AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019466.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019466.01.T01 MTR_5g083890 64.013 314 100 4 13 322 1 305 7.34e-121 357
MsG0480019466.01.T01 MTR_7g075820 56.329 316 122 5 13 323 1 305 3.97e-102 305
MsG0480019466.01.T01 MTR_1g107385 53.548 310 130 4 16 322 30 328 9.33e-94 285
MsG0480019466.01.T01 MTR_2g007450 44.892 323 151 6 18 322 16 329 2.40e-78 246
MsG0480019466.01.T01 MTR_2g007400 44.839 310 152 6 18 323 12 306 6.03e-72 229
MsG0480019466.01.T01 MTR_2g005990 44.753 324 150 8 13 329 1 302 2.14e-68 219
MsG0480019466.01.T01 MTR_3g099830 40.836 311 137 5 18 325 12 278 7.33e-65 209
MsG0480019466.01.T01 MTR_2g007500 42.415 323 140 8 10 322 6 292 1.66e-64 207
MsG0480019466.01.T01 MTR_4g098590 40.717 307 164 5 20 323 1 292 1.65e-61 201
MsG0480019466.01.T01 MTR_2g008320 39.117 317 164 7 11 322 45 337 2.20e-61 202
MsG0480019466.01.T01 MTR_2g008310 40.777 309 152 5 18 322 2 283 3.62e-61 200
MsG0480019466.01.T01 MTR_3g107100 40.705 312 157 8 18 325 11 298 4.57e-60 198
MsG0480019466.01.T01 MTR_2g007360 41.562 320 113 9 18 323 12 271 4.50e-59 194
MsG0480019466.01.T01 MTR_1g053025 39.937 318 158 9 18 322 2 299 5.82e-59 194
MsG0480019466.01.T01 MTR_3g107160 39.677 310 160 10 17 322 9 295 1.37e-52 178
MsG0480019466.01.T01 MTR_3g026920 39.385 325 152 8 18 321 19 319 4.38e-51 174
MsG0480019466.01.T01 MTR_3g107120 37.615 327 162 9 10 320 1 301 2.99e-49 169
MsG0480019466.01.T01 MTR_7g007340 35.577 312 138 7 18 325 13 265 3.55e-43 152
MsG0480019466.01.T01 MTR_7g083740 35.873 315 151 7 9 322 8 272 5.04e-42 150
MsG0480019466.01.T01 MTR_1g041245 33.127 323 173 9 15 327 8 297 2.35e-38 140
MsG0480019466.01.T01 MTR_7g007080 34.295 312 175 10 17 323 3 289 2.70e-38 140
MsG0480019466.01.T01 MTR_7g075800 32.727 330 187 10 15 324 6 320 4.33e-36 138
MsG0480019466.01.T01 MTR_7g007370 42.775 173 82 4 154 322 92 251 2.54e-30 118
MsG0480019466.01.T01 MTR_7g056433 33.333 318 171 11 16 322 10 297 6.18e-30 117
MsG0480019466.01.T01 MTR_7g032380 31.707 328 149 11 15 330 8 272 2.05e-29 115
MsG0480019466.01.T01 MTR_2g007530 42.391 184 79 4 18 181 19 195 6.08e-29 114
MsG0480019466.01.T01 MTR_1089s0010 31.290 310 166 8 18 316 8 281 5.92e-28 112
MsG0480019466.01.T01 MTR_3g107140 37.968 187 86 5 48 225 22 187 1.58e-27 107
MsG0480019466.01.T01 MTR_7g115270 31.034 319 192 10 15 322 9 310 2.94e-27 110
MsG0480019466.01.T01 MTR_5g058100 31.746 315 172 12 14 316 5 288 1.08e-26 108
MsG0480019466.01.T01 MTR_5g073420 32.372 312 162 12 18 318 11 284 1.24e-26 108
MsG0480019466.01.T01 MTR_6g040270 30.921 304 173 8 20 316 10 283 2.31e-26 107
MsG0480019466.01.T01 MTR_6g011460 32.468 308 168 11 18 316 46 322 2.85e-26 108
MsG0480019466.01.T01 MTR_3g108150 30.556 324 174 11 15 324 10 296 5.19e-25 104
MsG0480019466.01.T01 MTR_7g026500 31.975 319 174 13 15 318 11 301 8.66e-25 103
MsG0480019466.01.T01 MTR_5g045170 29.912 341 167 14 13 322 1 300 3.80e-24 102
MsG0480019466.01.T01 MTR_1g085120 30.503 318 184 9 18 324 179 470 4.49e-24 102
MsG0480019466.01.T01 MTR_7g056447 35.238 210 110 6 10 218 1 185 6.92e-24 99.8
MsG0480019466.01.T01 MTR_5g007410 29.102 323 184 11 20 326 28 321 8.57e-24 101
MsG0480019466.01.T01 MTR_3g105060 27.244 312 194 6 8 317 4 284 9.91e-24 100
MsG0480019466.01.T01 MTR_6g029350 45.082 122 56 3 209 328 1 113 1.70e-23 97.4
MsG0480019466.01.T01 MTR_1g085120 30.380 316 183 9 18 322 92 381 2.18e-23 100
MsG0480019466.01.T01 MTR_8g085430 35.714 224 109 8 13 226 6 204 2.44e-23 99.0
MsG0480019466.01.T01 MTR_1g085120 30.380 316 183 9 18 322 167 456 3.62e-23 100
MsG0480019466.01.T01 MTR_4g039440 31.068 309 174 12 18 316 34 313 4.04e-23 99.4
MsG0480019466.01.T01 MTR_7g032370 29.450 309 162 11 33 330 5 268 4.39e-23 98.6
MsG0480019466.01.T01 MTR_3g036250 30.530 321 161 12 18 323 5 278 6.06e-23 98.2
MsG0480019466.01.T01 MTR_7g055943 30.351 313 175 10 16 316 38 319 8.41e-23 98.6
MsG0480019466.01.T01 MTR_7g098570 31.776 321 156 12 18 318 20 297 1.13e-22 98.6
MsG0480019466.01.T01 MTR_5g073340 30.435 322 160 11 12 322 2 270 2.52e-22 95.5
MsG0480019466.01.T01 MTR_1g108820 27.640 322 195 6 14 323 4 299 3.72e-22 95.9
MsG0480019466.01.T01 MTR_5g045510 29.795 292 158 12 18 298 12 267 4.81e-22 95.9
MsG0480019466.01.T01 MTR_7g034115 34.969 326 164 13 15 328 8 297 8.10e-22 95.1
MsG0480019466.01.T01 MTR_3g040700 28.931 318 176 11 18 326 43 319 1.16e-21 95.5
MsG0480019466.01.T01 MTR_1g108820 27.329 322 196 6 14 323 4 299 1.26e-21 94.7
MsG0480019466.01.T01 MTR_7g088260 31.366 322 163 13 14 318 87 367 1.34e-21 95.5
MsG0480019466.01.T01 MTR_7g098510 30.864 324 159 14 18 320 18 297 1.44e-21 94.7
MsG0480019466.01.T01 MTR_2g007550 29.882 338 116 13 11 322 7 249 5.70e-21 92.4
MsG0480019466.01.T01 MTR_7g056287 29.795 292 165 12 18 304 3 259 9.28e-21 92.0
MsG0480019466.01.T01 MTR_5g073370 28.846 312 183 10 18 320 5 286 1.08e-20 92.0
MsG0480019466.01.T01 MTR_3g095600 31.061 264 122 9 18 275 4 213 1.51e-20 90.5
MsG0480019466.01.T01 MTR_3g467400 30.453 243 156 6 18 260 3 232 2.21e-20 90.9
MsG0480019466.01.T01 MTR_6g045333 29.091 330 182 14 11 320 54 351 2.26e-20 91.7
MsG0480019466.01.T01 MTR_2g036470 28.963 328 188 11 11 323 7 304 2.71e-20 91.3
MsG0480019466.01.T01 MTR_7g033915 30.435 322 158 15 15 323 8 276 4.11e-20 90.1
MsG0480019466.01.T01 MTR_7g056277 29.795 292 165 12 18 304 259 515 5.58e-20 91.3
MsG0480019466.01.T01 MTR_7g060470 27.778 324 180 11 18 317 3 296 7.94e-20 89.7
MsG0480019466.01.T01 MTR_5g058000 31.392 309 165 13 18 316 8 279 1.17e-19 89.0
MsG0480019466.01.T01 MTR_6g022360 30.097 309 165 10 18 316 43 310 3.82e-19 87.8
MsG0480019466.01.T01 MTR_3g110010 28.030 396 177 13 17 325 12 386 4.88e-19 88.6
MsG0480019466.01.T01 MTR_7g098480 31.310 313 166 12 18 318 18 293 5.28e-19 87.8
MsG0480019466.01.T01 MTR_7g034110 32.063 315 147 10 15 326 8 258 7.00e-19 86.7
MsG0480019466.01.T01 MTR_1g066830 28.981 314 178 9 18 316 8 291 7.62e-19 86.7
MsG0480019466.01.T01 MTR_8g445780 28.339 307 183 10 14 318 9 280 9.70e-19 86.7
MsG0480019466.01.T01 MTR_3g109982 28.021 389 172 13 17 318 12 379 1.02e-18 87.4
MsG0480019466.01.T01 MTR_7g056430 27.795 331 160 8 10 322 1 270 1.86e-18 87.0
MsG0480019466.01.T01 MTR_7g056420 27.795 331 160 8 10 322 1 270 2.23e-18 86.7
MsG0480019466.01.T01 MTR_0009s0080 27.160 324 189 11 16 322 15 308 3.87e-18 85.1
MsG0480019466.01.T01 MTR_3g108560 27.964 329 176 14 12 323 14 298 6.91e-18 83.2
MsG0480019466.01.T01 MTR_7g056280 31.557 244 141 9 13 250 1 224 8.93e-18 84.3
MsG0480019466.01.T01 MTR_5g008950 29.154 319 173 12 20 325 1 279 1.36e-17 83.2
MsG0480019466.01.T01 MTR_3g108560 27.844 334 180 14 12 328 14 303 1.61e-17 82.8
MsG0480019466.01.T01 MTR_7g033990 30.599 317 176 13 18 323 11 294 1.88e-17 83.2
MsG0480019466.01.T01 MTR_6g022500 28.981 314 182 10 18 320 101 384 3.36e-17 82.4
MsG0480019466.01.T01 MTR_3g071850 28.228 333 181 12 11 320 17 314 1.29e-16 81.3
MsG0480019466.01.T01 MTR_1g108800 27.597 308 150 11 14 313 4 246 1.48e-16 79.7
MsG0480019466.01.T01 MTR_5g082930 48.276 87 40 1 20 101 17 103 4.42e-16 76.3
MsG0480019466.01.T01 MTR_6g044572 29.137 278 168 8 18 279 2 266 1.52e-15 77.4
MsG0480019466.01.T01 MTR_2g007090 36.601 153 75 5 171 322 74 205 1.92e-15 75.9
MsG0480019466.01.T01 MTR_6g044560 29.137 278 168 8 18 279 178 442 3.01e-15 77.0
MsG0480019466.01.T01 MTR_7g033945 37.297 185 92 8 15 196 8 171 3.28e-15 73.2
MsG0480019466.01.T01 MTR_0492s0020 29.796 245 129 7 15 256 83 287 1.79e-14 74.3
MsG0480019466.01.T01 MTR_7g033470 42.063 126 54 6 11 131 6 117 2.03e-14 70.1
MsG0480019466.01.T01 MTR_6g013160 26.536 358 213 13 13 324 1 354 2.14e-14 73.9
MsG0480019466.01.T01 MTR_0543s0010 29.796 245 129 7 15 256 83 287 2.53e-14 73.9
MsG0480019466.01.T01 MTR_5g087940 34.375 192 94 7 16 206 24 184 2.90e-14 73.6
MsG0480019466.01.T01 MTR_3g023630 29.630 216 126 6 13 226 3 194 5.47e-14 72.4
MsG0480019466.01.T01 MTR_5g080710 25.272 368 176 13 18 323 33 363 9.08e-14 72.0
MsG0480019466.01.T01 MTR_4g032730 30.189 212 123 6 18 221 15 209 1.07e-13 72.0
MsG0480019466.01.T01 MTR_8g014260 34.597 211 113 7 17 218 15 209 1.16e-13 72.0
MsG0480019466.01.T01 MTR_3g082890 32.243 214 107 6 2 201 68 257 1.65e-13 71.6
MsG0480019466.01.T01 MTR_2g007460 37.398 123 50 4 16 133 10 110 2.59e-13 65.9
MsG0480019466.01.T01 MTR_8g465380 30.102 196 109 6 18 206 12 186 3.72e-13 70.1
MsG0480019466.01.T01 MTR_5g084070 28.090 356 175 14 18 323 13 337 3.90e-13 70.1
MsG0480019466.01.T01 MTR_8g465650 29.082 196 112 6 18 206 12 187 6.04e-13 69.3
MsG0480019466.01.T01 MTR_3g082890 30.769 208 119 5 18 224 17 200 6.42e-13 69.7
MsG0480019466.01.T01 MTR_4g050940 27.426 237 126 8 1 217 50 260 1.64e-12 68.6
MsG0480019466.01.T01 MTR_2g008300 50.000 60 30 0 166 225 4 63 3.28e-12 61.6
MsG0480019466.01.T01 MTR_1g013630 28.221 326 182 15 18 323 39 332 3.47e-12 67.0
MsG0480019466.01.T01 MTR_2g082800 30.622 209 115 6 16 220 25 207 3.98e-12 67.0
MsG0480019466.01.T01 MTR_7g021990 25.672 335 213 8 17 323 4 330 4.38e-12 67.0
MsG0480019466.01.T01 MTR_4g134150 28.837 215 111 9 15 223 11 189 5.91e-12 65.1
MsG0480019466.01.T01 MTR_7g021950 25.672 335 213 8 17 323 4 330 1.04e-11 65.9
MsG0480019466.01.T01 MTR_2g082880 31.088 193 114 7 11 192 3 187 1.12e-11 65.9
MsG0480019466.01.T01 MTR_7g022105 26.113 337 210 11 13 318 1 329 1.54e-11 65.5
MsG0480019466.01.T01 MTR_1g038710 32.394 213 110 11 18 220 19 207 1.82e-11 65.1
MsG0480019466.01.T01 MTR_3g023440 30.000 210 113 10 17 221 2 182 1.90e-11 65.1
MsG0480019466.01.T01 MTR_7g034120 29.858 211 122 8 128 326 30 226 3.73e-11 63.5
MsG0480019466.01.T01 MTR_7g034090 35.503 169 78 6 16 177 2 146 4.05e-11 63.9
MsG0480019466.01.T01 MTR_7g056417 44.286 70 37 1 156 225 7 74 5.20e-11 60.8
MsG0480019466.01.T01 MTR_8g468840 29.717 212 126 6 17 221 13 208 6.97e-11 63.5
MsG0480019466.01.T01 MTR_3g014550 31.282 195 100 7 16 204 9 175 7.17e-11 63.2
MsG0480019466.01.T01 MTR_8g062270 26.977 215 127 5 18 221 16 211 7.21e-11 63.2
MsG0480019466.01.T01 MTR_4g045900 25.767 326 155 12 15 292 23 309 7.55e-11 63.5
MsG0480019466.01.T01 MTR_3g036320 31.771 192 98 8 17 200 19 185 8.54e-11 62.8
MsG0480019466.01.T01 MTR_1g492880 42.222 90 50 2 13 101 1 89 9.12e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019466.01.T01 AT1G16930 32.258 217 113 8 9 220 6 193 9.63e-21 92.8
MsG0480019466.01.T01 AT1G16930 32.258 217 113 8 9 220 6 193 9.63e-21 92.8
MsG0480019466.01.T01 AT1G16930 32.258 217 113 8 9 220 6 193 9.63e-21 92.8
MsG0480019466.01.T01 AT1G51370 31.863 204 109 5 17 220 18 191 2.08e-17 82.4
MsG0480019466.01.T01 AT1G51370 31.863 204 109 5 17 220 18 191 2.96e-17 82.4
MsG0480019466.01.T01 AT1G51370 31.863 204 109 5 17 220 18 191 3.58e-17 82.4
MsG0480019466.01.T01 AT4G14103 25.195 385 189 15 13 326 3 359 1.01e-16 80.9
MsG0480019466.01.T01 AT1G78750 32.212 208 116 7 18 220 18 205 1.17e-16 80.9
MsG0480019466.01.T01 AT1G78750 32.212 208 116 7 18 220 18 205 1.17e-16 80.9
MsG0480019466.01.T01 AT4G14103 29.412 221 122 8 13 225 3 197 2.77e-16 79.3
MsG0480019466.01.T01 AT4G14103 29.412 221 122 8 13 225 3 197 2.77e-16 79.3
MsG0480019466.01.T01 AT4G13985 29.108 213 127 7 18 225 19 212 4.14e-16 79.3
MsG0480019466.01.T01 AT1G55660 31.579 209 113 7 18 220 53 237 4.73e-16 78.6
MsG0480019466.01.T01 AT1G55660 31.579 209 113 7 18 220 53 237 6.53e-16 79.0
MsG0480019466.01.T01 AT4G00160 29.864 221 129 6 16 236 14 208 6.71e-16 78.6
MsG0480019466.01.T01 AT5G53635 29.084 251 132 8 20 263 2 213 7.39e-16 78.6
MsG0480019466.01.T01 AT4G00315 31.250 208 115 7 18 220 2 186 8.62e-16 78.2
MsG0480019466.01.T01 AT5G56810 30.244 205 121 5 16 220 13 195 1.32e-15 76.6
MsG0480019466.01.T01 AT5G56810 30.244 205 121 5 16 220 13 195 2.43e-15 77.0
MsG0480019466.01.T01 AT1G60400 27.157 313 178 12 9 313 5 275 2.99e-15 76.6
MsG0480019466.01.T01 AT4G13965 30.542 203 115 6 18 220 10 186 3.48e-15 76.3
MsG0480019466.01.T01 AT2G26860 30.542 203 123 5 18 220 2 186 7.51e-15 75.1
MsG0480019466.01.T01 AT2G26860 30.542 203 123 5 18 220 2 186 7.51e-15 75.1
MsG0480019466.01.T01 AT5G53840 29.577 213 117 6 11 220 11 193 9.21e-15 75.1
MsG0480019466.01.T01 AT1G13780 29.358 218 124 8 11 219 3 199 1.67e-14 74.3
MsG0480019466.01.T01 AT1G13780 29.358 218 124 8 11 219 3 199 1.91e-14 73.6
MsG0480019466.01.T01 AT1G80470 26.601 203 127 4 18 220 15 195 2.15e-14 73.9
MsG0480019466.01.T01 AT4G26350 27.885 208 119 7 18 221 2 182 4.21e-14 73.2
MsG0480019466.01.T01 AT1G66290 29.469 207 110 7 18 220 29 203 5.66e-14 72.8
MsG0480019466.01.T01 AT3G49480 28.910 211 126 6 17 221 11 203 8.80e-14 72.4
MsG0480019466.01.T01 AT1G32375 29.665 209 115 7 18 220 2 184 9.93e-14 72.0
MsG0480019466.01.T01 AT1G32375 29.665 209 115 7 18 220 2 184 9.93e-14 72.0
MsG0480019466.01.T01 AT3G62430 30.806 211 112 8 18 220 2 186 1.55e-13 71.6
MsG0480019466.01.T01 AT3G59160 28.139 231 120 7 16 220 11 221 1.84e-13 71.2
MsG0480019466.01.T01 AT3G59230 32.444 225 113 10 17 226 11 211 1.86e-13 71.2
MsG0480019466.01.T01 AT2G26030 27.941 204 122 5 18 220 4 183 1.98e-13 71.2
MsG0480019466.01.T01 AT5G56380 29.187 209 120 5 18 220 2 188 2.00e-13 71.2
MsG0480019466.01.T01 AT5G56380 29.187 209 120 5 18 220 2 188 2.00e-13 71.2
MsG0480019466.01.T01 AT2G26030 27.941 204 122 5 18 220 4 183 2.09e-13 71.2
MsG0480019466.01.T01 AT2G26030 27.941 204 122 5 18 220 4 183 2.09e-13 71.2
MsG0480019466.01.T01 AT5G56440 31.373 204 116 7 18 220 2 182 4.50e-13 70.1
MsG0480019466.01.T01 AT1G69630 30.846 201 117 5 18 218 18 196 4.90e-13 70.1
MsG0480019466.01.T01 AT3G59170 29.310 232 118 9 16 220 5 217 7.31e-13 69.7
MsG0480019466.01.T01 AT3G59240 29.493 217 121 7 17 225 7 199 2.21e-12 68.2
MsG0480019466.01.T01 AT5G38390 32.569 218 107 9 18 226 2 188 2.68e-12 67.8
MsG0480019466.01.T01 AT5G22660 29.048 210 111 7 17 220 12 189 3.12e-12 67.4
MsG0480019466.01.T01 AT5G22660 28.216 241 127 9 17 248 12 215 3.50e-12 66.6
MsG0480019466.01.T01 AT4G26340 29.902 204 118 7 18 220 2 181 3.68e-12 67.4
MsG0480019466.01.T01 AT5G22700 30.516 213 112 8 13 220 38 219 4.21e-12 67.0
MsG0480019466.01.T01 AT5G18780 26.429 280 169 11 14 287 7 255 4.94e-12 66.6
MsG0480019466.01.T01 AT5G18780 26.429 280 169 11 14 287 7 255 4.94e-12 66.6
MsG0480019466.01.T01 AT5G22700 30.516 213 112 8 13 220 38 219 5.78e-12 66.6
MsG0480019466.01.T01 AT5G22700 30.516 213 112 8 13 220 1 182 5.95e-12 66.6
MsG0480019466.01.T01 AT5G22700 30.516 213 112 8 13 220 1 182 5.95e-12 66.6
MsG0480019466.01.T01 AT5G22700 30.516 213 112 8 13 220 1 182 5.95e-12 66.6
MsG0480019466.01.T01 AT5G22700 30.516 213 112 8 13 220 1 182 5.95e-12 66.6
MsG0480019466.01.T01 AT3G58940 29.907 214 119 7 18 219 2 196 6.08e-12 67.0
MsG0480019466.01.T01 AT3G58940 29.907 214 119 7 18 219 2 196 6.08e-12 67.0
MsG0480019466.01.T01 AT3G56780 25.329 304 176 8 20 322 9 262 6.15e-12 66.6
MsG0480019466.01.T01 AT3G56780 25.329 304 176 8 20 322 9 262 6.99e-12 66.2
MsG0480019466.01.T01 AT4G14096 27.982 218 127 6 13 225 3 195 7.06e-12 66.6
MsG0480019466.01.T01 AT4G14096 27.982 218 127 6 13 225 3 195 7.06e-12 66.6
MsG0480019466.01.T01 AT5G18780 26.429 280 169 11 14 287 7 255 7.14e-12 66.2
MsG0480019466.01.T01 AT5G18780 26.429 280 169 11 14 287 7 255 7.14e-12 66.2
MsG0480019466.01.T01 AT1G60410 28.112 249 150 8 16 264 8 227 7.18e-12 66.2
MsG0480019466.01.T01 AT3G56780 25.329 304 176 8 20 322 9 262 7.49e-12 66.6
MsG0480019466.01.T01 AT2G42720 31.604 212 121 8 18 224 2 194 1.70e-11 65.5
MsG0480019466.01.T01 AT5G22670 29.583 240 133 9 16 254 9 213 2.04e-11 65.1
MsG0480019466.01.T01 AT5G41630 30.876 217 121 8 14 220 8 205 2.07e-11 65.1
MsG0480019466.01.T01 AT1G48400 29.817 218 116 7 17 224 9 199 2.32e-11 65.1
MsG0480019466.01.T01 AT1G48400 29.817 218 116 7 17 224 9 199 2.66e-11 64.7
MsG0480019466.01.T01 AT3G03040 26.239 343 187 14 18 323 2 315 2.80e-11 64.7
MsG0480019466.01.T01 AT3G58920 30.455 220 119 8 18 225 2 199 2.81e-11 64.7
MsG0480019466.01.T01 AT3G58860 32.227 211 111 9 18 220 7 193 8.62e-11 63.2

Find 65 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATGGTATTGGGCAATT+TGG 0.119988 4:-20723140 None:intergenic
CTTAGTTGGTTCAATGTAAA+AGG 0.182915 4:+20723190 MsG0480019466.01.T01:CDS
AATATGGTATTGGGCAATTT+GGG 0.240928 4:-20723139 None:intergenic
TGCTGGATGTCCTGTTCTTC+AGG 0.257301 4:+20723312 MsG0480019466.01.T01:CDS
TGACTTCCCCGACATCAAAT+TGG 0.283026 4:+20722859 MsG0480019466.01.T01:CDS
TCGAGGATGCAGAAAACTTT+TGG 0.313912 4:+20723281 MsG0480019466.01.T01:CDS
GATGAGGAGGAGGAGGAAAC+AGG 0.317945 4:+20723373 MsG0480019466.01.T01:CDS
CTTGGTGATCGACTATTATA+AGG 0.325342 4:+20723662 MsG0480019466.01.T01:CDS
TCAAAATCTTGAGCTCTATC+AGG 0.328529 4:+20723722 MsG0480019466.01.T01:CDS
CTGGAATTCTATCAAGTAGA+TGG 0.333404 4:+20722807 MsG0480019466.01.T01:CDS
TTACAACTAAATATGGTATT+GGG 0.335205 4:-20723148 None:intergenic
TTTACAACTAAATATGGTAT+TGG 0.336283 4:-20723149 None:intergenic
AGTTTCTAAGAATACAACTA+TGG 0.358386 4:+20723494 MsG0480019466.01.T01:CDS
TCCTGTTCTTCAGGATTTCA+AGG 0.371645 4:+20723321 MsG0480019466.01.T01:CDS
GTTAACGGTTGTAATGAGAT+TGG 0.379501 4:-20723017 None:intergenic
CAAGTAGATGGGTTAAATTA+TGG 0.383654 4:+20722819 MsG0480019466.01.T01:CDS
CTCACATCTTTCTACCAAAC+AGG 0.388658 4:+20722775 MsG0480019466.01.T01:CDS
TGATCGTCCAATTTGATGTC+GGG 0.391881 4:-20722866 None:intergenic
TCCAGTCGTAACAGCCTGTT+TGG 0.393881 4:-20722789 None:intergenic
ACGCGATGTATTACCATTCC+AGG 0.412667 4:+20723345 MsG0480019466.01.T01:CDS
ACGCTTCATTTGTATTGCAT+TGG 0.430555 4:+20723256 MsG0480019466.01.T01:CDS
TAGAAAGATGTGAGAGAATG+AGG 0.435461 4:-20722766 None:intergenic
CTTCAATAATTTGACTCACT+TGG 0.436579 4:+20723644 MsG0480019466.01.T01:CDS
GCCTTGAAATCCTGAAGAAC+AGG 0.438045 4:-20723322 None:intergenic
TAGTGGTTCTAAACCTTAGT+TGG 0.443452 4:+20723176 MsG0480019466.01.T01:CDS
AGTAGACAAACTGATTGAAT+AGG 0.444191 4:-20722901 None:intergenic
GGTTTGAACAAGTTGGTTAA+CGG 0.444367 4:-20723032 None:intergenic
ATGAGGTAGATGACTTCATC+TGG 0.464294 4:-20722749 None:intergenic
TTTGTATTGCATTGGATTCG+AGG 0.471876 4:+20723264 MsG0480019466.01.T01:CDS
TTAACGGTTGTAATGAGATT+GGG 0.480384 4:-20723016 None:intergenic
CAAGTGAGTCAAATTATTGA+AGG 0.485855 4:-20723643 None:intergenic
TAACTTTGGTTTGAACAAGT+TGG 0.491337 4:-20723039 None:intergenic
ACCAAACAGGCTGTTACGAC+TGG 0.493306 4:+20722788 MsG0480019466.01.T01:CDS
AAGATGGAGAAACTTAACTT+TGG 0.500555 4:-20723053 None:intergenic
AAACTGATTGAATAGGAGAA+TGG 0.518696 4:-20722894 None:intergenic
TTGCTTATTCTATCCTTCGA+TGG 0.521215 4:-20722722 None:intergenic
GACAGTTTCTACCTGGACAT+TGG 0.523676 4:+20722956 MsG0480019466.01.T01:CDS
CTGATAGAGAGAATATATGA+TGG 0.526004 4:-20722691 None:intergenic
CATCAGTATGAAGAAGAAGA+TGG 0.529423 4:-20723069 None:intergenic
TTGATCGTCCAATTTGATGT+CGG 0.533517 4:-20722867 None:intergenic
TTGAAGGTAGGAAAATCATA+AGG 0.533767 4:-20723627 None:intergenic
ATATGGTATTGGGCAATTTG+GGG 0.537090 4:-20723138 None:intergenic
GATGTTGATAATGATGATTA+TGG 0.537325 4:+20723088 MsG0480019466.01.T01:CDS
CGCGATGTATTACCATTCCA+GGG 0.548225 4:+20723346 MsG0480019466.01.T01:CDS
TGTTGGCATATCCAATGTCC+AGG 0.550105 4:-20722967 None:intergenic
TTCCATCGACAGTTTCTACC+TGG 0.555119 4:+20722949 MsG0480019466.01.T01:CDS
ATCAGCAATGGCACCATCGA+AGG 0.561948 4:+20722709 MsG0480019466.01.T01:CDS
AGAGTCGACATGATTAATGT+TGG 0.572331 4:-20722984 None:intergenic
TGGAATTCTATCAAGTAGAT+GGG 0.574912 4:+20722808 MsG0480019466.01.T01:CDS
TATGGTATTGGGCAATTTGG+GGG 0.579324 4:-20723137 None:intergenic
TATATTCTCTCTATCAGCAA+TGG 0.585767 4:+20722697 MsG0480019466.01.T01:CDS
ACTAAGGTTTAGAACCACTA+GGG 0.587447 4:-20723173 None:intergenic
GTTTCTAAGAATACAACTAT+GGG 0.590219 4:+20723495 MsG0480019466.01.T01:CDS
TGAGTCAAATTATTGAAGGT+AGG 0.602882 4:-20723639 None:intergenic
TCTAAGAATACAACTATGGG+AGG 0.626202 4:+20723498 MsG0480019466.01.T01:CDS
ATGTCGGGGAAGTCAAGAAG+AGG 0.637672 4:-20722851 None:intergenic
ATATGATGGAGTGAGTTCAA+AGG 0.640847 4:-20722677 None:intergenic
TACTCTGTTATGCTCTCGCG+AGG 0.643476 4:+20722920 MsG0480019466.01.T01:CDS
AACTAAGGTTTAGAACCACT+AGG 0.652810 4:-20723174 None:intergenic
ATTTAGTTGTAAAACCCTAG+TGG 0.654056 4:+20723159 MsG0480019466.01.T01:CDS
CGGTTGTAATGAGATTGGGA+AGG 0.662361 4:-20723012 None:intergenic
GATCGTCCAATTTGATGTCG+GGG 0.668729 4:-20722865 None:intergenic
GTCCAGGTAGAAACTGTCGA+TGG 0.669227 4:-20722951 None:intergenic
GCGATGTATTACCATTCCAG+GGG 0.707500 4:+20723347 MsG0480019466.01.T01:CDS
CGATGTATTACCATTCCAGG+GGG 0.733020 4:+20723348 MsG0480019466.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAAAGTGACTTCAT+AGG - Chr4:20723472-20723491 None:intergenic 20.0%
!! TTACAACTAAATATGGTATT+GGG - Chr4:20723151-20723170 None:intergenic 20.0%
!! TTTACAACTAAATATGGTAT+TGG - Chr4:20723152-20723171 None:intergenic 20.0%
! GAGTATACATCTAAATTATG+TGG - Chr4:20723608-20723627 None:intergenic 25.0%
!! AGTTTCTAAGAATACAACTA+TGG + Chr4:20723494-20723513 MsG0480019466.01.T01:CDS 25.0%
!! GTTTCTAAGAATACAACTAT+GGG + Chr4:20723495-20723514 MsG0480019466.01.T01:CDS 25.0%
!! TAGGGTTTTACAACTAAATA+TGG - Chr4:20723158-20723177 None:intergenic 25.0%
!!! GATGTTGATAATGATGATTA+TGG + Chr4:20723088-20723107 MsG0480019466.01.T01:CDS 25.0%
AAACTGATTGAATAGGAGAA+TGG - Chr4:20722897-20722916 None:intergenic 30.0%
AAGATGGAGAAACTTAACTT+TGG - Chr4:20723056-20723075 None:intergenic 30.0%
AGTAGACAAACTGATTGAAT+AGG - Chr4:20722904-20722923 None:intergenic 30.0%
ATTTAGTTGTAAAACCCTAG+TGG + Chr4:20723159-20723178 MsG0480019466.01.T01:CDS 30.0%
CAAGTGAGTCAAATTATTGA+AGG - Chr4:20723646-20723665 None:intergenic 30.0%
CTGATAGAGAGAATATATGA+TGG - Chr4:20722694-20722713 None:intergenic 30.0%
CTTCAATAATTTGACTCACT+TGG + Chr4:20723644-20723663 MsG0480019466.01.T01:CDS 30.0%
TATATTCTCTCTATCAGCAA+TGG + Chr4:20722697-20722716 MsG0480019466.01.T01:CDS 30.0%
TGAGTCAAATTATTGAAGGT+AGG - Chr4:20723642-20723661 None:intergenic 30.0%
TGGAATTCTATCAAGTAGAT+GGG + Chr4:20722808-20722827 MsG0480019466.01.T01:CDS 30.0%
TTAACGGTTGTAATGAGATT+GGG - Chr4:20723019-20723038 None:intergenic 30.0%
TTGAAGGTAGGAAAATCATA+AGG - Chr4:20723630-20723649 None:intergenic 30.0%
! AAATATGGTATTGGGCAATT+TGG - Chr4:20723143-20723162 None:intergenic 30.0%
! AATATGGTATTGGGCAATTT+GGG - Chr4:20723142-20723161 None:intergenic 30.0%
! CTTAGTTGGTTCAATGTAAA+AGG + Chr4:20723190-20723209 MsG0480019466.01.T01:CDS 30.0%
! CTTTTACATTGAACCAACTA+AGG - Chr4:20723192-20723211 None:intergenic 30.0%
!! CAAGTAGATGGGTTAAATTA+TGG + Chr4:20722819-20722838 MsG0480019466.01.T01:CDS 30.0%
!! TAACTTTGGTTTGAACAAGT+TGG - Chr4:20723042-20723061 None:intergenic 30.0%
ACGCTTCATTTGTATTGCAT+TGG + Chr4:20723256-20723275 MsG0480019466.01.T01:CDS 35.0%
AGAGTCGACATGATTAATGT+TGG - Chr4:20722987-20723006 None:intergenic 35.0%
CATCAGTATGAAGAAGAAGA+TGG - Chr4:20723072-20723091 None:intergenic 35.0%
CTGGAATTCTATCAAGTAGA+TGG + Chr4:20722807-20722826 MsG0480019466.01.T01:CDS 35.0%
GTTAACGGTTGTAATGAGAT+TGG - Chr4:20723020-20723039 None:intergenic 35.0%
TAGAAAGATGTGAGAGAATG+AGG - Chr4:20722769-20722788 None:intergenic 35.0%
TCAAAATCTTGAGCTCTATC+AGG + Chr4:20723722-20723741 MsG0480019466.01.T01:CDS 35.0%
TCTAAGAATACAACTATGGG+AGG + Chr4:20723498-20723517 MsG0480019466.01.T01:CDS 35.0%
TTGATCGTCCAATTTGATGT+CGG - Chr4:20722870-20722889 None:intergenic 35.0%
TTGCTTATTCTATCCTTCGA+TGG - Chr4:20722725-20722744 None:intergenic 35.0%
TTTGTATTGCATTGGATTCG+AGG + Chr4:20723264-20723283 MsG0480019466.01.T01:CDS 35.0%
! AACTAAGGTTTAGAACCACT+AGG - Chr4:20723177-20723196 None:intergenic 35.0%
! ACTAAGGTTTAGAACCACTA+GGG - Chr4:20723176-20723195 None:intergenic 35.0%
! ATATGGTATTGGGCAATTTG+GGG - Chr4:20723141-20723160 None:intergenic 35.0%
! CTTGGTGATCGACTATTATA+AGG + Chr4:20723662-20723681 MsG0480019466.01.T01:CDS 35.0%
! GGCTTTTCTTTTTCTTCTGT+TGG + Chr4:20723211-20723230 MsG0480019466.01.T01:CDS 35.0%
!! AAATGAAGCGTTTTGAGTGA+GGG - Chr4:20723247-20723266 None:intergenic 35.0%
!! AGCTCAAGATTTTGAAGATC+AGG - Chr4:20723717-20723736 None:intergenic 35.0%
!! GCTCAAGATTTTGAAGATCA+GGG - Chr4:20723716-20723735 None:intergenic 35.0%
!! GGTTTGAACAAGTTGGTTAA+CGG - Chr4:20723035-20723054 None:intergenic 35.0%
!! TAGTGGTTCTAAACCTTAGT+TGG + Chr4:20723176-20723195 MsG0480019466.01.T01:CDS 35.0%
ATGAGGTAGATGACTTCATC+TGG - Chr4:20722752-20722771 None:intergenic 40.0%
CTCACATCTTTCTACCAAAC+AGG + Chr4:20722775-20722794 MsG0480019466.01.T01:CDS 40.0%
TCCTGTTCTTCAGGATTTCA+AGG + Chr4:20723321-20723340 MsG0480019466.01.T01:CDS 40.0%
TGATCGTCCAATTTGATGTC+GGG - Chr4:20722869-20722888 None:intergenic 40.0%
! TATGGTATTGGGCAATTTGG+GGG - Chr4:20723140-20723159 None:intergenic 40.0%
! TCGAGGATGCAGAAAACTTT+TGG + Chr4:20723281-20723300 MsG0480019466.01.T01:CDS 40.0%
!! AACTTTTGGTTGCTTGTTGC+TGG + Chr4:20723295-20723314 MsG0480019466.01.T01:CDS 40.0%
!! CAAATGAAGCGTTTTGAGTG+AGG - Chr4:20723248-20723267 None:intergenic 40.0%
ACGCGATGTATTACCATTCC+AGG + Chr4:20723345-20723364 MsG0480019466.01.T01:CDS 45.0%
CGATGTATTACCATTCCAGG+GGG + Chr4:20723348-20723367 MsG0480019466.01.T01:CDS 45.0%
CGCGATGTATTACCATTCCA+GGG + Chr4:20723346-20723365 MsG0480019466.01.T01:CDS 45.0%
CGGTTGTAATGAGATTGGGA+AGG - Chr4:20723015-20723034 None:intergenic 45.0%
GACAGTTTCTACCTGGACAT+TGG + Chr4:20722956-20722975 MsG0480019466.01.T01:CDS 45.0%
GATCGTCCAATTTGATGTCG+GGG - Chr4:20722868-20722887 None:intergenic 45.0%
GCCTTGAAATCCTGAAGAAC+AGG - Chr4:20723325-20723344 None:intergenic 45.0%
GCGATGTATTACCATTCCAG+GGG + Chr4:20723347-20723366 MsG0480019466.01.T01:CDS 45.0%
TGACTTCCCCGACATCAAAT+TGG + Chr4:20722859-20722878 MsG0480019466.01.T01:CDS 45.0%
TGTTGGCATATCCAATGTCC+AGG - Chr4:20722970-20722989 None:intergenic 45.0%
TTCCATCGACAGTTTCTACC+TGG + Chr4:20722949-20722968 MsG0480019466.01.T01:CDS 45.0%
!! GATTTTGAAGATCAGGGCAG+TGG - Chr4:20723710-20723729 None:intergenic 45.0%
ACCAAACAGGCTGTTACGAC+TGG + Chr4:20722788-20722807 MsG0480019466.01.T01:CDS 50.0%
ATCAGCAATGGCACCATCGA+AGG + Chr4:20722709-20722728 MsG0480019466.01.T01:CDS 50.0%
ATGTCGGGGAAGTCAAGAAG+AGG - Chr4:20722854-20722873 None:intergenic 50.0%
GTCCAGGTAGAAACTGTCGA+TGG - Chr4:20722954-20722973 None:intergenic 50.0%
TACTCTGTTATGCTCTCGCG+AGG + Chr4:20722920-20722939 MsG0480019466.01.T01:CDS 50.0%
TATTGGGCAATTTGGGGGCT+CGG - Chr4:20723135-20723154 None:intergenic 50.0%
TCCAGTCGTAACAGCCTGTT+TGG - Chr4:20722792-20722811 None:intergenic 50.0%
TGCTGGATGTCCTGTTCTTC+AGG + Chr4:20723312-20723331 MsG0480019466.01.T01:CDS 50.0%
TGTATTACCATTCCAGGGGG+AGG + Chr4:20723351-20723370 MsG0480019466.01.T01:CDS 50.0%
GATGAGGAGGAGGAGGAAAC+AGG + Chr4:20723373-20723392 MsG0480019466.01.T01:CDS 55.0%
ACCATTCCAGGGGGAGGATG+AGG + Chr4:20723357-20723376 MsG0480019466.01.T01:CDS 60.0%
ATTCCAGGGGGAGGATGAGG+AGG + Chr4:20723360-20723379 MsG0480019466.01.T01:CDS 60.0%
TCCTCATCCTCCCCCTGGAA+TGG - Chr4:20723361-20723380 None:intergenic 60.0%
CCAGGGGGAGGATGAGGAGG+AGG + Chr4:20723363-20723382 MsG0480019466.01.T01:CDS 70.0%
CCTCCTCCTCATCCTCCCCC+TGG - Chr4:20723366-20723385 None:intergenic 70.0%
GGGGGAGGATGAGGAGGAGG+AGG + Chr4:20723366-20723385 MsG0480019466.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 20722680 20723770 20722680 ID=MsG0480019466.01;Name=MsG0480019466.01
Chr4 mRNA 20722680 20723770 20722680 ID=MsG0480019466.01.T01;Parent=MsG0480019466.01;Name=MsG0480019466.01.T01;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|2|0|330
Chr4 exon 20722680 20723519 20722680 ID=MsG0480019466.01.T01:exon:10031;Parent=MsG0480019466.01.T01
Chr4 exon 20723618 20723770 20723618 ID=MsG0480019466.01.T01:exon:10032;Parent=MsG0480019466.01.T01
Chr4 CDS 20722680 20723519 20722680 ID=MsG0480019466.01.T01:cds;Parent=MsG0480019466.01.T01
Chr4 CDS 20723618 20723770 20723618 ID=MsG0480019466.01.T01:cds;Parent=MsG0480019466.01.T01
Gene Sequence

>MsG0480019466.01.T01

TTGAACTCACTCCATCATATATTCTCTCTATCAGCAATGGCACCATCGAAGGATAGAATAAGCAATTTACCAGATGAAGTCATCTACCTCATTCTCTCACATCTTTCTACCAAACAGGCTGTTACGACTGGAATTCTATCAAGTAGATGGGTTAAATTATGGCGCTTTCTTCCTCTTCTTGACTTCCCCGACATCAAATTGGACGATCAAAAATCCATTCTCCTATTCAATCAGTTTGTCTACTCTGTTATGCTCTCGCGAGGTAATCATTCCATCGACAGTTTCTACCTGGACATTGGATATGCCAACATTAATCATGTCGACTCTCTTAGCCTTCCCAATCTCATTACAACCGTTAACCAACTTGTTCAAACCAAAGTTAAGTTTCTCCATCTTCTTCTTCATACTGATGTTGATAATGATGATTATGGTCTTGTTGTACAACACATAATCCGAGCCCCCAAATTGCCCAATACCATATTTAGTTGTAAAACCCTAGTGGTTCTAAACCTTAGTTGGTTCAATGTAAAAGGCTTTTCTTTTTCTTCTGTTGGATTTGAATTTCCCTCACTCAAAACGCTTCATTTGTATTGCATTGGATTCGAGGATGCAGAAAACTTTTGGTTGCTTGTTGCTGGATGTCCTGTTCTTCAGGATTTCAAGGCACGCGATGTATTACCATTCCAGGGGGAGGATGAGGAGGAGGAGGAAACAGGATGTCAAGTGTTTCATAGCTTAAGCTTAAGAGAGTTGATTAGAGCAGAAATAATTAACATTTATTGTGATTTTCCTATGAAGTCACTTTTTAATTTGAAGTTTCTAAGAATACAACTATGGGAGATGTATACTCCTTATGATTTTCCTACCTTCAATAATTTGACTCACTTGGTGATCGACTATTATAAGGACATGTTTATACAAGTGCTCTACCACTGCCCTGATCTTCAAAATCTTGAGCTCTATCAGGTTGTTAAGTTTAAGAATTGTATTTAG

Protein sequence

>MsG0480019466.01.T01

LNSLHHIFSLSAMAPSKDRISNLPDEVIYLILSHLSTKQAVTTGILSSRWVKLWRFLPLLDFPDIKLDDQKSILLFNQFVYSVMLSRGNHSIDSFYLDIGYANINHVDSLSLPNLITTVNQLVQTKVKFLHLLLHTDVDNDDYGLVVQHIIRAPKLPNTIFSCKTLVVLNLSWFNVKGFSFSSVGFEFPSLKTLHLYCIGFEDAENFWLLVAGCPVLQDFKARDVLPFQGEDEEEEETGCQVFHSLSLRELIRAEIINIYCDFPMKSLFNLKFLRIQLWEMYTPYDFPTFNNLTHLVIDYYKDMFIQVLYHCPDLQNLELYQVVKFKNCI*