AlfalfaGEDB | MsG0680032017.01

M. sativa cultivar ZhongmuNo.1 / MsG0680032017.01

KEGG: -
GO: GO:0046872
PFAM: PF00415 PF01363 PF13713

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680032017.01.T01	XP_013451790.1	77.442	993	37	9	1	808	1	991	0	1456

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680032017.01.T01	Q947D2	54.739	939	224	20	1	745	1	932	0	897

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680032017.01.T01	A0A072U9R1	77.442	993	37	9	1	808	1	991	0.0	1456

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048035.01	MsG0680032017.01	0.816051	6.749520e-52	4.732569e-49
MsG0180000089.01	MsG0680032017.01	0.844936	5.552062e-59	9.105359e-56
MsG0180000220.01	MsG0680032017.01	0.800725	1.259577e-48	5.907658e-46
MsG0180000264.01	MsG0680032017.01	0.803716	3.052349e-49	1.544829e-46
MsG0180000394.01	MsG0680032017.01	0.812008	5.260741e-51	3.306237e-48
MsG0180000555.01	MsG0680032017.01	0.815141	1.076398e-51	7.360489e-49
MsG0180000567.01	MsG0680032017.01	0.811301	7.497424e-51	4.623998e-48
MsG0180000585.01	MsG0680032017.01	0.821132	4.750198e-53	3.831892e-50
MsG0180000729.01	MsG0680032017.01	0.829807	4.186687e-55	4.332127e-52
MsG0180000797.01	MsG0680032017.01	0.805238	1.470403e-49	7.739235e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680032017.01.T01	MTR_6g034795	77.442	993	37	9	1	808	1	991	0.0	1456
MsG0680032017.01.T01	MTR_1g099220	61.523	998	191	14	1	807	1	996	0.0	1148
MsG0680032017.01.T01	MTR_7g072410	41.667	924	332	24	1	736	1	905	0.0	598
MsG0680032017.01.T01	MTR_1g042800	40.505	911	316	21	12	725	5	886	0.0	582
MsG0680032017.01.T01	MTR_5g089900	40.612	948	316	23	2	715	24	958	2.36e-180	548
MsG0680032017.01.T01	MTR_4g029410	41.418	705	270	12	134	717	1	683	1.43e-156	484
MsG0680032017.01.T01	MTR_3g064560	32.955	616	304	13	166	713	323	897	8.69e-100	333
MsG0680032017.01.T01	MTR_3g064560	37.135	342	142	6	163	440	262	594	7.16e-59	217
MsG0680032017.01.T01	MTR_0024s0070	32.877	219	120	7	193	404	136	334	1.29e-27	116
MsG0680032017.01.T01	MTR_0024s0070	29.327	208	126	5	256	460	149	338	1.06e-13	74.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680032017.01.T01	AT5G42140	55.836	951	221	15	1	761	1	942	0.0	968
MsG0680032017.01.T01	AT5G42140	55.836	951	221	15	1	761	1	942	0.0	968
MsG0680032017.01.T01	AT1G76950	54.739	939	224	20	1	745	1	932	0.0	897
MsG0680032017.01.T01	AT3G23270	41.268	962	348	22	1	777	1	930	0.0	631
MsG0680032017.01.T01	AT3G23270	40.919	958	348	24	1	777	1	921	0.0	613
MsG0680032017.01.T01	AT4G14368	41.272	928	340	22	1	744	6	912	0.0	602
MsG0680032017.01.T01	AT4G14368	41.183	930	340	22	1	744	6	914	0.0	602
MsG0680032017.01.T01	AT4G14368	41.272	928	340	22	1	744	1	907	0.0	602
MsG0680032017.01.T01	AT4G14368	41.240	919	334	21	12	744	16	914	0.0	602
MsG0680032017.01.T01	AT5G19420	38.396	935	332	21	13	715	20	942	8.12e-160	494

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Find 260 sgRNAs with CRISPR-Local

Find 588 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACATTTGATTCCAG+TGG	0.569784	6:-31998050	None:intergenic
AAAATACAACGTTCGTAGCG+TGG	0.552887	6:+32001563	MsG0680032017.01.T01:three_prime_UTR
AAAGGTTAAATAAGTAGGGG+TGG	0.606954	6:-32001999	None:intergenic
AAATCGTAATCAATAATTGC+AGG	0.433894	6:-31998718	None:intergenic
AAATGGGGATCAGGACTTGA+GGG	0.541211	6:+32000938	MsG0680032017.01.T01:CDS
AAATTGTTTACTTGGGGTGA+TGG	0.453371	6:+31998637	MsG0680032017.01.T01:CDS
AACATAATTACGCAAGAGGA+AGG	0.529106	6:-32001744	None:intergenic
AACATAGGTAAAGTAGAGGA+AGG	0.589559	6:+32001644	MsG0680032017.01.T01:three_prime_UTR
AACCTGGTGTCTATATACAC+TGG	0.668319	6:+32001293	MsG0680032017.01.T01:three_prime_UTR
AACGAAAGACCAGACATTGT+TGG	0.505867	6:-31999659	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGACTCAAGAAGCTA+TGG	+	Chr6:32000152-32000171	MsG0680032017.01.T01:CDS	30.0%
AAAACTACATTTGATTCCAG+TGG	-	Chr6:31998053-31998072	None:intergenic	30.0%
AACTCCGACAACAATTTATA+TGG	-	Chr6:31999974-31999993	None:intergenic	30.0%
AAGATAGAAAATGCCAACTT+TGG	+	Chr6:31999003-31999022	MsG0680032017.01.T01:intron	30.0%
AAGATAGACATTAATTAGGG+CGG	-	Chr6:31996613-31996632	None:intergenic	30.0%
AAGCTAACAATAATAATCGG+AGG	+	Chr6:31999309-31999328	MsG0680032017.01.T01:CDS	30.0%
AATATGCAAGTAAAAGGATC+TGG	+	Chr6:31997846-31997865	MsG0680032017.01.T01:CDS	30.0%
ACCACAAGAAATTTCTTCAA+CGG	-	Chr6:31998896-31998915	None:intergenic	30.0%
ACTACAAAGAATTCTATGCA+TGG	-	Chr6:31997146-31997165	None:intergenic	30.0%
ACTGTAATAGGATACTGTAA+TGG	+	Chr6:31995775-31995794	MsG0680032017.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	31993614	32002122	31993614	ID=MsG0680032017.01;Name=MsG0680032017.01
Chr6	mRNA	31993614	32002122	31993614	ID=MsG0680032017.01.T01;Parent=MsG0680032017.01;Name=MsG0680032017.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|0.37\|0.33\|1\|0.62\|0.77\|9\|828\|815
Chr6	exon	31993614	31993664	31993614	ID=MsG0680032017.01.T01:exon:15684;Parent=MsG0680032017.01.T01
Chr6	exon	31996700	31996786	31996700	ID=MsG0680032017.01.T01:exon:15685;Parent=MsG0680032017.01.T01
Chr6	exon	31997245	31997334	31997245	ID=MsG0680032017.01.T01:exon:15686;Parent=MsG0680032017.01.T01
Chr6	exon	31997678	31998174	31997678	ID=MsG0680032017.01.T01:exon:15687;Parent=MsG0680032017.01.T01
Chr6	exon	31998348	31998963	31998348	ID=MsG0680032017.01.T01:exon:15688;Parent=MsG0680032017.01.T01
Chr6	exon	31999128	31999757	31999128	ID=MsG0680032017.01.T01:exon:15689;Parent=MsG0680032017.01.T01
Chr6	exon	32000096	32000242	32000096	ID=MsG0680032017.01.T01:exon:15690;Parent=MsG0680032017.01.T01
Chr6	exon	32000828	32001361	32000828	ID=MsG0680032017.01.T01:exon:15691;Parent=MsG0680032017.01.T01
Chr6	exon	32001499	32002122	32001499	ID=MsG0680032017.01.T01:exon:15692;Parent=MsG0680032017.01.T01
Chr6	CDS	31993614	31993664	31993614	ID=MsG0680032017.01.T01:cds;Parent=MsG0680032017.01.T01
Chr6	CDS	31996700	31996786	31996700	ID=MsG0680032017.01.T01:cds;Parent=MsG0680032017.01.T01
Chr6	CDS	31997245	31997334	31997245	ID=MsG0680032017.01.T01:cds;Parent=MsG0680032017.01.T01
Chr6	CDS	31997678	31998174	31997678	ID=MsG0680032017.01.T01:cds;Parent=MsG0680032017.01.T01
Chr6	CDS	31998348	31998963	31998348	ID=MsG0680032017.01.T01:cds;Parent=MsG0680032017.01.T01
Chr6	CDS	31999128	31999757	31999128	ID=MsG0680032017.01.T01:cds;Parent=MsG0680032017.01.T01
Chr6	CDS	32000096	32000242	32000096	ID=MsG0680032017.01.T01:cds;Parent=MsG0680032017.01.T01
Chr6	CDS	32000828	32001157	32000828	ID=MsG0680032017.01.T01:cds;Parent=MsG0680032017.01.T01
Chr6	three_prime_UTR	32001158	32001361	32001158	ID=MsG0680032017.01.T01:three_prime_utr;Parent=MsG0680032017.01.T01
Chr6	three_prime_UTR	32001499	32002122	32001499	ID=MsG0680032017.01.T01:three_prime_utr;Parent=MsG0680032017.01.T01

Gene Sequence

>MsG0680032017.01.T01

ATGGCAGATCTTGTTAACTTAGGGAATGCTGCTGATCGTAACATTGAGCAAGCACTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGTAAGGGAAAGCCAAAATTTTGTCCATTTAGACTCTCTCCTGCTGTTTTCCAACGGTACCTGCGTCCTGAAAAGGATTATGTGTCTTTTTCACTTATTTATAATAACGGAAAGCGTCTCTTGATTTGGTTAGATAGCAAAGATTTAACATCCAATAGTCCAAGTGGAAGTTCAGCTAGTGCATCACTAGACATCAGTTCTCCCGACATTTCTGTGAGTCTTCCAAGCACATCACCGAACTCCTATCGGCCTGACAATACCTTGAATTCTGAAAGATCACATGCACGATCAGAGTCAACAAATATGCAAGTAAAAGGATCTGGTACTGATACTGTTCGTGTTAGTGTTTCAAGTGCCACATCTAGTCATGGATCAGCACCAGATGACTACGATGCTCTTGCAGATGTGTATATATGGGGGGAAATTATCTGCGAAAACGTCAAAGTCGGTGCAGATAAAAGTGTCCATCATTTCAGCCCAAGGGCAGATGTTCTTCTCCCGAAACCACTGGAATCAAATGTAGTTTTAGATGTACAACATATAGCATGTGGTGTTAGACATGCTTCGTTAGTCACTAGGCAAGGTGAAGTTTTTACGTGGGGTGAAGAATCAAGGACGTCTTGGCCATGTCATTGGATACCGAAGAGAATTGGAGGTCCGTTAGATGGACTTCAAGTTTCCTTTGTTGCTTGCGGTCCATGGCACACAGCCTTGATTACTTCAACTGGGAAGCTGTTTACATTCGGCGATGGAACTTTCGGTGTCTTGGGACACGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTGGACTCATTATTAGGGTTGAGAACAATAGCCGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATCGCAACACAATCTATTGCTAGTTTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGGCATGGGGACAAGGAGTCACGGCTTAAACCAACTTGCGTGCCTGCAATTATTGATTACGATTTTAAAAAAATTGCTTGTGGGCACAGTTTGACAGTAGGGCTGACTACATCCGGTCGTGTTTTTACCATGGGAAGTACTGTTTACGGTCAGCTCGGGAATCCTCAGTCCGATGGAAAGCTTCCGTCCTTGGTTGGTGATAAGATTGCGTTGGAATCCGTTGAAGAAATTTCTTGTGGTGCATATCATGTGGCTGTTTTAACATCCAAAATGAAGTTTATACTTGGGTGTTCTGCTTGTAGGCAAGCATTTGGTTTCACTCGAAAGCGGCACAATTGTTATAATTGTGGGCTTGTGCACTGCCATTCATGCAGTTCAAAGAAAGCATTAAGAGCGGCACTTGCTCCTAATCCTGACAAGCACTACCGCGTGTGTGATTCTTGTTACGCCAAATTGAGCAAGGTTGCAGAAGCTAACAATAATAATCGGAGGAATGCTTTGCCGCGTCTTTCGGGTGAAAACAAGGACAGGTTAGACAAGTCTGAGCTAAGAGTGTCCAAGGCTCTTATTCCTTCAAACATGGATTTAATAAAGCAGCTAGATAATAAGGCAGCAAAACAAGGAAAGAAATCCGATACATTCTCGCTTGCTCGCAACTCACAGACGCCTTTGCTACAGCTGAAAGATGTTGTCTTTGCCACTGCTGCTGATCTGAGACGAACAACTCCAAGACCGGTTATTGCACCGTCGGGAGTAAGTACTAGATCCGCATCCCCTTTCTCTAGAAGATCAAGCCCTCCTCGTTCAGCTACGCCTATTCCAACAATGTCTGGTCTTTCGTTTTCCAAAAATATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTGAATAAAGAAGTGCAGAAGTTACATGCTCAGGTCGAGAGCCTGAAAAACAAATGTGAACGGCAAGAATTAGAGGTTCAAAGGTCAGCAAAAAAGACTCAAGAAGCTATGGCACTAGCTACCGAGGAGTCTACTAAATGCAAAGCTGCAAAACAAGTTATAAAGTCACTTACGGCACAGCTCAAAGATCTAGCTGAGAAGCTTCCACCTGAAGCTTATGATGCTGATAACATTAGACCAGCTTACCTACCAAATGGTCTCGAGTCGAACGGCATCCACTATCCGGATACAAATGGGGATCAGGACTTGAGGGCGGAATCAATCAGTGGCTCAAGTTTGGCCTCCATAGGACTTGAATCCTCTCTGTTCAACAGAACAGCCCGTGATTTGCCTGGAGCCTATGGAACTAATCTCCACCAGCAAATCCGGGGCGTCGTAACCTCTAACGGGACCAGTAATCATCCAGATGTGAAATTGCCGAGTGGGCGGTGTGATTCAGTCAAGCAGTAG

Protein sequence

>MsG0680032017.01.T01

MADLVNLGNAADRNIEQALIALKKGAQLLKYGRKGKPKFCPFRLSPAVFQRYLRPEKDYVSFSLIYNNGKRLLIWLDSKDLTSNSPSGSSASASLDISSPDISVSLPSTSPNSYRPDNTLNSERSHARSESTNMQVKGSGTDTVRVSVSSATSSHGSAPDDYDALADVYIWGEIICENVKVGADKSVHHFSPRADVLLPKPLESNVVLDVQHIACGVRHASLVTRQGEVFTWGEESRTSWPCHWIPKRIGGPLDGLQVSFVACGPWHTALITSTGKLFTFGDGTFGVLGHGDRENVSYPREVDSLLGLRTIAVACGVWHTAAVVEVIATQSIASLSSGKLFTWGDGDKNRLGHGDKESRLKPTCVPAIIDYDFKKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPSLVGDKIALESVEEISCGAYHVAVLTSKMKFILGCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPDKHYRVCDSCYAKLSKVAEANNNNRRNALPRLSGENKDRLDKSELRVSKALIPSNMDLIKQLDNKAAKQGKKSDTFSLARNSQTPLLQLKDVVFATAADLRRTTPRPVIAPSGVSTRSASPFSRRSSPPRSATPIPTMSGLSFSKNIADSLKKTNELLNKEVQKLHAQVESLKNKCERQELEVQRSAKKTQEAMALATEESTKCKAAKQVIKSLTAQLKDLAEKLPPEAYDADNIRPAYLPNGLESNGIHYPDTNGDQDLRAESISGSSLASIGLESSLFNRTARDLPGAYGTNLHQQIRGVVTSNGTSNHPDVKLPSGRCDSVKQ*