AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020614.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020614.01.T01 MTR_4g056020 91.549 142 12 0 130 271 249 390 3.23e-87 271
MsG0480020614.01.T01 MTR_4g056020 88.372 129 15 0 1 129 1 129 4.38e-73 235
MsG0480020614.01.T01 MTR_4g055990 86.395 147 15 1 130 271 286 432 8.24e-83 261
MsG0480020614.01.T01 MTR_4g055990 68.072 166 16 2 1 129 1 166 2.98e-62 208
MsG0480020614.01.T01 MTR_4g055990 86.395 147 15 1 130 271 286 432 1.47e-82 261
MsG0480020614.01.T01 MTR_4g055990 68.072 166 16 2 1 129 1 166 4.19e-62 207
MsG0480020614.01.T01 MTR_4g056070 80.986 142 27 0 130 271 289 430 4.90e-75 239
MsG0480020614.01.T01 MTR_4g056070 66.460 161 14 1 1 121 1 161 4.67e-60 201
MsG0480020614.01.T01 MTR_4g056040 80.282 142 28 0 130 271 279 420 5.92e-74 239
MsG0480020614.01.T01 MTR_4g056040 43.413 334 108 10 1 271 1 316 2.36e-62 209
MsG0480020614.01.T01 MTR_4g056030 77.465 142 32 0 130 271 249 390 5.80e-71 230
MsG0480020614.01.T01 MTR_4g056030 90.083 121 12 0 1 121 1 121 5.49e-70 227
MsG0480020614.01.T01 MTR_1g038710 73.239 142 38 0 130 271 265 406 3.98e-63 209
MsG0480020614.01.T01 MTR_1g038710 71.429 126 32 1 1 122 11 136 2.21e-47 167
MsG0480020614.01.T01 MTR_4g055580 80.986 142 27 0 130 271 376 517 4.49e-63 212
MsG0480020614.01.T01 MTR_4g055580 66.456 158 16 2 1 121 92 249 4.29e-58 199
MsG0480020614.01.T01 MTR_7g110920 63.522 159 41 1 130 271 118 276 3.74e-60 197
MsG0480020614.01.T01 MTR_4g056020 90.426 94 9 0 178 271 1 94 5.44e-56 181
MsG0480020614.01.T01 MTR_1g090900 70.940 117 32 1 1 115 1 117 5.96e-51 170
MsG0480020614.01.T01 MTR_1g090883 70.175 114 34 0 2 115 12 125 1.62e-45 160
MsG0480020614.01.T01 MTR_1g090883 72.449 98 27 0 130 227 259 356 1.08e-39 145
MsG0480020614.01.T01 MTR_2g104340 70.755 106 30 1 283 388 293 397 7.13e-45 159
MsG0480020614.01.T01 MTR_8g041270 75.258 97 24 0 292 388 311 407 2.49e-43 155
MsG0480020614.01.T01 MTR_4g093690 62.069 116 42 1 1 116 10 123 8.52e-41 145
MsG0480020614.01.T01 MTR_2g104280 65.625 96 33 0 292 387 310 405 4.02e-34 131
MsG0480020614.01.T01 MTR_2g038680 56.190 105 41 2 284 386 309 410 4.48e-26 108
MsG0480020614.01.T01 MTR_5g097330 60.440 91 34 1 299 387 313 403 8.14e-26 108
MsG0480020614.01.T01 MTR_4g007940 47.154 123 61 2 263 384 220 339 3.92e-25 105
MsG0480020614.01.T01 MTR_4g056010 78.689 61 13 0 69 129 2 62 4.60e-25 98.6
MsG0480020614.01.T01 MTR_0129s0070 55.856 111 44 3 280 387 288 396 1.38e-24 104
MsG0480020614.01.T01 MTR_0831s0010 60.674 89 33 2 300 386 332 420 2.32e-24 103
MsG0480020614.01.T01 MTR_5g036250 61.250 80 31 0 300 379 24 103 3.66e-24 98.6
MsG0480020614.01.T01 MTR_5g066420 57.955 88 35 1 283 370 57 142 7.67e-24 96.7
MsG0480020614.01.T01 MTR_0054s0100 50.000 106 52 1 284 388 304 409 9.33e-24 102
MsG0480020614.01.T01 MTR_8g064790 57.471 87 36 1 302 387 251 337 2.64e-23 99.8
MsG0480020614.01.T01 MTR_5g022850 48.718 117 56 2 276 388 238 354 2.73e-23 100
MsG0480020614.01.T01 MTR_6g079810 47.458 118 54 3 269 385 351 461 1.00e-22 99.8
MsG0480020614.01.T01 MTR_0054s0090 53.261 92 42 1 298 388 316 407 1.79e-22 98.6
MsG0480020614.01.T01 MTR_4g028510 56.044 91 39 1 298 387 312 402 2.17e-22 99.0
MsG0480020614.01.T01 MTR_7g111700 55.814 86 38 0 303 388 281 366 2.24e-22 97.8
MsG0480020614.01.T01 MTR_4g028680 47.748 111 54 2 279 388 294 401 3.62e-22 97.4
MsG0480020614.01.T01 MTR_4g117550 42.282 149 66 4 252 387 232 373 4.29e-22 97.1
MsG0480020614.01.T01 MTR_5g097350 55.789 95 39 2 289 383 292 383 5.52e-22 96.7
MsG0480020614.01.T01 MTR_5g023970 56.180 89 37 2 301 387 108 196 6.00e-22 92.8
MsG0480020614.01.T01 MTR_8g064890 44.444 117 62 2 272 387 274 388 6.57e-22 96.7
MsG0480020614.01.T01 MTR_2g021800 54.444 90 40 1 299 388 329 417 7.19e-22 97.1
MsG0480020614.01.T01 MTR_0129s0120 52.727 110 47 3 280 386 288 395 9.19e-22 96.3
MsG0480020614.01.T01 MTR_4g130330 48.649 111 52 2 279 387 284 391 9.47e-22 96.3
MsG0480020614.01.T01 MTR_2g021920 57.831 83 34 1 301 383 188 269 2.41e-21 93.2
MsG0480020614.01.T01 MTR_6g004450 53.465 101 45 2 288 386 168 268 2.84e-21 92.8
MsG0480020614.01.T01 MTR_5g069390 46.491 114 58 2 278 388 305 418 2.86e-21 95.9
MsG0480020614.01.T01 MTR_5g097850 51.546 97 45 1 292 386 148 244 5.46e-21 91.7
MsG0480020614.01.T01 MTR_2g021950 56.471 85 36 1 299 383 310 393 5.77e-21 94.0
MsG0480020614.01.T01 MTR_7g023800 58.228 79 32 1 301 378 224 302 6.52e-21 92.4
MsG0480020614.01.T01 MTR_2g022020 54.118 85 38 1 299 383 33 116 7.14e-21 87.4
MsG0480020614.01.T01 MTR_2g022000 60.870 69 27 0 299 367 328 396 7.67e-21 94.0
MsG0480020614.01.T01 MTR_2g066170 39.098 133 69 3 257 386 262 385 3.54e-20 91.7
MsG0480020614.01.T01 MTR_5g097220 52.747 91 40 1 301 388 319 409 3.57e-20 91.7
MsG0480020614.01.T01 MTR_6g079730 58.209 67 28 0 298 364 60 126 3.62e-20 86.7
MsG0480020614.01.T01 MTR_0129s0050 51.000 100 45 3 289 387 312 408 3.85e-20 91.7
MsG0480020614.01.T01 MTR_6g478230 47.321 112 49 3 281 388 303 408 3.91e-20 91.7
MsG0480020614.01.T01 MTR_8g063440 50.000 90 44 1 299 387 294 383 4.46e-20 91.3
MsG0480020614.01.T01 MTR_6g079770 54.000 100 41 3 288 385 319 415 6.40e-20 91.3
MsG0480020614.01.T01 MTR_2g066200 46.226 106 53 3 284 386 283 387 7.41e-20 90.9
MsG0480020614.01.T01 MTR_7g069550 56.044 91 34 3 299 388 311 396 7.85e-20 90.9
MsG0480020614.01.T01 MTR_5g059430 52.041 98 43 3 292 385 327 424 9.44e-20 90.9
MsG0480020614.01.T01 MTR_4g028660 47.170 106 52 2 279 383 293 395 1.77e-19 89.7
MsG0480020614.01.T01 MTR_4g027450 47.170 106 52 2 279 383 293 395 1.77e-19 89.7
MsG0480020614.01.T01 MTR_5g074800 57.778 90 30 5 301 388 258 341 2.55e-19 88.6
MsG0480020614.01.T01 MTR_2g064950 60.494 81 29 3 300 378 301 380 3.26e-19 89.0
MsG0480020614.01.T01 MTR_5g064700 49.524 105 49 3 283 387 268 368 4.07e-19 88.2
MsG0480020614.01.T01 MTR_2g065840 43.704 135 61 5 257 386 264 388 4.42e-19 88.6
MsG0480020614.01.T01 MTR_6g086825 50.549 91 38 2 301 387 373 460 5.17e-19 89.0
MsG0480020614.01.T01 MTR_0134s0060 44.538 119 58 3 269 386 300 411 5.42e-19 88.6
MsG0480020614.01.T01 MTR_6g087620 52.747 91 39 2 289 377 191 279 6.48e-19 86.3
MsG0480020614.01.T01 MTR_7g032380 28.221 326 183 12 9 292 11 327 8.06e-19 87.4
MsG0480020614.01.T01 MTR_7g017130 47.664 107 53 2 283 388 294 398 8.19e-19 87.8
MsG0480020614.01.T01 MTR_7g079640 46.226 106 55 2 280 383 266 371 9.42e-19 87.4
MsG0480020614.01.T01 MTR_5g037680 44.762 105 51 3 283 382 279 381 1.06e-18 87.8
MsG0480020614.01.T01 MTR_5g043605 41.026 117 65 2 272 387 226 339 1.07e-18 87.0
MsG0480020614.01.T01 MTR_7g019250 60.000 70 28 0 301 370 349 418 1.45e-18 87.4
MsG0480020614.01.T01 MTR_8g033000 54.444 90 39 2 300 387 274 363 1.51e-18 86.7
MsG0480020614.01.T01 MTR_5g086590 54.878 82 32 2 292 371 161 239 1.54e-18 84.3
MsG0480020614.01.T01 MTR_8g467670 47.115 104 50 2 289 387 276 379 2.09e-18 86.7
MsG0480020614.01.T01 MTR_3g011120 48.315 89 44 1 283 371 277 363 3.75e-18 85.5
MsG0480020614.01.T01 MTR_6g080680 46.078 102 51 2 281 381 291 389 3.78e-18 85.9
MsG0480020614.01.T01 MTR_3g030620 47.674 86 42 2 302 385 96 180 4.80e-18 81.6
MsG0480020614.01.T01 MTR_6g079790 44.037 109 54 4 283 388 206 310 5.64e-18 84.3
MsG0480020614.01.T01 MTR_1g007450 55.882 68 30 0 301 368 309 376 8.20e-18 85.1
MsG0480020614.01.T01 MTR_5g097660 48.315 89 43 2 283 370 16 102 1.23e-17 78.6
MsG0480020614.01.T01 MTR_6g090260 42.157 102 54 2 283 381 159 258 1.56e-17 82.0
MsG0480020614.01.T01 MTR_5g096910 32.461 191 113 7 205 386 209 392 1.76e-17 83.6
MsG0480020614.01.T01 MTR_2g065860 51.685 89 40 2 301 386 299 387 2.32e-17 83.2
MsG0480020614.01.T01 MTR_5g068490 41.880 117 64 2 272 388 166 278 2.47e-17 81.6
MsG0480020614.01.T01 MTR_8g036970 49.451 91 45 1 278 367 213 303 2.74e-17 83.2
MsG0480020614.01.T01 MTR_4g014370 48.889 90 45 1 299 387 248 337 3.69e-17 82.4
MsG0480020614.01.T01 MTR_2g021770 42.727 110 58 3 281 388 302 408 5.19e-17 82.4
MsG0480020614.01.T01 MTR_2g066150 52.326 86 39 2 305 388 276 361 6.36e-17 81.6
MsG0480020614.01.T01 MTR_5g086780 53.731 67 31 0 298 364 162 228 7.03e-17 79.7
MsG0480020614.01.T01 MTR_4g014370 48.889 90 45 1 299 387 320 409 9.76e-17 81.6
MsG0480020614.01.T01 MTR_6g090180 52.381 84 39 1 301 383 351 434 9.82e-17 81.6
MsG0480020614.01.T01 MTR_8g012090 61.017 59 23 0 299 357 276 334 1.59e-16 80.5
MsG0480020614.01.T01 MTR_7g034110 25.632 277 172 6 9 259 11 279 2.06e-16 80.1
MsG0480020614.01.T01 MTR_3g018750 40.984 122 61 3 270 387 127 241 2.26e-16 78.2
MsG0480020614.01.T01 MTR_7g017170 42.857 119 53 3 283 388 294 410 2.67e-16 80.5
MsG0480020614.01.T01 MTR_5g072060 55.696 79 32 3 298 374 282 359 2.96e-16 80.9
MsG0480020614.01.T01 MTR_4g055820 82.222 45 8 0 299 343 314 358 3.37e-16 79.7
MsG0480020614.01.T01 MTR_5g097680 52.874 87 39 2 301 387 343 427 3.63e-16 80.1
MsG0480020614.01.T01 MTR_5g096630 47.059 102 40 4 298 387 315 414 4.30e-16 79.7
MsG0480020614.01.T01 MTR_8g032980 51.163 86 41 1 304 388 337 422 5.64e-16 79.3
MsG0480020614.01.T01 MTR_1g050308 52.747 91 39 2 300 388 260 348 6.22e-16 78.6
MsG0480020614.01.T01 MTR_4g102410 48.352 91 45 2 297 385 358 448 9.01e-16 79.0
MsG0480020614.01.T01 MTR_5g096920 39.796 98 55 3 292 385 53 150 1.91e-15 73.6
MsG0480020614.01.T01 MTR_8g464770 42.574 101 55 2 284 383 278 376 2.17e-15 77.4
MsG0480020614.01.T01 MTR_6g078010 48.235 85 43 1 298 381 245 329 2.82e-15 76.6
MsG0480020614.01.T01 MTR_4g028750 46.591 88 43 1 298 385 308 391 3.31e-15 77.0
MsG0480020614.01.T01 MTR_6g090250 51.429 70 34 0 298 367 334 403 4.08e-15 77.0
MsG0480020614.01.T01 MTR_8g085430 27.915 283 164 9 9 270 11 274 4.62e-15 75.9
MsG0480020614.01.T01 MTR_2g034700 48.000 100 49 2 284 380 270 369 4.70e-15 76.3
MsG0480020614.01.T01 MTR_5g092850 52.326 86 37 3 302 383 313 398 5.92e-15 76.3
MsG0480020614.01.T01 MTR_8g018110 50.000 86 42 1 303 387 312 397 9.57e-15 75.5
MsG0480020614.01.T01 MTR_8g033140 48.276 87 43 1 304 388 333 419 1.88e-14 74.7
MsG0480020614.01.T01 MTR_7g017040 35.766 137 81 2 259 388 263 399 2.99e-14 73.9
MsG0480020614.01.T01 MTR_5g076490 56.180 89 36 2 301 387 249 336 3.23e-14 73.6
MsG0480020614.01.T01 MTR_1g007410 44.643 112 56 3 270 379 291 398 5.31e-14 73.2
MsG0480020614.01.T01 MTR_8g013000 72.340 47 12 1 301 346 307 353 1.52e-13 72.0
MsG0480020614.01.T01 MTR_1g050305 53.425 73 29 2 301 368 33 105 1.55e-13 67.8
MsG0480020614.01.T01 MTR_8g046200 43.878 98 53 2 284 379 317 414 1.70e-13 72.0
MsG0480020614.01.T01 MTR_8g033110 48.864 88 42 3 302 387 329 415 1.82e-13 71.6
MsG0480020614.01.T01 MTR_1g050312 50.588 85 36 3 301 379 203 287 2.16e-13 70.5
MsG0480020614.01.T01 MTR_1g041245 34.646 127 70 3 9 131 11 128 2.40e-13 71.2
MsG0480020614.01.T01 MTR_7g033945 38.393 112 63 3 9 116 11 120 4.99e-13 67.4
MsG0480020614.01.T01 MTR_1g098180 38.679 106 52 4 292 384 258 363 8.59e-13 69.3
MsG0480020614.01.T01 MTR_8g046310 42.000 100 56 2 284 381 273 372 9.23e-13 69.3
MsG0480020614.01.T01 MTR_8g035690 48.837 86 42 2 303 386 217 302 9.36e-13 68.9
MsG0480020614.01.T01 MTR_5g074850 53.846 65 29 1 302 365 337 401 1.10e-12 70.1
MsG0480020614.01.T01 MTR_8g046220 40.196 102 59 2 284 383 301 402 2.26e-12 68.6
MsG0480020614.01.T01 MTR_6g009350 45.000 80 36 2 280 351 116 195 2.61e-12 65.9
MsG0480020614.01.T01 MTR_5g091140 46.078 102 47 4 283 378 312 411 2.87e-12 68.2
MsG0480020614.01.T01 MTR_5g092860 50.000 86 36 4 282 365 270 350 2.92e-12 67.8
MsG0480020614.01.T01 MTR_1g053510 36.111 108 68 1 276 382 294 401 4.33e-12 67.4
MsG0480020614.01.T01 MTR_8g039500 60.377 53 21 0 305 357 294 346 6.03e-12 66.6
MsG0480020614.01.T01 MTR_5g098950 64.583 48 17 0 299 346 227 274 6.04e-12 65.9
MsG0480020614.01.T01 MTR_7g033915 38.393 112 63 3 9 116 11 120 6.13e-12 67.0
MsG0480020614.01.T01 MTR_1g007430 67.391 46 15 0 301 346 279 324 6.56e-12 66.6
MsG0480020614.01.T01 MTR_8g033090 46.512 86 44 2 303 387 328 412 1.71e-11 65.9
MsG0480020614.01.T01 MTR_8g063310 42.857 84 45 2 299 379 306 389 2.07e-11 65.5
MsG0480020614.01.T01 MTR_1g090890 63.636 44 13 1 231 271 29 72 2.95e-11 60.8
MsG0480020614.01.T01 MTR_8g090195 55.357 56 25 0 307 362 58 113 3.40e-11 60.5
MsG0480020614.01.T01 MTR_5g075370 50.769 65 31 1 302 365 313 377 3.51e-11 65.5
MsG0480020614.01.T01 MTR_1g115245 29.762 168 99 6 4 159 21 181 4.45e-11 63.9
MsG0480020614.01.T01 MTR_3g108560 24.771 327 175 10 6 270 17 334 5.13e-11 64.3
MsG0480020614.01.T01 MTR_7g034115 26.648 349 186 12 9 292 11 354 6.13e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020614.01.T01 AT3G59000 32.035 231 126 7 9 227 2 213 5.06e-18 84.7
MsG0480020614.01.T01 AT4G13960 39.437 142 73 4 9 140 2 140 6.13e-15 76.6
MsG0480020614.01.T01 AT4G13960 39.437 142 73 4 9 140 2 140 6.13e-15 76.6
MsG0480020614.01.T01 AT5G38392 33.702 181 105 6 9 177 2 179 4.42e-14 71.2
MsG0480020614.01.T01 AT1G55660 29.762 252 127 9 9 228 53 286 1.14e-13 72.0
MsG0480020614.01.T01 AT1G55660 29.762 252 127 9 9 228 53 286 3.67e-13 71.2
MsG0480020614.01.T01 AT3G03040 37.600 125 68 2 9 123 2 126 1.20e-12 69.7
MsG0480020614.01.T01 AT3G59190 39.655 116 60 4 9 114 12 127 2.00e-12 68.6
MsG0480020614.01.T01 AT3G03030 40.517 116 59 3 9 114 2 117 2.72e-12 67.8
MsG0480020614.01.T01 AT3G59190 39.655 116 60 4 9 114 12 127 3.28e-12 68.2
MsG0480020614.01.T01 AT3G59000 38.129 139 69 6 9 131 2 139 3.58e-12 68.2
MsG0480020614.01.T01 AT5G38570 28.218 202 121 5 9 189 2 200 6.48e-12 67.0
MsG0480020614.01.T01 AT3G03030 40.517 116 59 3 9 114 2 117 6.60e-12 67.4
MsG0480020614.01.T01 AT5G56440 28.205 234 152 6 9 228 2 233 8.36e-12 66.6
MsG0480020614.01.T01 AT4G00315 28.814 236 148 8 9 227 2 234 9.01e-12 66.6
MsG0480020614.01.T01 AT5G38396 35.526 152 87 4 9 150 2 152 1.92e-11 65.9

Find 60 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTTTCTATTCACTTTC+TGG 0.014456 4:-44771554 MsG0480020614.01.T01:CDS
CTCATTGCATTTGAATTTAA+AGG 0.125528 4:-44773904 MsG0480020614.01.T01:CDS
TACTTATCACATATCAATTT+TGG 0.133436 4:-44770860 MsG0480020614.01.T01:CDS
ACTTAAGGATCTTGCAATTA+TGG 0.162434 4:-44774337 MsG0480020614.01.T01:intron
ATTCACAAATTTGATTTCTT+TGG 0.190993 4:+44775257 None:intergenic
AGTGAAGAACTTGGTGTTAA+AGG 0.239392 4:-44770685 MsG0480020614.01.T01:CDS
ATTGCAAGATCCTTAAGTTT+TGG 0.271802 4:+44774342 None:intergenic
ACAGATCCAAGTCAAGTTTC+TGG 0.309423 4:+44775121 None:intergenic
AAGAAAAGCCTTGTTTCAAT+TGG 0.329299 4:-44770634 MsG0480020614.01.T01:CDS
GTTTCCAACCTCATTTCTTC+GGG 0.355956 4:+44773975 None:intergenic
AGTTTCCAACCTCATTTCTT+CGG 0.365062 4:+44773974 None:intergenic
ATGAGGTTGGAAACTCTAGA+TGG 0.416736 4:-44773966 MsG0480020614.01.T01:CDS
AAAGTGAAGGTTGGGAATCT+TGG 0.417455 4:+44775311 None:intergenic
TGGACAAAACTCTTCGTTGT+TGG 0.424470 4:-44770814 MsG0480020614.01.T01:CDS
ACAGAATGCTCCAAAACTTA+AGG 0.424972 4:-44774352 MsG0480020614.01.T01:CDS
AAAAGCCTTGTTTCAATTGG+AGG 0.435500 4:-44770631 MsG0480020614.01.T01:CDS
TTTATTGGAGTGGGGAAGAA+TGG 0.440439 4:-44770769 MsG0480020614.01.T01:CDS
GGTAATTGAAAGTGAAGGTT+GGG 0.443422 4:+44775303 None:intergenic
GTATACAAATTGTTAAAATC+CGG 0.478212 4:+44774643 None:intergenic
AAATTCAAATGCAATGAGAC+TGG 0.478300 4:+44773909 None:intergenic
TTGATTTCTTTGGACAACTC+AGG 0.483223 4:+44775267 None:intergenic
TCTATTCACTTTCTGGTGAG+AGG 0.486761 4:-44771547 MsG0480020614.01.T01:intron
TCTTTGCATTTGTAAGCGTC+CGG 0.498367 4:-44774662 MsG0480020614.01.T01:CDS
CAAGGTCCAGAAACTTGACT+TGG 0.499109 4:-44775127 MsG0480020614.01.T01:CDS
AATTTGTATACACTCTTGAA+AGG 0.500652 4:-44774631 MsG0480020614.01.T01:CDS
AACTCGGCGTGAAGGAATCA+TGG 0.502386 4:-44770834 MsG0480020614.01.T01:CDS
TTCAAAACATAAAACTGAGT+TGG 0.511274 4:-44773879 MsG0480020614.01.T01:CDS
TGATTTCTTTGGACAACTCA+GGG 0.514750 4:+44775268 None:intergenic
AACTCAGGGTCTGAAATCTC+TGG 0.516045 4:+44775282 None:intergenic
AATCAATTCCCGAAGAAATG+AGG 0.525787 4:-44773983 MsG0480020614.01.T01:CDS
TGTACACATGTGGGTTTCAA+AGG 0.528762 4:-44775160 MsG0480020614.01.T01:CDS
AAACGCTCAATGTAGGAGAA+TGG 0.528987 4:+44770790 None:intergenic
CATGTGTTCTATCCACAAGA+TGG 0.542093 4:-44775347 MsG0480020614.01.T01:CDS
TTCAAAGGCATTAGATCTCA+AGG 0.542872 4:-44775145 MsG0480020614.01.T01:CDS
TCCAATAAAACGCTCAATGT+AGG 0.544193 4:+44770783 None:intergenic
TGGTAATTGAAAGTGAAGGT+TGG 0.551378 4:+44775302 None:intergenic
CTAAGTCTTGATAGCAACAA+AGG 0.551526 4:-44775198 MsG0480020614.01.T01:CDS
TGTTATGCAGTTTCTCAGCA+TGG 0.553413 4:-44774478 MsG0480020614.01.T01:intron
ACTTTCTAATGTCAAAACAT+TGG 0.567332 4:-44774608 MsG0480020614.01.T01:CDS
AATTCCCGAAGAAATGAGGT+TGG 0.567804 4:-44773979 MsG0480020614.01.T01:CDS
GCATATCGACTCCCATCTTG+TGG 0.572297 4:+44775335 None:intergenic
TTTGGATGAACTCGGCGTGA+AGG 0.578558 4:-44770842 MsG0480020614.01.T01:CDS
ATGTGTTCTATCCACAAGAT+GGG 0.579779 4:-44775346 MsG0480020614.01.T01:CDS
TCACACGTGAAAAGCCTAAG+TGG 0.580063 4:+44775076 None:intergenic
AGACATGCCGGAGTTACTGA+TGG 0.583941 4:+44773937 None:intergenic
AAATATCTGAGAATTGCAGT+TGG 0.586019 4:-44774395 MsG0480020614.01.T01:CDS
ATAATAAATTGTGAAAAGTG+AGG 0.589470 4:+44774430 None:intergenic
GGTGGAGCCATCAGTAACTC+CGG 0.595318 4:-44773944 MsG0480020614.01.T01:CDS
AATGTCAAAACATTGGCTCT+CGG 0.596249 4:-44774601 MsG0480020614.01.T01:CDS
TTATTCCTCCAATTGAAACA+AGG 0.603968 4:+44770626 None:intergenic
ACACAAAATAGTGAAGAACT+TGG 0.605774 4:-44770694 MsG0480020614.01.T01:CDS
TGAGGTTGGAAACTCTAGAT+GGG 0.616468 4:-44773965 MsG0480020614.01.T01:CDS
AAGAGCAGCTTCATCAACAG+TGG 0.644416 4:+44774681 None:intergenic
GCCACATGATGTACACATGT+GGG 0.650684 4:-44775169 MsG0480020614.01.T01:CDS
GGTTGGAAACTCTAGATGGG+TGG 0.653900 4:-44773962 MsG0480020614.01.T01:CDS
ACATGTGTACATCATGTGGC+TGG 0.656362 4:+44775172 None:intergenic
ACCCACATGTGTACATCATG+TGG 0.672342 4:+44775168 None:intergenic
AGCCACATGATGTACACATG+TGG 0.685172 4:-44775170 MsG0480020614.01.T01:CDS
TCTCTGGTAATTGAAAGTGA+AGG 0.696256 4:+44775298 None:intergenic
TATGCAGTTTCTCAGCATGG+AGG 0.703511 4:-44774475 MsG0480020614.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATTAATTAAATTGTTTAT+CGG + Chr4:44771883-44771902 None:intergenic 10.0%
!! TAATTAGTTAAATAAATATC+TGG + Chr4:44772820-44772839 None:intergenic 10.0%
!! TTTAAAAGATGAAATATAAT+AGG - Chr4:44771793-44771812 MsG0480020614.01.T01:intron 10.0%
!!! GAAAATTCTAAAATATTTTT+TGG - Chr4:44772037-44772056 MsG0480020614.01.T01:intron 10.0%
!!! TAAAAAGTTAATATTTTATG+AGG - Chr4:44773798-44773817 MsG0480020614.01.T01:intron 10.0%
!! AAATATTTAACCAGAATTTA+AGG - Chr4:44773831-44773850 MsG0480020614.01.T01:intron 15.0%
!! AAATTATCCTTATTAACTAT+TGG + Chr4:44773198-44773217 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - Chr4:44773197-44773216 MsG0480020614.01.T01:intron 15.0%
!! AATCAATAAAATCAAAGAAA+GGG + Chr4:44774594-44774613 None:intergenic 15.0%
!! ATATTCATTAAAAAGAAAGA+TGG - Chr4:44775323-44775342 MsG0480020614.01.T01:CDS 15.0%
!! ATCTGGATTAATTAAATAAA+TGG + Chr4:44772803-44772822 None:intergenic 15.0%
!! ATGTAATTAAAAAATTTGAG+AGG + Chr4:44772595-44772614 None:intergenic 15.0%
!! TATACATTAGTTAAAAAGTA+TGG + Chr4:44773391-44773410 None:intergenic 15.0%
!! TCAAAAAAAGAAATATCATA+AGG + Chr4:44774211-44774230 None:intergenic 15.0%
!! TCCACAAAAAAAAAAAAAAA+AGG - Chr4:44773913-44773932 MsG0480020614.01.T01:CDS 15.0%
!!! ACCTTTTTTTTTTTTTTTTG+TGG + Chr4:44773917-44773936 None:intergenic 15.0%
!!! ACTTAGTTTTCTTATATTTT+CGG + Chr4:44770853-44770872 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + Chr4:44773174-44773193 None:intergenic 15.0%
!! AAACTAACCAATAGTTAATA+AGG - Chr4:44773188-44773207 MsG0480020614.01.T01:intron 20.0%
!! AAGATTGTTTAAGAAATCAA+AGG + Chr4:44774111-44774130 None:intergenic 20.0%
!! AAGTAAAATAGTTTGAAAGA+AGG + Chr4:44771957-44771976 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + Chr4:44773111-44773130 None:intergenic 20.0%
!! AGTATATAATAAACTCTGTA+TGG + Chr4:44772371-44772390 None:intergenic 20.0%
!! ATAATAAATTGTGAAAAGTG+AGG + Chr4:44771638-44771657 None:intergenic 20.0%
!! ATAGATATAAAAAATGTGAG+TGG - Chr4:44773726-44773745 MsG0480020614.01.T01:intron 20.0%
!! CAATCAATAAAATCAAAGAA+AGG + Chr4:44774595-44774614 None:intergenic 20.0%
!! GTATACAAATTGTTAAAATC+CGG + Chr4:44771425-44771444 None:intergenic 20.0%
!! GTTTCATTATAAGATTTAGA+TGG + Chr4:44773346-44773365 None:intergenic 20.0%
!! TAATTGAAGAAAAGGTAATT+AGG - Chr4:44774176-44774195 MsG0480020614.01.T01:intron 20.0%
!! TATATATACAATTACATTCG+TGG - Chr4:44772528-44772547 MsG0480020614.01.T01:intron 20.0%
!! TGGATTAATTAAATAAATGG+TGG + Chr4:44772800-44772819 None:intergenic 20.0%
!!! AATGATTTTAAAGGAAGTTT+TGG + Chr4:44774331-44774350 None:intergenic 20.0%
!!! ATATTTTAGAATTTTCCAAC+TGG + Chr4:44772033-44772052 None:intergenic 20.0%
!!! ATTCACAAATTTGATTTCTT+TGG + Chr4:44770811-44770830 None:intergenic 20.0%
!!! CTCATTTTGAAACAAATTTT+TGG + Chr4:44773073-44773092 None:intergenic 20.0%
!!! CTTAACAATGATACAATTTT+GGG + Chr4:44773002-44773021 None:intergenic 20.0%
!!! GTACATTTTTGTCAAATAAA+TGG - Chr4:44774803-44774822 MsG0480020614.01.T01:intron 20.0%
!!! GTATCTTAATATTTGTTAGT+AGG - Chr4:44772414-44772433 MsG0480020614.01.T01:intron 20.0%
!!! TACTTATCACATATCAATTT+TGG - Chr4:44775205-44775224 MsG0480020614.01.T01:CDS 20.0%
!!! TCTTAACAATGATACAATTT+TGG + Chr4:44773003-44773022 None:intergenic 20.0%
!!! TGATCTAATAATTTTCTATC+TGG - Chr4:44771150-44771169 MsG0480020614.01.T01:intron 20.0%
!!! TTCTATTGTTGATTTTTCAT+TGG - Chr4:44771332-44771351 MsG0480020614.01.T01:intron 20.0%
!!! TTTGGATTTTGTTACATTAT+AGG + Chr4:44772868-44772887 None:intergenic 20.0%
! AACAAAAAACACTTGTATTC+TGG - Chr4:44774646-44774665 MsG0480020614.01.T01:CDS 25.0%
! AAGAATATAAATGGTACACA+TGG - Chr4:44773691-44773710 MsG0480020614.01.T01:intron 25.0%
! AAGATGACATTAAGGTTATT+AGG - Chr4:44774777-44774796 MsG0480020614.01.T01:intron 25.0%
! AAGTAGGCATATATAAAGTA+AGG + Chr4:44771260-44771279 None:intergenic 25.0%
! AATAAACAAAAGATCAGTGA+AGG - Chr4:44773979-44773998 MsG0480020614.01.T01:CDS 25.0%
! AATGAGAATAGAATTGCATA+TGG + Chr4:44771558-44771577 None:intergenic 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + Chr4:44773231-44773250 None:intergenic 25.0%
! AATTTGTATACACTCTTGAA+AGG - Chr4:44771434-44771453 MsG0480020614.01.T01:intron 25.0%
! ACAAGTCTAGAAAGAAAATT+GGG + Chr4:44775120-44775139 None:intergenic 25.0%
! ACTTTCTAATGTCAAAACAT+TGG - Chr4:44771457-44771476 MsG0480020614.01.T01:intron 25.0%
! AGTTTGAAAGAAGGTTAAAT+TGG + Chr4:44771948-44771967 None:intergenic 25.0%
! ATGAGAATAGAATTGCATAT+GGG + Chr4:44771557-44771576 None:intergenic 25.0%
! ATGTGTACCATTTATATTCT+TGG + Chr4:44773692-44773711 None:intergenic 25.0%
! ATTTAGATATGAAGTTAGTG+CGG + Chr4:44774423-44774442 None:intergenic 25.0%
! ATTTCAATATGCCTAAATGT+TGG - Chr4:44774939-44774958 MsG0480020614.01.T01:intron 25.0%
! CTATTTACTATATATCCAGT+TGG - Chr4:44772015-44772034 MsG0480020614.01.T01:intron 25.0%
! CTCATTGCATTTGAATTTAA+AGG - Chr4:44772161-44772180 MsG0480020614.01.T01:intron 25.0%
! GTTTGAAAGAAGGTTAAATT+GGG + Chr4:44771947-44771966 None:intergenic 25.0%
! GTTTGTAAAGTCATATTTCT+AGG + Chr4:44771360-44771379 None:intergenic 25.0%
! TACCATTTATATTCTTGGAT+GGG + Chr4:44773687-44773706 None:intergenic 25.0%
! TACTTTATATATGCCTACTT+CGG - Chr4:44771260-44771279 MsG0480020614.01.T01:intron 25.0%
! TTCAAAACATAAAACTGAGT+TGG - Chr4:44772186-44772205 MsG0480020614.01.T01:intron 25.0%
!! AATCGCTTCAATGATTTTAA+AGG + Chr4:44774340-44774359 None:intergenic 25.0%
!! ATATCAATTTTGGATGAACT+CGG - Chr4:44775215-44775234 MsG0480020614.01.T01:CDS 25.0%
!! CTTTTCTTCAATTACAGATT+CGG + Chr4:44774170-44774189 None:intergenic 25.0%
!! TATAAGACTCTTTTGTTGAT+AGG + Chr4:44770695-44770714 None:intergenic 25.0%
!! TTTTGCAAGAATGAAATCAA+AGG + Chr4:44774076-44774095 None:intergenic 25.0%
!! TTTTGTTGCATTATTTGTGT+TGG + Chr4:44772966-44772985 None:intergenic 25.0%
!!! ACTTGAACATGTTTTTGAAA+CGG - Chr4:44773552-44773571 MsG0480020614.01.T01:intron 25.0%
!!! TCTGTTTTAATGAAAAGAGT+TGG - Chr4:44772392-44772411 MsG0480020614.01.T01:intron 25.0%
AAATATCCTATCAACCCTTA+TGG - Chr4:44774876-44774895 MsG0480020614.01.T01:intron 30.0%
AAATATCTGAGAATTGCAGT+TGG - Chr4:44771670-44771689 MsG0480020614.01.T01:intron 30.0%
AAATTCAAATGCAATGAGAC+TGG + Chr4:44772159-44772178 None:intergenic 30.0%
AACCCATCCAAGAATATAAA+TGG - Chr4:44773682-44773701 MsG0480020614.01.T01:intron 30.0%
AAGACTTGGCAAAATATACA+TGG - Chr4:44771842-44771861 MsG0480020614.01.T01:intron 30.0%
AATATCCTATCAACCCTTAT+GGG - Chr4:44774877-44774896 MsG0480020614.01.T01:intron 30.0%
ACACAAAATAGTGAAGAACT+TGG - Chr4:44775371-44775390 MsG0480020614.01.T01:CDS 30.0%
ACACTATAAATCTCCCATAA+GGG + Chr4:44774893-44774912 None:intergenic 30.0%
ACTTAAGGATCTTGCAATTA+TGG - Chr4:44771728-44771747 MsG0480020614.01.T01:intron 30.0%
AGATGAAGAATCTTTAGTGA+CGG + Chr4:44771085-44771104 None:intergenic 30.0%
AGGAATGACCTTAAATTCAT+TGG + Chr4:44774682-44774701 None:intergenic 30.0%
AGTAGAAAAAAGTTTACGCA+TGG - Chr4:44772288-44772307 MsG0480020614.01.T01:intron 30.0%
ATAGAAAGAACTTCAAGTGA+AGG + Chr4:44771318-44771337 None:intergenic 30.0%
ATAGTGTAAGATGTAACTCT+TGG - Chr4:44774906-44774925 MsG0480020614.01.T01:intron 30.0%
ATATAATAGGCTCAAAAGTC+TGG - Chr4:44771806-44771825 MsG0480020614.01.T01:intron 30.0%
ATATTCCATTCATGCACAAT+CGG + Chr4:44774982-44775001 None:intergenic 30.0%
CACAAGTCTAGAAAGAAAAT+TGG + Chr4:44775121-44775140 None:intergenic 30.0%
CCATATTCAAGATGACATTA+AGG - Chr4:44774769-44774788 MsG0480020614.01.T01:intron 30.0%
CCTTAATGTCATCTTGAATA+TGG + Chr4:44774772-44774791 None:intergenic 30.0%
CGAATCTGTAATTGAAGAAA+AGG - Chr4:44774168-44774187 MsG0480020614.01.T01:intron 30.0%
GACATATAAAGTTGTGTTGA+TGG + Chr4:44772499-44772518 None:intergenic 30.0%
GTACCATTTATATTCTTGGA+TGG + Chr4:44773688-44773707 None:intergenic 30.0%
GTAGAAAAAAGTTTACGCAT+GGG - Chr4:44772289-44772308 MsG0480020614.01.T01:intron 30.0%
GTGAGAGGTTATATAATGAT+GGG + Chr4:44773875-44773894 None:intergenic 30.0%
GTTACAACTTACAAGAAGTT+TGG - Chr4:44774038-44774057 MsG0480020614.01.T01:intron 30.0%
TACACTATAAATCTCCCATA+AGG + Chr4:44774894-44774913 None:intergenic 30.0%
TACATCTCTCATCTTATATC+AGG - Chr4:44774462-44774481 MsG0480020614.01.T01:CDS 30.0%
TAGAAAAAAGTTTACGCATG+GGG - Chr4:44772290-44772309 MsG0480020614.01.T01:intron 30.0%
TAGAAAGAACTTCAAGTGAA+GGG + Chr4:44771317-44771336 None:intergenic 30.0%
TCTCTTCAATAAGTGAAAAG+AGG + Chr4:44771232-44771251 None:intergenic 30.0%
TGAAAAGAAGAATTGAGTGT+TGG + Chr4:44771052-44771071 None:intergenic 30.0%
TGACAAATCATTACCCAATT+GGG - Chr4:44772768-44772787 MsG0480020614.01.T01:intron 30.0%
TGATAGGATATTTCATTCCA+TGG + Chr4:44774869-44774888 None:intergenic 30.0%
TGTGAGAGGTTATATAATGA+TGG + Chr4:44773876-44773895 None:intergenic 30.0%
TTATTCCTCCAATTGAAACA+AGG + Chr4:44775442-44775461 None:intergenic 30.0%
! AAGAATGAAATCAAAGGTGT+TGG + Chr4:44774070-44774089 None:intergenic 30.0%
! AATGTCTAGAACAATAAGAG+AGG + Chr4:44772468-44772487 None:intergenic 30.0%
! ACCTTAAATTCATTGGTAGT+TGG + Chr4:44774675-44774694 None:intergenic 30.0%
! AGTGGCAATAAGATTTTTCA+TGG + Chr4:44770974-44770993 None:intergenic 30.0%
! ATTGCAAGATCCTTAAGTTT+TGG + Chr4:44771726-44771745 None:intergenic 30.0%
! ATTTGTTAGTAGGATGTTGT+GGG - Chr4:44772424-44772443 MsG0480020614.01.T01:intron 30.0%
! ATTTTCTTTCTAGACTTGTG+AGG - Chr4:44775121-44775140 MsG0480020614.01.T01:CDS 30.0%
! CCTTAAATTCATTGGTAGTT+GGG + Chr4:44774674-44774693 None:intergenic 30.0%
! GAAAAATCTTATTGCCACTT+AGG - Chr4:44770975-44770994 MsG0480020614.01.T01:intron 30.0%
! TATTTGTTAGTAGGATGTTG+TGG - Chr4:44772423-44772442 MsG0480020614.01.T01:intron 30.0%
! TCAGTTGATACCTTAAATTC+TGG + Chr4:44773844-44773863 None:intergenic 30.0%
! TGCGGTTACTAATAGAATTT+TGG + Chr4:44772886-44772905 None:intergenic 30.0%
! TTTTGTCAAATAAATGGTCG+AGG - Chr4:44774809-44774828 MsG0480020614.01.T01:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG - Chr4:44773279-44773298 MsG0480020614.01.T01:intron 30.0%
!! AAGAAAAGCCTTGTTTCAAT+TGG - Chr4:44775431-44775450 MsG0480020614.01.T01:CDS 30.0%
!! ACAATTTTGGGTAAACATAC+TGG + Chr4:44772990-44773009 None:intergenic 30.0%
!! TATAAAGTTGTGTTGATGGT+CGG + Chr4:44772495-44772514 None:intergenic 30.0%
!! TTTTCCTCTTGAAATGGATT+TGG + Chr4:44774571-44774590 None:intergenic 30.0%
!!! CAAGTGTTTTTTGTTTTTCG+AGG + Chr4:44774641-44774660 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + Chr4:44773278-44773297 None:intergenic 30.0%
AAAAGAAGTTCCTCTAGATG+TGG + Chr4:44771180-44771199 None:intergenic 35.0%
AAATTGGGATATATGTCCGA+AGG + Chr4:44775105-44775124 None:intergenic 35.0%
AATCAATTCCCGAAGAAATG+AGG - Chr4:44772082-44772101 MsG0480020614.01.T01:intron 35.0%
ACAGAATGCTCCAAAACTTA+AGG - Chr4:44771713-44771732 MsG0480020614.01.T01:intron 35.0%
ACAGGTAGGTTTCATATTCA+CGG - Chr4:44774010-44774029 MsG0480020614.01.T01:intron 35.0%
AGAAAGAACTTCAAGTGAAG+GGG + Chr4:44771316-44771335 None:intergenic 35.0%
AGTTTCCAACCTCATTTCTT+CGG + Chr4:44772094-44772113 None:intergenic 35.0%
ATCACAATCTCTTGTTGAGA+TGG - Chr4:44774144-44774163 MsG0480020614.01.T01:intron 35.0%
ATGTGTTCTATCCACAAGAT+GGG - Chr4:44770719-44770738 MsG0480020614.01.T01:CDS 35.0%
CAACACTTAATAACCGAAGT+AGG + Chr4:44771276-44771295 None:intergenic 35.0%
CCCAACTACCAATGAATTTA+AGG - Chr4:44774671-44774690 MsG0480020614.01.T01:CDS 35.0%
CTTACCAAATCCATTTCAAG+AGG - Chr4:44774564-44774583 MsG0480020614.01.T01:intron 35.0%
GAACTATCAGTCCAACATTT+AGG + Chr4:44774953-44774972 None:intergenic 35.0%
GCATGAATGGAATATGTCAT+TGG - Chr4:44774987-44775006 MsG0480020614.01.T01:intron 35.0%
GGAGGGAGTAAGAATTAATA+AGG - Chr4:44773300-44773319 MsG0480020614.01.T01:intron 35.0%
GGTAATTGAAAGTGAAGGTT+GGG + Chr4:44770765-44770784 None:intergenic 35.0%
GTAGTGTGCTGAGTATTAAT+TGG + Chr4:44773149-44773168 None:intergenic 35.0%
GTGACAAATCATTACCCAAT+TGG - Chr4:44772767-44772786 MsG0480020614.01.T01:intron 35.0%
TATACCCATAGACATACCTT+CGG - Chr4:44775086-44775105 MsG0480020614.01.T01:CDS 35.0%
TCCAATAAAACGCTCAATGT+AGG + Chr4:44775285-44775304 None:intergenic 35.0%
TCTCTGGTAATTGAAAGTGA+AGG + Chr4:44770770-44770789 None:intergenic 35.0%
TGAAAGAAGGTTAAATTGGG+AGG + Chr4:44771944-44771963 None:intergenic 35.0%
TGAATGGAATATGTCATTGG+TGG - Chr4:44774990-44775009 MsG0480020614.01.T01:intron 35.0%
TGATTTCTTTGGACAACTCA+GGG + Chr4:44770800-44770819 None:intergenic 35.0%
TGCTCTTTCTATTCACTTTC+TGG - Chr4:44774511-44774530 MsG0480020614.01.T01:intron 35.0%
TGGTAATTGAAAGTGAAGGT+TGG + Chr4:44770766-44770785 None:intergenic 35.0%
TGTAAGTCACTCAAGTAAGT+TGG - Chr4:44772225-44772244 MsG0480020614.01.T01:intron 35.0%
TGTGAGTGGAAAATACTTGA+AGG - Chr4:44773740-44773759 MsG0480020614.01.T01:intron 35.0%
TGTGCTGAGTATTAATTGGA+GGG + Chr4:44773145-44773164 None:intergenic 35.0%
TTGATTTCTTTGGACAACTC+AGG + Chr4:44770801-44770820 None:intergenic 35.0%
TTGCATATGGGTGACTAATT+TGG + Chr4:44771545-44771564 None:intergenic 35.0%
! AAAGGGTTTTCCTCTTGAAA+TGG + Chr4:44774577-44774596 None:intergenic 35.0%
! AGACACTTGGTGGTATTTAA+TGG - Chr4:44775144-44775163 MsG0480020614.01.T01:CDS 35.0%
! CTAAGTCTTGATAGCAACAA+AGG - Chr4:44770867-44770886 MsG0480020614.01.T01:CDS 35.0%
! GCATTATTTGTGTTGGTACT+TGG + Chr4:44772959-44772978 None:intergenic 35.0%
! GTGGTATTTAATGGATCAAC+TGG - Chr4:44775153-44775172 MsG0480020614.01.T01:CDS 35.0%
! TCCTACATTGAGCGTTTTAT+TGG - Chr4:44775281-44775300 MsG0480020614.01.T01:CDS 35.0%
!! AAAAGCCTTGTTTCAATTGG+AGG - Chr4:44775434-44775453 MsG0480020614.01.T01:CDS 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + Chr4:44773047-44773066 None:intergenic 35.0%
!! AAGTGAAAAGAGGTGTTGAT+AGG + Chr4:44771222-44771241 None:intergenic 35.0%
!! AATGTCAAAACATTGGCTCT+CGG - Chr4:44771464-44771483 MsG0480020614.01.T01:intron 35.0%
!! AGTGAAGAACTTGGTGTTAA+AGG - Chr4:44775380-44775399 MsG0480020614.01.T01:CDS 35.0%
!! ATTGAGCGTTTTATTGGAGT+GGG - Chr4:44775287-44775306 MsG0480020614.01.T01:CDS 35.0%
!! TTATATTTTCGGTGCGTCTT+AGG + Chr4:44770842-44770861 None:intergenic 35.0%
!! TTCAAAGGCATTAGATCTCA+AGG - Chr4:44770920-44770939 MsG0480020614.01.T01:intron 35.0%
!! TTTTAAAGGAAGTTTTGGCC+TGG + Chr4:44774326-44774345 None:intergenic 35.0%
!!! GAACATGTTTTTGAAACGGA+TGG - Chr4:44773556-44773575 MsG0480020614.01.T01:intron 35.0%
!!! TTTTTCGAGGCAAAGAATTC+CGG + Chr4:44774628-44774647 None:intergenic 35.0%
AAACGCTCAATGTAGGAGAA+TGG + Chr4:44775278-44775297 None:intergenic 40.0%
AAAGTGAAGGTTGGGAATCT+TGG + Chr4:44770757-44770776 None:intergenic 40.0%
AATGACCGATTGTGCATGAA+TGG - Chr4:44774974-44774993 MsG0480020614.01.T01:intron 40.0%
AATTCCCGAAGAAATGAGGT+TGG - Chr4:44772086-44772105 MsG0480020614.01.T01:intron 40.0%
ACAGATCCAAGTCAAGTTTC+TGG + Chr4:44770947-44770966 None:intergenic 40.0%
AGAAATCCTCCTTACTCGTA+TGG - Chr4:44772317-44772336 MsG0480020614.01.T01:intron 40.0%
ATGAGGTTGGAAACTCTAGA+TGG - Chr4:44772099-44772118 MsG0480020614.01.T01:intron 40.0%
CATGTGTTCTATCCACAAGA+TGG - Chr4:44770718-44770737 MsG0480020614.01.T01:CDS 40.0%
GAAATCCTCCTTACTCGTAT+GGG - Chr4:44772318-44772337 MsG0480020614.01.T01:intron 40.0%
GACACCAAAAATGCTTATCC+CGG + Chr4:44775030-44775049 None:intergenic 40.0%
GATAGGTAATGCAAAGGTCT+CGG + Chr4:44771205-44771224 None:intergenic 40.0%
GTGCATTAGCATATGTGAAG+TGG - Chr4:44773526-44773545 MsG0480020614.01.T01:intron 40.0%
GTGTAAGATGTAACTCTTGG+AGG - Chr4:44774909-44774928 MsG0480020614.01.T01:intron 40.0%
GTGTGCTGAGTATTAATTGG+AGG + Chr4:44773146-44773165 None:intergenic 40.0%
GTTTCCAACCTCATTTCTTC+GGG + Chr4:44772093-44772112 None:intergenic 40.0%
TAGAATACGCCACAGTTTCA+CGG + Chr4:44771108-44771127 None:intergenic 40.0%
TCGACTTTACTTCATGGATC+TGG - Chr4:44774740-44774759 MsG0480020614.01.T01:intron 40.0%
TCTTCAGATAAGAGAGACCA+TGG + Chr4:44774379-44774398 None:intergenic 40.0%
TCTTTGCATTTGTAAGCGTC+CGG - Chr4:44771403-44771422 MsG0480020614.01.T01:intron 40.0%
TGAGGTTGGAAACTCTAGAT+GGG - Chr4:44772100-44772119 MsG0480020614.01.T01:intron 40.0%
TGGACAAAACTCTTCGTTGT+TGG - Chr4:44775251-44775270 MsG0480020614.01.T01:CDS 40.0%
TGTACACATGTGGGTTTCAA+AGG - Chr4:44770905-44770924 MsG0480020614.01.T01:intron 40.0%
TGTTATGCAGTTTCTCAGCA+TGG - Chr4:44771587-44771606 MsG0480020614.01.T01:intron 40.0%
TTTATTGGAGTGGGGAAGAA+TGG - Chr4:44775296-44775315 MsG0480020614.01.T01:CDS 40.0%
! AAGACCGGGATAAGCATTTT+TGG - Chr4:44775023-44775042 MsG0480020614.01.T01:intron 40.0%
! AATCTCCCATAAGGGTTGAT+AGG + Chr4:44774885-44774904 None:intergenic 40.0%
! ACTCGTGGTGTTAAAATTGC+GGG - Chr4:44771015-44771034 MsG0480020614.01.T01:intron 40.0%
! ATCTGACCAAGGTATCTGAT+CGG - Chr4:44772905-44772924 MsG0480020614.01.T01:intron 40.0%
! ATGTCCGAAGGTATGTCTAT+GGG + Chr4:44775093-44775112 None:intergenic 40.0%
! ATTCTCTCCGGTGTCAATTT+GGG + Chr4:44774251-44774270 None:intergenic 40.0%
! CACTCGTGGTGTTAAAATTG+CGG - Chr4:44771014-44771033 MsG0480020614.01.T01:intron 40.0%
! GAGTATAACTTTGCTGTGAG+AGG + Chr4:44773890-44773909 None:intergenic 40.0%
! TATGTCCGAAGGTATGTCTA+TGG + Chr4:44775094-44775113 None:intergenic 40.0%
! TCACTCAAGTAAGTTGGAGA+AGG - Chr4:44772231-44772250 MsG0480020614.01.T01:intron 40.0%
! TCTATTCACTTTCTGGTGAG+AGG - Chr4:44774518-44774537 MsG0480020614.01.T01:intron 40.0%
!! CATTGAGCGTTTTATTGGAG+TGG - Chr4:44775286-44775305 MsG0480020614.01.T01:CDS 40.0%
!! GAAGGGGCATTAATTTGTAG+TGG + Chr4:44771300-44771319 None:intergenic 40.0%
!! GGTGTTGATAGGTAATGCAA+AGG + Chr4:44771211-44771230 None:intergenic 40.0%
!! TTGAGCGTTTTATTGGAGTG+GGG - Chr4:44775288-44775307 MsG0480020614.01.T01:CDS 40.0%
!!! AGACTGGTTTTAAGACATGC+CGG + Chr4:44772143-44772162 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - Chr4:44773283-44773302 MsG0480020614.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr4:44773302-44773283 None:intergenic 40.0%
AAAGTCGAAGCCTCTCGATA+AGG + Chr4:44774728-44774747 None:intergenic 45.0%
AAGAGCAGCTTCATCAACAG+TGG + Chr4:44771387-44771406 None:intergenic 45.0%
AAGTCGAAGCCTCTCGATAA+GGG + Chr4:44774727-44774746 None:intergenic 45.0%
AATGGTGGTTCATGCCCAAT+TGG + Chr4:44772785-44772804 None:intergenic 45.0%
ACATGTGTACATCATGTGGC+TGG + Chr4:44770896-44770915 None:intergenic 45.0%
ACCCACATGTGTACATCATG+TGG + Chr4:44770900-44770919 None:intergenic 45.0%
ACTTCGTACCCATACGAGTA+AGG + Chr4:44772329-44772348 None:intergenic 45.0%
AGCCACATGATGTACACATG+TGG - Chr4:44770895-44770914 MsG0480020614.01.T01:intron 45.0%
ATCGGTTGCTACTGCTTACA+TGG - Chr4:44772923-44772942 MsG0480020614.01.T01:intron 45.0%
ATCTGGTTGTCCACATCTAG+AGG - Chr4:44771167-44771186 MsG0480020614.01.T01:intron 45.0%
ATGGTGGTTCATGCCCAATT+GGG + Chr4:44772784-44772803 None:intergenic 45.0%
CAAGGTCCAGAAACTTGACT+TGG - Chr4:44770938-44770957 MsG0480020614.01.T01:intron 45.0%
GAGGCTTCGACTTTACTTCA+TGG - Chr4:44774734-44774753 MsG0480020614.01.T01:intron 45.0%
GCAGTAGAAGAGCAAAGACT+TGG - Chr4:44771828-44771847 MsG0480020614.01.T01:intron 45.0%
GCCACATGATGTACACATGT+GGG - Chr4:44770896-44770915 MsG0480020614.01.T01:intron 45.0%
GGTGGTATGTAAGTGAAGAC+CGG - Chr4:44775008-44775027 MsG0480020614.01.T01:intron 45.0%
GTGGTATGTAAGTGAAGACC+GGG - Chr4:44775009-44775028 MsG0480020614.01.T01:intron 45.0%
TAGACTTGTGAGGAGACACT+TGG - Chr4:44775131-44775150 MsG0480020614.01.T01:CDS 45.0%
TAGCAACCGATCAGATACCT+TGG + Chr4:44772914-44772933 None:intergenic 45.0%
TATGCAGTTTCTCAGCATGG+AGG - Chr4:44771590-44771609 MsG0480020614.01.T01:intron 45.0%
TCACACGTGAAAAGCCTAAG+TGG + Chr4:44770992-44771011 None:intergenic 45.0%
TCAGATACCTTGGTCAGATG+CGG + Chr4:44772904-44772923 None:intergenic 45.0%
TCGAATGCGTATGCAAACCA+TGG - Chr4:44774359-44774378 MsG0480020614.01.T01:CDS 45.0%
TCGACTTCTCAATGTGCGAA+GGG - Chr4:44774835-44774854 MsG0480020614.01.T01:intron 45.0%
TCTTCATCTCCGTGAAACTG+TGG - Chr4:44771096-44771115 MsG0480020614.01.T01:intron 45.0%
TGTTAGTAGGATGTTGTGGG+TGG - Chr4:44772427-44772446 MsG0480020614.01.T01:intron 45.0%
TTAGTAACCGCATCTGACCA+AGG - Chr4:44772894-44772913 MsG0480020614.01.T01:intron 45.0%
TTCGACTTCTCAATGTGCGA+AGG - Chr4:44774834-44774853 MsG0480020614.01.T01:intron 45.0%
! AACTCAGGGTCTGAAATCTC+TGG + Chr4:44770786-44770805 None:intergenic 45.0%
! CTCGTGGTGTTAAAATTGCG+GGG - Chr4:44771016-44771035 MsG0480020614.01.T01:intron 45.0%
! GATTCTCTCCGGTGTCAATT+TGG + Chr4:44774252-44774271 None:intergenic 45.0%
!! AAGTTTTGGCCTGGTGGTAT+TGG + Chr4:44774317-44774336 None:intergenic 45.0%
!! ATAAGGGGGTATTGACTCAG+CGG + Chr4:44774711-44774730 None:intergenic 45.0%
!! GATCAACTGGTTCGATCTCA+TGG - Chr4:44775166-44775185 MsG0480020614.01.T01:CDS 45.0%
!! TAAAGGAAGTTTTGGCCTGG+TGG + Chr4:44774323-44774342 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - Chr4:44773282-44773301 MsG0480020614.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr4:44773301-44773282 None:intergenic 45.0%
!! TATATAATTAAAGATATTAA+CGG - Chr4:44773495-44773514 MsG0480020614.01.T01:intron 5.0%
AACTCGGCGTGAAGGAATCA+TGG - Chr4:44775231-44775250 MsG0480020614.01.T01:CDS 50.0%
ACTTGTGAGGAGACACTTGG+TGG - Chr4:44775134-44775153 MsG0480020614.01.T01:CDS 50.0%
AGACATGCCGGAGTTACTGA+TGG + Chr4:44772131-44772150 None:intergenic 50.0%
AGTCGAAGCCTCTCGATAAG+GGG + Chr4:44774726-44774745 None:intergenic 50.0%
GAATCGAACCTGAGACCTTG+CGG - Chr4:44774267-44774286 MsG0480020614.01.T01:intron 50.0%
GGTTGGAAACTCTAGATGGG+TGG - Chr4:44772103-44772122 MsG0480020614.01.T01:intron 50.0%
GTATGCTCGAACTGCTTGTG+TGG - Chr4:44772699-44772718 MsG0480020614.01.T01:intron 50.0%
GTCAATACCCCCTTATCGAG+AGG - Chr4:44774715-44774734 MsG0480020614.01.T01:intron 50.0%
GTCTCAGGTTCGATTCTCTC+CGG + Chr4:44774263-44774282 None:intergenic 50.0%
TAGCCCACCCAAATTGACAC+CGG - Chr4:44774241-44774260 MsG0480020614.01.T01:intron 50.0%
TCAGTGAAGGCAAACGTGAC+AGG - Chr4:44773992-44774011 MsG0480020614.01.T01:CDS 50.0%
TCGTACCCATACGAGTAAGG+AGG + Chr4:44772326-44772345 None:intergenic 50.0%
TGAAGGCAAACGTGACAGGT+AGG - Chr4:44773996-44774015 MsG0480020614.01.T01:CDS 50.0%
TTTCACGTGTGAGTCACTCG+TGG - Chr4:44771000-44771019 MsG0480020614.01.T01:intron 50.0%
TTTGGATGAACTCGGCGTGA+AGG - Chr4:44775223-44775242 MsG0480020614.01.T01:CDS 50.0%
! TCTCCGGTGTCAATTTGGGT+GGG + Chr4:44774247-44774266 None:intergenic 50.0%
!! GCATATCGACTCCCATCTTG+TGG + Chr4:44770733-44770752 None:intergenic 50.0%
!! GTGGTATTGGCTTGGGTCTT+GGG + Chr4:44774304-44774323 None:intergenic 50.0%
!! TATTGACTCAGCGGACTAGG+AGG + Chr4:44774702-44774721 None:intergenic 50.0%
AGACCCAAGCCAATACCACC+AGG - Chr4:44774305-44774324 MsG0480020614.01.T01:intron 55.0%
GGTGGAGCCATCAGTAACTC+CGG - Chr4:44772121-44772140 MsG0480020614.01.T01:intron 55.0%
GTCGAAGCCTCTCGATAAGG+GGG + Chr4:44774725-44774744 None:intergenic 55.0%
! CTCTCCGGTGTCAATTTGGG+TGG + Chr4:44774248-44774267 None:intergenic 55.0%
!! GGGTATTGACTCAGCGGACT+AGG + Chr4:44774705-44774724 None:intergenic 55.0%
!! GGTGGTATTGGCTTGGGTCT+TGG + Chr4:44774305-44774324 None:intergenic 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG + Chr4:44774311-44774330 None:intergenic 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG + Chr4:44774312-44774331 None:intergenic 55.0%
TCGAACCTGAGACCTTGCGG+AGG - Chr4:44774270-44774289 MsG0480020614.01.T01:intron 60.0%
TGCGAAGGGAAGACGTGCCA+TGG - Chr4:44774849-44774868 MsG0480020614.01.T01:intron 60.0%
GTGCTCCTCCGCAAGGTCTC+AGG + Chr4:44774278-44774297 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCGCA+AGG + Chr4:44774285-44774304 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 44770618 44775469 44770618 ID=MsG0480020614.01;Name=MsG0480020614.01
Chr4 mRNA 44770618 44775469 44770618 ID=MsG0480020614.01.T01;Parent=MsG0480020614.01;Name=MsG0480020614.01.T01;_AED=0.45;_eAED=0.46;_QI=0|0.4|0.16|1|1|1|6|0|388
Chr4 exon 44775080 44775469 44775080 ID=MsG0480020614.01.T01:exon:19079;Parent=MsG0480020614.01.T01
Chr4 exon 44774585 44774725 44774585 ID=MsG0480020614.01.T01:exon:19078;Parent=MsG0480020614.01.T01
Chr4 exon 44774338 44774490 44774338 ID=MsG0480020614.01.T01:exon:19077;Parent=MsG0480020614.01.T01
Chr4 exon 44773862 44774016 44773862 ID=MsG0480020614.01.T01:exon:19076;Parent=MsG0480020614.01.T01
Chr4 exon 44771548 44771603 44771548 ID=MsG0480020614.01.T01:exon:19075;Parent=MsG0480020614.01.T01
Chr4 exon 44770618 44770889 44770618 ID=MsG0480020614.01.T01:exon:19074;Parent=MsG0480020614.01.T01
Chr4 CDS 44775080 44775469 44775080 ID=MsG0480020614.01.T01:cds;Parent=MsG0480020614.01.T01
Chr4 CDS 44774585 44774725 44774585 ID=MsG0480020614.01.T01:cds;Parent=MsG0480020614.01.T01
Chr4 CDS 44774338 44774490 44774338 ID=MsG0480020614.01.T01:cds;Parent=MsG0480020614.01.T01
Chr4 CDS 44773862 44774016 44773862 ID=MsG0480020614.01.T01:cds;Parent=MsG0480020614.01.T01
Chr4 CDS 44771548 44771603 44771548 ID=MsG0480020614.01.T01:cds;Parent=MsG0480020614.01.T01
Chr4 CDS 44770618 44770889 44770618 ID=MsG0480020614.01.T01:cds;Parent=MsG0480020614.01.T01
Gene Sequence

>MsG0480020614.01.T01

ATGGCGTGCAAAGATGAAAAACATGATCGATTAAGCAATCTCTCAGACGATTTGATTTGTCATATTCTGTCTTTCCTATCAACAAAAGAGTCTTATAGAACATGTGTTCTATCCACAAGATGGGAGTCGATATGCACCAAGATTCCCAACCTTCACTTTCAATTACCAGAGATTTCAGACCCTGAGTTGTCCAAAGAAATCAAATTTGTGAATGTTGCTCTCCTAAGACGCACCGAAAATATAAGAAAACTAAGTCTTGATAGCAACAAAGGCTGCCAGCCACATGATGTACACATGTGGGTTTCAAAGGCATTAGATCTCAAGGTCCAGAAACTTGACTTGGATCTGTTTCTCCATGAAAAATCTTATTGCCACTTAGGCTTTTCACGTAAATATGACTTTACAAACTTATCCACTGTTGATGAAGCTGCTCTTTGCATTTGTAAGCGTCCGGATTTTAACAATTTGTATACACTCTTGAAAGGACTTTCTAATGTCAAAACATTGGCTCTCGGTGCTAAAACTTTTCATTTTCTCAGCATGGAGGACAAACTTGACAACTTACATCTCCTCACTTTTCACAATTTATTATATTTAACGATTGAAATATCTGAGAATTGCAGTTGGAATATGCTAGTCAGCTTTCTACAGAATGCTCCAAAACTTAAGGATCTTGCAATTATGAGAAAAATTGAAATCAATTCCCGAAGAAATGAGGTTGGAAACTCTAGATGGGTGGAGCCATCAGTAACTCCGGCATGTCTTAAAACCAGTCTCATTGCATTTGAATTTAAAGGAATTCAAAACATAAAACTGAGTTGGACTTTACGCGATATATTGTTATCGATTCTCATGACTCTCTTCATTGCTCTTTCTATTCACTTTCTGGTGAGAGATAAAACTACTTATCACATATCAATTTTGGATGAACTCGGCGTGAAGGAATCATGGACAAAACTCTTCGTTGTTGGACCATTCTCCTACATTGAGCGTTTTATTGGAGTGGGGAAGAATGGTGATATATTCATTAAAAAGAAAGATGGTCAACTAGTCTGTTTTGATTTAAATACACAAAATAGTGAAGAACTTGGTGTTAAAGGAGCACATTTTTATGATATTGCAATTTACAAGAAAAGCCTTGTTTCAATTGGAGGAATAAATCATTAA
Protein sequence

>MsG0480020614.01.T01

MACKDEKHDRLSNLSDDLICHILSFLSTKESYRTCVLSTRWESICTKIPNLHFQLPEISDPELSKEIKFVNVALLRRTENIRKLSLDSNKGCQPHDVHMWVSKALDLKVQKLDLDLFLHEKSYCHLGFSRKYDFTNLSTVDEAALCICKRPDFNNLYTLLKGLSNVKTLALGAKTFHFLSMEDKLDNLHLLTFHNLLYLTIEISENCSWNMLVSFLQNAPKLKDLAIMRKIEINSRRNEVGNSRWVEPSVTPACLKTSLIAFEFKGIQNIKLSWTLRDILLSILMTLFIALSIHFLVRDKTTYHISILDELGVKESWTKLFVVGPFSYIERFIGVGKNGDIFIKKKDGQLVCFDLNTQNSEELGVKGAHFYDIAIYKKSLVSIGGINH*