AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017195.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017195.01.T01 MTR_3g102730 98.462 390 6 0 1 390 1 390 0.0 804
MsG0380017195.01.T01 MTR_3g013890 98.205 390 7 0 1 390 1 390 0.0 803
MsG0380017195.01.T01 MTR_3g102760 82.564 390 68 0 1 390 1 390 0.0 702
MsG0380017195.01.T01 MTR_3g102770 81.026 390 73 1 1 390 1 389 0.0 674
MsG0380017195.01.T01 MTR_1g018610 72.379 391 106 2 1 390 34 423 0.0 600
MsG0380017195.01.T01 MTR_1g018590 69.620 395 114 2 1 390 1 394 0.0 576
MsG0380017195.01.T01 MTR_1g018580 66.154 390 106 3 1 390 1 364 0.0 522
MsG0380017195.01.T01 MTR_4g073090 43.085 376 195 9 26 390 5 372 1.05e-97 296
MsG0380017195.01.T01 MTR_4g121570 42.328 378 191 9 28 390 7 372 4.80e-96 291
MsG0380017195.01.T01 MTR_4g121590 41.534 378 194 9 28 390 7 372 1.76e-95 290
MsG0380017195.01.T01 MTR_3g463660 41.344 387 198 13 20 390 2 375 4.81e-87 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017195.01.T01 AT4G24220 71.282 390 110 2 1 390 1 388 0.0 600
MsG0380017195.01.T01 AT4G24220 71.026 390 110 3 1 390 1 387 0.0 593
MsG0380017195.01.T01 AT5G58750 38.287 397 212 16 10 390 6 385 3.34e-74 236
MsG0380017195.01.T01 AT5G58750 38.684 380 208 15 26 390 8 377 3.41e-74 236

Find 132 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGCCGTCCACGTCCTTCT+TGG 0.179014 3:+93206517 MsG0380017195.01.T01:CDS
TGATTGCAGAGCAACATATT+TGG 0.240104 3:+93207096 MsG0380017195.01.T01:CDS
CCAATTGATAAGCGAATTCT+TGG 0.244988 3:-93207447 None:intergenic
CATAGACCACTTCTCATCTT+TGG 0.251994 3:+93206933 MsG0380017195.01.T01:CDS
CAATTTGGGATTGAGGAGTA+TGG 0.252856 3:+93207212 MsG0380017195.01.T01:CDS
CGCTTATCAATTGGATTGAT+AGG 0.266346 3:+93207456 MsG0380017195.01.T01:CDS
TATTACTTTGCAGAAGAAAC+TGG 0.333028 3:+93206359 MsG0380017195.01.T01:intron
GGTGTTCCGTTGAGATTTCC+AGG 0.337111 3:+93207026 MsG0380017195.01.T01:CDS
GCTACGTTCTGGAAGCTTCT+TGG 0.337550 3:-93206396 None:intergenic
TGGTGGTGGTCTGGTGCTAT+TGG 0.337632 3:+93206262 MsG0380017195.01.T01:CDS
CCAAGAATTCGCTTATCAAT+TGG 0.337633 3:+93207447 MsG0380017195.01.T01:CDS
CATAATGCTTGCCGCCGGTT+TGG 0.342780 3:-93206758 None:intergenic
TGGTTTGCAGATGCTTGTTT+TGG 0.344545 3:+93207359 MsG0380017195.01.T01:CDS
ATCGGTGAGGACGGAGAGTT+TGG 0.345552 3:-93206601 None:intergenic
AGTTTGGTGGTGGCGTCCTT+TGG 0.347663 3:-93206585 None:intergenic
GTTGGGCCCTTTGAGTCTTT+CGG 0.351274 3:+93206780 MsG0380017195.01.T01:CDS
TGTGAAGGAGAATGGGTTGC+AGG 0.353550 3:+93207307 MsG0380017195.01.T01:CDS
AGGTTATCGCGGAACAATTT+GGG 0.354578 3:+93207198 MsG0380017195.01.T01:CDS
TGGCGGAGATTGGGAGCGTT+TGG 0.360822 3:-93206726 None:intergenic
GATTGCAGAGCAACATATTT+GGG 0.360846 3:+93207097 MsG0380017195.01.T01:CDS
ATGATGTTCATCATACTATA+AGG 0.367614 3:-93206963 None:intergenic
AAGGTTATCGCGGAACAATT+TGG 0.372868 3:+93207197 MsG0380017195.01.T01:CDS
AACGCTTCATTCTTAGCATA+AGG 0.373808 3:-93207131 None:intergenic
TACTAATAATGTTGTTGTAC+TGG 0.376077 3:+93207678 MsG0380017195.01.T01:three_prime_UTR
GCTTTAGTCGTTGGCGTAAC+CGG 0.384069 3:+93206417 MsG0380017195.01.T01:CDS
GGCGGTAGATGGAAGGTTTA+CGG 0.384626 3:+93206489 MsG0380017195.01.T01:CDS
GATTGAGACATGGCGGAGAT+TGG 0.388179 3:-93206736 None:intergenic
CACACGTCTTCTACGTCTGC+TGG 0.394964 3:+93206628 MsG0380017195.01.T01:CDS
TGAAGGATAAGGGTCCTGTT+TGG 0.400714 3:+93207276 MsG0380017195.01.T01:CDS
GAGATAAGAAAGTGACAAGT+AGG 0.402102 3:-93206201 None:intergenic
CAGACACACCAGGCGGTAGA+TGG 0.403455 3:+93206478 MsG0380017195.01.T01:CDS
TTAGTTCCATTACATTAGAA+TGG 0.419247 3:+93207746 MsG0380017195.01.T01:three_prime_UTR
GGCGGAGATTGGGAGCGTTT+GGG 0.419575 3:-93206725 None:intergenic
TAGTTCCATTACATTAGAAT+GGG 0.423923 3:+93207747 MsG0380017195.01.T01:three_prime_UTR
CACAGAGGATATGCCACGTT+TGG 0.426758 3:+93206830 MsG0380017195.01.T01:CDS
CGCGGAACAATTTGGGATTG+AGG 0.428110 3:+93207205 MsG0380017195.01.T01:CDS
TTCCAGGGACTAAGTTAGCT+TGG 0.433800 3:+93207042 MsG0380017195.01.T01:CDS
TCCAGGGACTAAGTTAGCTT+GGG 0.436133 3:+93207043 MsG0380017195.01.T01:CDS
TTCACAATCTCATCCCAAAC+AGG 0.445292 3:-93207290 None:intergenic
AGGTCCTCGTTTGAAGTTAA+CGG 0.445908 3:+93207247 MsG0380017195.01.T01:CDS
ACTATGAGCTGGTGGTGGTC+TGG 0.446263 3:+93206253 MsG0380017195.01.T01:exon
CCTCTGTGTATGGTGGTTCA+TGG 0.459034 3:-93206815 None:intergenic
ATTGAGACATGGCGGAGATT+GGG 0.460027 3:-93206735 None:intergenic
AACGGAGTTGATGAAGGATA+AGG 0.464931 3:+93207265 MsG0380017195.01.T01:CDS
GAAGGATAAGGGTCCTGTTT+GGG 0.466201 3:+93207277 MsG0380017195.01.T01:CDS
CGCCGGTTTGGATTGAGACA+TGG 0.468188 3:-93206746 None:intergenic
ACCGGCGGCAAGCATTATGT+TGG 0.479546 3:+93206762 MsG0380017195.01.T01:CDS
TGAACCCCATTCTAATGTAA+TGG 0.485889 3:-93207752 None:intergenic
CGCTGCAATTTGTAAGCATG+AGG 0.489083 3:+93207004 MsG0380017195.01.T01:CDS
CGCCATGTCTCAATCCAAAC+CGG 0.492347 3:+93206744 MsG0380017195.01.T01:CDS
GAAGTTAACGGAGTTGATGA+AGG 0.493606 3:+93207259 MsG0380017195.01.T01:CDS
CTCAGCAACTTCTTCCAGCT+TGG 0.494428 3:-93207333 None:intergenic
TATAGTATGATGAACATCAT+TGG 0.500601 3:+93206966 MsG0380017195.01.T01:CDS
TGGTGCTATTGGTGCTGCCA+AGG 0.502349 3:+93206273 MsG0380017195.01.T01:CDS
CCGGCGGCAAGCATTATGTT+GGG 0.504932 3:+93206763 MsG0380017195.01.T01:CDS
AATTTGGGATTGAGGAGTAT+GGG 0.506197 3:+93207213 MsG0380017195.01.T01:CDS
GATGAGATTGTGAAGGAGAA+TGG 0.506930 3:+93207299 MsG0380017195.01.T01:CDS
GAGGCTGTTGCCGACGATGC+CGG 0.508074 3:-93206436 None:intergenic
CCAAGAAGGACGTGGACGGC+GGG 0.508512 3:-93206517 None:intergenic
AGGCACAATCTTGTAAGCTC+TGG 0.514865 3:-93207480 None:intergenic
TGGGTTGCAGGTTACCAAGC+TGG 0.516759 3:+93207319 MsG0380017195.01.T01:CDS
CAGAACGTAGCTTTAGTCGT+TGG 0.524219 3:+93206408 MsG0380017195.01.T01:CDS
AATTGCAGCGTAAACACAAA+TGG 0.531807 3:-93206991 None:intergenic
TCCCAAGCTAACTTAGTCCC+TGG 0.532880 3:-93207044 None:intergenic
GAAGAAACAGGGAAGAAAGA+AGG 0.534377 3:+93206894 MsG0380017195.01.T01:CDS
GATCTTGCCGAAAGACTCAA+AGG 0.535462 3:-93206787 None:intergenic
ATGAACAAGTCGAAAGAGCA+TGG 0.537267 3:+93207404 MsG0380017195.01.T01:CDS
TAGGTGGAAGCAATTGTGGA+AGG 0.541878 3:+93207178 MsG0380017195.01.T01:CDS
TAATTTCTATTATACACTTG+AGG 0.542861 3:+93206860 MsG0380017195.01.T01:CDS
ACGGAGTTGATGAAGGATAA+GGG 0.545911 3:+93207266 MsG0380017195.01.T01:CDS
CCCAACATAATGCTTGCCGC+CGG 0.546768 3:-93206763 None:intergenic
ACACGTCTTCTACGTCTGCT+GGG 0.548690 3:+93206629 MsG0380017195.01.T01:CDS
TTGGATCGCTGATGTCGCAT+TGG 0.551944 3:-93206566 None:intergenic
TCGCATTGGACGTATTCCAC+AGG 0.552292 3:-93206552 None:intergenic
CGTGGCATATCCTCTGTGTA+TGG 0.552492 3:-93206825 None:intergenic
ATGAGATTGTGAAGGAGAAT+GGG 0.554010 3:+93207300 MsG0380017195.01.T01:CDS
TCTGAATCTCAACTATGAGC+TGG 0.557759 3:+93206242 MsG0380017195.01.T01:exon
GCAACATATTTGGGCTGCAG+TGG 0.558473 3:+93207106 MsG0380017195.01.T01:CDS
AGCTTGGGAGAATTACTACA+TGG 0.558994 3:+93207058 MsG0380017195.01.T01:CDS
TAAACCTTCCATCTACCGCC+TGG 0.565249 3:-93206486 None:intergenic
TCCAAGAAGGACGTGGACGG+CGG 0.568809 3:-93206518 None:intergenic
ACTAATAATGTTGTTGTACT+GGG 0.569247 3:+93207679 MsG0380017195.01.T01:three_prime_UTR
GTAGAAGACGTGTGTGACAT+CGG 0.569903 3:-93206619 None:intergenic
CAACGACTAAAGCTACGTTC+TGG 0.570536 3:-93206407 None:intergenic
AAAGTAGAACGATACTAAGT+CGG 0.570557 3:-93207528 None:intergenic
GGTGAGGACGGAGAGTTTGG+TGG 0.571288 3:-93206598 None:intergenic
GAGTATGGGTTCGACGAGGA+AGG 0.571764 3:+93207227 MsG0380017195.01.T01:CDS
AGATAAGAAAGTGACAAGTA+GGG 0.573997 3:-93206200 None:intergenic
GAAAATCCAAAGATGAGAAG+TGG 0.581784 3:-93206939 None:intergenic
GGAAGAAAGAAGGTGTGAGT+TGG 0.582552 3:+93206904 MsG0380017195.01.T01:CDS
GGGTGATCTGCGTTCCAAGA+AGG 0.582709 3:-93206531 None:intergenic
GAGGACGGAGAGTTTGGTGG+TGG 0.585930 3:-93206595 None:intergenic
TCTAGAATAAGTAAGATTCG+AGG 0.585976 3:+93207576 MsG0380017195.01.T01:three_prime_UTR
CTAGAATAAGTAAGATTCGA+GGG 0.586889 3:+93207577 MsG0380017195.01.T01:three_prime_UTR
ATGCGACATCAGCGATCCAA+AGG 0.597675 3:+93206569 MsG0380017195.01.T01:CDS
CGCATTGGACGTATTCCACA+GGG 0.599054 3:-93206551 None:intergenic
GAAGCGTTCAACTGTAGCAA+TGG 0.601218 3:+93207146 MsG0380017195.01.T01:CDS
ATCTTGCCGAAAGACTCAAA+GGG 0.602975 3:-93206786 None:intergenic
CCGCCTGGTGTGTCTGCTAG+AGG 0.604279 3:-93206471 None:intergenic
GTTGGCGTAACCGGCATCGT+CGG 0.606475 3:+93206426 MsG0380017195.01.T01:CDS
TCTCAACTATGAGCTGGTGG+TGG 0.607226 3:+93206248 MsG0380017195.01.T01:exon
CGTTCCAAGAAGGACGTGGA+CGG 0.611142 3:-93206521 None:intergenic
CTACCTCTAGCAGACACACC+AGG 0.613410 3:+93206468 MsG0380017195.01.T01:CDS
GTGTTCCGTTGAGATTTCCA+GGG 0.614181 3:+93207027 MsG0380017195.01.T01:CDS
GTGTGTGACATCGGTGAGGA+CGG 0.615222 3:-93206610 None:intergenic
TTAGTCCCTGGAAATCTCAA+CGG 0.621975 3:-93207032 None:intergenic
CACACCAGGCGGTAGATGGA+AGG 0.626092 3:+93206482 MsG0380017195.01.T01:CDS
GCAGAAAATTGTGAAATCAA+CGG 0.627758 3:+93206669 MsG0380017195.01.T01:CDS
TCTGCGTTCCAAGAAGGACG+TGG 0.628447 3:-93206525 None:intergenic
TGAACAAGTCGAAAGAGCAT+GGG 0.628727 3:+93207405 MsG0380017195.01.T01:CDS
AGTTCCATTACATTAGAATG+GGG 0.629086 3:+93207748 MsG0380017195.01.T01:three_prime_UTR
ATTCGATATTCACTCACTCA+AGG 0.633093 3:-93207500 None:intergenic
GAATCTCAACTATGAGCTGG+TGG 0.639383 3:+93206245 MsG0380017195.01.T01:exon
TGGAAGAAGTTGCTGAGTGG+TGG 0.642132 3:+93207339 MsG0380017195.01.T01:CDS
GGCATATCCTCTGTGTATGG+TGG 0.651493 3:-93206822 None:intergenic
GCTGCAATTTGTAAGCATGA+GGG 0.652717 3:+93207005 MsG0380017195.01.T01:CDS
TGGAACTAACTAGATAGCTG+AGG 0.664455 3:-93207732 None:intergenic
GCAATTGTGGAAGGTTATCG+CGG 0.668471 3:+93207187 MsG0380017195.01.T01:CDS
TACTTTGCAGAAGAAACTGG+AGG 0.672832 3:+93206362 MsG0380017195.01.T01:intron
CATGTCTCAATCCAAACCGG+CGG 0.688004 3:+93206747 MsG0380017195.01.T01:CDS
AAATTATGATATTCCAAACG+TGG 0.694186 3:-93206843 None:intergenic
TGTTTGGGATGAGATTGTGA+AGG 0.709911 3:+93207292 MsG0380017195.01.T01:CDS
AACTCCGTTAACTTCAAACG+AGG 0.714416 3:-93207251 None:intergenic
CGGTTTGGATTGAGACATGG+CGG 0.724287 3:-93206743 None:intergenic
AGACGTGTGTGACATCGGTG+AGG 0.730340 3:-93206614 None:intergenic
AGCTGGAAGAAGTTGCTGAG+TGG 0.740024 3:+93207336 MsG0380017195.01.T01:CDS
TTGGAACGCAGATCACCCTG+TGG 0.740880 3:+93206536 MsG0380017195.01.T01:CDS
TGAGGAGTATGGGTTCGACG+AGG 0.754785 3:+93207223 MsG0380017195.01.T01:CDS
CGTTTGGGATAACTGCAGTG+AGG 0.764252 3:-93206710 None:intergenic
CCATGAACCACCATACACAG+AGG 0.767776 3:+93206815 MsG0380017195.01.T01:CDS
CCTCTAGCAGACACACCAGG+CGG 0.780203 3:+93206471 MsG0380017195.01.T01:CDS
CTAGAGGTAGAATTTCAGCG+AGG 0.802486 3:-93206455 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTCTATTATACACTTG+AGG + Chr3:93206860-93206879 MsG0380017195.01.T01:CDS 20.0%
! AAATTATGATATTCCAAACG+TGG - Chr3:93206846-93206865 None:intergenic 25.0%
! ACTAATAATGTTGTTGTACT+GGG + Chr3:93207679-93207698 MsG0380017195.01.T01:three_prime_UTR 25.0%
! ATGATGTTCATCATACTATA+AGG - Chr3:93206966-93206985 None:intergenic 25.0%
! GAATGATTGAAACTAGAAAA+AGG - Chr3:93206324-93206343 None:intergenic 25.0%
! TACTAATAATGTTGTTGTAC+TGG + Chr3:93207678-93207697 MsG0380017195.01.T01:three_prime_UTR 25.0%
! TAGTTCCATTACATTAGAAT+GGG + Chr3:93207747-93207766 MsG0380017195.01.T01:three_prime_UTR 25.0%
! TATAGTATGATGAACATCAT+TGG + Chr3:93206966-93206985 MsG0380017195.01.T01:CDS 25.0%
! TTAGTTCCATTACATTAGAA+TGG + Chr3:93207746-93207765 MsG0380017195.01.T01:three_prime_UTR 25.0%
!!! ATGTTTTGTTTGAAGAAACA+GGG + Chr3:93206883-93206902 MsG0380017195.01.T01:CDS 25.0%
AAACTAGAAAAAGGAAGAAG+GGG - Chr3:93206315-93206334 None:intergenic 30.0%
AAAGTAGAACGATACTAAGT+CGG - Chr3:93207531-93207550 None:intergenic 30.0%
AGATAAGAAAGTGACAAGTA+GGG - Chr3:93206203-93206222 None:intergenic 30.0%
AGTTCCATTACATTAGAATG+GGG + Chr3:93207748-93207767 MsG0380017195.01.T01:three_prime_UTR 30.0%
CTAGAATAAGTAAGATTCGA+GGG + Chr3:93207577-93207596 MsG0380017195.01.T01:three_prime_UTR 30.0%
GAAACTAGAAAAAGGAAGAA+GGG - Chr3:93206316-93206335 None:intergenic 30.0%
GAAATTGAGATAGTATACCT+TGG - Chr3:93206293-93206312 None:intergenic 30.0%
GCAGAAAATTGTGAAATCAA+CGG + Chr3:93206669-93206688 MsG0380017195.01.T01:CDS 30.0%
TATTACTTTGCAGAAGAAAC+TGG + Chr3:93206359-93206378 MsG0380017195.01.T01:intron 30.0%
TGAAACTAGAAAAAGGAAGA+AGG - Chr3:93206317-93206336 None:intergenic 30.0%
! GATTTCACAATTTTCTGCTT+CGG - Chr3:93206667-93206686 None:intergenic 30.0%
! TCTAGAATAAGTAAGATTCG+AGG + Chr3:93207576-93207595 MsG0380017195.01.T01:three_prime_UTR 30.0%
!!! GATGTTTTGTTTGAAGAAAC+AGG + Chr3:93206882-93206901 MsG0380017195.01.T01:CDS 30.0%
AACGCTTCATTCTTAGCATA+AGG - Chr3:93207134-93207153 None:intergenic 35.0%
AATTGCAGCGTAAACACAAA+TGG - Chr3:93206994-93207013 None:intergenic 35.0%
ATGAGATTGTGAAGGAGAAT+GGG + Chr3:93207300-93207319 MsG0380017195.01.T01:CDS 35.0%
ATTCGATATTCACTCACTCA+AGG - Chr3:93207503-93207522 None:intergenic 35.0%
CCAAGAATTCGCTTATCAAT+TGG + Chr3:93207447-93207466 MsG0380017195.01.T01:CDS 35.0%
CCAATTGATAAGCGAATTCT+TGG - Chr3:93207450-93207469 None:intergenic 35.0%
CGCTTATCAATTGGATTGAT+AGG + Chr3:93207456-93207475 MsG0380017195.01.T01:CDS 35.0%
GAAAATCCAAAGATGAGAAG+TGG - Chr3:93206942-93206961 None:intergenic 35.0%
GAGATAAGAAAGTGACAAGT+AGG - Chr3:93206204-93206223 None:intergenic 35.0%
GATTGCAGAGCAACATATTT+GGG + Chr3:93207097-93207116 MsG0380017195.01.T01:CDS 35.0%
TGAACCCCATTCTAATGTAA+TGG - Chr3:93207755-93207774 None:intergenic 35.0%
TGATTGCAGAGCAACATATT+TGG + Chr3:93207096-93207115 MsG0380017195.01.T01:CDS 35.0%
! AATTTGGGATTGAGGAGTAT+GGG + Chr3:93207213-93207232 MsG0380017195.01.T01:CDS 35.0%
!! GTAGCAATGGTGATGTTTTT+AGG + Chr3:93207159-93207178 MsG0380017195.01.T01:CDS 35.0%
!!! ATGCTTGTTTTGGAGGTAAT+GGG + Chr3:93207369-93207388 MsG0380017195.01.T01:CDS 35.0%
!!! TTTTGGAGGTAATGGGTTTA+CGG + Chr3:93207376-93207395 MsG0380017195.01.T01:CDS 35.0%
!!! TTTTTAGGTGGAAGCAATTG+TGG + Chr3:93207174-93207193 MsG0380017195.01.T01:CDS 35.0%
AACTCCGTTAACTTCAAACG+AGG - Chr3:93207254-93207273 None:intergenic 40.0%
AAGGTTATCGCGGAACAATT+TGG + Chr3:93207197-93207216 MsG0380017195.01.T01:CDS 40.0%
AGCTTGGGAGAATTACTACA+TGG + Chr3:93207058-93207077 MsG0380017195.01.T01:CDS 40.0%
AGGTTATCGCGGAACAATTT+GGG + Chr3:93207198-93207217 MsG0380017195.01.T01:CDS 40.0%
ATCTTGCCGAAAGACTCAAA+GGG - Chr3:93206789-93206808 None:intergenic 40.0%
ATGAACAAGTCGAAAGAGCA+TGG + Chr3:93207404-93207423 MsG0380017195.01.T01:CDS 40.0%
CATAGACCACTTCTCATCTT+TGG + Chr3:93206933-93206952 MsG0380017195.01.T01:CDS 40.0%
GAAGAAACAGGGAAGAAAGA+AGG + Chr3:93206894-93206913 MsG0380017195.01.T01:CDS 40.0%
GATGAGATTGTGAAGGAGAA+TGG + Chr3:93207299-93207318 MsG0380017195.01.T01:CDS 40.0%
GCTGCAATTTGTAAGCATGA+GGG + Chr3:93207005-93207024 MsG0380017195.01.T01:CDS 40.0%
TACTTTGCAGAAGAAACTGG+AGG + Chr3:93206362-93206381 MsG0380017195.01.T01:intron 40.0%
TCTGAATCTCAACTATGAGC+TGG + Chr3:93206242-93206261 MsG0380017195.01.T01:exon 40.0%
TGGAACTAACTAGATAGCTG+AGG - Chr3:93207735-93207754 None:intergenic 40.0%
TTAGTCCCTGGAAATCTCAA+CGG - Chr3:93207035-93207054 None:intergenic 40.0%
TTCACAATCTCATCCCAAAC+AGG - Chr3:93207293-93207312 None:intergenic 40.0%
! AGGTCCTCGTTTGAAGTTAA+CGG + Chr3:93207247-93207266 MsG0380017195.01.T01:CDS 40.0%
! CAATTTGGGATTGAGGAGTA+TGG + Chr3:93207212-93207231 MsG0380017195.01.T01:CDS 40.0%
! TCACAATTTTCTGCTTCGGT+GGG - Chr3:93206663-93206682 None:intergenic 40.0%
! TGAACAAGTCGAAAGAGCAT+GGG + Chr3:93207405-93207424 MsG0380017195.01.T01:CDS 40.0%
! TGTTTGGGATGAGATTGTGA+AGG + Chr3:93207292-93207311 MsG0380017195.01.T01:CDS 40.0%
! TTCACAATTTTCTGCTTCGG+TGG - Chr3:93206664-93206683 None:intergenic 40.0%
!! AACGGAGTTGATGAAGGATA+AGG + Chr3:93207265-93207284 MsG0380017195.01.T01:CDS 40.0%
!! ACGGAGTTGATGAAGGATAA+GGG + Chr3:93207266-93207285 MsG0380017195.01.T01:CDS 40.0%
!! GAAGTTAACGGAGTTGATGA+AGG + Chr3:93207259-93207278 MsG0380017195.01.T01:CDS 40.0%
!! TCGAAAGAGCATGGGTTTTT+GGG + Chr3:93207413-93207432 MsG0380017195.01.T01:CDS 40.0%
!! TGGTTTGCAGATGCTTGTTT+TGG + Chr3:93207359-93207378 MsG0380017195.01.T01:CDS 40.0%
!!! GATGCTTGTTTTGGAGGTAA+TGG + Chr3:93207368-93207387 MsG0380017195.01.T01:CDS 40.0%
!!! GCAATGGTGATGTTTTTAGG+TGG + Chr3:93207162-93207181 MsG0380017195.01.T01:CDS 40.0%
!!! TTTGCAGATGCTTGTTTTGG+AGG + Chr3:93207362-93207381 MsG0380017195.01.T01:CDS 40.0%
AGGCACAATCTTGTAAGCTC+TGG - Chr3:93207483-93207502 None:intergenic 45.0%
CAACGACTAAAGCTACGTTC+TGG - Chr3:93206410-93206429 None:intergenic 45.0%
CGCTGCAATTTGTAAGCATG+AGG + Chr3:93207004-93207023 MsG0380017195.01.T01:CDS 45.0%
CTAGAGGTAGAATTTCAGCG+AGG - Chr3:93206458-93206477 None:intergenic 45.0%
GAAGGATAAGGGTCCTGTTT+GGG + Chr3:93207277-93207296 MsG0380017195.01.T01:CDS 45.0%
GAATCTCAACTATGAGCTGG+TGG + Chr3:93206245-93206264 MsG0380017195.01.T01:exon 45.0%
GATCTTGCCGAAAGACTCAA+AGG - Chr3:93206790-93206809 None:intergenic 45.0%
GCAATTGTGGAAGGTTATCG+CGG + Chr3:93207187-93207206 MsG0380017195.01.T01:CDS 45.0%
GTAGAAGACGTGTGTGACAT+CGG - Chr3:93206622-93206641 None:intergenic 45.0%
GTGTTCCGTTGAGATTTCCA+GGG + Chr3:93207027-93207046 MsG0380017195.01.T01:CDS 45.0%
TAGGTGGAAGCAATTGTGGA+AGG + Chr3:93207178-93207197 MsG0380017195.01.T01:CDS 45.0%
TGAAGGATAAGGGTCCTGTT+TGG + Chr3:93207276-93207295 MsG0380017195.01.T01:CDS 45.0%
TTCCAGGGACTAAGTTAGCT+TGG + Chr3:93207042-93207061 MsG0380017195.01.T01:CDS 45.0%
! AATTTTCTGCTTCGGTGGGA+CGG - Chr3:93206659-93206678 None:intergenic 45.0%
! ATTGAGACATGGCGGAGATT+GGG - Chr3:93206738-93206757 None:intergenic 45.0%
! GAAGCGTTCAACTGTAGCAA+TGG + Chr3:93207146-93207165 MsG0380017195.01.T01:CDS 45.0%
! GGAAGAAAGAAGGTGTGAGT+TGG + Chr3:93206904-93206923 MsG0380017195.01.T01:CDS 45.0%
! TCCAGGGACTAAGTTAGCTT+GGG + Chr3:93207043-93207062 MsG0380017195.01.T01:CDS 45.0%
!! CAGAACGTAGCTTTAGTCGT+TGG + Chr3:93206408-93206427 MsG0380017195.01.T01:CDS 45.0%
!! GTCGAAAGAGCATGGGTTTT+TGG + Chr3:93207412-93207431 MsG0380017195.01.T01:CDS 45.0%
!!! AGCATGGGTTTTTGGGATTC+AGG + Chr3:93207420-93207439 MsG0380017195.01.T01:CDS 45.0%
!! TTGTAAAAAATAATAATAAT+AGG - Chr3:93207787-93207806 None:intergenic 5.0%
ACACGTCTTCTACGTCTGCT+GGG + Chr3:93206629-93206648 MsG0380017195.01.T01:CDS 50.0%
AGCTGGAAGAAGTTGCTGAG+TGG + Chr3:93207336-93207355 MsG0380017195.01.T01:CDS 50.0%
ATGCGACATCAGCGATCCAA+AGG + Chr3:93206569-93206588 MsG0380017195.01.T01:CDS 50.0%
CACAGAGGATATGCCACGTT+TGG + Chr3:93206830-93206849 MsG0380017195.01.T01:CDS 50.0%
CATGTCTCAATCCAAACCGG+CGG + Chr3:93206747-93206766 MsG0380017195.01.T01:CDS 50.0%
CCATGAACCACCATACACAG+AGG + Chr3:93206815-93206834 MsG0380017195.01.T01:CDS 50.0%
CCTCTGTGTATGGTGGTTCA+TGG - Chr3:93206818-93206837 None:intergenic 50.0%
CGCATTGGACGTATTCCACA+GGG - Chr3:93206554-93206573 None:intergenic 50.0%
CGCCATGTCTCAATCCAAAC+CGG + Chr3:93206744-93206763 MsG0380017195.01.T01:CDS 50.0%
CGTGGCATATCCTCTGTGTA+TGG - Chr3:93206828-93206847 None:intergenic 50.0%
CTCAGCAACTTCTTCCAGCT+TGG - Chr3:93207336-93207355 None:intergenic 50.0%
GCAACATATTTGGGCTGCAG+TGG + Chr3:93207106-93207125 MsG0380017195.01.T01:CDS 50.0%
GCTTTAGTCGTTGGCGTAAC+CGG + Chr3:93206417-93206436 MsG0380017195.01.T01:CDS 50.0%
GGCATATCCTCTGTGTATGG+TGG - Chr3:93206825-93206844 None:intergenic 50.0%
GGCGGTAGATGGAAGGTTTA+CGG + Chr3:93206489-93206508 MsG0380017195.01.T01:CDS 50.0%
GGTGTTCCGTTGAGATTTCC+AGG + Chr3:93207026-93207045 MsG0380017195.01.T01:CDS 50.0%
GTTGGGCCCTTTGAGTCTTT+CGG + Chr3:93206780-93206799 MsG0380017195.01.T01:CDS 50.0%
TAAACCTTCCATCTACCGCC+TGG - Chr3:93206489-93206508 None:intergenic 50.0%
TCCCAAGCTAACTTAGTCCC+TGG - Chr3:93207047-93207066 None:intergenic 50.0%
TCGCATTGGACGTATTCCAC+AGG - Chr3:93206555-93206574 None:intergenic 50.0%
TCTCAACTATGAGCTGGTGG+TGG + Chr3:93206248-93206267 MsG0380017195.01.T01:exon 50.0%
TGGAAGAAGTTGCTGAGTGG+TGG + Chr3:93207339-93207358 MsG0380017195.01.T01:CDS 50.0%
TTGGATCGCTGATGTCGCAT+TGG - Chr3:93206569-93206588 None:intergenic 50.0%
! CGCGGAACAATTTGGGATTG+AGG + Chr3:93207205-93207224 MsG0380017195.01.T01:CDS 50.0%
! CGGTTTGGATTGAGACATGG+CGG - Chr3:93206746-93206765 None:intergenic 50.0%
! CGTTTGGGATAACTGCAGTG+AGG - Chr3:93206713-93206732 None:intergenic 50.0%
! GATTGAGACATGGCGGAGAT+TGG - Chr3:93206739-93206758 None:intergenic 50.0%
!! GCTACGTTCTGGAAGCTTCT+TGG - Chr3:93206399-93206418 None:intergenic 50.0%
!! TGTGAAGGAGAATGGGTTGC+AGG + Chr3:93207307-93207326 MsG0380017195.01.T01:CDS 50.0%
ACCGGCGGCAAGCATTATGT+TGG + Chr3:93206762-93206781 MsG0380017195.01.T01:CDS 55.0%
AGACGTGTGTGACATCGGTG+AGG - Chr3:93206617-93206636 None:intergenic 55.0%
ATCGGTGAGGACGGAGAGTT+TGG - Chr3:93206604-93206623 None:intergenic 55.0%
CACACGTCTTCTACGTCTGC+TGG + Chr3:93206628-93206647 MsG0380017195.01.T01:CDS 55.0%
CCCAACATAATGCTTGCCGC+CGG - Chr3:93206766-93206785 None:intergenic 55.0%
CCGGCGGCAAGCATTATGTT+GGG + Chr3:93206763-93206782 MsG0380017195.01.T01:CDS 55.0%
CGTTCCAAGAAGGACGTGGA+CGG - Chr3:93206524-93206543 None:intergenic 55.0%
CTACCTCTAGCAGACACACC+AGG + Chr3:93206468-93206487 MsG0380017195.01.T01:CDS 55.0%
GAGTATGGGTTCGACGAGGA+AGG + Chr3:93207227-93207246 MsG0380017195.01.T01:CDS 55.0%
GGGTGATCTGCGTTCCAAGA+AGG - Chr3:93206534-93206553 None:intergenic 55.0%
GTGTGTGACATCGGTGAGGA+CGG - Chr3:93206613-93206632 None:intergenic 55.0%
TCTGCGTTCCAAGAAGGACG+TGG - Chr3:93206528-93206547 None:intergenic 55.0%
TGGGTTGCAGGTTACCAAGC+TGG + Chr3:93207319-93207338 MsG0380017195.01.T01:CDS 55.0%
TTGGAACGCAGATCACCCTG+TGG + Chr3:93206536-93206555 MsG0380017195.01.T01:CDS 55.0%
! CATAATGCTTGCCGCCGGTT+TGG - Chr3:93206761-93206780 None:intergenic 55.0%
! TGAGGAGTATGGGTTCGACG+AGG + Chr3:93207223-93207242 MsG0380017195.01.T01:CDS 55.0%
!! ACTATGAGCTGGTGGTGGTC+TGG + Chr3:93206253-93206272 MsG0380017195.01.T01:exon 55.0%
!! AGTTTGGTGGTGGCGTCCTT+TGG - Chr3:93206588-93206607 None:intergenic 55.0%
!! CGCCGGTTTGGATTGAGACA+TGG - Chr3:93206749-93206768 None:intergenic 55.0%
!! TGGTGCTATTGGTGCTGCCA+AGG + Chr3:93206273-93206292 MsG0380017195.01.T01:CDS 55.0%
!! TGGTGGTGGTCTGGTGCTAT+TGG + Chr3:93206262-93206281 MsG0380017195.01.T01:CDS 55.0%
CACACCAGGCGGTAGATGGA+AGG + Chr3:93206482-93206501 MsG0380017195.01.T01:CDS 60.0%
CAGACACACCAGGCGGTAGA+TGG + Chr3:93206478-93206497 MsG0380017195.01.T01:CDS 60.0%
CCTCTAGCAGACACACCAGG+CGG + Chr3:93206471-93206490 MsG0380017195.01.T01:CDS 60.0%
GGTGAGGACGGAGAGTTTGG+TGG - Chr3:93206601-93206620 None:intergenic 60.0%
GTTGGCGTAACCGGCATCGT+CGG + Chr3:93206426-93206445 MsG0380017195.01.T01:CDS 60.0%
TCCAAGAAGGACGTGGACGG+CGG - Chr3:93206521-93206540 None:intergenic 60.0%
! GAGGACGGAGAGTTTGGTGG+TGG - Chr3:93206598-93206617 None:intergenic 60.0%
!! GGCGGAGATTGGGAGCGTTT+GGG - Chr3:93206728-93206747 None:intergenic 60.0%
!! TGGCGGAGATTGGGAGCGTT+TGG - Chr3:93206729-93206748 None:intergenic 60.0%
CCAAGAAGGACGTGGACGGC+GGG - Chr3:93206520-93206539 None:intergenic 65.0%
CCGCCTGGTGTGTCTGCTAG+AGG - Chr3:93206474-93206493 None:intergenic 65.0%
GAGGCTGTTGCCGACGATGC+CGG - Chr3:93206439-93206458 None:intergenic 65.0%
CCCGCCGTCCACGTCCTTCT+TGG + Chr3:93206517-93206536 MsG0380017195.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 93206169 93207820 93206169 ID=MsG0380017195.01;Name=MsG0380017195.01
Chr3 mRNA 93206169 93207820 93206169 ID=MsG0380017195.01.T01;Parent=MsG0380017195.01;Name=MsG0380017195.01.T01;_AED=0.45;_eAED=0.45;_QI=87|1|1|1|1|1|2|315|390
Chr3 exon 93206169 93206294 93206169 ID=MsG0380017195.01.T01:exon:31048;Parent=MsG0380017195.01.T01
Chr3 exon 93206372 93207820 93206372 ID=MsG0380017195.01.T01:exon:31049;Parent=MsG0380017195.01.T01
Chr3 five_prime_UTR 93206169 93206255 93206169 ID=MsG0380017195.01.T01:five_prime_utr;Parent=MsG0380017195.01.T01
Chr3 CDS 93206256 93206294 93206256 ID=MsG0380017195.01.T01:cds;Parent=MsG0380017195.01.T01
Chr3 CDS 93206372 93207505 93206372 ID=MsG0380017195.01.T01:cds;Parent=MsG0380017195.01.T01
Chr3 three_prime_UTR 93207506 93207820 93207506 ID=MsG0380017195.01.T01:three_prime_utr;Parent=MsG0380017195.01.T01
Gene Sequence

>MsG0380017195.01.T01

ATGAGCTGGTGGTGGTCTGGTGCTATTGGTGCTGCCAAGAAGAAACTGGAGGAAGATGAAGCACCAAGAAGCTTCCAGAACGTAGCTTTAGTCGTTGGCGTAACCGGCATCGTCGGCAACAGCCTCGCTGAAATTCTACCTCTAGCAGACACACCAGGCGGTAGATGGAAGGTTTACGGCGTTGCCCGCCGTCCACGTCCTTCTTGGAACGCAGATCACCCTGTGGAATACGTCCAATGCGACATCAGCGATCCAAAGGACGCCACCACCAAACTCTCCGTCCTCACCGATGTCACACACGTCTTCTACGTCTGCTGGGCTAGCCGTCCCACCGAAGCAGAAAATTGTGAAATCAACGGCGCTATGCTCAAAAACGTCCTCACTGCAGTTATCCCAAACGCTCCCAATCTCCGCCATGTCTCAATCCAAACCGGCGGCAAGCATTATGTTGGGCCCTTTGAGTCTTTCGGCAAGATCAAGTACCATGAACCACCATACACAGAGGATATGCCACGTTTGGAATATCATAATTTCTATTATACACTTGAGGATGTTTTGTTTGAAGAAACAGGGAAGAAAGAAGGTGTGAGTTGGTCTGTTCATAGACCACTTCTCATCTTTGGATTTTCACCTTATAGTATGATGAACATCATTGGCACCATTTGTGTTTACGCTGCAATTTGTAAGCATGAGGGTGTTCCGTTGAGATTTCCAGGGACTAAGTTAGCTTGGGAGAATTACTACATGGCTTCTGATGCAGATTTGATTGCAGAGCAACATATTTGGGCTGCAGTGGATCCTTATGCTAAGAATGAAGCGTTCAACTGTAGCAATGGTGATGTTTTTAGGTGGAAGCAATTGTGGAAGGTTATCGCGGAACAATTTGGGATTGAGGAGTATGGGTTCGACGAGGAAGGTCCTCGTTTGAAGTTAACGGAGTTGATGAAGGATAAGGGTCCTGTTTGGGATGAGATTGTGAAGGAGAATGGGTTGCAGGTTACCAAGCTGGAAGAAGTTGCTGAGTGGTGGTTTGCAGATGCTTGTTTTGGAGGTAATGGGTTTACGGATAGCATGAACAAGTCGAAAGAGCATGGGTTTTTGGGATTCAGGAACACCAAGAATTCGCTTATCAATTGGATTGATAGGACCAGAGCTTACAAGATTGTGCCTTGA

Protein sequence

>MsG0380017195.01.T01

MSWWWSGAIGAAKKKLEEDEAPRSFQNVALVVGVTGIVGNSLAEILPLADTPGGRWKVYGVARRPRPSWNADHPVEYVQCDISDPKDATTKLSVLTDVTHVFYVCWASRPTEAENCEINGAMLKNVLTAVIPNAPNLRHVSIQTGGKHYVGPFESFGKIKYHEPPYTEDMPRLEYHNFYYTLEDVLFEETGKKEGVSWSVHRPLLIFGFSPYSMMNIIGTICVYAAICKHEGVPLRFPGTKLAWENYYMASDADLIAEQHIWAAVDPYAKNEAFNCSNGDVFRWKQLWKVIAEQFGIEEYGFDEEGPRLKLTELMKDKGPVWDEIVKENGLQVTKLEEVAEWWFADACFGGNGFTDSMNKSKEHGFLGFRNTKNSLINWIDRTRAYKIVP*