AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012590.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012590.01.T01 MTR_1g090883 68.439 301 91 2 1 301 1 297 5.25e-141 402
MsG0380012590.01.T01 MTR_4g056040 59.813 321 95 4 11 301 1 317 1.34e-117 348
MsG0380012590.01.T01 MTR_1g038710 62.866 307 104 5 1 301 1 303 3.36e-115 340
MsG0380012590.01.T01 MTR_4g056020 61.856 291 107 3 11 301 1 287 1.77e-113 335
MsG0380012590.01.T01 MTR_4g056030 62.199 291 106 3 11 301 1 287 6.73e-113 334
MsG0380012590.01.T01 MTR_1g090900 89.888 178 18 0 11 188 1 178 1.37e-112 324
MsG0380012590.01.T01 MTR_4g056070 56.495 331 100 5 11 301 1 327 4.36e-108 321
MsG0380012590.01.T01 MTR_4g055580 55.623 329 104 5 10 301 91 414 1.37e-107 325
MsG0380012590.01.T01 MTR_4g055990 56.402 328 102 5 11 301 1 324 1.44e-104 314
MsG0380012590.01.T01 MTR_4g055990 56.402 328 102 5 11 301 1 324 2.05e-104 314
MsG0380012590.01.T01 MTR_4g093690 55.986 284 112 9 3 282 2 276 3.31e-86 259
MsG0380012590.01.T01 MTR_7g110920 50.777 193 56 3 111 301 1 156 3.24e-47 161
MsG0380012590.01.T01 MTR_4g056010 65.625 96 32 1 82 177 3 97 7.95e-33 117
MsG0380012590.01.T01 MTR_7g007080 35.217 230 114 12 19 231 2 213 5.53e-20 89.7
MsG0380012590.01.T01 MTR_5g084070 31.864 295 169 11 15 300 7 278 2.55e-18 85.1
MsG0380012590.01.T01 MTR_5g080710 33.813 278 158 11 17 288 29 286 3.95e-18 84.7
MsG0380012590.01.T01 MTR_1g041245 34.171 199 118 5 11 205 1 190 8.45e-18 83.2
MsG0380012590.01.T01 MTR_7g033945 34.444 180 97 5 11 177 1 172 1.27e-17 79.3
MsG0380012590.01.T01 MTR_2g005990 32.075 212 105 5 21 208 6 202 1.48e-17 82.4
MsG0380012590.01.T01 MTR_8g445780 30.627 271 164 7 19 280 11 266 1.86e-17 82.4
MsG0380012590.01.T01 MTR_2g007500 32.780 241 125 9 14 236 7 228 2.88e-17 81.3
MsG0380012590.01.T01 MTR_6g022360 30.996 271 123 12 21 253 43 287 7.99e-17 80.5
MsG0380012590.01.T01 MTR_7g034115 35.450 189 109 6 21 205 11 190 1.65e-16 79.3
MsG0380012590.01.T01 MTR_8g014260 29.603 277 162 9 1 260 1 261 2.41e-16 79.3
MsG0380012590.01.T01 MTR_7g032380 31.707 205 125 4 11 210 1 195 3.52e-16 78.2
MsG0380012590.01.T01 MTR_7g098570 31.868 273 143 12 21 265 20 277 3.81e-16 79.0
MsG0380012590.01.T01 MTR_1g053025 31.915 235 128 10 21 232 2 227 4.85e-16 78.2
MsG0380012590.01.T01 MTR_7g056447 35.176 199 114 6 14 208 2 189 8.87e-16 76.6
MsG0380012590.01.T01 MTR_8g085430 30.457 197 115 5 21 205 11 197 1.82e-15 75.9
MsG0380012590.01.T01 MTR_6g011460 33.333 222 123 9 21 234 46 250 2.66e-15 76.3
MsG0380012590.01.T01 MTR_8g467800 30.769 299 183 11 14 300 13 299 4.38e-15 75.1
MsG0380012590.01.T01 MTR_3g107100 32.039 206 122 8 11 209 1 195 5.10e-15 75.1
MsG0380012590.01.T01 MTR_8g467800 30.769 299 183 11 14 300 13 299 7.70e-15 74.7
MsG0380012590.01.T01 MTR_4g039440 32.663 199 107 8 21 210 34 214 1.09e-14 74.3
MsG0380012590.01.T01 MTR_7g055943 31.959 194 112 6 21 206 40 221 1.36e-14 73.9
MsG0380012590.01.T01 MTR_8g468840 28.188 298 186 11 20 300 13 299 1.44e-14 73.9
MsG0380012590.01.T01 MTR_3g023630 29.348 276 153 8 21 280 8 257 1.46e-14 73.6
MsG0380012590.01.T01 MTR_5g073420 31.776 214 123 7 11 214 1 201 1.84e-14 73.6
MsG0380012590.01.T01 MTR_4g080590 27.917 240 154 6 18 250 20 247 1.86e-14 73.6
MsG0380012590.01.T01 MTR_4g080590 28.151 238 152 6 20 250 22 247 2.33e-14 73.6
MsG0380012590.01.T01 MTR_8g062270 28.094 299 184 10 21 300 16 302 3.07e-14 73.2
MsG0380012590.01.T01 MTR_3g108150 33.036 224 129 8 20 234 12 223 3.15e-14 72.8
MsG0380012590.01.T01 MTR_7g033915 34.641 153 88 3 11 153 1 151 3.43e-14 72.4
MsG0380012590.01.T01 MTR_4g032730 29.562 274 160 12 21 278 15 271 3.97e-14 72.8
MsG0380012590.01.T01 MTR_7g115270 32.995 197 113 8 20 205 11 199 5.06e-14 72.4
MsG0380012590.01.T01 MTR_7g098510 31.169 231 139 9 21 241 18 238 7.01e-14 71.6
MsG0380012590.01.T01 MTR_6g044560 29.487 234 116 8 11 208 168 388 8.45e-14 72.0
MsG0380012590.01.T01 MTR_1g085120 32.323 198 106 7 21 206 179 360 1.03e-13 71.6
MsG0380012590.01.T01 MTR_1g085120 32.323 198 106 7 21 206 92 273 1.18e-13 71.2
MsG0380012590.01.T01 MTR_1g085120 32.323 198 106 7 21 206 167 348 1.39e-13 71.2
MsG0380012590.01.T01 MTR_3g087260 29.368 269 150 8 19 271 10 254 1.42e-13 71.2
MsG0380012590.01.T01 MTR_3g108560 31.088 193 120 4 18 210 17 196 2.73e-13 69.7
MsG0380012590.01.T01 MTR_3g108560 31.088 193 120 4 18 210 17 196 3.69e-13 69.7
MsG0380012590.01.T01 MTR_6g022500 30.702 228 124 9 21 229 101 313 4.38e-13 69.7
MsG0380012590.01.T01 MTR_6g044572 29.911 224 108 8 21 208 2 212 7.04e-13 68.9
MsG0380012590.01.T01 MTR_2g007450 30.841 214 119 8 14 205 9 215 9.90e-13 68.6
MsG0380012590.01.T01 MTR_7g098480 32.083 240 141 9 21 248 18 247 9.99e-13 68.6
MsG0380012590.01.T01 MTR_8g468760 29.167 288 166 11 15 281 3 273 1.32e-12 68.2
MsG0380012590.01.T01 MTR_7g007370 30.392 204 97 5 7 210 3 161 1.37e-12 67.8
MsG0380012590.01.T01 MTR_7g056287 30.256 195 115 7 21 206 3 185 1.64e-12 67.8
MsG0380012590.01.T01 MTR_7g056277 29.231 195 117 6 21 206 259 441 1.92e-12 67.8
MsG0380012590.01.T01 MTR_8g070950 32.990 194 113 5 18 204 12 195 1.94e-12 67.8
MsG0380012590.01.T01 MTR_7g060470 32.143 196 109 6 21 205 3 185 2.62e-12 67.0
MsG0380012590.01.T01 MTR_1g107385 31.020 245 131 8 20 232 31 269 3.19e-12 67.0
MsG0380012590.01.T01 MTR_0492s0020 31.651 218 126 8 20 229 85 287 6.80e-12 65.9
MsG0380012590.01.T01 MTR_3g109982 33.000 200 119 6 16 212 8 195 7.03e-12 66.2
MsG0380012590.01.T01 MTR_0543s0010 31.651 218 126 8 20 229 85 287 7.43e-12 65.9
MsG0380012590.01.T01 MTR_3g110010 33.000 200 119 6 16 212 8 195 7.93e-12 66.2
MsG0380012590.01.T01 MTR_8g014160 27.796 313 182 10 14 300 34 328 9.59e-12 65.5
MsG0380012590.01.T01 MTR_1g013560 31.019 216 125 7 6 208 4 208 1.01e-11 65.1
MsG0380012590.01.T01 MTR_7g033990 27.984 243 140 7 11 234 1 227 1.46e-11 65.1
MsG0380012590.01.T01 MTR_7g007340 30.244 205 111 5 5 209 2 174 1.77e-11 64.7
MsG0380012590.01.T01 MTR_5g058100 25.940 266 161 8 21 270 9 254 1.85e-11 64.7
MsG0380012590.01.T01 MTR_5g005690 28.390 236 151 7 1 229 1 225 1.88e-11 64.7
MsG0380012590.01.T01 MTR_1g013560 31.019 216 125 7 6 208 4 208 1.94e-11 64.7
MsG0380012590.01.T01 MTR_2g007400 31.707 205 116 7 21 208 12 209 2.10e-11 64.3
MsG0380012590.01.T01 MTR_4g050250 28.990 307 174 12 21 294 21 316 2.61e-11 64.3
MsG0380012590.01.T01 MTR_5g058000 28.636 220 132 6 15 221 2 209 2.65e-11 63.9
MsG0380012590.01.T01 MTR_8g062310 32.673 202 112 9 11 205 15 199 3.09e-11 63.9
MsG0380012590.01.T01 MTR_7g110910 66.000 50 15 1 1 50 148 195 3.31e-11 62.0
MsG0380012590.01.T01 MTR_7g034110 28.856 201 128 7 11 205 1 192 4.15e-11 63.2
MsG0380012590.01.T01 MTR_7g056280 34.831 178 105 5 17 186 2 176 4.41e-11 63.9
MsG0380012590.01.T01 MTR_5g083890 30.435 230 131 7 20 228 5 226 4.77e-11 63.5
MsG0380012590.01.T01 MTR_2g047848 32.314 229 123 12 16 227 2 215 5.17e-11 63.2
MsG0380012590.01.T01 MTR_7g032370 32.075 159 99 4 32 186 1 154 5.23e-11 63.2
MsG0380012590.01.T01 MTR_7g033940 33.333 126 78 2 23 144 96 219 7.06e-11 61.2
MsG0380012590.01.T01 MTR_8g469020 31.527 203 119 7 21 204 7 208 7.20e-11 62.8
MsG0380012590.01.T01 MTR_3g014590 26.939 245 164 6 11 251 1 234 7.76e-11 62.8
MsG0380012590.01.T01 MTR_4g098590 30.677 251 142 9 23 247 1 245 7.90e-11 62.8
MsG0380012590.01.T01 MTR_5g058350 30.108 186 97 6 21 205 8 161 8.35e-11 60.5
MsG0380012590.01.T01 MTR_1g115245 31.176 170 112 1 15 179 20 189 8.72e-11 62.0
MsG0380012590.01.T01 MTR_6g040270 30.457 197 114 7 23 210 10 192 9.38e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012590.01.T01 AT4G14103 35.945 217 122 7 20 227 7 215 2.31e-24 101
MsG0380012590.01.T01 AT4G14103 35.945 217 122 7 20 227 7 215 2.31e-24 101
MsG0380012590.01.T01 AT4G14103 35.945 217 122 7 20 227 7 215 3.08e-24 102
MsG0380012590.01.T01 AT4G00315 32.661 248 143 9 21 257 2 236 7.55e-23 98.2
MsG0380012590.01.T01 AT4G26340 32.404 287 168 12 21 300 2 269 5.14e-22 95.5
MsG0380012590.01.T01 AT1G55660 32.530 249 144 10 20 257 52 287 5.85e-22 94.7
MsG0380012590.01.T01 AT1G55660 32.661 248 143 10 21 257 53 287 7.01e-22 95.9
MsG0380012590.01.T01 AT4G10400 31.944 288 167 11 21 300 2 268 1.30e-21 94.4
MsG0380012590.01.T01 AT4G10400 31.944 288 167 11 21 300 2 268 1.30e-21 94.4
MsG0380012590.01.T01 AT4G10400 31.944 288 167 11 21 300 2 268 1.30e-21 94.4
MsG0380012590.01.T01 AT5G56400 30.634 284 177 8 5 281 17 287 2.31e-21 94.0
MsG0380012590.01.T01 AT2G26860 31.879 298 157 13 20 294 1 275 1.07e-20 91.7
MsG0380012590.01.T01 AT2G26860 31.879 298 157 13 20 294 1 275 1.07e-20 91.7
MsG0380012590.01.T01 AT5G60610 31.250 304 152 16 21 298 2 274 1.09e-20 91.7
MsG0380012590.01.T01 AT5G60610 31.250 304 152 16 21 298 2 274 1.09e-20 91.7
MsG0380012590.01.T01 AT3G59230 31.930 285 153 12 20 280 11 278 1.16e-20 92.0
MsG0380012590.01.T01 AT3G59190 35.683 227 118 7 20 229 11 226 1.76e-20 90.9
MsG0380012590.01.T01 AT5G56420 36.150 213 118 8 20 225 5 206 2.13e-20 90.9
MsG0380012590.01.T01 AT5G56420 36.150 213 118 8 20 225 5 206 2.13e-20 90.9
MsG0380012590.01.T01 AT5G56420 36.150 213 118 8 20 225 5 206 2.13e-20 90.9
MsG0380012590.01.T01 AT3G59190 35.683 227 118 7 20 229 11 226 3.48e-20 90.9
MsG0380012590.01.T01 AT4G09920 32.342 269 161 11 20 280 1 256 1.32e-19 87.0
MsG0380012590.01.T01 AT4G09920 32.342 269 161 11 20 280 1 256 1.32e-19 87.0
MsG0380012590.01.T01 AT4G09920 32.342 269 161 11 20 280 1 256 1.32e-19 87.0
MsG0380012590.01.T01 AT4G09920 32.463 268 160 11 21 280 2 256 1.56e-19 87.4
MsG0380012590.01.T01 AT4G09920 32.463 268 160 11 21 280 2 256 1.56e-19 87.4
MsG0380012590.01.T01 AT5G56370 30.677 251 143 8 21 260 2 232 2.22e-19 87.0
MsG0380012590.01.T01 AT2G42720 33.704 270 151 13 21 278 2 255 2.78e-19 87.8
MsG0380012590.01.T01 AT5G56370 30.677 251 143 8 21 260 2 232 2.88e-19 87.8
MsG0380012590.01.T01 AT5G56370 30.677 251 143 8 21 260 2 232 2.88e-19 87.8
MsG0380012590.01.T01 AT5G56380 30.667 300 167 10 21 293 2 287 7.51e-19 86.7
MsG0380012590.01.T01 AT5G56380 30.667 300 167 10 21 293 2 287 7.51e-19 86.7
MsG0380012590.01.T01 AT1G51370 28.906 256 149 7 5 253 3 232 2.28e-18 84.7
MsG0380012590.01.T01 AT2G04230 31.984 247 148 8 20 255 12 249 3.66e-18 84.7
MsG0380012590.01.T01 AT4G14096 31.944 216 130 5 20 227 7 213 5.39e-18 84.3
MsG0380012590.01.T01 AT4G14096 31.944 216 130 5 20 227 7 213 5.39e-18 84.3
MsG0380012590.01.T01 AT1G51370 29.134 254 147 7 7 253 5 232 6.34e-18 84.0
MsG0380012590.01.T01 AT1G51370 29.134 254 147 7 7 253 5 232 6.69e-18 84.0
MsG0380012590.01.T01 AT4G00160 31.687 243 153 5 20 257 15 249 1.49e-17 82.8
MsG0380012590.01.T01 AT3G59160 28.689 244 133 8 20 230 12 247 2.54e-17 82.4
MsG0380012590.01.T01 AT5G41840 28.704 324 178 10 21 300 14 328 3.43e-17 82.0
MsG0380012590.01.T01 AT3G58860 29.276 304 174 11 18 300 4 287 3.91e-17 81.6
MsG0380012590.01.T01 AT2G29910 30.075 266 168 9 20 280 4 256 6.25e-17 80.5
MsG0380012590.01.T01 AT2G29910 30.075 266 168 9 20 280 4 256 6.25e-17 80.5
MsG0380012590.01.T01 AT3G50710 30.120 249 150 10 21 257 2 238 6.58e-17 80.9
MsG0380012590.01.T01 AT2G29910 30.075 266 168 9 20 280 4 256 9.52e-17 80.1
MsG0380012590.01.T01 AT2G29910 30.075 266 168 9 20 280 4 256 9.52e-17 80.1
MsG0380012590.01.T01 AT2G29910 30.075 266 168 9 20 280 4 256 9.52e-17 80.1
MsG0380012590.01.T01 AT2G29910 30.075 266 168 9 20 280 4 256 9.52e-17 80.1
MsG0380012590.01.T01 AT2G29910 30.075 266 168 9 20 280 28 280 1.21e-16 79.7
MsG0380012590.01.T01 AT3G59200 31.136 273 155 11 20 276 6 261 1.46e-16 79.7
MsG0380012590.01.T01 AT5G56440 31.752 274 164 12 21 285 2 261 3.33e-16 79.0
MsG0380012590.01.T01 AT3G26922 29.876 241 152 8 20 255 13 241 4.04e-16 77.8
MsG0380012590.01.T01 AT3G26922 29.876 241 152 8 20 255 13 241 4.04e-16 77.8
MsG0380012590.01.T01 AT3G59200 31.136 273 155 11 20 276 6 261 4.12e-16 79.0
MsG0380012590.01.T01 AT4G00320 27.900 319 182 10 17 299 9 315 5.48e-16 78.6
MsG0380012590.01.T01 AT3G59210 29.487 312 182 9 17 301 3 303 6.77e-16 78.2
MsG0380012590.01.T01 AT3G59210 29.487 312 182 9 17 301 3 303 6.77e-16 78.2
MsG0380012590.01.T01 AT3G59210 29.487 312 182 9 17 301 3 303 6.77e-16 78.2
MsG0380012590.01.T01 AT3G59210 29.487 312 182 9 17 301 3 303 6.77e-16 78.2
MsG0380012590.01.T01 AT3G59210 29.487 312 182 9 17 301 3 303 6.77e-16 78.2
MsG0380012590.01.T01 AT5G38590 31.452 248 142 10 20 257 1 230 7.46e-16 76.6
MsG0380012590.01.T01 AT5G41830 27.812 320 183 10 17 300 9 316 8.82e-16 77.8
MsG0380012590.01.T01 AT3G42770 31.229 301 162 14 26 301 4 284 1.03e-15 77.8
MsG0380012590.01.T01 AT3G03030 37.762 143 78 3 21 153 2 143 1.14e-15 76.6
MsG0380012590.01.T01 AT5G44950 28.369 282 167 12 20 287 3 263 1.14e-15 77.4
MsG0380012590.01.T01 AT3G03030 37.762 143 78 3 21 153 2 143 1.41e-15 77.0
MsG0380012590.01.T01 AT3G44060 31.343 268 148 13 26 278 4 250 1.51e-15 77.0
MsG0380012590.01.T01 AT5G38590 31.687 243 146 9 21 257 2 230 1.70e-15 76.6
MsG0380012590.01.T01 AT3G03040 28.254 315 176 11 21 300 2 301 1.98e-15 76.6
MsG0380012590.01.T01 AT2G42730 29.603 277 162 11 20 280 4 263 2.29e-15 76.6
MsG0380012590.01.T01 AT5G56810 28.968 252 146 7 21 257 15 248 2.54e-15 75.5
MsG0380012590.01.T01 AT5G38392 34.951 206 109 5 21 210 2 198 2.92e-15 73.9
MsG0380012590.01.T01 AT5G56810 28.968 252 146 7 21 257 15 248 3.29e-15 75.9
MsG0380012590.01.T01 AT1G58310 29.210 291 161 9 20 280 7 282 4.89e-15 75.5
MsG0380012590.01.T01 AT3G59170 30.769 247 126 9 20 230 6 243 5.23e-15 75.5
MsG0380012590.01.T01 AT3G49030 29.719 249 148 10 19 256 19 251 8.31e-15 74.7
MsG0380012590.01.T01 AT3G49030 29.719 249 148 10 19 256 19 251 1.03e-14 74.7
MsG0380012590.01.T01 AT3G44810 28.625 269 169 8 23 278 9 267 1.11e-14 74.3
MsG0380012590.01.T01 AT4G15060 30.120 249 153 9 18 257 23 259 1.58e-14 73.9
MsG0380012590.01.T01 AT3G59250 29.749 279 157 8 20 295 6 248 1.64e-14 73.9
MsG0380012590.01.T01 AT4G13960 34.343 198 109 6 21 208 2 188 1.68e-14 73.9
MsG0380012590.01.T01 AT4G13960 34.343 198 109 6 21 208 2 188 1.68e-14 73.9
MsG0380012590.01.T01 AT4G22280 29.720 286 181 8 20 300 1 271 2.02e-14 73.6
MsG0380012590.01.T01 AT4G22280 29.720 286 181 8 20 300 1 271 2.22e-14 72.8
MsG0380012590.01.T01 AT3G49150 28.061 196 129 3 19 208 14 203 2.74e-14 73.2
MsG0380012590.01.T01 AT3G58900 29.286 280 158 10 21 280 2 261 3.14e-14 72.4
MsG0380012590.01.T01 AT2G26030 29.762 252 146 10 21 257 4 239 3.47e-14 72.8
MsG0380012590.01.T01 AT2G26030 29.762 252 146 10 21 257 4 239 3.47e-14 72.8
MsG0380012590.01.T01 AT2G26030 29.762 252 146 10 21 257 4 239 3.51e-14 72.8
MsG0380012590.01.T01 AT5G44490 29.694 229 126 8 1 213 1 210 4.00e-14 72.8
MsG0380012590.01.T01 AT5G44490 29.694 229 126 8 1 213 1 210 4.30e-14 72.8
MsG0380012590.01.T01 AT3G58900 29.286 280 158 10 21 280 2 261 5.18e-14 71.6
MsG0380012590.01.T01 AT3G58900 29.286 280 158 10 21 280 2 261 5.18e-14 71.6
MsG0380012590.01.T01 AT3G58900 29.286 280 158 10 21 280 2 261 6.40e-14 72.4
MsG0380012590.01.T01 AT1G66310 30.000 270 151 11 1 255 1 247 6.89e-14 72.0
MsG0380012590.01.T01 AT3G59150 32.735 223 122 10 3 213 2 208 8.44e-14 72.0
MsG0380012590.01.T01 AT4G15060 29.839 248 153 9 19 257 170 405 8.63e-14 72.0
MsG0380012590.01.T01 AT5G56690 29.044 272 170 8 23 283 4 263 1.31e-13 71.2
MsG0380012590.01.T01 AT4G26350 29.381 194 119 4 21 208 2 183 1.52e-13 70.9
MsG0380012590.01.T01 AT5G53840 31.169 231 134 8 9 229 3 218 1.83e-13 70.9
MsG0380012590.01.T01 AT5G53635 30.435 299 167 14 23 299 2 281 2.45e-13 70.5
MsG0380012590.01.T01 AT1G06630 29.043 303 172 13 20 300 11 292 3.49e-13 69.3
MsG0380012590.01.T01 AT1G06630 29.043 303 172 13 20 300 11 292 4.93e-13 69.7
MsG0380012590.01.T01 AT1G06630 29.043 303 172 13 20 300 11 292 5.04e-13 68.9
MsG0380012590.01.T01 AT1G06630 29.043 303 172 13 20 300 11 292 5.04e-13 68.9
MsG0380012590.01.T01 AT5G22700 31.937 191 115 5 21 208 6 184 5.21e-13 69.3
MsG0380012590.01.T01 AT5G22700 31.937 191 115 5 21 208 6 184 5.21e-13 69.3
MsG0380012590.01.T01 AT5G22700 31.937 191 115 5 21 208 6 184 5.21e-13 69.3
MsG0380012590.01.T01 AT5G22700 31.937 191 115 5 21 208 6 184 5.21e-13 69.3
MsG0380012590.01.T01 AT1G06630 29.043 303 172 13 20 300 11 292 5.60e-13 69.3
MsG0380012590.01.T01 AT1G06630 29.043 303 172 13 20 300 11 292 5.60e-13 69.3
MsG0380012590.01.T01 AT1G06630 29.043 303 172 13 20 300 11 292 5.60e-13 69.3
MsG0380012590.01.T01 AT1G06630 29.043 303 172 13 20 300 11 292 5.60e-13 69.3
MsG0380012590.01.T01 AT5G22700 31.937 191 115 5 21 208 43 221 5.61e-13 69.3
MsG0380012590.01.T01 AT3G52680 29.553 291 184 8 20 300 20 299 5.99e-13 69.3
MsG0380012590.01.T01 AT5G22700 31.937 191 115 5 21 208 43 221 6.53e-13 69.3
MsG0380012590.01.T01 AT1G06630 29.043 303 172 13 20 300 20 301 7.23e-13 68.9
MsG0380012590.01.T01 AT1G78760 26.568 271 174 8 19 280 14 268 8.68e-13 68.9
MsG0380012590.01.T01 AT3G52680 29.210 291 185 8 20 300 20 299 8.90e-13 68.6
MsG0380012590.01.T01 AT3G58920 29.032 279 170 9 21 280 2 271 9.99e-13 68.6
MsG0380012590.01.T01 AT3G49040 29.032 248 150 9 18 255 14 245 1.61e-12 67.4
MsG0380012590.01.T01 AT3G51530 29.568 301 181 12 1 292 14 292 1.98e-12 67.8
MsG0380012590.01.T01 AT5G56410 31.197 234 117 12 21 224 2 221 2.53e-12 67.4
MsG0380012590.01.T01 AT5G22670 26.667 255 167 7 11 257 1 243 3.15e-12 67.0
MsG0380012590.01.T01 AT1G13780 28.179 291 172 12 21 290 10 284 3.37e-12 66.6
MsG0380012590.01.T01 AT1G66300 28.261 230 135 8 1 213 1 217 3.38e-12 67.0
MsG0380012590.01.T01 AT1G13780 28.179 291 172 12 21 290 10 284 3.99e-12 66.6
MsG0380012590.01.T01 AT3G58980 28.727 275 174 10 21 285 2 264 4.08e-12 67.0
MsG0380012590.01.T01 AT3G58960 27.244 312 178 14 21 301 2 295 4.54e-12 66.6
MsG0380012590.01.T01 AT5G50270 29.876 241 155 7 21 255 2 234 9.96e-12 65.1
MsG0380012590.01.T01 AT5G38396 29.787 282 159 10 21 281 2 265 1.29e-11 65.5
MsG0380012590.01.T01 AT2G29930 29.195 298 179 14 20 301 11 292 1.60e-11 65.1
MsG0380012590.01.T01 AT2G29930 29.195 298 179 14 20 301 11 292 1.60e-11 65.1
MsG0380012590.01.T01 AT5G18780 31.138 167 106 4 20 183 10 170 1.63e-11 64.7
MsG0380012590.01.T01 AT5G18780 31.138 167 106 4 20 183 10 170 1.63e-11 64.7
MsG0380012590.01.T01 AT5G50270 29.876 241 155 7 21 255 2 234 1.89e-11 64.7
MsG0380012590.01.T01 AT3G58930 27.758 281 169 9 21 280 2 269 2.30e-11 64.7
MsG0380012590.01.T01 AT3G58930 27.758 281 169 9 21 280 2 269 2.30e-11 64.7
MsG0380012590.01.T01 AT3G58930 27.758 281 169 9 21 280 2 269 2.30e-11 64.7
MsG0380012590.01.T01 AT5G18780 31.138 167 106 4 20 183 10 170 2.97e-11 64.3
MsG0380012590.01.T01 AT5G18780 31.138 167 106 4 20 183 10 170 2.97e-11 64.3
MsG0380012590.01.T01 AT3G59240 26.910 301 189 9 20 300 7 296 3.67e-11 63.9
MsG0380012590.01.T01 AT1G16930 25.000 252 164 6 15 257 9 244 4.23e-11 63.5
MsG0380012590.01.T01 AT1G16930 25.000 252 164 6 15 257 9 244 4.23e-11 63.5
MsG0380012590.01.T01 AT1G16930 25.000 252 164 6 15 257 9 244 4.23e-11 63.5
MsG0380012590.01.T01 AT3G59000 30.137 219 121 9 21 209 2 218 4.30e-11 63.2
MsG0380012590.01.T01 AT5G22660 26.471 272 176 9 20 281 12 269 4.43e-11 63.2
MsG0380012590.01.T01 AT3G58880 29.279 222 134 6 21 229 3 214 4.63e-11 63.5
MsG0380012590.01.T01 AT3G26930 29.831 295 182 11 12 300 12 287 5.51e-11 63.5
MsG0380012590.01.T01 AT5G22660 27.861 201 134 5 20 219 12 202 8.64e-11 62.8
MsG0380012590.01.T01 AT5G38590 30.909 165 107 5 21 180 2 164 8.95e-11 62.0

Find 55 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATTGCTTTGGACGAAAT+AGG 0.255211 3:-20369696 None:intergenic
CAAGGTTGAGGAACTTGAAT+TGG 0.292646 3:+20369836 MsG0380012590.01.T01:CDS
TGTTTATTTATGCCTGTTGC+TGG 0.329287 3:+20370167 MsG0380012590.01.T01:CDS
GGATTGCTTTGGACGAAATA+GGG 0.347836 3:-20369695 None:intergenic
TCTTCGCATTTCTAAGCATC+TGG 0.358395 3:+20370310 MsG0380012590.01.T01:CDS
GATAATTCAAAGTCAAGGTT+CGG 0.364707 3:-20369660 None:intergenic
TCAGAAGAAGAATTAATTCC+TGG 0.365045 3:-20369951 None:intergenic
GCTCGTGGTCTTGAAATTGC+GGG 0.367607 3:+20369917 MsG0380012590.01.T01:CDS
AAAGTCAAGGTTCGGGATCT+TGG 0.367911 3:-20369652 None:intergenic
AACCAATCTTATTGCCCTTT+AGG 0.384324 3:+20369877 MsG0380012590.01.T01:CDS
ATATACAGATTGGATTGCTT+TGG 0.388000 3:-20369706 None:intergenic
ACCCACAAGTGCATATCATA+TGG 0.391836 3:-20369795 None:intergenic
AGCCTAAAGGGCAATAAGAT+TGG 0.392082 3:-20369879 None:intergenic
ATAATTCAAAGTCAAGGTTC+GGG 0.396163 3:-20369659 None:intergenic
CCCATATGATATGCACTTGT+GGG 0.415753 3:+20369794 MsG0380012590.01.T01:CDS
AGGAACTTGAATTGGATTGT+AGG 0.418034 3:+20369844 MsG0380012590.01.T01:CDS
AAGAGTGGCTCGATCAAGAT+TGG 0.444407 3:-20370291 None:intergenic
TTGTAGATAGAACACTTGTT+TGG 0.449162 3:-20369611 None:intergenic
GACCACGAGCGACTTAGAAA+TGG 0.449696 3:-20369904 None:intergenic
ATCCTGCTCTTCATCAGATT+CGG 0.451545 3:-20369520 None:intergenic
GGAGAGCTGCATATACAGAT+TGG 0.456055 3:-20369716 None:intergenic
AATTTGCAGTGGACACACTT+TGG 0.462341 3:-20370192 None:intergenic
CACACTTTGGAACCAGCAAC+AGG 0.468311 3:-20370179 None:intergenic
CTTAGAAATGGAAAGCCTAA+AGG 0.485386 3:-20369892 None:intergenic
TTAGAAATGGAAAGCCTAAA+GGG 0.487373 3:-20369891 None:intergenic
TAGAATTGAACACAATAAGT+TGG 0.489735 3:-20370007 None:intergenic
CGCTCGTGGTCTTGAAATTG+CGG 0.490023 3:+20369916 MsG0380012590.01.T01:CDS
CAAGTGTTCTATCTACAAGA+TGG 0.503005 3:+20369616 MsG0380012590.01.T01:CDS
TTGCGGGGCGGAACTATGCC+AGG 0.505023 3:+20369933 MsG0380012590.01.T01:CDS
CTCCGAATCTGATGAAGAGC+AGG 0.514545 3:+20369518 MsG0380012590.01.T01:CDS
AATGAACACTCTCTTTAATG+AGG 0.516242 3:-20370144 None:intergenic
CCCACAAGTGCATATCATAT+GGG 0.516903 3:-20369794 None:intergenic
ATCTCGTTGTCCACATCTTG+AGG 0.524833 3:+20370070 MsG0380012590.01.T01:CDS
AGCATTAGACCTCAAGGTTG+AGG 0.528928 3:+20369824 MsG0380012590.01.T01:CDS
TTCAAAAGCATTAGACCTCA+AGG 0.530430 3:+20369818 MsG0380012590.01.T01:CDS
TATGAAGAACTTCAAGTGAC+GGG 0.538915 3:-20370220 None:intergenic
CCCCATATGATATGCACTTG+TGG 0.550566 3:+20369793 MsG0380012590.01.T01:CDS
TTCCATTTCTAAGTCGCTCG+TGG 0.557905 3:+20369902 MsG0380012590.01.T01:CDS
CTAAGTCTCTATAGTGACAA+TGG 0.561315 3:+20369765 MsG0380012590.01.T01:CDS
AGTTTGTATTCACTCTTGAG+AGG 0.563248 3:+20370341 MsG0380012590.01.T01:CDS
AAGTGTTCTATCTACAAGAT+GGG 0.565572 3:+20369617 MsG0380012590.01.T01:CDS
GACGGGGCATTAATTTGCAG+TGG 0.587492 3:-20370203 None:intergenic
AAAACAAATTCCTCAAGATG+TGG 0.591033 3:-20370080 None:intergenic
TCTTTGATAATTCAAAGTCA+AGG 0.592329 3:-20369665 None:intergenic
ATGAACACTCTCTTTAATGA+GGG 0.595651 3:-20370143 None:intergenic
ATTCAAGTTCCTCAACCTTG+AGG 0.595725 3:-20369833 None:intergenic
CAATAAGATTGGTTTCTCGA+TGG 0.596958 3:-20369868 None:intergenic
AGATGAAGAATCTTTAGTGA+CGG 0.601943 3:-20369984 None:intergenic
ATATGAAGAACTTCAAGTGA+CGG 0.613196 3:-20370221 None:intergenic
CTCGTGGTCTTGAAATTGCG+GGG 0.626254 3:+20369918 MsG0380012590.01.T01:CDS
ATGCTTAGAAATGCGAAGAG+TGG 0.630789 3:-20370306 None:intergenic
TATTGTGTTCAATTCTATCG+CGG 0.635341 3:+20370013 MsG0380012590.01.T01:CDS
CCACAAGTGCATATCATATG+GGG 0.653247 3:-20369793 None:intergenic
ATGAAGAACTTCAAGTGACG+GGG 0.714715 3:-20370219 None:intergenic
GTGGTCTTGAAATTGCGGGG+CGG 0.723470 3:+20369921 MsG0380012590.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTAATTCATATTTTCT+TGG - Chr3:20370266-20370285 None:intergenic 15.0%
! TAGAATTGAACACAATAAGT+TGG - Chr3:20370010-20370029 None:intergenic 25.0%
!! TCTTTGATAATTCAAAGTCA+AGG - Chr3:20369668-20369687 None:intergenic 25.0%
AAAACAAATTCCTCAAGATG+TGG - Chr3:20370083-20370102 None:intergenic 30.0%
AAGTGTTCTATCTACAAGAT+GGG + Chr3:20369617-20369636 MsG0380012590.01.T01:CDS 30.0%
AATGAACACTCTCTTTAATG+AGG - Chr3:20370147-20370166 None:intergenic 30.0%
AGATGAAGAATCTTTAGTGA+CGG - Chr3:20369987-20370006 None:intergenic 30.0%
ATAATTCAAAGTCAAGGTTC+GGG - Chr3:20369662-20369681 None:intergenic 30.0%
ATATACAGATTGGATTGCTT+TGG - Chr3:20369709-20369728 None:intergenic 30.0%
ATATGAAGAACTTCAAGTGA+CGG - Chr3:20370224-20370243 None:intergenic 30.0%
ATGAACACTCTCTTTAATGA+GGG - Chr3:20370146-20370165 None:intergenic 30.0%
CAACAAGAAACCAAAAACAA+TGG + Chr3:20369491-20369510 MsG0380012590.01.T01:CDS 30.0%
GATAATTCAAAGTCAAGGTT+CGG - Chr3:20369663-20369682 None:intergenic 30.0%
TATTGTGTTCAATTCTATCG+CGG + Chr3:20370013-20370032 MsG0380012590.01.T01:CDS 30.0%
TCAGAAGAAGAATTAATTCC+TGG - Chr3:20369954-20369973 None:intergenic 30.0%
TTAGAAATGGAAAGCCTAAA+GGG - Chr3:20369894-20369913 None:intergenic 30.0%
TTGTAGATAGAACACTTGTT+TGG - Chr3:20369614-20369633 None:intergenic 30.0%
!!! TTAAGTTTTTAGTGCGTCTT+AGG - Chr3:20369740-20369759 None:intergenic 30.0%
AACCAATCTTATTGCCCTTT+AGG + Chr3:20369877-20369896 MsG0380012590.01.T01:CDS 35.0%
AGGAACTTGAATTGGATTGT+AGG + Chr3:20369844-20369863 MsG0380012590.01.T01:CDS 35.0%
AGTTTGTATTCACTCTTGAG+AGG + Chr3:20370341-20370360 MsG0380012590.01.T01:CDS 35.0%
CAAGTGTTCTATCTACAAGA+TGG + Chr3:20369616-20369635 MsG0380012590.01.T01:CDS 35.0%
CTAAGTCTCTATAGTGACAA+TGG + Chr3:20369765-20369784 MsG0380012590.01.T01:CDS 35.0%
CTTAGAAATGGAAAGCCTAA+AGG - Chr3:20369895-20369914 None:intergenic 35.0%
TATGAAGAACTTCAAGTGAC+GGG - Chr3:20370223-20370242 None:intergenic 35.0%
TGTTTATTTATGCCTGTTGC+TGG + Chr3:20370167-20370186 MsG0380012590.01.T01:CDS 35.0%
!! CAATAAGATTGGTTTCTCGA+TGG - Chr3:20369871-20369890 None:intergenic 35.0%
!! TTCAAAAGCATTAGACCTCA+AGG + Chr3:20369818-20369837 MsG0380012590.01.T01:CDS 35.0%
!!! GGTAAGACTCTTTTGTTGTT+AGG - Chr3:20369593-20369612 None:intergenic 35.0%
AATTTGCAGTGGACACACTT+TGG - Chr3:20370195-20370214 None:intergenic 40.0%
ACCCACAAGTGCATATCATA+TGG - Chr3:20369798-20369817 None:intergenic 40.0%
AGCCTAAAGGGCAATAAGAT+TGG - Chr3:20369882-20369901 None:intergenic 40.0%
ATCCTGCTCTTCATCAGATT+CGG - Chr3:20369523-20369542 None:intergenic 40.0%
ATGAAGAACTTCAAGTGACG+GGG - Chr3:20370222-20370241 None:intergenic 40.0%
ATGCTTAGAAATGCGAAGAG+TGG - Chr3:20370309-20370328 None:intergenic 40.0%
CAAGGTTGAGGAACTTGAAT+TGG + Chr3:20369836-20369855 MsG0380012590.01.T01:CDS 40.0%
CCACAAGTGCATATCATATG+GGG - Chr3:20369796-20369815 None:intergenic 40.0%
CCCACAAGTGCATATCATAT+GGG - Chr3:20369797-20369816 None:intergenic 40.0%
CCCATATGATATGCACTTGT+GGG + Chr3:20369794-20369813 MsG0380012590.01.T01:CDS 40.0%
TCTTCGCATTTCTAAGCATC+TGG + Chr3:20370310-20370329 MsG0380012590.01.T01:CDS 40.0%
! ATTCAAGTTCCTCAACCTTG+AGG - Chr3:20369836-20369855 None:intergenic 40.0%
! GGATTGCTTTGGACGAAATA+GGG - Chr3:20369698-20369717 None:intergenic 40.0%
! TGGATTGCTTTGGACGAAAT+AGG - Chr3:20369699-20369718 None:intergenic 40.0%
AAAGTCAAGGTTCGGGATCT+TGG - Chr3:20369655-20369674 None:intergenic 45.0%
AAGAGTGGCTCGATCAAGAT+TGG - Chr3:20370294-20370313 None:intergenic 45.0%
AGCATTAGACCTCAAGGTTG+AGG + Chr3:20369824-20369843 MsG0380012590.01.T01:CDS 45.0%
ATCTCGTTGTCCACATCTTG+AGG + Chr3:20370070-20370089 MsG0380012590.01.T01:CDS 45.0%
CCCCATATGATATGCACTTG+TGG + Chr3:20369793-20369812 MsG0380012590.01.T01:CDS 45.0%
GGAGAGCTGCATATACAGAT+TGG - Chr3:20369719-20369738 None:intergenic 45.0%
TTCCATTTCTAAGTCGCTCG+TGG + Chr3:20369902-20369921 MsG0380012590.01.T01:CDS 45.0%
CTCCGAATCTGATGAAGAGC+AGG + Chr3:20369518-20369537 MsG0380012590.01.T01:CDS 50.0%
GACCACGAGCGACTTAGAAA+TGG - Chr3:20369907-20369926 None:intergenic 50.0%
! CGCTCGTGGTCTTGAAATTG+CGG + Chr3:20369916-20369935 MsG0380012590.01.T01:CDS 50.0%
! CTCGTGGTCTTGAAATTGCG+GGG + Chr3:20369918-20369937 MsG0380012590.01.T01:CDS 50.0%
! GCTCGTGGTCTTGAAATTGC+GGG + Chr3:20369917-20369936 MsG0380012590.01.T01:CDS 50.0%
! TCGGAGCACGCCATTGTTTT+TGG - Chr3:20369504-20369523 None:intergenic 50.0%
!! CACACTTTGGAACCAGCAAC+AGG - Chr3:20370182-20370201 None:intergenic 50.0%
!! GACGGGGCATTAATTTGCAG+TGG - Chr3:20370206-20370225 None:intergenic 50.0%
! GTGGTCTTGAAATTGCGGGG+CGG + Chr3:20369921-20369940 MsG0380012590.01.T01:CDS 55.0%
TTGCGGGGCGGAACTATGCC+AGG + Chr3:20369933-20369952 MsG0380012590.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 20369480 20370385 20369480 ID=MsG0380012590.01;Name=MsG0380012590.01
Chr3 mRNA 20369480 20370385 20369480 ID=MsG0380012590.01.T01;Parent=MsG0380012590.01;Name=MsG0380012590.01.T01;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|301
Chr3 exon 20369480 20370385 20369480 ID=MsG0380012590.01.T01:exon:3703;Parent=MsG0380012590.01.T01
Chr3 CDS 20369480 20370385 20369480 ID=MsG0380012590.01.T01:cds;Parent=MsG0380012590.01.T01
Gene Sequence

>MsG0380012590.01.T01

ATGGAGGAAGACAACAAGAAACCAAAAACAATGGCGTGCTCCGAATCTGATGAAGAGCAGGATCGATTAAGCAATCTCACAGACGAATTGATTATTCATATTCTGTCTTTCCTAACAACAAAAGAGTCTTACCAAACAAGTGTTCTATCTACAAGATGGGAGTCAATCTGTACCAAGATCCCGAACCTTGACTTTGAATTATCAAAGATTACAGACCCTATTTCGTCCAAAGCAATCCAATCTGTATATGCAGCTCTCCTAAGACGCACTAAAAACTTAAGAAAACTAAGTCTCTATAGTGACAATGGTTGCACCCCATATGATATGCACTTGTGGGTTTCAAAAGCATTAGACCTCAAGGTTGAGGAACTTGAATTGGATTGTAGGTCCATCGAGAAACCAATCTTATTGCCCTTTAGGCTTTCCATTTCTAAGTCGCTCGTGGTCTTGAAATTGCGGGGCGGAACTATGCCAGGAATTAATTCTTCTTCTGATGTGTGTTTTCCGTCACTAAAGATTCTTCATCTCCAACTTATTGTGTTCAATTCTATCGCGGATGATCATAGTGAGTATGATCTCGCTAATTTTCTATCTCGTTGTCCACATCTTGAGGAATTTGTTTTACATGACAACATAAAACAAGCAATCAATATTGTCTCTTTTCCCTCATTAAAGAGAGTGTTCATTTGTTTATTTATGCCTGTTGCTGGTTCCAAAGTGTGTCCACTGCAAATTAATGCCCCGTCACTTGAAGTTCTTCATATTGTTGATGCTTCATTTTCTCCAAGAAAATATGAATTAACAAACTTGTCCAATCTTGATCGAGCCACTCTTCGCATTTCTAAGCATCTGGATTTTAACAGTTTGTATTCACTCTTGAGAGGACTTTATAATGTTAAATCATAG

Protein sequence

>MsG0380012590.01.T01

MEEDNKKPKTMACSESDEEQDRLSNLTDELIIHILSFLTTKESYQTSVLSTRWESICTKIPNLDFELSKITDPISSKAIQSVYAALLRRTKNLRKLSLYSDNGCTPYDMHLWVSKALDLKVEELELDCRSIEKPILLPFRLSISKSLVVLKLRGGTMPGINSSSDVCFPSLKILHLQLIVFNSIADDHSEYDLANFLSRCPHLEEFVLHDNIKQAINIVSFPSLKRVFICLFMPVAGSKVCPLQINAPSLEVLHIVDASFSPRKYELTNLSNLDRATLRISKHLDFNSLYSLLRGLYNVKS*