | Chr4:7818171-7818190 | MsG0480018632.01.T01:intron | 15.0% |
!!! | AATTCATTCCAAAATATTTT+AGG | - | Chr4:7817873-7817892 | None:intergenic | 15.0% |
!!! | TAAAAATAATTTTTAGAGTG+AGG | + | Chr4:7818483-7818502 | MsG0480018632.01.T01:intron | 15.0% |
!!! | TTAACTTTAAAAGAAAAAAG+AGG | + | Chr4:7818625-7818644 | MsG0480018632.01.T01:intron | 15.0% |
!!! | TTTTTTTTAAAAACATTGAG+AGG | - | Chr4:7818356-7818375 | None:intergenic | 15.0% |
!! | AAACAAGAAAATTCAAGAAA+TGG | + | Chr4:7816901-7816920 | MsG0480018632.01.T01:CDS | 20.0% |
!! | AAAGTGGAATATATTGTATT+GGG | + | Chr4:7818131-7818150 | MsG0480018632.01.T01:intron | 20.0% |
!! | AATTGTAGTTATTATGGATA+TGG | + | Chr4:7817504-7817523 | MsG0480018632.01.T01:CDS | 20.0% |
!! | CAAAATTGTGTCAATTAAAT+TGG | - | Chr4:7818072-7818091 | None:intergenic | 20.0% |
!! | GAGAAAGTAAACAATAATAA+AGG | + | Chr4:7819084-7819103 | MsG0480018632.01.T01:CDS | 20.0% |
!! | TAACTGTAATCAAATATTGA+GGG | - | Chr4:7818990-7819009 | None:intergenic | 20.0% |
!! | TTCTTCTAAGTATAAATCAA+GGG | + | Chr4:7817431-7817450 | MsG0480018632.01.T01:CDS | 20.0% |
!! | TTGTGAATTACTTATTTACA+AGG | + | Chr4:7817809-7817828 | MsG0480018632.01.T01:intron | 20.0% |
!!! | AAATGCATTTTTAATCAAAC+AGG | - | Chr4:7818914-7818933 | None:intergenic | 20.0% |
!!! | ATTCCAAAATATTTTAGGTT+CGG | - | Chr4:7817868-7817887 | None:intergenic | 20.0% |
!!! | TATTGATGATAAAAAGAGTA+AGG | + | Chr4:7817284-7817303 | MsG0480018632.01.T01:CDS | 20.0% |
!!! | TCTAACAATTTAAAGTCATT+GGG | + | Chr4:7817979-7817998 | MsG0480018632.01.T01:intron | 20.0% |
!!! | TGAAATGAGTAAGTTATTTT+GGG | + | Chr4:7818219-7818238 | MsG0480018632.01.T01:intron | 20.0% |
!!! | TTCTAACAATTTAAAGTCAT+TGG | + | Chr4:7817978-7817997 | MsG0480018632.01.T01:intron | 20.0% |
!!! | TTGAAATGAGTAAGTTATTT+TGG | + | Chr4:7818218-7818237 | MsG0480018632.01.T01:intron | 20.0% |
! | AAAGAGGAAACAAACATATA+CGG | + | Chr4:7818641-7818660 | MsG0480018632.01.T01:intron | 25.0% |
! | AAGTAATTCACAAACTAGAA+TGG | - | Chr4:7817802-7817821 | None:intergenic | 25.0% |
! | AGGTGTAATTGTAGTTATTA+TGG | + | Chr4:7817498-7817517 | MsG0480018632.01.T01:CDS | 25.0% |
! | CATCAATATCAAGAACAAAA+AGG | - | Chr4:7817272-7817291 | None:intergenic | 25.0% |
! | CTTCTTCTAAGTATAAATCA+AGG | + | Chr4:7817430-7817449 | MsG0480018632.01.T01:CDS | 25.0% |
! | CTTGATTTATACTTAGAAGA+AGG | - | Chr4:7817432-7817451 | None:intergenic | 25.0% |
! | GAAAGTGGAATATATTGTAT+TGG | + | Chr4:7818130-7818149 | MsG0480018632.01.T01:intron | 25.0% |
! | GAATTACTTATTTACAAGGT+TGG | + | Chr4:7817813-7817832 | MsG0480018632.01.T01:intron | 25.0% |
! | GTAACTGTAATCAAATATTG+AGG | - | Chr4:7818991-7819010 | None:intergenic | 25.0% |
! | GTTGCGTATATAGTAAATTA+AGG | - | Chr4:7818451-7818470 | None:intergenic | 25.0% |
! | TTAGAGTGAGGAAATATTTA+GGG | + | Chr4:7818495-7818514 | MsG0480018632.01.T01:intron | 25.0% |
! | TTTAAAAATATGAAGGACCT+TGG | - | Chr4:7818575-7818594 | None:intergenic | 25.0% |
!! | AAGTTAACTGATTTACTTCT+TGG | - | Chr4:7817141-7817160 | None:intergenic | 25.0% |
!! | AATGATTATGCTTTTCTCTA+CGG | + | Chr4:7817714-7817733 | MsG0480018632.01.T01:CDS | 25.0% |
!! | ATGAATTGTGACTTTTGTAT+TGG | + | Chr4:7818324-7818343 | MsG0480018632.01.T01:intron | 25.0% |
!! | ATTGTTTCAACATTTTCAGA+TGG | - | Chr4:7816991-7817010 | None:intergenic | 25.0% |
!! | TTTAGAGTGAGGAAATATTT+AGG | + | Chr4:7818494-7818513 | MsG0480018632.01.T01:intron | 25.0% |
!! | TTTCCGAACCTAAAATATTT+TGG | + | Chr4:7817862-7817881 | MsG0480018632.01.T01:intron | 25.0% |
!! | TTTGACAGAAGAAAGTATAA+GGG | + | Chr4:7819176-7819195 | MsG0480018632.01.T01:CDS | 25.0% |
!!! | ATTTTTCAAGTGTTTCTACA+AGG | + | Chr4:7817478-7817497 | MsG0480018632.01.T01:CDS | 25.0% |
!!! | GATTTCCTTTTTGACTTTAA+AGG | - | Chr4:7819024-7819043 | None:intergenic | 25.0% |
!!! | GGACACTTTTTTTAGAAAAT+GGG | + | Chr4:7818240-7818259 | MsG0480018632.01.T01:intron | 25.0% |
CTTGAGTTTGATCAAAACAT+GGG | + | Chr4:7817174-7817193 | MsG0480018632.01.T01:CDS | 30.0% | |
GTTAAAAGATGAACCAAGAA+AGG | + | Chr4:7817404-7817423 | MsG0480018632.01.T01:CDS | 30.0% | |
TAGAGTGAGGAAATATTTAG+GGG | + | Chr4:7818496-7818515 | MsG0480018632.01.T01:intron | 30.0% | |
TGTATAAATAAAGGGGAAAG+TGG | + | Chr4:7818115-7818134 | MsG0480018632.01.T01:intron | 30.0% | |
TTAAGAAGGAGAAGAATCAA+GGG | + | Chr4:7817361-7817380 | MsG0480018632.01.T01:CDS | 30.0% | |
TTGTGTCAATTAAATTGGGA+CGG | - | Chr4:7818067-7818086 | None:intergenic | 30.0% | |
! | AAGCTTAGAGGAAATTTGTT+TGG | + | Chr4:7819224-7819243 | MsG0480018632.01.T01:CDS | 30.0% |
! | CTTTGACAGAAGAAAGTATA+AGG | + | Chr4:7819175-7819194 | MsG0480018632.01.T01:CDS | 30.0% |
! | TTAGTGTCTAGAACTTTCAA+TGG | + | Chr4:7817896-7817915 | MsG0480018632.01.T01:intron | 30.0% |
!! | TTTTAGAGAAGTTCCTTCAA+TGG | + | Chr4:7817227-7817246 | MsG0480018632.01.T01:CDS | 30.0% |
!!! | GGGACACTTTTTTTAGAAAA+TGG | + | Chr4:7818239-7818258 | MsG0480018632.01.T01:intron | 30.0% |
AAACTTGAGAAGAAAGAGCA+AGG | + | Chr4:7817326-7817345 | MsG0480018632.01.T01:CDS | 35.0% | |
ACCAGTAAACAAGTTGTGTA+AGG | - | Chr4:7818021-7818040 | None:intergenic | 35.0% | |
ACTTCTTGGAACAGAATCTA+AGG | - | Chr4:7817127-7817146 | None:intergenic | 35.0% | |
AGAAAATGGGTCAGTTATTC+CGG | + | Chr4:7818253-7818272 | MsG0480018632.01.T01:intron | 35.0% | |
AGAGTGAGGAAATATTTAGG+GGG | + | Chr4:7818497-7818516 | MsG0480018632.01.T01:intron | 35.0% | |
CAACTTCTTCATTGCCAAAT+AGG | + | Chr4:7817556-7817575 | MsG0480018632.01.T01:CDS | 35.0% | |
CAATGTTGCTCTTTGTAAGA+AGG | - | Chr4:7818767-7818786 | None:intergenic | 35.0% | |
GATGATTCTATAACTACTCC+TGG | + | Chr4:7817036-7817055 | MsG0480018632.01.T01:CDS | 35.0% | |
GCTTGAGTTTGATCAAAACA+TGG | + | Chr4:7817173-7817192 | MsG0480018632.01.T01:CDS | 35.0% | |
GGAAATTGTGAGAGTTAAGA+AGG | + | Chr4:7817347-7817366 | MsG0480018632.01.T01:CDS | 35.0% | |
GTTAAGAAGGAGAAGAATCA+AGG | + | Chr4:7817360-7817379 | MsG0480018632.01.T01:CDS | 35.0% | |
TGAACCAAAAATGAGGAACA+AGG | + | Chr4:7817596-7817615 | MsG0480018632.01.T01:CDS | 35.0% | |
TGCCAAATAGGCAAAAGAAA+GGG | + | Chr4:7817568-7817587 | MsG0480018632.01.T01:CDS | 35.0% | |
TGTTCTGTCTGAATCTTCTT+TGG | - | Chr4:7817654-7817673 | None:intergenic | 35.0% | |
TTAGAAGAAGGAACCTTTCT+TGG | - | Chr4:7817420-7817439 | None:intergenic | 35.0% | |
TTGCCAAATAGGCAAAAGAA+AGG | + | Chr4:7817567-7817586 | MsG0480018632.01.T01:CDS | 35.0% | |
! | AACCCTTTCTTTTGCCTATT+TGG | - | Chr4:7817573-7817592 | None:intergenic | 35.0% |
! | ACATTTTCAGATGGATACAC+TGG | - | Chr4:7816982-7817001 | None:intergenic | 35.0% |
! | TATTATGGATATGGTGATGC+TGG | + | Chr4:7817513-7817532 | MsG0480018632.01.T01:CDS | 35.0% |
! | TCCTTACACAACTTGTTTAC+TGG | + | Chr4:7818017-7818036 | MsG0480018632.01.T01:intron | 35.0% |
! | TTACACAACTTGTTTACTGG+TGG | + | Chr4:7818020-7818039 | MsG0480018632.01.T01:intron | 35.0% |
! | TTCACCTTGTTCCTCATTTT+TGG | - | Chr4:7817603-7817622 | None:intergenic | 35.0% |
! | TTGACATCTAGAACTGAAAC+AGG | - | Chr4:7817696-7817715 | None:intergenic | 35.0% |
!! | CCTTGCCTTTAAAGTCAAAA+AGG | + | Chr4:7819016-7819035 | MsG0480018632.01.T01:CDS | 35.0% |
!! | GGTTTGTTGAACCAAAAATG+AGG | + | Chr4:7817589-7817608 | MsG0480018632.01.T01:CDS | 35.0% |
!!! | CCTTTTTGACTTTAAAGGCA+AGG | - | Chr4:7819019-7819038 | None:intergenic | 35.0% |
ATCTTTATTGCCAGTGTCCT+TGG | + | Chr4:7819047-7819066 | MsG0480018632.01.T01:CDS | 40.0% | |
ATTAACCTTGCTACTACACC+AGG | - | Chr4:7817057-7817076 | None:intergenic | 40.0% | |
ATTCACTTCCAAGCACCAAA+AGG | + | Chr4:7817085-7817104 | MsG0480018632.01.T01:CDS | 40.0% | |
CTCAAAGACTGAAAGCTTAG+AGG | + | Chr4:7819212-7819231 | MsG0480018632.01.T01:CDS | 40.0% | |
CTCTAAGCTTTCAGTCTTTG+AGG | - | Chr4:7819214-7819233 | None:intergenic | 40.0% | |
CTCTTCAACATCTTCTTCCA+AGG | - | Chr4:7819067-7819086 | None:intergenic | 40.0% | |
GAAAATGGGTCAGTTATTCC+GGG | + | Chr4:7818254-7818273 | MsG0480018632.01.T01:intron | 40.0% | |
GATTCAGACAGAACATAGCA+TGG | + | Chr4:7817659-7817678 | MsG0480018632.01.T01:CDS | 40.0% | |
GGTGTAGTAGCAAGGTTAAT+GGG | + | Chr4:7817057-7817076 | MsG0480018632.01.T01:CDS | 40.0% | |
GTGTAGTAGCAAGGTTAATG+GGG | + | Chr4:7817058-7817077 | MsG0480018632.01.T01:CDS | 40.0% | |
TGGTGTAGTAGCAAGGTTAA+TGG | + | Chr4:7817056-7817075 | MsG0480018632.01.T01:CDS | 40.0% | |
TGTCAATTAAATTGGGACGG+AGG | - | Chr4:7818064-7818083 | None:intergenic | 40.0% | |
TTCACTTCCAAGCACCAAAA+GGG | + | Chr4:7817086-7817105 | MsG0480018632.01.T01:CDS | 40.0% | |
TTCTGCTTCTCAACCATTGA+AGG | - | Chr4:7817243-7817262 | None:intergenic | 40.0% | |
TTCTTTGGCGACACATTCTT+TGG | - | Chr4:7817639-7817658 | None:intergenic | 40.0% | |
! | ATGCTGAAGTTTTCACACGT+CGG | - | Chr4:7817206-7817225 | None:intergenic | 40.0% |
! | TGTTCCTTTGACAACCCTTT+TGG | - | Chr4:7817103-7817122 | None:intergenic | 40.0% |
! | TTTTCAGATGGATACACTGG+TGG | - | Chr4:7816979-7816998 | None:intergenic | 40.0% |
AAGGACCTTGGACTTCTACT+TGG | - | Chr4:7818563-7818582 | None:intergenic | 45.0% | |
ACATCTTCTTCCAAGGACAC+TGG | - | Chr4:7819060-7819079 | None:intergenic | 45.0% | |
AGCACCAAAAGGGTTGTCAA+AGG | + | Chr4:7817096-7817115 | MsG0480018632.01.T01:CDS | 45.0% | |
CTCTGCTTCTCTGTTGATGT+CGG | - | Chr4:7819124-7819143 | None:intergenic | 45.0% | |
GTGAGGAAATATTTAGGGGG+CGG | + | Chr4:7818500-7818519 | MsG0480018632.01.T01:intron | 45.0% | |
TTCTCTGTTGATGTCGGTGT+GGG | - | Chr4:7819118-7819137 | None:intergenic | 45.0% | |
!! | CTCTACGGAGCTGATTTTTC+TGG | + | Chr4:7817729-7817748 | MsG0480018632.01.T01:CDS | 45.0% |
!!! | TTGACAACCCTTTTGGTGCT+TGG | - | Chr4:7817096-7817115 | None:intergenic | 45.0% |
!!! | TTTTAAATTTAAAAATATGA+AGG | - | Chr4:7818582-7818601 | None:intergenic | 5.0% |
AAATGATACTCCCTCCGTCC+CGG | - | Chr4:7818275-7818294 | None:intergenic | 50.0% | |
ATGGGTCAGTTATTCCGGGA+CGG | + | Chr4:7818258-7818277 | MsG0480018632.01.T01:intron | 50.0% | |
CGTCACCAAGTAGAAGTCCA+AGG | + | Chr4:7818555-7818574 | MsG0480018632.01.T01:intron | 50.0% | |
CTACTCCTGGTGTAGTAGCA+AGG | + | Chr4:7817049-7817068 | MsG0480018632.01.T01:CDS | 50.0% | |
CTTCTCTGTTGATGTCGGTG+TGG | - | Chr4:7819119-7819138 | None:intergenic | 50.0% | |
TCTCTGTTGATGTCGGTGTG+GGG | - | Chr4:7819117-7819136 | None:intergenic | 50.0% | |
GACAGTGACTCGTGCGATGT+CGG | - | Chr4:7818697-7818716 | None:intergenic | 55.0% | |
GTCAGTTATTCCGGGACGGA+GGG | + | Chr4:7818262-7818281 | MsG0480018632.01.T01:intron | 55.0% | |
GGTCAGTTATTCCGGGACGG+AGG | + | Chr4:7818261-7818280 | MsG0480018632.01.T01:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 7816895 | 7819305 | 7816895 | ID=MsG0480018632.01;Name=MsG0480018632.01 |
Chr4 | mRNA | 7816895 | 7819305 | 7816895 | ID=MsG0480018632.01.T01;Parent=MsG0480018632.01;Name=MsG0480018632.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|384 |
Chr4 | exon | 7816895 | 7817750 | 7816895 | ID=MsG0480018632.01.T01:exon:2487;Parent=MsG0480018632.01.T01 |
Chr4 | exon | 7819007 | 7819305 | 7819007 | ID=MsG0480018632.01.T01:exon:2488;Parent=MsG0480018632.01.T01 |
Chr4 | CDS | 7816895 | 7817750 | 7816895 | ID=MsG0480018632.01.T01:cds;Parent=MsG0480018632.01.T01 |
Chr4 | CDS | 7819007 | 7819305 | 7819007 | ID=MsG0480018632.01.T01:cds;Parent=MsG0480018632.01.T01 |
Gene Sequence |
Protein sequence |