AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014126.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014126.01.T01 MTR_3g051190 95.714 210 9 0 164 373 286 495 1.82e-138 404
MsG0380014126.01.T01 MTR_3g051190 77.660 188 9 2 1 183 1 160 1.35e-90 281
MsG0380014126.01.T01 MTR_2g031790 35.500 200 129 0 167 366 127 326 5.90e-35 131
MsG0380014126.01.T01 MTR_2g031810 33.990 203 134 0 164 366 147 349 4.74e-32 124
MsG0380014126.01.T01 MTR_3g008470 31.343 268 166 4 106 365 257 514 8.27e-29 117
MsG0380014126.01.T01 MTR_3g008470 36.923 130 82 0 54 183 111 240 1.54e-18 87.4
MsG0380014126.01.T01 MTR_1g014250 33.673 196 125 2 175 366 145 339 2.29e-27 111
MsG0380014126.01.T01 MTR_1g014250 33.673 196 125 2 175 366 268 462 4.47e-27 112
MsG0380014126.01.T01 MTR_2g031770 36.283 113 71 1 54 166 33 144 3.02e-17 80.5
MsG0380014126.01.T01 MTR_1g103540 47.143 70 34 1 285 354 19 85 5.77e-14 68.2
MsG0380014126.01.T01 MTR_1g103530 40.506 79 47 0 54 132 122 200 1.82e-13 72.0
MsG0380014126.01.T01 MTR_1g014220 36.283 113 69 3 55 166 54 164 5.19e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014126.01.T01 AT5G54860 71.357 199 57 0 175 373 292 490 2.02e-101 309
MsG0380014126.01.T01 AT5G54860 58.879 214 53 3 1 209 1 184 6.06e-72 233
MsG0380014126.01.T01 AT1G04570 33.663 202 134 0 164 365 147 348 6.12e-34 130
MsG0380014126.01.T01 AT1G04570 33.663 202 134 0 164 365 295 496 9.98e-33 129
MsG0380014126.01.T01 AT1G04570 33.898 118 77 1 54 170 97 214 1.78e-14 75.1
MsG0380014126.01.T01 AT2G33280 32.828 198 133 0 168 365 118 315 1.46e-31 122
MsG0380014126.01.T01 AT2G33280 32.512 203 137 0 168 370 192 394 5.56e-31 122
MsG0380014126.01.T01 AT2G33280 37.000 100 62 1 73 171 5 104 2.27e-12 68.6
MsG0380014126.01.T01 AT2G33280 32.828 198 133 0 168 365 300 497 3.07e-30 121
MsG0380014126.01.T01 AT2G33280 36.134 119 75 1 54 171 94 212 4.31e-17 83.2
MsG0380014126.01.T01 AT1G64890 33.659 205 136 0 164 368 228 432 5.33e-30 120
MsG0380014126.01.T01 AT1G64890 30.579 121 84 0 54 174 29 149 8.51e-15 75.9
MsG0380014126.01.T01 AT5G25050 30.769 195 132 1 175 366 263 457 2.69e-25 107
MsG0380014126.01.T01 AT5G25050 35.398 113 67 2 64 176 67 173 2.91e-12 68.2
MsG0380014126.01.T01 AT1G79710 32.407 216 139 3 157 366 247 461 8.07e-25 105
MsG0380014126.01.T01 AT1G79710 32.710 107 64 2 64 167 71 172 6.62e-11 63.9
MsG0380014126.01.T01 AT1G79710 32.407 216 139 3 157 366 247 461 8.07e-25 105
MsG0380014126.01.T01 AT1G79710 32.710 107 64 2 64 167 71 172 6.62e-11 63.9
MsG0380014126.01.T01 AT2G32040 36.313 179 110 2 176 354 222 396 9.29e-25 105
MsG0380014126.01.T01 AT2G32040 38.158 76 47 0 54 129 5 80 3.68e-12 67.8
MsG0380014126.01.T01 AT5G25040 29.231 195 135 1 175 366 114 308 9.93e-25 103
MsG0380014126.01.T01 AT2G32040 36.313 179 110 2 176 354 353 527 2.61e-24 104
MsG0380014126.01.T01 AT2G32040 38.158 76 47 0 54 129 136 211 7.37e-12 67.0
MsG0380014126.01.T01 AT5G25040 29.231 195 135 1 175 366 261 455 2.76e-24 104
MsG0380014126.01.T01 AT5G10820 28.638 213 148 2 158 367 262 473 4.95e-24 103
MsG0380014126.01.T01 AT5G25040 30.000 210 135 4 164 366 276 480 6.10e-24 103
MsG0380014126.01.T01 AT5G25040 28.221 163 114 1 175 334 261 423 3.95e-16 80.1
MsG0380014126.01.T01 AT1G79710 32.710 107 64 2 64 167 71 172 5.28e-11 63.9

Find 93 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGATTGTATCCCGATTAA+AGG 0.188248 3:+50179409 MsG0380014126.01.T01:CDS
ATGCAACTGAAAACACAAAT+TGG 0.197963 3:-50178365 None:intergenic
TGGAGCATTAAACCATTATA+TGG 0.239224 3:+50178396 MsG0380014126.01.T01:CDS
GATGCACCTGTTGCTTCTTT+TGG 0.267349 3:-50182903 None:intergenic
ATCCGTTTACTTCCTTTAAT+CGG 0.280491 3:-50179421 None:intergenic
ATGCCTTTCCTAATCTTATC+TGG 0.289468 3:+50182675 MsG0380014126.01.T01:CDS
TTTGGCTCGGCACTTGTTGA+TGG 0.295783 3:+50181721 MsG0380014126.01.T01:CDS
TTCTAAGCGTCATATGCTTT+AGG 0.310369 3:-50181507 None:intergenic
AATGATTCATACCCATATAA+TGG 0.311735 3:-50178408 None:intergenic
TGTAAATTGGAAAATATTAG+AGG 0.316689 3:+50183024 MsG0380014126.01.T01:three_prime_UTR
AAGATTATCTTTAAGTTGAT+AGG 0.318713 3:-50178322 None:intergenic
AATCGGTTGAATGCTGCATT+TGG 0.334076 3:+50177698 MsG0380014126.01.T01:CDS
AATAAAGTTCCTTCAATTCC+TGG 0.338588 3:-50182711 None:intergenic
TTGATGAATACCATTGGAAT+TGG 0.356869 3:+50182944 MsG0380014126.01.T01:three_prime_UTR
TCGCCTTTGGTGTACCAGAT+AGG 0.358572 3:+50181686 MsG0380014126.01.T01:CDS
GATAGGGTTATGGTGCTCTT+TGG 0.362387 3:+50181703 MsG0380014126.01.T01:CDS
GAATAAGACTGTTGAAAGAT+TGG 0.368387 3:-50181380 None:intergenic
AAAGCTCGAAGCATCATTCT+TGG 0.370525 3:+50181423 MsG0380014126.01.T01:CDS
TCTATATTGAACATAGATTC+AGG 0.374425 3:+50182801 MsG0380014126.01.T01:CDS
TCCGTTTACTTCCTTTAATC+GGG 0.395107 3:-50179420 None:intergenic
AAGTAAACGGATTTCGTACT+TGG 0.400717 3:+50179432 MsG0380014126.01.T01:CDS
CATTCAACCGATTCGTCCAT+TGG 0.412337 3:-50177688 None:intergenic
AAGAGCACCATAACCCTATC+TGG 0.416214 3:-50181700 None:intergenic
ATTAAGAACTGTATTGATGC+AGG 0.416261 3:+50178269 MsG0380014126.01.T01:intron
AAGCTCGAAGCATCATTCTT+GGG 0.419923 3:+50181424 MsG0380014126.01.T01:CDS
ATCGGTTGAATGCTGCATTT+GGG 0.421182 3:+50177699 MsG0380014126.01.T01:CDS
GTACGCGTTGTTGGTTGGTT+AGG 0.423916 3:+50181451 MsG0380014126.01.T01:CDS
TTGGGGACGGTACGCGTTGT+TGG 0.428599 3:+50181442 MsG0380014126.01.T01:CDS
TGGTGTACCAGATAGGGTTA+TGG 0.430972 3:+50181693 MsG0380014126.01.T01:CDS
ATCAGAAACAGAAAAGCAAT+TGG 0.433826 3:-50182879 None:intergenic
AATAAGACTGTTGAAAGATT+GGG 0.450409 3:-50181379 None:intergenic
CTGTGCTCTCCCTTGTACCA+TGG 0.460291 3:+50179464 MsG0380014126.01.T01:CDS
TCTTTGTGTGAGATTATTGA+TGG 0.462273 3:+50177809 MsG0380014126.01.T01:CDS
CTATGCCCTCCAGGAATTGA+AGG 0.462869 3:+50182702 MsG0380014126.01.T01:CDS
CGCCTTTGGTGTACCAGATA+GGG 0.464246 3:+50181687 MsG0380014126.01.T01:CDS
TTTCATGTCAATAAACAACT+TGG 0.464904 3:+50182740 MsG0380014126.01.T01:CDS
ATAGTTGTCCAGATAAGATT+AGG 0.465222 3:-50182683 None:intergenic
TGCAACTGAAAACACAAATT+GGG 0.466177 3:-50178364 None:intergenic
TGGAGGACAGACCTATGTCT+TGG 0.476709 3:+50181332 MsG0380014126.01.T01:intron
TTCTTGACTGTGCAAAACTT+AGG 0.479731 3:+50179541 MsG0380014126.01.T01:CDS
TCCCGATTAAAGGAAGTAAA+CGG 0.487254 3:+50179419 MsG0380014126.01.T01:CDS
CTAAAATAAACCATGGTACA+AGG 0.490097 3:-50179474 None:intergenic
GGAAAATATTAGAGGAAATG+AGG 0.496578 3:+50183032 MsG0380014126.01.T01:three_prime_UTR
CTGATACCAAAAGAAGCAAC+AGG 0.498367 3:+50182897 MsG0380014126.01.T01:CDS
TATAATGGTTTAATGCTCCA+TGG 0.503129 3:-50178393 None:intergenic
AAAGATGAAGAAGTGAAACC+TGG 0.505698 3:-50177760 None:intergenic
GGTTATGGTGCTCTTTGGCT+CGG 0.505871 3:+50181708 MsG0380014126.01.T01:CDS
CAATGATCCAATGGACGAAT+CGG 0.506461 3:+50177681 None:intergenic
CAGGTATGCTCATGTTGCGT+TGG 0.512392 3:+50181618 MsG0380014126.01.T01:intron
GGAGCATTAAACCATTATAT+GGG 0.515410 3:+50178397 MsG0380014126.01.T01:CDS
TCTGGACAACTATGCCCTCC+AGG 0.515434 3:+50182693 MsG0380014126.01.T01:CDS
AACAACTTGGGAACAACGAT+AGG 0.523273 3:+50182753 MsG0380014126.01.T01:CDS
TGCAGATTGCCGTTGTGTCT+AGG 0.528098 3:+50181656 MsG0380014126.01.T01:CDS
GGACGGTACGCGTTGTTGGT+TGG 0.528967 3:+50181446 MsG0380014126.01.T01:CDS
TTCATGTCAATAAACAACTT+GGG 0.529203 3:+50182741 MsG0380014126.01.T01:CDS
TAGTTATTGATGAATACCAT+TGG 0.549832 3:+50182938 MsG0380014126.01.T01:three_prime_UTR
CTTGTCATATCTTACAGCCT+CGG 0.554473 3:-50179602 None:intergenic
GCGTCATATGCTTTAGGTGA+CGG 0.557890 3:-50181501 None:intergenic
TTGAAGTAACAATGATCCAA+TGG 0.560228 3:+50177672 None:intergenic
AGTCTTATTCTACTACGAAA+CGG 0.561877 3:+50181393 MsG0380014126.01.T01:CDS
TTAAGAACTGTATTGATGCA+GGG 0.563441 3:+50178270 MsG0380014126.01.T01:intron
GCACAGTCAAGAATACCATC+AGG 0.566177 3:-50179531 None:intergenic
ATAATGGTTTAATGCTCCAT+GGG 0.569418 3:-50178392 None:intergenic
AAAGATTGGGAACAGTAATG+TGG 0.587892 3:-50181366 None:intergenic
AAACACAAATTGGGAAGCTG+AGG 0.590346 3:-50178355 None:intergenic
GGTTGGTTAGGACTTATGCT+CGG 0.594212 3:+50181463 MsG0380014126.01.T01:CDS
TGGGAACAGTAATGTGGGCA+AGG 0.597103 3:-50181360 None:intergenic
ACAACTTGGGAACAACGATA+GGG 0.598636 3:+50182754 MsG0380014126.01.T01:CDS
GAATTCAACATGGCACCTGA+TGG 0.602006 3:+50179516 MsG0380014126.01.T01:CDS
AGCTCGAAGCATCATTCTTG+GGG 0.605840 3:+50181425 MsG0380014126.01.T01:CDS
ATCAACAACAACATCTGCCA+TGG 0.606162 3:-50179569 None:intergenic
CGAAGCATCATTCTTGGGGA+CGG 0.607115 3:+50181429 MsG0380014126.01.T01:CDS
TGTCCAGATAAGATTAGGAA+AGG 0.608005 3:-50182678 None:intergenic
TATCAACTATCAAAATACCT+AGG 0.608426 3:-50182991 None:intergenic
GTGTGTATAACCAATTCCAA+TGG 0.609701 3:-50182954 None:intergenic
TAAAATAAACCATGGTACAA+GGG 0.610741 3:-50179473 None:intergenic
AAGATTGGGAACAGTAATGT+GGG 0.612894 3:-50181365 None:intergenic
CAACCTTGAGGAATTCAACA+TGG 0.615312 3:+50179506 MsG0380014126.01.T01:CDS
TTGCTTGATTTACTTCACCC+AGG 0.615539 3:+50177742 MsG0380014126.01.T01:CDS
GTGCCATGTTGAATTCCTCA+AGG 0.618903 3:-50179509 None:intergenic
CTTAAACCTAAAATAAACCA+TGG 0.629672 3:-50179481 None:intergenic
TAGGTGACGGTTATAAACGA+AGG 0.632468 3:-50181488 None:intergenic
AACCCTATCTGGTACACCAA+AGG 0.632946 3:-50181689 None:intergenic
TAGGTTTAAGTTCAACCTTG+AGG 0.633543 3:+50179494 MsG0380014126.01.T01:CDS
CTTTGTGTGAGATTATTGAT+GGG 0.634024 3:+50177810 MsG0380014126.01.T01:CDS
AAGTTCCTTCAATTCCTGGA+GGG 0.637778 3:-50182707 None:intergenic
AAGATGAAGAAGTGAAACCT+GGG 0.645431 3:-50177759 None:intergenic
AACACAAATTGGGAAGCTGA+GGG 0.655369 3:-50178354 None:intergenic
AATCTGCAGAAGATTCAAGA+AGG 0.662867 3:-50181641 None:intergenic
GCAAAACTTAGGATCAGCCA+TGG 0.664884 3:+50179552 MsG0380014126.01.T01:CDS
AAAGTTCCTTCAATTCCTGG+AGG 0.671510 3:-50182708 None:intergenic
CTTATTCTACTACGAAACGG+AGG 0.704156 3:+50181396 MsG0380014126.01.T01:CDS
TGTTGATGCGATGATAGCCG+AGG 0.715574 3:+50179585 MsG0380014126.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATATAATTATATATGAA+TGG - Chr3:50180812-50180831 None:intergenic 10.0%
!!! AAACTATAATGTTTTATATA+GGG + Chr3:50182181-50182200 MsG0380014126.01.T01:intron 10.0%
!!! TTTTTGTAAGTTAAAATAAT+TGG - Chr3:50181061-50181080 None:intergenic 10.0%
!! AAAAAAAAATACTATCTTTC+AGG - Chr3:50181977-50181996 None:intergenic 15.0%
!! AAAAAAAATACTATCTTTCA+GGG - Chr3:50181976-50181995 None:intergenic 15.0%
!! ACTAATAAAAAGTAATGTTT+CGG + Chr3:50181151-50181170 MsG0380014126.01.T01:intron 15.0%
!! ATATGAAAAGAACAAAAATA+AGG + Chr3:50179139-50179158 MsG0380014126.01.T01:intron 15.0%
!!! AAAGTAGATATTTGAAATTT+TGG + Chr3:50180724-50180743 MsG0380014126.01.T01:intron 15.0%
!!! CAAACTATAATGTTTTATAT+AGG + Chr3:50182180-50182199 MsG0380014126.01.T01:intron 15.0%
!!! TAGTATTTTTTTTTTGCTTA+TGG + Chr3:50181983-50182002 MsG0380014126.01.T01:intron 15.0%
!! CAAATATCTACTTTAATGAT+TGG - Chr3:50180718-50180737 None:intergenic 20.0%
!! CTATCTTAAAAGTTAGATAT+AGG + Chr3:50178541-50178560 MsG0380014126.01.T01:intron 20.0%
!! TGTAAATTGGAAAATATTAG+AGG + Chr3:50183024-50183043 MsG0380014126.01.T01:three_prime_UTR 20.0%
!! TTAAAAGTTAGATATAGGAT+TGG + Chr3:50178546-50178565 MsG0380014126.01.T01:intron 20.0%
!!! AAGATTATCTTTAAGTTGAT+AGG - Chr3:50178325-50178344 None:intergenic 20.0%
!!! ATATTTTCCAATTTACAAAG+TGG - Chr3:50183021-50183040 None:intergenic 20.0%
!!! ATATTTTCCACTTTGTAAAT+TGG + Chr3:50183011-50183030 MsG0380014126.01.T01:three_prime_UTR 20.0%
!!! ATCTGGTAGTTTTATTTATT+GGG + Chr3:50177852-50177871 MsG0380014126.01.T01:intron 20.0%
!!! ATGGAGATTATCTTTTTAAT+TGG - Chr3:50181021-50181040 None:intergenic 20.0%
!!! CTGTTTACTTTTTAAGATTA+TGG + Chr3:50180747-50180766 MsG0380014126.01.T01:intron 20.0%
!!! TATGTTCTTCTTTTTATTAC+AGG + Chr3:50181599-50181618 MsG0380014126.01.T01:intron 20.0%
! AAAAGATGATATCTTCATTC+TGG + Chr3:50181877-50181896 MsG0380014126.01.T01:intron 25.0%
! AAATACATGATACTCAATTG+GGG - Chr3:50178442-50178461 None:intergenic 25.0%
! AACACTTAATCATAGAGAAT+AGG - Chr3:50180217-50180236 None:intergenic 25.0%
! AAGGATGTAACACAAAAAAA+TGG - Chr3:50182378-50182397 None:intergenic 25.0%
! AATAAGACTGTTGAAAGATT+GGG - Chr3:50181382-50181401 None:intergenic 25.0%
! AATAATTGGCCATAATGTAA+AGG - Chr3:50181047-50181066 None:intergenic 25.0%
! AATGATTCATACCCATATAA+TGG - Chr3:50178411-50178430 None:intergenic 25.0%
! AGTACAAGAAAAAGAAAGAA+GGG + Chr3:50180541-50180560 MsG0380014126.01.T01:intron 25.0%
! ATATTTGAGAATATAAGAGG+AGG - Chr3:50178894-50178913 None:intergenic 25.0%
! ATCATAAATTGCTTTCTTCA+AGG - Chr3:50180656-50180675 None:intergenic 25.0%
! ATTAACCAAACCAGATTATA+AGG - Chr3:50179373-50179392 None:intergenic 25.0%
! CAAATACATGATACTCAATT+GGG - Chr3:50178443-50178462 None:intergenic 25.0%
! CAGTAACTATACAAACTAAA+CGG - Chr3:50179304-50179323 None:intergenic 25.0%
! CTTAAACCTAAAATAAACCA+TGG - Chr3:50179484-50179503 None:intergenic 25.0%
! GACATATTTGAGAATATAAG+AGG - Chr3:50178897-50178916 None:intergenic 25.0%
! TAAAATAAACCATGGTACAA+GGG - Chr3:50179476-50179495 None:intergenic 25.0%
! TAAAGGGACTAATTCAATAT+GGG - Chr3:50182047-50182066 None:intergenic 25.0%
! TAGTACAAGAAAAAGAAAGA+AGG + Chr3:50180540-50180559 MsG0380014126.01.T01:intron 25.0%
! TAGTTATTGATGAATACCAT+TGG + Chr3:50182938-50182957 MsG0380014126.01.T01:three_prime_UTR 25.0%
! TATCAACTATCAAAATACCT+AGG - Chr3:50182994-50183013 None:intergenic 25.0%
! TATTTGATTCAGTTGTAGAA+AGG + Chr3:50178457-50178476 MsG0380014126.01.T01:intron 25.0%
! TCAAATACATGATACTCAAT+TGG - Chr3:50178444-50178463 None:intergenic 25.0%
! TCAAATACATTATCTACCAA+GGG + Chr3:50181124-50181143 MsG0380014126.01.T01:intron 25.0%
! TCTATATTGAACATAGATTC+AGG + Chr3:50182801-50182820 MsG0380014126.01.T01:CDS 25.0%
! TGAAGCATAATGATTTGATA+TGG + Chr3:50182351-50182370 MsG0380014126.01.T01:intron 25.0%
! TTAAAGGGACTAATTCAATA+TGG - Chr3:50182048-50182067 None:intergenic 25.0%
! TTATCTTGGACAATGAAATT+AGG - Chr3:50179647-50179666 None:intergenic 25.0%
! TTCAAATACATTATCTACCA+AGG + Chr3:50181123-50181142 MsG0380014126.01.T01:intron 25.0%
! TTCATGTCAATAAACAACTT+GGG + Chr3:50182741-50182760 MsG0380014126.01.T01:CDS 25.0%
! TTCTCTGTAATTGAAATATG+AGG + Chr3:50179075-50179094 MsG0380014126.01.T01:intron 25.0%
! TTGATCTAACAACTGAAATA+AGG - Chr3:50179811-50179830 None:intergenic 25.0%
! TTTCATGTCAATAAACAACT+TGG + Chr3:50182740-50182759 MsG0380014126.01.T01:CDS 25.0%
!! ACCGAAAAAGTGTATATTAA+AGG + Chr3:50182210-50182229 MsG0380014126.01.T01:intron 25.0%
!! CCGAAAAAGTGTATATTAAA+GGG + Chr3:50182211-50182230 MsG0380014126.01.T01:intron 25.0%
!! CTTTTCATATCTCATAAGAT+GGG - Chr3:50179129-50179148 None:intergenic 25.0%
!! TCTTTTCATATCTCATAAGA+TGG - Chr3:50179130-50179149 None:intergenic 25.0%
!! TGTTTTCAACACATATTACT+CGG - Chr3:50179273-50179292 None:intergenic 25.0%
!! TTTTCTAAGCTACATAACAT+AGG - Chr3:50178760-50178779 None:intergenic 25.0%
!!! ATTTTTTTGTGTTACATCCT+TGG + Chr3:50182377-50182396 MsG0380014126.01.T01:intron 25.0%
!!! CCCTTTAATATACACTTTTT+CGG - Chr3:50182214-50182233 None:intergenic 25.0%
!!! CTTTTTAATTGGCTGAAAAT+TGG - Chr3:50181010-50181029 None:intergenic 25.0%
!!! GATCTGGTAGTTTTATTTAT+TGG + Chr3:50177851-50177870 MsG0380014126.01.T01:intron 25.0%
!!! TCCAATGTTTGTGTTTTTAT+CGG + Chr3:50180936-50180955 MsG0380014126.01.T01:intron 25.0%
AAAGTATGCTTCCAGTAAAA+CGG + Chr3:50178931-50178950 MsG0380014126.01.T01:intron 30.0%
AAATTGCTTTCTTCAAGGAA+TGG - Chr3:50180651-50180670 None:intergenic 30.0%
AAGACCAAGATAATGATTGA+AGG - Chr3:50180273-50180292 None:intergenic 30.0%
AATAAAGTTCCTTCAATTCC+TGG - Chr3:50182714-50182733 None:intergenic 30.0%
AATATGTGTTGAAAACAGCA+AGG + Chr3:50179276-50179295 MsG0380014126.01.T01:intron 30.0%
AATTCTCATGTAAGCAACTA+AGG + Chr3:50181531-50181550 MsG0380014126.01.T01:intron 30.0%
ACAAACCTTTAATGTCTACA+TGG - Chr3:50180984-50181003 None:intergenic 30.0%
ACCGATAAAAACACAAACAT+TGG - Chr3:50180940-50180959 None:intergenic 30.0%
AGAAATACATCCATCATAGA+AGG - Chr3:50179846-50179865 None:intergenic 30.0%
AGCAATCGTCTAATTAGAAA+GGG + Chr3:50178965-50178984 MsG0380014126.01.T01:intron 30.0%
AGTTGAGGATTATATTGCAA+AGG + Chr3:50180450-50180469 MsG0380014126.01.T01:intron 30.0%
ATAAAACTACCAGATCTCAA+AGG - Chr3:50177847-50177866 None:intergenic 30.0%
ATAATGGTTTAATGCTCCAT+GGG - Chr3:50178395-50178414 None:intergenic 30.0%
ATAGTTGTCCAGATAAGATT+AGG - Chr3:50182686-50182705 None:intergenic 30.0%
ATCAGAAACAGAAAAGCAAT+TGG - Chr3:50182882-50182901 None:intergenic 30.0%
ATCCGTTTACTTCCTTTAAT+CGG - Chr3:50179424-50179443 None:intergenic 30.0%
ATGCAACTGAAAACACAAAT+TGG - Chr3:50178368-50178387 None:intergenic 30.0%
ATTGGTTACCTCAAAATCAT+TGG - Chr3:50180700-50180719 None:intergenic 30.0%
CAAAAATAAGGCATGAAAGA+AGG + Chr3:50179151-50179170 MsG0380014126.01.T01:intron 30.0%
CAATATGCAACAGTTTATCT+TGG - Chr3:50179661-50179680 None:intergenic 30.0%
CACATACAATGCAAAGAAAT+TGG - Chr3:50179880-50179899 None:intergenic 30.0%
CATGATAATAACTGTATGCA+AGG - Chr3:50180391-50180410 None:intergenic 30.0%
CTAAAATAAACCATGGTACA+AGG - Chr3:50179477-50179496 None:intergenic 30.0%
CTATCTTTCAGGGATTAAAA+AGG - Chr3:50181966-50181985 None:intergenic 30.0%
CTTTGTGTGAGATTATTGAT+GGG + Chr3:50177810-50177829 MsG0380014126.01.T01:CDS 30.0%
GAAACTTCTAATTACTTGTC+CGG - Chr3:50178107-50178126 None:intergenic 30.0%
GAATAAGACTGTTGAAAGAT+TGG - Chr3:50181383-50181402 None:intergenic 30.0%
GGAAAATATTAGAGGAAATG+AGG + Chr3:50183032-50183051 MsG0380014126.01.T01:three_prime_UTR 30.0%
GGACAAGTAATTAGAAGTTT+CGG + Chr3:50178106-50178125 MsG0380014126.01.T01:intron 30.0%
GTAGAGATACTTAAGATAGA+TGG + Chr3:50178640-50178659 MsG0380014126.01.T01:intron 30.0%
TAAAACTTCGCTATTTACAG+AGG - Chr3:50180431-50180450 None:intergenic 30.0%
TACAAGAACTAATTCAGCAT+AGG + Chr3:50182120-50182139 MsG0380014126.01.T01:intron 30.0%
TATAATGGTTTAATGCTCCA+TGG - Chr3:50178396-50178415 None:intergenic 30.0%
TCAAATTAGTCAATCCAAAC+AGG - Chr3:50179974-50179993 None:intergenic 30.0%
TCCAAAGAGAAAAATCAGAA+GGG - Chr3:50182639-50182658 None:intergenic 30.0%
TCTTTGTGTGAGATTATTGA+TGG + Chr3:50177809-50177828 MsG0380014126.01.T01:CDS 30.0%
TGATTAAGTGTTTGCTTTGT+TGG + Chr3:50180225-50180244 MsG0380014126.01.T01:intron 30.0%
TGCAACTGAAAACACAAATT+GGG - Chr3:50178367-50178386 None:intergenic 30.0%
TTCCAAAGAGAAAAATCAGA+AGG - Chr3:50182640-50182659 None:intergenic 30.0%
TTGAATGTAATCACAAGTGT+TGG + Chr3:50178044-50178063 MsG0380014126.01.T01:intron 30.0%
TTGATGAATACCATTGGAAT+TGG + Chr3:50182944-50182963 MsG0380014126.01.T01:three_prime_UTR 30.0%
! AATAGGTATTACTAGCTTAG+AGG + Chr3:50182296-50182315 MsG0380014126.01.T01:intron 30.0%
! AATGAGTTGAAAACAGCTTA+TGG - Chr3:50180065-50180084 None:intergenic 30.0%
! AATTAGAAAGGGAAAGTACA+AGG + Chr3:50178976-50178995 MsG0380014126.01.T01:intron 30.0%
! AGAATCTCTGTTTTATGTTG+TGG + Chr3:50181312-50181331 MsG0380014126.01.T01:intron 30.0%
! ATAGGTATTACTAGCTTAGA+GGG + Chr3:50182297-50182316 MsG0380014126.01.T01:intron 30.0%
! ATCATTATCTTGGTCTTCAA+TGG + Chr3:50180276-50180295 MsG0380014126.01.T01:intron 30.0%
! ATTAAGAACTGTATTGATGC+AGG + Chr3:50178269-50178288 MsG0380014126.01.T01:intron 30.0%
! ATTATCATGCTTTTCTGTGA+AGG + Chr3:50180402-50180421 MsG0380014126.01.T01:intron 30.0%
! ATTATTAGCTTCATTCTGTG+AGG - Chr3:50181263-50181282 None:intergenic 30.0%
! CACTTCAAATAGTTTTTCCT+AGG + Chr3:50182974-50182993 MsG0380014126.01.T01:three_prime_UTR 30.0%
! CTTTTTATTAGTTGAACCCT+TGG - Chr3:50181143-50181162 None:intergenic 30.0%
! GGAGCATTAAACCATTATAT+GGG + Chr3:50178397-50178416 MsG0380014126.01.T01:CDS 30.0%
! TCTCTTTGGAAAAAAAATGC+AGG + Chr3:50182649-50182668 MsG0380014126.01.T01:intron 30.0%
! TCTTTTGACAATCTTCTGTT+AGG + Chr3:50182825-50182844 MsG0380014126.01.T01:CDS 30.0%
! TGGAGCATTAAACCATTATA+TGG + Chr3:50178396-50178415 MsG0380014126.01.T01:CDS 30.0%
! TTAAGAACTGTATTGATGCA+GGG + Chr3:50178270-50178289 MsG0380014126.01.T01:intron 30.0%
!! AGTCTTATTCTACTACGAAA+CGG + Chr3:50181393-50181412 MsG0380014126.01.T01:CDS 30.0%
!! CATTTGGGTTTTCATTTCTT+TGG + Chr3:50177714-50177733 MsG0380014126.01.T01:CDS 30.0%
!! CTAAGGATTGTTTTATTGGT+TGG + Chr3:50181548-50181567 MsG0380014126.01.T01:intron 30.0%
!! CTTGTACCATGGTTTATTTT+AGG + Chr3:50179475-50179494 MsG0380014126.01.T01:CDS 30.0%
!! GCAACTAAGGATTGTTTTAT+TGG + Chr3:50181544-50181563 MsG0380014126.01.T01:intron 30.0%
!! TTTTACTGGAAGCATACTTT+CGG - Chr3:50178931-50178950 None:intergenic 30.0%
!!! AAATAGCGAAGTTTTAGTTG+AGG + Chr3:50180435-50180454 MsG0380014126.01.T01:intron 30.0%
!!! AGCTGTTTTTGTAAGCTATT+CGG - Chr3:50180101-50180120 None:intergenic 30.0%
!!! CTATGTCATGTGTTTTTTGT+AGG - Chr3:50178826-50178845 None:intergenic 30.0%
!!! TAGTTTGTTCCTCATTGTTT+TGG - Chr3:50182167-50182186 None:intergenic 30.0%
!!! TTTGTTTTTCCTTTGAGATC+TGG + Chr3:50177835-50177854 MsG0380014126.01.T01:intron 30.0%
!!! TTTTTCAAGCACATCTCAAT+AGG + Chr3:50182279-50182298 MsG0380014126.01.T01:intron 30.0%
AAAGATGAAGAAGTGAAACC+TGG - Chr3:50177763-50177782 None:intergenic 35.0%
AAAGATTGGGAACAGTAATG+TGG - Chr3:50181369-50181388 None:intergenic 35.0%
AACAAACACACACTCTAATG+AGG - Chr3:50181223-50181242 None:intergenic 35.0%
AACATGAAAATCAGCACGAA+TGG + Chr3:50181843-50181862 MsG0380014126.01.T01:intron 35.0%
AAGATGAAGAAGTGAAACCT+GGG - Chr3:50177762-50177781 None:intergenic 35.0%
AAGATTGGGAACAGTAATGT+GGG - Chr3:50181368-50181387 None:intergenic 35.0%
AAGGCAAGATCTTAAGGTTA+AGG + Chr3:50179170-50179189 MsG0380014126.01.T01:intron 35.0%
AATCTGCAGAAGATTCAAGA+AGG - Chr3:50181644-50181663 None:intergenic 35.0%
AATTGGCCATAATGTAAAGG+AGG - Chr3:50181044-50181063 None:intergenic 35.0%
AGCATAGGCCAAATATTACA+CGG + Chr3:50182135-50182154 MsG0380014126.01.T01:intron 35.0%
ATCAATCCAAATAGACTCCA+AGG - Chr3:50182397-50182416 None:intergenic 35.0%
ATGCCTTTCCTAATCTTATC+TGG + Chr3:50182675-50182694 MsG0380014126.01.T01:CDS 35.0%
ATTTACTTTATCACTGCACC+TGG + Chr3:50182249-50182268 MsG0380014126.01.T01:intron 35.0%
CATTTGTCAACCTTCTATGA+TGG + Chr3:50179833-50179852 MsG0380014126.01.T01:intron 35.0%
CCTTTAATGTCTACATGGTT+CGG - Chr3:50180979-50180998 None:intergenic 35.0%
CTTCCAATCTCTCAATACTA+CGG + Chr3:50179706-50179725 MsG0380014126.01.T01:intron 35.0%
GAGACCTTCAATCATTATCT+TGG + Chr3:50180266-50180285 MsG0380014126.01.T01:intron 35.0%
GAGCAATCGTCTAATTAGAA+AGG + Chr3:50178964-50178983 MsG0380014126.01.T01:intron 35.0%
GCAAAGGATTTGCATACAAA+TGG + Chr3:50180466-50180485 MsG0380014126.01.T01:intron 35.0%
GGTTTAGTCCGTGTAATATT+TGG - Chr3:50182146-50182165 None:intergenic 35.0%
GTCACAAAATTAAAGCGATC+TGG - Chr3:50179762-50179781 None:intergenic 35.0%
GTGTGTATAACCAATTCCAA+TGG - Chr3:50182957-50182976 None:intergenic 35.0%
TATGAAATGTGCTCTCAACA+AGG - Chr3:50180779-50180798 None:intergenic 35.0%
TCATAGAGAATAGGCATGTT+TGG - Chr3:50180208-50180227 None:intergenic 35.0%
TCCCGATTAAAGGAAGTAAA+CGG + Chr3:50179419-50179438 MsG0380014126.01.T01:CDS 35.0%
TCCGTTTACTTCCTTTAATC+GGG - Chr3:50179423-50179442 None:intergenic 35.0%
TCTGATTGTATCCCGATTAA+AGG + Chr3:50179409-50179428 MsG0380014126.01.T01:CDS 35.0%
TGAAAGAAGGCAAGATCTTA+AGG + Chr3:50179164-50179183 MsG0380014126.01.T01:intron 35.0%
TGCATGACACTAACATATGT+CGG + Chr3:50178078-50178097 MsG0380014126.01.T01:intron 35.0%
TGCTTCCTTATAATCTGGTT+TGG + Chr3:50179365-50179384 MsG0380014126.01.T01:intron 35.0%
TGCTTGAAAAAGATGAATCC+AGG - Chr3:50182270-50182289 None:intergenic 35.0%
TGTCCAGATAAGATTAGGAA+AGG - Chr3:50182681-50182700 None:intergenic 35.0%
TTACATCCTTGGAGTCTATT+TGG + Chr3:50182388-50182407 MsG0380014126.01.T01:intron 35.0%
TTCTAAGCGTCATATGCTTT+AGG - Chr3:50181510-50181529 None:intergenic 35.0%
TTCTTGACTGTGCAAAACTT+AGG + Chr3:50179541-50179560 MsG0380014126.01.T01:CDS 35.0%
TTGCATACAAATGGTAGTAG+TGG + Chr3:50180475-50180494 MsG0380014126.01.T01:intron 35.0%
TTGGAAGCTTATCTATATGC+AGG - Chr3:50179693-50179712 None:intergenic 35.0%
! AAATCGAAGATTCTGGAGAA+AGG + Chr3:50180601-50180620 MsG0380014126.01.T01:intron 35.0%
! AAGTAAACGGATTTCGTACT+TGG + Chr3:50179432-50179451 MsG0380014126.01.T01:CDS 35.0%
! ATCTCTGTTTTATGTTGTGG+AGG + Chr3:50181315-50181334 MsG0380014126.01.T01:intron 35.0%
! ATTCTACGTGTTGATCTATG+AGG + Chr3:50177969-50177988 MsG0380014126.01.T01:intron 35.0%
! TAACAGTTTTCATTCCTCAC+TGG + Chr3:50181928-50181947 MsG0380014126.01.T01:intron 35.0%
! TAGGTTTAAGTTCAACCTTG+AGG + Chr3:50179494-50179513 MsG0380014126.01.T01:CDS 35.0%
! TTAGACAGCCAATGATTTTG+AGG + Chr3:50180689-50180708 MsG0380014126.01.T01:intron 35.0%
! TTTACTGGAAGCATACTTTC+GGG - Chr3:50178930-50178949 None:intergenic 35.0%
! TTTCAGTTGCATTTTTCCCA+TGG + Chr3:50178376-50178395 MsG0380014126.01.T01:CDS 35.0%
! TTTGCGGAGTTCTCTTTTTA+AGG + Chr3:50179942-50179961 MsG0380014126.01.T01:intron 35.0%
! TTTTTGCTTAAGCATGTGCA+TGG + Chr3:50181797-50181816 MsG0380014126.01.T01:intron 35.0%
!! TGGTTTGGTTAATGATGAAC+AGG + Chr3:50179380-50179399 MsG0380014126.01.T01:intron 35.0%
!!! AGGGTTTTAGGTCATTTGTA+TGG + Chr3:50178289-50178308 MsG0380014126.01.T01:CDS 35.0%
!!! ATTCGTGCTGATTTTCATGT+TGG - Chr3:50181844-50181863 None:intergenic 35.0%
!!! GCTGTTTTTGTAAGCTATTC+GGG - Chr3:50180100-50180119 None:intergenic 35.0%
AAACACAAATTGGGAAGCTG+AGG - Chr3:50178358-50178377 None:intergenic 40.0%
AAAGTTCCTTCAATTCCTGG+AGG - Chr3:50182711-50182730 None:intergenic 40.0%
AACAACTTGGGAACAACGAT+AGG + Chr3:50182753-50182772 MsG0380014126.01.T01:CDS 40.0%
AACACAAATTGGGAAGCTGA+GGG - Chr3:50178357-50178376 None:intergenic 40.0%
AAGTTCCTTCAATTCCTGGA+GGG - Chr3:50182710-50182729 None:intergenic 40.0%
AATCGGTTGAATGCTGCATT+TGG + Chr3:50177698-50177717 MsG0380014126.01.T01:CDS 40.0%
ACAACTTGGGAACAACGATA+GGG + Chr3:50182754-50182773 MsG0380014126.01.T01:CDS 40.0%
AGAGATGATTCTGATGCCTA+TGG + Chr3:50178787-50178806 MsG0380014126.01.T01:intron 40.0%
ATCAACAACAACATCTGCCA+TGG - Chr3:50179572-50179591 None:intergenic 40.0%
ATCGGTTGAATGCTGCATTT+GGG + Chr3:50177699-50177718 MsG0380014126.01.T01:CDS 40.0%
CAACCTTGAGGAATTCAACA+TGG + Chr3:50179506-50179525 MsG0380014126.01.T01:CDS 40.0%
CACACTGCTTCCTTATAATC+TGG + Chr3:50179360-50179379 MsG0380014126.01.T01:intron 40.0%
CATAAGCTCTTCACTCTTCA+GGG + Chr3:50182518-50182537 MsG0380014126.01.T01:intron 40.0%
CCGAACCATGTAGACATTAA+AGG + Chr3:50180976-50180995 MsG0380014126.01.T01:intron 40.0%
CGGACTAAACCAAAACAATG+AGG + Chr3:50182155-50182174 MsG0380014126.01.T01:intron 40.0%
CTCCATCCTCCTTTACATTA+TGG + Chr3:50181035-50181054 MsG0380014126.01.T01:intron 40.0%
CTGATACCAAAAGAAGCAAC+AGG + Chr3:50182897-50182916 MsG0380014126.01.T01:CDS 40.0%
CTTATTCTACTACGAAACGG+AGG + Chr3:50181396-50181415 MsG0380014126.01.T01:CDS 40.0%
CTTGTCATATCTTACAGCCT+CGG - Chr3:50179605-50179624 None:intergenic 40.0%
GCAAGGAAAAACCAAGACAT+AGG - Chr3:50181346-50181365 None:intergenic 40.0%
GGACAAAATTTAAGCCAGTG+AGG - Chr3:50181945-50181964 None:intergenic 40.0%
TACCAGCAAATCGAAGATTC+TGG + Chr3:50180594-50180613 MsG0380014126.01.T01:intron 40.0%
TAGTCAATCCAAACAGGAAC+AGG - Chr3:50179968-50179987 None:intergenic 40.0%
TCATAAGCTCTTCACTCTTC+AGG + Chr3:50182517-50182536 MsG0380014126.01.T01:intron 40.0%
TGCACTTCATGGAATCTTTG+CGG + Chr3:50179926-50179945 MsG0380014126.01.T01:intron 40.0%
TTGAAGGTCTCCTGCAAATT+TGG - Chr3:50180257-50180276 None:intergenic 40.0%
TTGCTTGATTTACTTCACCC+AGG + Chr3:50177742-50177761 MsG0380014126.01.T01:CDS 40.0%
! AAAGCTCGAAGCATCATTCT+TGG + Chr3:50181423-50181442 MsG0380014126.01.T01:CDS 40.0%
! AAGCTCGAAGCATCATTCTT+GGG + Chr3:50181424-50181443 MsG0380014126.01.T01:CDS 40.0%
! AAGTGTTTGCTTTGTTGGTC+AGG + Chr3:50180230-50180249 MsG0380014126.01.T01:intron 40.0%
! ACAACGATAGGGTCTTTTGT+AGG + Chr3:50182765-50182784 MsG0380014126.01.T01:CDS 40.0%
! AGTGTTTGCTTTGTTGGTCA+GGG + Chr3:50180231-50180250 MsG0380014126.01.T01:intron 40.0%
! GCCCTTCTGATTTTTCTCTT+TGG + Chr3:50182635-50182654 MsG0380014126.01.T01:intron 40.0%
! TAGGTGACGGTTATAAACGA+AGG - Chr3:50181491-50181510 None:intergenic 40.0%
!! AATATGCGGGAGTTTGTTAG+GGG + Chr3:50180309-50180328 MsG0380014126.01.T01:intron 40.0%
!! CACAAGTGTTGGTGTTGTTT+CGG + Chr3:50178055-50178074 MsG0380014126.01.T01:intron 40.0%
!! CTGTATTGATGCAGGGTTTT+AGG + Chr3:50178277-50178296 MsG0380014126.01.T01:CDS 40.0%
!! GAATATGCGGGAGTTTGTTA+GGG + Chr3:50180308-50180327 MsG0380014126.01.T01:intron 40.0%
!! TAGAAGTTTCGGTGCTATAG+AGG + Chr3:50178117-50178136 MsG0380014126.01.T01:intron 40.0%
!!! TTTTAAGGCCTGTTCCTGTT+TGG + Chr3:50179957-50179976 MsG0380014126.01.T01:intron 40.0%
AACCCTATCTGGTACACCAA+AGG - Chr3:50181692-50181711 None:intergenic 45.0%
AAGCTATTCGGGAGAGCTTA+TGG - Chr3:50180089-50180108 None:intergenic 45.0%
ATGGAACCACTTTGTTGCCA+AGG - Chr3:50180632-50180651 None:intergenic 45.0%
ATGTCCGACATCAACACATC+TGG + Chr3:50180862-50180881 MsG0380014126.01.T01:intron 45.0%
CACACACTCTAATGAGGAGT+AGG - Chr3:50181217-50181236 None:intergenic 45.0%
CACTAACATATGTCGGACAC+CGG + Chr3:50178085-50178104 MsG0380014126.01.T01:intron 45.0%
GAATTCAACATGGCACCTGA+TGG + Chr3:50179516-50179535 MsG0380014126.01.T01:CDS 45.0%
GAGATTCCTTGGCAACAAAG+TGG + Chr3:50180623-50180642 MsG0380014126.01.T01:intron 45.0%
GATAGGGTTATGGTGCTCTT+TGG + Chr3:50181703-50181722 MsG0380014126.01.T01:CDS 45.0%
GATTCCATGAAGTGCATGCA+TGG - Chr3:50179922-50179941 None:intergenic 45.0%
GCAAAACTTAGGATCAGCCA+TGG + Chr3:50179552-50179571 MsG0380014126.01.T01:CDS 45.0%
GCACAGTCAAGAATACCATC+AGG - Chr3:50179534-50179553 None:intergenic 45.0%
GGCCATAATGTAAAGGAGGA+TGG - Chr3:50181040-50181059 None:intergenic 45.0%
GTATGCTTCCAGTAAAACGG+TGG + Chr3:50178934-50178953 MsG0380014126.01.T01:intron 45.0%
GTCAGTATCGTGTCTAGTGT+CGG - Chr3:50177997-50178016 None:intergenic 45.0%
GTGCCATGTTGAATTCCTCA+AGG - Chr3:50179512-50179531 None:intergenic 45.0%
TCAATACTACGGACCAGTGA+AGG + Chr3:50179717-50179736 MsG0380014126.01.T01:intron 45.0%
TCTGGAGAAAGGAGATTCCT+TGG + Chr3:50180612-50180631 MsG0380014126.01.T01:intron 45.0%
TGAACCATGCATGCACTTCA+TGG + Chr3:50179915-50179934 MsG0380014126.01.T01:intron 45.0%
TGGTGTACCAGATAGGGTTA+TGG + Chr3:50181693-50181712 MsG0380014126.01.T01:CDS 45.0%
TGTCCGACATCAACACATCT+GGG + Chr3:50180863-50180882 MsG0380014126.01.T01:intron 45.0%
! AGCTCGAAGCATCATTCTTG+GGG + Chr3:50181425-50181444 MsG0380014126.01.T01:CDS 45.0%
! ATAGGGTCTTTTGTAGGTGC+TGG + Chr3:50182771-50182790 MsG0380014126.01.T01:CDS 45.0%
! ATCTTGGTCTTCAATGGCTG+TGG + Chr3:50180282-50180301 MsG0380014126.01.T01:intron 45.0%
! CTCCAGAATCTTCGATTTGC+TGG - Chr3:50180599-50180618 None:intergenic 45.0%
! GAGAGCACACTTCAGATTGA+TGG + Chr3:50180831-50180850 MsG0380014126.01.T01:intron 45.0%
! GCGTCATATGCTTTAGGTGA+CGG - Chr3:50181504-50181523 None:intergenic 45.0%
! GGAATATGCGGGAGTTTGTT+AGG + Chr3:50180307-50180326 MsG0380014126.01.T01:intron 45.0%
! GGTCCGTAGTATTGAGAGAT+TGG - Chr3:50179712-50179731 None:intergenic 45.0%
! GGTTGGTTAGGACTTATGCT+CGG + Chr3:50181463-50181482 MsG0380014126.01.T01:CDS 45.0%
! GTACCCAGATGTGTTGATGT+CGG - Chr3:50180869-50180888 None:intergenic 45.0%
! TCTTGGTCTTCAATGGCTGT+GGG + Chr3:50180283-50180302 MsG0380014126.01.T01:intron 45.0%
!! AAGAGCACCATAACCCTATC+TGG - Chr3:50181703-50181722 None:intergenic 45.0%
!! AGGTGCAAAGAAAGCACCAT+AGG - Chr3:50178806-50178825 None:intergenic 45.0%
!! ATATGCGGGAGTTTGTTAGG+GGG + Chr3:50180310-50180329 MsG0380014126.01.T01:intron 45.0%
!! CATTCAACCGATTCGTCCAT+TGG - Chr3:50177691-50177710 None:intergenic 45.0%
!! GATGCACCTGTTGCTTCTTT+TGG - Chr3:50182906-50182925 None:intergenic 45.0%
!!! ATAATTTTATTTTGAATTTA+TGG + Chr3:50178722-50178741 MsG0380014126.01.T01:intron 5.0%
!!! ATATATCAATTTTATTTTAA+AGG - Chr3:50182064-50182083 None:intergenic 5.0%
!!! TAAAATTGATATATATTTTA+TGG + Chr3:50182070-50182089 MsG0380014126.01.T01:intron 5.0%
!!! TATATCAATTTTATTTTAAA+GGG - Chr3:50182063-50182082 None:intergenic 5.0%
!!! TTTGTTTATATTTTTATTTA+TGG + Chr3:50181237-50181256 MsG0380014126.01.T01:intron 5.0%
AAGCATGTGCATGGTACGAG+AGG + Chr3:50181806-50181825 MsG0380014126.01.T01:intron 50.0%
ACATTCCCTTCGACCTTCAC+TGG - Chr3:50179733-50179752 None:intergenic 50.0%
ATGGCTGTGGGAGGAATATG+CGG + Chr3:50180295-50180314 MsG0380014126.01.T01:intron 50.0%
CAGGTATGCTCATGTTGCGT+TGG + Chr3:50181618-50181637 MsG0380014126.01.T01:intron 50.0%
CTATGCCCTCCAGGAATTGA+AGG + Chr3:50182702-50182721 MsG0380014126.01.T01:CDS 50.0%
CTTCCAGTAAAACGGTGGTG+GGG + Chr3:50178939-50178958 MsG0380014126.01.T01:intron 50.0%
GCTTCCAGTAAAACGGTGGT+GGG + Chr3:50178938-50178957 MsG0380014126.01.T01:intron 50.0%
GGTTATGGTGCTCTTTGGCT+CGG + Chr3:50181708-50181727 MsG0380014126.01.T01:CDS 50.0%
TGCAGATTGCCGTTGTGTCT+AGG + Chr3:50181656-50181675 MsG0380014126.01.T01:CDS 50.0%
TGCTTCCAGTAAAACGGTGG+TGG + Chr3:50178937-50178956 MsG0380014126.01.T01:intron 50.0%
TGGAGGACAGACCTATGTCT+TGG + Chr3:50181332-50181351 MsG0380014126.01.T01:intron 50.0%
TGGGAACAGTAATGTGGGCA+AGG - Chr3:50181363-50181382 None:intergenic 50.0%
TGTTGATGCGATGATAGCCG+AGG + Chr3:50179585-50179604 MsG0380014126.01.T01:CDS 50.0%
TTGGTCAGGGCCAAATTTGC+AGG + Chr3:50180244-50180263 MsG0380014126.01.T01:intron 50.0%
! CGAAGCATCATTCTTGGGGA+CGG + Chr3:50181429-50181448 MsG0380014126.01.T01:CDS 50.0%
! CGCCTTTGGTGTACCAGATA+GGG + Chr3:50181687-50181706 MsG0380014126.01.T01:CDS 50.0%
! GTACGCGTTGTTGGTTGGTT+AGG + Chr3:50181451-50181470 MsG0380014126.01.T01:CDS 50.0%
! TCGCCTTTGGTGTACCAGAT+AGG + Chr3:50181686-50181705 MsG0380014126.01.T01:CDS 50.0%
!! TTTGGCTCGGCACTTGTTGA+TGG + Chr3:50181721-50181740 MsG0380014126.01.T01:CDS 50.0%
!!! GTCTTTTGTAGGTGCTGGCT+TGG + Chr3:50182776-50182795 MsG0380014126.01.T01:CDS 50.0%
ACGGACCAGTGAAGGTCGAA+GGG + Chr3:50179725-50179744 MsG0380014126.01.T01:intron 55.0%
CTGTGCTCTCCCTTGTACCA+TGG + Chr3:50179464-50179483 MsG0380014126.01.T01:CDS 55.0%
TACGGACCAGTGAAGGTCGA+AGG + Chr3:50179724-50179743 MsG0380014126.01.T01:intron 55.0%
TCTGGACAACTATGCCCTCC+AGG + Chr3:50182693-50182712 MsG0380014126.01.T01:CDS 55.0%
TGGCTGTGGGAGGAATATGC+GGG + Chr3:50180296-50180315 MsG0380014126.01.T01:intron 55.0%
TGGTCTTCAATGGCTGTGGG+AGG + Chr3:50180286-50180305 MsG0380014126.01.T01:intron 55.0%
! CATCCCCACCACCGTTTTAC+TGG - Chr3:50178945-50178964 None:intergenic 55.0%
GGACGGTACGCGTTGTTGGT+TGG + Chr3:50181446-50181465 MsG0380014126.01.T01:CDS 60.0%
TTGGGGACGGTACGCGTTGT+TGG + Chr3:50181442-50181461 MsG0380014126.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 50177683 50183139 50177683 ID=MsG0380014126.01;Name=MsG0380014126.01
Chr3 mRNA 50177683 50183139 50177683 ID=MsG0380014126.01.T01;Parent=MsG0380014126.01;Name=MsG0380014126.01.T01;_AED=0.38;_eAED=0.42;_QI=0|0.6|0.33|1|0.6|0.5|6|207|373
Chr3 exon 50177683 50177831 50177683 ID=MsG0380014126.01.T01:exon:9574;Parent=MsG0380014126.01.T01
Chr3 exon 50178275 50178418 50178275 ID=MsG0380014126.01.T01:exon:9575;Parent=MsG0380014126.01.T01
Chr3 exon 50179402 50179627 50179402 ID=MsG0380014126.01.T01:exon:9576;Parent=MsG0380014126.01.T01
Chr3 exon 50181337 50181539 50181337 ID=MsG0380014126.01.T01:exon:9577;Parent=MsG0380014126.01.T01
Chr3 exon 50181621 50181758 50181621 ID=MsG0380014126.01.T01:exon:9578;Parent=MsG0380014126.01.T01
Chr3 exon 50182671 50183139 50182671 ID=MsG0380014126.01.T01:exon:9579;Parent=MsG0380014126.01.T01
Chr3 CDS 50177683 50177831 50177683 ID=MsG0380014126.01.T01:cds;Parent=MsG0380014126.01.T01
Chr3 CDS 50178275 50178418 50178275 ID=MsG0380014126.01.T01:cds;Parent=MsG0380014126.01.T01
Chr3 CDS 50179402 50179627 50179402 ID=MsG0380014126.01.T01:cds;Parent=MsG0380014126.01.T01
Chr3 CDS 50181337 50181539 50181337 ID=MsG0380014126.01.T01:cds;Parent=MsG0380014126.01.T01
Chr3 CDS 50181621 50181758 50181621 ID=MsG0380014126.01.T01:cds;Parent=MsG0380014126.01.T01
Chr3 CDS 50182671 50182932 50182671 ID=MsG0380014126.01.T01:cds;Parent=MsG0380014126.01.T01
Chr3 three_prime_UTR 50182933 50183139 50182933 ID=MsG0380014126.01.T01:three_prime_utr;Parent=MsG0380014126.01.T01
Gene Sequence

>MsG0380014126.01.T01

ATGATCCAATGGACGAATCGGTTGAATGCTGCATTTGGGTTTTCATTTCTTTGGTTAATTTGCTTGATTTACTTCACCCAGGTTTCACTTCTTCATCTTTTGTCAATTTATTTGATAAATATTAAATCTTTGTGTGAGATTATTGATGGAACTGTATTGATGCAGGGTTTTAGGTCATTTGTATGGACAGCAATTTCCTATCAACTTAAAGATAATCTTCATTTGTCACCCTCAGCTTCCCAATTTGTGTTTTCAGTTGCATTTTTCCCATGGAGCATTAAACCATTATATGGGATACTTTCTGATTGTATCCCGATTAAAGGAAGTAAACGGATTTCGTACTTGGTCATTGCGACTGTGCTCTCCCTTGTACCATGGTTTATTTTAGGTTTAAGTTCAACCTTGAGGAATTCAACATGGCACCTGATGGTATTCTTGACTGTGCAAAACTTAGGATCAGCCATGGCAGATGTTGTTGTTGATGCGATGATAGCCGAGGCTGTAAGATATGACAAGTATGACAGACCTATGTCTTGGTTTTTCCTTGCCCACATTACTGTTCCCAATCTTTCAACAGTCTTATTCTACTACGAAACGGAGGTTCTAAAGCTCGAAGCATCATTCTTGGGGACGGTACGCGTTGTTGGTTGGTTAGGACTTATGCTCGGAACCTTCGTTTATAACCGTCACCTAAAGCATATGACGCTTAGAAGAATTCTCATGTATGCTCATGTTGCGTTGGCCTTCTTGAATCTTCTGCAGATTGCCGTTGTGTCTAGGAAAAATATCGCCTTTGGTGTACCAGATAGGGTTATGGTGCTCTTTGGCTCGGCACTTGTTGATGGAATCAATCAATTCAAGTTTATGCCTTTCCTAATCTTATCTGGACAACTATGCCCTCCAGGAATTGAAGGAACTTTATTTGCTCTTTTCATGTCAATAAACAACTTGGGAACAACGATAGGGTCTTTTGTAGGTGCTGGCTTGGCTTCTATATTGAACATAGATTCAGGATCTTTTGACAATCTTCTGTTAGGCATTGTCATTCATGCTTTGTGCAATTTCATTCCAATTGCTTTTCTGTTTCTGATACCAAAAGAAGCAACAGGTGCATCAGCATAG

Protein sequence

>MsG0380014126.01.T01

MIQWTNRLNAAFGFSFLWLICLIYFTQVSLLHLLSIYLINIKSLCEIIDGTVLMQGFRSFVWTAISYQLKDNLHLSPSASQFVFSVAFFPWSIKPLYGILSDCIPIKGSKRISYLVIATVLSLVPWFILGLSSTLRNSTWHLMVFLTVQNLGSAMADVVVDAMIAEAVRYDKYDRPMSWFFLAHITVPNLSTVLFYYETEVLKLEASFLGTVRVVGWLGLMLGTFVYNRHLKHMTLRRILMYAHVALAFLNLLQIAVVSRKNIAFGVPDRVMVLFGSALVDGINQFKFMPFLILSGQLCPPGIEGTLFALFMSINNLGTTIGSFVGAGLASILNIDSGSFDNLLLGIVIHALCNFIPIAFLFLIPKEATGASA*