AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006302.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006302.01.T01 MTR_2g005590 96.855 318 4 3 1 318 1 312 0.0 618
MsG0280006302.01.T01 MTR_2g005590 96.541 318 4 4 1 318 1 311 0.0 611
MsG0280006302.01.T01 MTR_3g010220 49.844 321 114 12 11 316 3 291 6.08e-86 260
MsG0280006302.01.T01 MTR_8g005550 52.874 261 107 5 58 318 32 276 2.29e-82 251
MsG0280006302.01.T01 MTR_8g006580 52.874 261 107 5 58 318 32 276 2.29e-82 251
MsG0280006302.01.T01 MTR_8g006605 52.874 261 107 5 58 318 32 276 2.29e-82 251
MsG0280006302.01.T01 MTR_8g005430 52.107 261 108 6 58 318 32 275 9.84e-80 244
MsG0280006302.01.T01 MTR_7g074100 50.951 263 118 4 58 318 28 281 5.75e-79 242
MsG0280006302.01.T01 MTR_5g075710 50.746 268 112 6 53 316 28 279 2.99e-78 240
MsG0280006302.01.T01 MTR_5g075710 51.331 263 108 6 58 316 18 264 7.96e-78 239
MsG0280006302.01.T01 MTR_5g075710 50.775 258 107 6 63 316 1 242 8.31e-75 230
MsG0280006302.01.T01 MTR_3g062640 47.945 219 100 6 53 266 24 233 5.22e-59 189
MsG0280006302.01.T01 MTR_4g036415 46.774 124 59 3 168 291 217 333 1.05e-25 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006302.01.T01 AT1G09660 59.935 307 89 8 16 316 18 296 3.17e-110 322
MsG0280006302.01.T01 AT1G09660 59.935 307 89 8 16 316 18 296 3.17e-110 322
MsG0280006302.01.T01 AT4G26480 50.164 305 123 9 18 316 25 306 1.26e-84 258
MsG0280006302.01.T01 AT4G26480 50.164 305 123 9 18 316 25 306 1.26e-84 258
MsG0280006302.01.T01 AT1G09660 56.977 258 82 6 16 269 18 250 1.46e-83 253
MsG0280006302.01.T01 AT5G56140 50.694 288 124 6 33 316 39 312 2.03e-82 252
MsG0280006302.01.T01 AT3G08620 52.091 263 115 4 58 318 30 283 5.28e-80 245
MsG0280006302.01.T01 AT2G38610 47.115 312 125 10 14 317 6 285 8.07e-77 237
MsG0280006302.01.T01 AT2G38610 47.115 312 125 10 14 317 6 285 8.07e-77 237
MsG0280006302.01.T01 AT3G08620 51.012 247 110 4 74 318 1 238 7.13e-71 220
MsG0280006302.01.T01 AT4G26480 64.000 175 57 4 143 316 52 221 4.07e-69 215
MsG0280006302.01.T01 AT5G51300 47.581 124 58 3 168 291 244 360 2.08e-25 107
MsG0280006302.01.T01 AT5G51300 47.581 124 58 3 168 291 244 360 2.08e-25 107
MsG0280006302.01.T01 AT5G51300 47.581 124 58 3 168 291 244 360 2.08e-25 107

Find 142 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATCTGATTTAGAATTTA+TGG 0.074104 2:-237832 MsG0280006302.01.T01:three_prime_UTR
CGGTGCCAGCGGCTTTATTA+TGG 0.231411 2:-240717 MsG0280006302.01.T01:CDS
ACAAGTGCAATGGCTCTTTA+AGG 0.242643 2:+238239 None:intergenic
TGCAATGCATTACCTCTCTA+TGG 0.254875 2:+240606 None:intergenic
CTTGAAAGGATCCCATTCTT+TGG 0.276158 2:+239029 None:intergenic
TTGTGGGAGAACTTGCAAAA+AGG 0.318876 2:+240781 None:intergenic
CTCTGTGAAGGATTCGATTA+AGG 0.328927 2:-238723 MsG0280006302.01.T01:intron
GACTCCCTCCTTCTCCTATC+AGG 0.330439 2:-240964 MsG0280006302.01.T01:CDS
GGAGGAGGAGGAGCGGGAGC+AGG 0.333878 2:+241022 None:intergenic
ATTATTATTATTCCCAGATT+GGG 0.340347 2:+241081 None:intergenic
AAGATTGACTGTTAACATAC+TGG 0.343921 2:+237879 None:intergenic
TATTATTATTATTCCCAGAT+TGG 0.356424 2:+241080 None:intergenic
ATTTATGGTGGCCTTTCTGC+AGG 0.366745 2:-237817 MsG0280006302.01.T01:three_prime_UTR
GCTTCGCTGCGTGTGGAGTT+TGG 0.373802 2:-241474 MsG0280006302.01.T01:five_prime_UTR
CAGGAGCATGAGGAGGGAAT+TGG 0.377923 2:+241041 None:intergenic
CTGATAACTCTCTTCACTAT+AGG 0.381788 2:+238962 None:intergenic
GCATCTCCAGTGGGTTGGCA+TGG 0.392051 2:-239007 MsG0280006302.01.T01:CDS
TCGCGATCGGAGAACCTGAT+AGG 0.403053 2:+240950 None:intergenic
CTTTCTGCAGGGCTGGTCGA+TGG 0.412461 2:-237805 MsG0280006302.01.T01:three_prime_UTR
TAGATATTTGGCCGAACTCT+TGG 0.413533 2:-240825 MsG0280006302.01.T01:CDS
CTATAGTGAAGAGAGTTATC+AGG 0.414243 2:-238961 MsG0280006302.01.T01:CDS
CTATTGAAAGGTGACATACT+TGG 0.416568 2:+237938 None:intergenic
TAAAGAGCCATTGCACTTGT+TGG 0.421722 2:-238236 MsG0280006302.01.T01:CDS
GACATACTTGGACTCATACT+AGG 0.423494 2:+237950 None:intergenic
AAGGATAGAAGATGGGAGAG+TGG 0.428420 2:-241108 MsG0280006302.01.T01:exon
TATGATCAATGGTACTTTGA+GGG 0.439845 2:-237993 MsG0280006302.01.T01:CDS
CTGGGGTCATCTTCCTGTCT+TGG 0.441491 2:+237898 None:intergenic
AGAAGAAGAAGGATAGAAGA+TGG 0.445365 2:-241116 MsG0280006302.01.T01:exon
CAATGGGAATATCCAAAGAA+TGG 0.459480 2:-239041 MsG0280006302.01.T01:CDS
GCAATGCATTACCTCTCTAT+GGG 0.459763 2:+240607 None:intergenic
ACATTTGGATATTTGTCGAC+AGG 0.460627 2:+238929 None:intergenic
GGAGCGGGAGCAGGAGCATG+AGG 0.461728 2:+241031 None:intergenic
TTGTCTCTCAGCCAAGAGTT+CGG 0.463348 2:+240814 None:intergenic
TGGTGGCCTTTCTGCAGGGC+TGG 0.464791 2:-237812 MsG0280006302.01.T01:three_prime_UTR
ACATCCTATCACCAGGCCTA+TGG 0.465082 2:-240642 MsG0280006302.01.T01:CDS
ATTAAAGTACCTTTCGCGAT+CGG 0.471477 2:+240937 None:intergenic
TTAAGAGTCGGGTAGATTGT+GGG 0.477974 2:+240765 None:intergenic
CTTGGCTGAGAGACAAAAGT+TGG 0.478339 2:-240807 MsG0280006302.01.T01:CDS
CAGATGGTCATAATCTAGCT+TGG 0.478587 2:+237847 None:intergenic
CATAATAAAGCCGCTGGCAC+CGG 0.478992 2:+240718 None:intergenic
GCGGGAGCAGGAGCATGAGG+AGG 0.483859 2:+241034 None:intergenic
CTATGATCAATGGTACTTTG+AGG 0.483911 2:-237994 MsG0280006302.01.T01:CDS
AATGGGAATATCCAAAGAAT+GGG 0.494069 2:-239040 MsG0280006302.01.T01:CDS
TTCATTCCATTACTATTGAA+AGG 0.494268 2:+237926 None:intergenic
TGTTCCCTATGCAGGACAAT+GGG 0.496093 2:-239057 MsG0280006302.01.T01:intron
TTCAAGCATCTCCAGTGGGT+TGG 0.497725 2:-239012 MsG0280006302.01.T01:CDS
AGATGGTCATAATCTAGCTT+GGG 0.498351 2:+237848 None:intergenic
TTGATTGCAGAAGAAGAAGA+AGG 0.500808 2:-241127 MsG0280006302.01.T01:intron
AGAGCCATTGCACTTGTTGG+TGG 0.501510 2:-238233 MsG0280006302.01.T01:CDS
AAAGGAGTAGTAGAAGAGTC+AGG 0.501586 2:+240683 None:intergenic
TCTCTTGGCTTCGCTGCGTG+TGG 0.502862 2:-241481 MsG0280006302.01.T01:five_prime_UTR
TGTGGCCCATGCCAACCCAC+TGG 0.504009 2:+239001 None:intergenic
AAATCCATAGGCCTGGTGAT+AGG 0.504456 2:+240638 None:intergenic
GCCATTGCACTTGTTGGTGG+AGG 0.504952 2:-238230 MsG0280006302.01.T01:CDS
GGAATGAAACGTGCCAAGAC+AGG 0.508950 2:-237911 MsG0280006302.01.T01:CDS
GAAGAAGAAGGATAGAAGAT+GGG 0.509491 2:-241115 MsG0280006302.01.T01:exon
CTCATACTAGGGCTCATGCT+TGG 0.511219 2:+237962 None:intergenic
ACTACAAGAAGCAGCAATTG+AGG 0.513008 2:-238024 MsG0280006302.01.T01:CDS
GAAATCAGACGTATCTCATC+CGG 0.516750 2:-240737 MsG0280006302.01.T01:CDS
ATGTCACCTTTCAATAGTAA+TGG 0.520448 2:-237932 MsG0280006302.01.T01:CDS
TCCTTTCAAGCATCTCCAGT+GGG 0.523241 2:-239016 MsG0280006302.01.T01:CDS
TGGAAGCCATGACAGAATGT+AGG 0.523637 2:-238766 MsG0280006302.01.T01:CDS
CATCGACCAGCCCTGCAGAA+AGG 0.524029 2:+237806 None:intergenic
TCTTTAAGGTGCTCATAACC+AGG 0.524384 2:+238253 None:intergenic
TTATTATTATTCCCAGATTG+GGG 0.527052 2:+241082 None:intergenic
GTTAAGAGTCGGGTAGATTG+TGG 0.529482 2:+240764 None:intergenic
CGGGAATTGATTATATCCTC+AGG 0.529551 2:+238199 None:intergenic
AGATTGACTGTTAACATACT+GGG 0.532125 2:+237880 None:intergenic
CATCTCCAGTGGGTTGGCAT+GGG 0.533583 2:-239006 MsG0280006302.01.T01:CDS
ACCCACTGGAGATGCTTGAA+AGG 0.533812 2:+239015 None:intergenic
CTCTTCACTATAGGAGTCGT+CGG 0.537410 2:+238971 None:intergenic
CGGGAGCAGGAGCATGAGGA+GGG 0.543247 2:+241035 None:intergenic
TGTGGCGTGGTGATTGACTC+TGG 0.544819 2:-241448 MsG0280006302.01.T01:five_prime_UTR
GTGATAGGATGTTGAGGTAA+GGG 0.547615 2:+240653 None:intergenic
CTACAAGAAGCAGCAATTGA+GGG 0.548640 2:-238023 MsG0280006302.01.T01:CDS
ACCATAAATTCTAAATCAGA+TGG 0.550364 2:+237831 None:intergenic
CATTTGGATATTTGTCGACA+GGG 0.550943 2:+238930 None:intergenic
TGATTTCCTGAGTTAAGAGT+CGG 0.551617 2:+240753 None:intergenic
CAAACTAGAAGTATGCTACT+AGG 0.554250 2:+237663 None:intergenic
ATGTTCCATAATAAAGCCGC+TGG 0.554356 2:+240712 None:intergenic
GAAGAGAAGTGAGTGAGTGA+AGG 0.555009 2:+241413 None:intergenic
TGATAGGATGTTGAGGTAAG+GGG 0.555715 2:+240654 None:intergenic
TCAGGTTCTCCGATCGCGAA+AGG 0.557194 2:-240946 MsG0280006302.01.T01:intron
CCAGTCGAAATCCATAGGCC+TGG 0.557763 2:+240631 None:intergenic
GATTTCCTGAGTTAAGAGTC+GGG 0.558765 2:+240754 None:intergenic
GGTGATAGGATGTTGAGGTA+AGG 0.559417 2:+240652 None:intergenic
ACATACTTGGACTCATACTA+GGG 0.560928 2:+237951 None:intergenic
TTTATGGTGGCCTTTCTGCA+GGG 0.561741 2:-237816 MsG0280006302.01.T01:three_prime_UTR
GATAGGATGTTGAGGTAAGG+GGG 0.563174 2:+240655 None:intergenic
CATGGTCATGGACATGGACA+TGG 0.563740 2:-240986 MsG0280006302.01.T01:CDS
TTGGCTGAGAGACAAAAGTT+GGG 0.564376 2:-240806 MsG0280006302.01.T01:CDS
TAAATAAACAAATGTAGTAG+TGG 0.564796 2:-237532 MsG0280006302.01.T01:three_prime_UTR
AGGGTTTACATCAGAGGCTG+TGG 0.564960 2:-238746 MsG0280006302.01.T01:CDS
CAGAGGCTGTGGCTCTGTGA+AGG 0.566382 2:-238735 MsG0280006302.01.T01:CDS
ATGTTCCCTATGCAGGACAA+TGG 0.568763 2:-239058 MsG0280006302.01.T01:intron
GGAAGCCATGACAGAATGTA+GGG 0.569325 2:-238765 MsG0280006302.01.T01:CDS
AGGGAGTTAGCTATGATCAA+TGG 0.569405 2:-238004 MsG0280006302.01.T01:CDS
GGATATAATCAATTCCCGCT+TGG 0.572726 2:-238194 MsG0280006302.01.T01:CDS
GTGGGTTGGCATGGGCCACA+AGG 0.575059 2:-238998 MsG0280006302.01.T01:CDS
CGGGAACTCGTTGAAAAGAG+TGG 0.575178 2:-238786 MsG0280006302.01.T01:CDS
TGCCACAGCATGGTCCAAGC+GGG 0.575252 2:+238180 None:intergenic
TATTGTGACATCAATAATGT+TGG 0.578038 2:-237500 MsG0280006302.01.T01:three_prime_UTR
GCCTCCACCAACAAGTGCAA+TGG 0.578150 2:+238229 None:intergenic
AACAAAACAGAGAAATTAAG+CGG 0.580450 2:+237777 None:intergenic
ATCCTTTCAAGCATCTCCAG+TGG 0.582822 2:-239017 MsG0280006302.01.T01:CDS
TGGGGCCAGTCGAAATCCAT+AGG 0.583655 2:+240626 None:intergenic
TCGGAGAACCTGATAGGAGA+AGG 0.584650 2:+240956 None:intergenic
GGTCGAATTCTGGGACCTCG+CGG 0.587318 2:-238806 MsG0280006302.01.T01:CDS
GGTGATTGACTCTGGTGTCG+TGG 0.589163 2:-241440 MsG0280006302.01.T01:five_prime_UTR
GTCGAATTCTGGGACCTCGC+GGG 0.589903 2:-238805 MsG0280006302.01.T01:CDS
TACCTCAACATCCTATCACC+AGG 0.590777 2:-240649 MsG0280006302.01.T01:CDS
TTCCCGCTTGGACCATGCTG+TGG 0.591859 2:-238182 MsG0280006302.01.T01:CDS
GAATGTAGGGTTTACATCAG+AGG 0.599054 2:-238752 MsG0280006302.01.T01:CDS
GAGAACCTGATAGGAGAAGG+AGG 0.599547 2:+240959 None:intergenic
TTTCGACTGGCCCCATAGAG+AGG 0.600627 2:-240618 MsG0280006302.01.T01:intron
ATCTGATTTAGAATTTATGG+TGG 0.604203 2:-237829 MsG0280006302.01.T01:three_prime_UTR
GTAAACCCTACATTCTGTCA+TGG 0.604388 2:+238760 None:intergenic
CCAGGCCTATGGATTTCGAC+TGG 0.604436 2:-240631 MsG0280006302.01.T01:CDS
TGTGTATATCTAAATATGCA+TGG 0.607204 2:-237570 MsG0280006302.01.T01:three_prime_UTR
GAGTAGTAGAAGAGTCAGGA+TGG 0.607680 2:+240687 None:intergenic
ATCTACCCGACTCTTAACTC+AGG 0.612173 2:-240759 MsG0280006302.01.T01:CDS
GTACAGTCTTAACTAAGTTG+CGG 0.616322 2:-237692 MsG0280006302.01.T01:three_prime_UTR
CGTATCTCATCCGGTGCCAG+CGG 0.617661 2:-240728 MsG0280006302.01.T01:CDS
TGTCCATGTCCATGACCATG+TGG 0.623116 2:+240989 None:intergenic
GTCCATGTCCATGACCATGT+GGG 0.624947 2:+240990 None:intergenic
AGAACCTGATAGGAGAAGGA+GGG 0.630410 2:+240960 None:intergenic
TGGAGTTTGGCAGTGTGGCG+TGG 0.631308 2:-241461 MsG0280006302.01.T01:five_prime_UTR
TCCATGTCCATGACCATGTG+GGG 0.635978 2:+240991 None:intergenic
TTTCTAGTACTGCCACAGCA+TGG 0.639735 2:+238170 None:intergenic
GGCCTGGTGATAGGATGTTG+AGG 0.640500 2:+240647 None:intergenic
GAGAAGCTTAAAGATAAACC+TGG 0.641028 2:-238271 MsG0280006302.01.T01:CDS
TACGACAGTCAATATTCTAG+CGG 0.652455 2:+237728 None:intergenic
CTGCCACAGCATGGTCCAAG+CGG 0.660407 2:+238179 None:intergenic
GATCAATGGTACTTTGAGGG+AGG 0.660469 2:-237990 MsG0280006302.01.T01:CDS
GCGTGTGGAGTTTGGCAGTG+TGG 0.676441 2:-241466 MsG0280006302.01.T01:five_prime_UTR
TATTATTATTCCCAGATTGG+GGG 0.682416 2:+241083 None:intergenic
CAATGCATTACCTCTCTATG+GGG 0.692728 2:+240608 None:intergenic
ATAGGATGTTGAGGTAAGGG+GGG 0.693945 2:+240656 None:intergenic
GATTGACTGTTAACATACTG+GGG 0.695271 2:+237881 None:intergenic
GGTGGAGGCAGAGTTTCCTG+AGG 0.696347 2:-238215 MsG0280006302.01.T01:CDS
GGAGTCGTCGGAACTCCTTG+TGG 0.702280 2:+238983 None:intergenic
CCATGTCCATGACCATGTGG+GGG 0.710004 2:+240992 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATAATAATAAT+AGG - Chr2:237653-237672 MsG0280006302.01.T01:three_prime_UTR 0.0%
!!! AAAAGATTTTATGAATTTTA+AGG - Chr2:239020-239039 MsG0280006302.01.T01:CDS 10.0%
!!! AATATTGACTAAATAAATTT+AGG - Chr2:240482-240501 MsG0280006302.01.T01:intron 10.0%
!!! TTTAATAAATTAGATTTTGA+TGG + Chr2:239493-239512 None:intergenic 10.0%
!! ATATTAATGAAAATTAGGAA+AGG + Chr2:240630-240649 None:intergenic 15.0%
!! GGGAATAATAATAATAATAA+TGG - Chr2:237853-237872 MsG0280006302.01.T01:three_prime_UTR 15.0%
!! TATATAATTCTTCAAATTGA+AGG + Chr2:240376-240395 None:intergenic 15.0%
!! TTCCTATATTAATGAAAATT+AGG + Chr2:240635-240654 None:intergenic 15.0%
!!! AAGATTTTAAAAGATTTTGT+AGG - Chr2:238890-238909 MsG0280006302.01.T01:intron 15.0%
!!! ATCAATCATTTTTAGATATT+TGG - Chr2:238089-238108 MsG0280006302.01.T01:intron 15.0%
!!! TAAGATTTTAAAGGATTTTA+TGG - Chr2:238983-239002 MsG0280006302.01.T01:CDS 15.0%
!!! TTCCTAATTTTCATTAATAT+AGG - Chr2:240630-240649 MsG0280006302.01.T01:CDS 15.0%
!!! TTTACATCATAAGATTTTAA+AGG - Chr2:238974-238993 MsG0280006302.01.T01:CDS 15.0%
!!! TTTTTTATTTCTCATATGAA+TGG - Chr2:240568-240587 MsG0280006302.01.T01:intron 15.0%
!! ATTATTATTATTCCCAGATT+GGG + Chr2:237848-237867 None:intergenic 20.0%
!! CAAAATCATTCAAATTTCAA+AGG + Chr2:239520-239539 None:intergenic 20.0%
!! TAAATAAACAAATGTAGTAG+TGG - Chr2:241394-241413 MsG0280006302.01.T01:five_prime_UTR 20.0%
!! TATTATTATTATTCCCAGAT+TGG + Chr2:237849-237868 None:intergenic 20.0%
!! TTAATTATGAAAAAGACTTG+TGG + Chr2:239673-239692 None:intergenic 20.0%
!!! ACTCTAAAGAACTATAAAAA+GGG - Chr2:240248-240267 MsG0280006302.01.T01:intron 20.0%
!!! ATTTTCAATTTGGATTTCAA+TGG - Chr2:238950-238969 MsG0280006302.01.T01:CDS 20.0%
!!! CATTTTTCAAAATTGATCTT+AGG - Chr2:238549-238568 MsG0280006302.01.T01:intron 20.0%
!!! CTAAGATCAATTTTGAAAAA+TGG + Chr2:238551-238570 None:intergenic 20.0%
! AAAAAAACTATTGCATTGTG+AGG - Chr2:239772-239791 MsG0280006302.01.T01:intron 25.0%
! AACAAAACAGAGAAATTAAG+CGG + Chr2:241152-241171 None:intergenic 25.0%
! ACCATAAATTCTAAATCAGA+TGG + Chr2:241098-241117 None:intergenic 25.0%
! ATCACTTAAAAAAAGTCTCA+TGG + Chr2:239547-239566 None:intergenic 25.0%
! ATTCACTCAAGCATTAAAAA+TGG - Chr2:238357-238376 MsG0280006302.01.T01:intron 25.0%
! ATTCTGAATGAATGAATGAA+TGG - Chr2:237719-237738 MsG0280006302.01.T01:three_prime_UTR 25.0%
! CTTAACATATGTATTGGATT+AGG - Chr2:238831-238850 MsG0280006302.01.T01:intron 25.0%
! GAAGATAAACAGATATGATT+CGG + Chr2:240047-240066 None:intergenic 25.0%
! GAGAGAAATAACGATAAAAA+AGG + Chr2:237560-237579 None:intergenic 25.0%
! GCAATTTAAAAAAAGTCTTG+TGG + Chr2:239631-239650 None:intergenic 25.0%
! TATTGTGACATCAATAATGT+TGG - Chr2:241426-241445 MsG0280006302.01.T01:five_prime_UTR 25.0%
! TGTGTATATCTAAATATGCA+TGG - Chr2:241356-241375 MsG0280006302.01.T01:intron 25.0%
! TTATTATTATTCCCAGATTG+GGG + Chr2:237847-237866 None:intergenic 25.0%
! TTCATTCCATTACTATTGAA+AGG + Chr2:241003-241022 None:intergenic 25.0%
!! AATAAAATGATGGGAAAGTA+AGG + Chr2:238026-238045 None:intergenic 25.0%
!! ACCATCTGATTTAGAATTTA+TGG - Chr2:241094-241113 MsG0280006302.01.T01:CDS 25.0%
!! ATCTGATTTAGAATTTATGG+TGG - Chr2:241097-241116 MsG0280006302.01.T01:CDS 25.0%
!! CACTCTAAAGAACTATAAAA+AGG - Chr2:240247-240266 MsG0280006302.01.T01:intron 25.0%
!! CTCTAAAGAACTATAAAAAG+GGG - Chr2:240249-240268 MsG0280006302.01.T01:intron 25.0%
!!! AAGCATATAGACTTGTTTTA+AGG + Chr2:238644-238663 None:intergenic 25.0%
!!! CATGATTTTAAAAGACAATC+AGG - Chr2:238927-238946 MsG0280006302.01.T01:intron 25.0%
!!! GTCATTTTAAAAAAGTCTTG+AGG + Chr2:239589-239608 None:intergenic 25.0%
AAATAAAAAAGCAGCAGGAT+GGG + Chr2:240558-240577 None:intergenic 30.0%
AAGATTGACTGTTAACATAC+TGG + Chr2:241050-241069 None:intergenic 30.0%
AATGGGAATATCCAAAGAAT+GGG - Chr2:239886-239905 MsG0280006302.01.T01:intron 30.0%
AGATTGACTGTTAACATACT+GGG + Chr2:241049-241068 None:intergenic 30.0%
AGTTGTTACATCTTTCAACT+TGG - Chr2:240515-240534 MsG0280006302.01.T01:intron 30.0%
ATGAGAAATAAAAAAGCAGC+AGG + Chr2:240563-240582 None:intergenic 30.0%
ATGTCACCTTTCAATAGTAA+TGG - Chr2:240994-241013 MsG0280006302.01.T01:CDS 30.0%
GAAATACATCAGGAAAAATG+AGG + Chr2:240606-240625 None:intergenic 30.0%
GAGTGTCTTAACATATGTAT+TGG - Chr2:238825-238844 MsG0280006302.01.T01:intron 30.0%
GTGAAAATAATCTATACCAC+AGG + Chr2:240793-240812 None:intergenic 30.0%
TATGATCAATGGTACTTTGA+GGG - Chr2:240933-240952 MsG0280006302.01.T01:intron 30.0%
TATTATTATTCCCAGATTGG+GGG + Chr2:237846-237865 None:intergenic 30.0%
TCACAACTTCTGTTTATAGA+CGG - Chr2:239826-239845 MsG0280006302.01.T01:intron 30.0%
TCCTACTTAGTACTTAACTA+GGG - Chr2:237754-237773 MsG0280006302.01.T01:three_prime_UTR 30.0%
TTCAGAACTTAAGATCAAGA+AGG + Chr2:238586-238605 None:intergenic 30.0%
TTTATGAGAGATAGAGAGAT+GGG - Chr2:239120-239139 MsG0280006302.01.T01:intron 30.0%
! AATTTTGTTGGTCGAATTCT+GGG - Chr2:240111-240130 MsG0280006302.01.T01:intron 30.0%
! GACAATCAGGATTTTCAATT+TGG - Chr2:238940-238959 MsG0280006302.01.T01:CDS 30.0%
! GTATTGGATTAGGATTCTAA+GGG + Chr2:239711-239730 None:intergenic 30.0%
! TAAATAGCTCTGTAATCCTA+CGG - Chr2:238666-238685 MsG0280006302.01.T01:intron 30.0%
! TAATTTTGTTGGTCGAATTC+TGG - Chr2:240110-240129 MsG0280006302.01.T01:intron 30.0%
! TAGTACTTAACTAGGGTTTT+TGG - Chr2:237761-237780 MsG0280006302.01.T01:three_prime_UTR 30.0%
! TCACAGCAGTATAATTTTGT+TGG - Chr2:240099-240118 MsG0280006302.01.T01:intron 30.0%
! TGTATTGGATTAGGATTCTA+AGG + Chr2:239712-239731 None:intergenic 30.0%
! TTTTATGAGAGATAGAGAGA+TGG - Chr2:239119-239138 MsG0280006302.01.T01:intron 30.0%
!! GTATTGGATTAGGATTTTGA+AGG - Chr2:238841-238860 MsG0280006302.01.T01:intron 30.0%
!!! CAAGTGTAACTTGTTTTTGT+AGG - Chr2:238441-238460 MsG0280006302.01.T01:intron 30.0%
!!! TAGTTTTTTTTTATCACGCC+TGG + Chr2:239762-239781 None:intergenic 30.0%
AATAAAAAAGCAGCAGGATG+GGG + Chr2:240557-240576 None:intergenic 35.0%
ACAACTTCTGTTTATAGACG+GGG - Chr2:239828-239847 MsG0280006302.01.T01:intron 35.0%
ACATACTTGGACTCATACTA+GGG + Chr2:240978-240997 None:intergenic 35.0%
ACATTTGGATATTTGTCGAC+AGG + Chr2:240000-240019 None:intergenic 35.0%
ACCCTAGTTAAGTACTAAGT+AGG + Chr2:237758-237777 None:intergenic 35.0%
ACCTAAATGTAGCAATTGCA+AGG + Chr2:240349-240368 None:intergenic 35.0%
ACCTTGCAATTGCTACATTT+AGG - Chr2:240345-240364 MsG0280006302.01.T01:intron 35.0%
AGAAGAAGAAGGATAGAAGA+TGG - Chr2:237810-237829 MsG0280006302.01.T01:three_prime_UTR 35.0%
ATAAAGATCCTGTAATGGCA+AGG - Chr2:238701-238720 MsG0280006302.01.T01:intron 35.0%
ATACATCAGGAAAAATGAGG+CGG + Chr2:240603-240622 None:intergenic 35.0%
CAATGGGAATATCCAAAGAA+TGG - Chr2:239885-239904 MsG0280006302.01.T01:intron 35.0%
CACAACTTCTGTTTATAGAC+GGG - Chr2:239827-239846 MsG0280006302.01.T01:intron 35.0%
CATTTGGATATTTGTCGACA+GGG + Chr2:239999-240018 None:intergenic 35.0%
CTACAATGGTAAGAGCTTTA+TGG + Chr2:240284-240303 None:intergenic 35.0%
CTATAGTGAAGAGAGTTATC+AGG - Chr2:239965-239984 MsG0280006302.01.T01:intron 35.0%
CTATGATCAATGGTACTTTG+AGG - Chr2:240932-240951 MsG0280006302.01.T01:intron 35.0%
CTATTGAAAGGTGACATACT+TGG + Chr2:240991-241010 None:intergenic 35.0%
CTGATAACTCTCTTCACTAT+AGG + Chr2:239967-239986 None:intergenic 35.0%
GAAATAAAAAAGCAGCAGGA+TGG + Chr2:240559-240578 None:intergenic 35.0%
GAAGAAGAAGGATAGAAGAT+GGG - Chr2:237811-237830 MsG0280006302.01.T01:three_prime_UTR 35.0%
GAGAAAATAGAGGAGTTAGA+GGG - Chr2:239164-239183 MsG0280006302.01.T01:intron 35.0%
GAGAAGCTTAAAGATAAACC+TGG - Chr2:240655-240674 MsG0280006302.01.T01:CDS 35.0%
GATTGACTGTTAACATACTG+GGG + Chr2:241048-241067 None:intergenic 35.0%
GTACAGTCTTAACTAAGTTG+CGG - Chr2:241234-241253 MsG0280006302.01.T01:intron 35.0%
GTAGGATTACAGAGCTATTT+AGG + Chr2:238667-238686 None:intergenic 35.0%
GTCCTACTTAGTACTTAACT+AGG - Chr2:237753-237772 MsG0280006302.01.T01:three_prime_UTR 35.0%
GTGCTATAAAGATCCTGTAA+TGG - Chr2:238696-238715 MsG0280006302.01.T01:intron 35.0%
TACAGGATCTTTATAGCACT+AGG + Chr2:238695-238714 None:intergenic 35.0%
TACGACAGTCAATATTCTAG+CGG + Chr2:241201-241220 None:intergenic 35.0%
TAGGAAAGGTGAAATACATC+AGG + Chr2:240616-240635 None:intergenic 35.0%
TATCACTTTGTGCAAGTCAA+TGG + Chr2:240433-240452 None:intergenic 35.0%
TGATTTCCTGAGTTAAGAGT+CGG + Chr2:238176-238195 None:intergenic 35.0%
TGCATTGTGAGGAAAATTGA+TGG - Chr2:239783-239802 MsG0280006302.01.T01:intron 35.0%
TGTAGCAATTGCAAGGTAAA+AGG + Chr2:240342-240361 None:intergenic 35.0%
TTATGAGAGATAGAGAGATG+GGG - Chr2:239121-239140 MsG0280006302.01.T01:intron 35.0%
TTCATCACCAAAAAACATCC+AGG - Chr2:238468-238487 MsG0280006302.01.T01:intron 35.0%
TTGATTGCAGAAGAAGAAGA+AGG - Chr2:237799-237818 MsG0280006302.01.T01:three_prime_UTR 35.0%
! ACTCTTCTACTACTCCTTTT+AGG - Chr2:238247-238266 MsG0280006302.01.T01:CDS 35.0%
! AGAAAGACTAGCCCTAAAAA+AGG + Chr2:240846-240865 None:intergenic 35.0%
! AGATGGTCATAATCTAGCTT+GGG + Chr2:241081-241100 None:intergenic 35.0%
! AGCTATTTGTTGCTAGACTT+TGG - Chr2:238780-238799 MsG0280006302.01.T01:CDS 35.0%
! ATTAAAGTACCTTTCGCGAT+CGG + Chr2:237992-238011 None:intergenic 35.0%
! CAAACTAGAAGTATGCTACT+AGG + Chr2:241266-241285 None:intergenic 35.0%
! GAAAGACTAGCCCTAAAAAA+GGG + Chr2:240845-240864 None:intergenic 35.0%
! TGATTCGGAGTGAAAAAACA+CGG + Chr2:240032-240051 None:intergenic 35.0%
!! CTTAAGTTCTGAACAAGTCT+TGG - Chr2:238593-238612 MsG0280006302.01.T01:intron 35.0%
!!! AGAAAATCTTTTGAAGCCTG+TGG - Chr2:240774-240793 MsG0280006302.01.T01:CDS 35.0%
!!! CTAGTATCCTGGATGTTTTT+TGG + Chr2:238478-238497 None:intergenic 35.0%
AAAAGAGATGAGAGAGGGAA+GGG - Chr2:239338-239357 MsG0280006302.01.T01:intron 40.0%
AAAGGAGTAGTAGAAGAGTC+AGG + Chr2:238246-238265 None:intergenic 40.0%
AATACCAATGTTCCCTATGC+AGG - Chr2:239861-239880 MsG0280006302.01.T01:intron 40.0%
ACAAGTGCAATGGCTCTTTA+AGG + Chr2:240690-240709 None:intergenic 40.0%
ACAGCATACTTCTAGTATCC+TGG + Chr2:238489-238508 None:intergenic 40.0%
ACTACAAGAAGCAGCAATTG+AGG - Chr2:240902-240921 MsG0280006302.01.T01:intron 40.0%
AGGGAGTTAGCTATGATCAA+TGG - Chr2:240922-240941 MsG0280006302.01.T01:intron 40.0%
ATATTCCCATTGTCCTGCAT+AGG + Chr2:239877-239896 None:intergenic 40.0%
ATATTGCCCATGTGTGAGAA+GGG + Chr2:239738-239757 None:intergenic 40.0%
ATGTTCCATAATAAAGCCGC+TGG + Chr2:238217-238236 None:intergenic 40.0%
CAAGGATCGAATTCGAACAA+AGG + Chr2:237625-237644 None:intergenic 40.0%
CAATGCATTACCTCTCTATG+GGG + Chr2:238321-238340 None:intergenic 40.0%
CAGATGGTCATAATCTAGCT+TGG + Chr2:241082-241101 None:intergenic 40.0%
CGGGAATTGATTATATCCTC+AGG + Chr2:240730-240749 None:intergenic 40.0%
CTACAAGAAGCAGCAATTGA+GGG - Chr2:240903-240922 MsG0280006302.01.T01:intron 40.0%
CTCTGTGAAGGATTCGATTA+AGG - Chr2:240203-240222 MsG0280006302.01.T01:intron 40.0%
CTTGAAAGGATCCCATTCTT+TGG + Chr2:239900-239919 None:intergenic 40.0%
GAAATCAGACGTATCTCATC+CGG - Chr2:238189-238208 MsG0280006302.01.T01:CDS 40.0%
GAACTTAAGATCAAGAAGGC+AGG + Chr2:238582-238601 None:intergenic 40.0%
GAATGTAGGGTTTACATCAG+AGG - Chr2:240174-240193 MsG0280006302.01.T01:intron 40.0%
GACATACTTGGACTCATACT+AGG + Chr2:240979-240998 None:intergenic 40.0%
GATTTCCTGAGTTAAGAGTC+GGG + Chr2:238175-238194 None:intergenic 40.0%
GCAATGCATTACCTCTCTAT+GGG + Chr2:238322-238341 None:intergenic 40.0%
GCCTAAAATAGACCCACAAT+GGG + Chr2:238743-238762 None:intergenic 40.0%
GGAGAAAATAGAGGAGTTAG+AGG - Chr2:239163-239182 MsG0280006302.01.T01:intron 40.0%
GGAGAAGAGAGAAGGAATAA+GGG - Chr2:239359-239378 MsG0280006302.01.T01:intron 40.0%
GGATATAATCAATTCCCGCT+TGG - Chr2:240732-240751 MsG0280006302.01.T01:CDS 40.0%
GTAAACCCTACATTCTGTCA+TGG + Chr2:240169-240188 None:intergenic 40.0%
GTGATAGGATGTTGAGGTAA+GGG + Chr2:238276-238295 None:intergenic 40.0%
TAAAGAGCCATTGCACTTGT+TGG - Chr2:240690-240709 MsG0280006302.01.T01:CDS 40.0%
TAGATATTTGGCCGAACTCT+TGG - Chr2:238101-238120 MsG0280006302.01.T01:intron 40.0%
TATATTGCCCATGTGTGAGA+AGG + Chr2:239739-239758 None:intergenic 40.0%
TATTCCCATTGTCCTGCATA+GGG + Chr2:239876-239895 None:intergenic 40.0%
TGATAGGATGTTGAGGTAAG+GGG + Chr2:238275-238294 None:intergenic 40.0%
TGCAATGCATTACCTCTCTA+TGG + Chr2:238323-238342 None:intergenic 40.0%
TGCCAACAATAAATCCACCA+CGG + Chr2:240319-240338 None:intergenic 40.0%
TGCCTAAAATAGACCCACAA+TGG + Chr2:238744-238763 None:intergenic 40.0%
TGTGGGAGAACTTGCAAAAA+GGG + Chr2:238147-238166 None:intergenic 40.0%
TTAAGAGTCGGGTAGATTGT+GGG + Chr2:238164-238183 None:intergenic 40.0%
TTATAGCACTAGGTTTCCGT+AGG + Chr2:238685-238704 None:intergenic 40.0%
TTGGCTGAGAGACAAAAGTT+GGG - Chr2:238120-238139 MsG0280006302.01.T01:intron 40.0%
TTGTGGGAGAACTTGCAAAA+AGG + Chr2:238148-238167 None:intergenic 40.0%
! AAATAGACCCACAATGGGTT+TGG + Chr2:238738-238757 None:intergenic 40.0%
! AATGATGGGAAAGTAAGGAG+AGG + Chr2:238021-238040 None:intergenic 40.0%
! ACACGGTTTGGACTTACATT+TGG + Chr2:240015-240034 None:intergenic 40.0%
! ACCCATTGTGGGTCTATTTT+AGG - Chr2:238739-238758 MsG0280006302.01.T01:CDS 40.0%
! AGGAAAATTGATGGCAAGAG+AGG - Chr2:239792-239811 MsG0280006302.01.T01:intron 40.0%
! CTTTCTAACACTTGGTAACC+TGG - Chr2:240860-240879 MsG0280006302.01.T01:intron 40.0%
!! AAGTTCTGAACAAGTCTTGG+AGG - Chr2:238596-238615 MsG0280006302.01.T01:intron 40.0%
!! TCTTTAAGGTGCTCATAACC+AGG + Chr2:240676-240695 None:intergenic 40.0%
!! TTCCGTGGTGGATTTATTGT+TGG - Chr2:240314-240333 MsG0280006302.01.T01:intron 40.0%
!! TTGCTAGACTTTGGCTCTTT+GGG - Chr2:238789-238808 MsG0280006302.01.T01:CDS 40.0%
AAATCCATAGGCCTGGTGAT+AGG + Chr2:238291-238310 None:intergenic 45.0%
AAGAGAGAGACGAAGAGAGA+AGG - Chr2:239297-239316 MsG0280006302.01.T01:intron 45.0%
AAGGATAGAAGATGGGAGAG+TGG - Chr2:237818-237837 MsG0280006302.01.T01:three_prime_UTR 45.0%
ACTAGCCCTAAAAAAGGGAG+AGG + Chr2:240840-240859 None:intergenic 45.0%
AGAACCTGATAGGAGAAGGA+GGG + Chr2:237969-237988 None:intergenic 45.0%
AGAGAGAGACGAAGAGAGAA+GGG - Chr2:239298-239317 MsG0280006302.01.T01:intron 45.0%
AGGGAGAAAAGAGATGAGAG+AGG - Chr2:239332-239351 MsG0280006302.01.T01:intron 45.0%
ATAGGATGTTGAGGTAAGGG+GGG + Chr2:238273-238292 None:intergenic 45.0%
ATCAAGTGATTCATCCTGCC+AGG + Chr2:240881-240900 None:intergenic 45.0%
ATCCTTTCAAGCATCTCCAG+TGG - Chr2:239909-239928 MsG0280006302.01.T01:intron 45.0%
ATCTACCCGACTCTTAACTC+AGG - Chr2:238167-238186 MsG0280006302.01.T01:CDS 45.0%
ATGAATGAATGGTGTGTGCG+TGG - Chr2:237730-237749 MsG0280006302.01.T01:three_prime_UTR 45.0%
ATGTTCCCTATGCAGGACAA+TGG - Chr2:239868-239887 MsG0280006302.01.T01:intron 45.0%
ATTTATGGTGGCCTTTCTGC+AGG - Chr2:241109-241128 MsG0280006302.01.T01:exon 45.0%
CGGAGTGAAAAAACACGGTT+TGG + Chr2:240027-240046 None:intergenic 45.0%
CTCTTCACTATAGGAGTCGT+CGG + Chr2:239958-239977 None:intergenic 45.0%
CTGCATCACTGCTTCGTATA+CGG + Chr2:238384-238403 None:intergenic 45.0%
CTTGGCTGAGAGACAAAAGT+TGG - Chr2:238119-238138 MsG0280006302.01.T01:intron 45.0%
GAAAAGAGATGAGAGAGGGA+AGG - Chr2:239337-239356 MsG0280006302.01.T01:intron 45.0%
GAAGAGAAGTGAGTGAGTGA+AGG + Chr2:237516-237535 None:intergenic 45.0%
GAAGGGGGATGTATTGGATT+AGG + Chr2:239721-239740 None:intergenic 45.0%
GAGTAGTAGAAGAGTCAGGA+TGG + Chr2:238242-238261 None:intergenic 45.0%
GATAGGATGTTGAGGTAAGG+GGG + Chr2:238274-238293 None:intergenic 45.0%
GGAACTGAAGGACACTACAA+TGG + Chr2:240298-240317 None:intergenic 45.0%
GGAAGCCATGACAGAATGTA+GGG - Chr2:240161-240180 MsG0280006302.01.T01:intron 45.0%
GGAGAGAAGGGAGAAAATAG+AGG - Chr2:239154-239173 MsG0280006302.01.T01:intron 45.0%
GGGAGAAAAGAGATGAGAGA+GGG - Chr2:239333-239352 MsG0280006302.01.T01:intron 45.0%
GGGAGAAGAGAGAAGGAATA+AGG - Chr2:239358-239377 MsG0280006302.01.T01:intron 45.0%
GGTGATAGGATGTTGAGGTA+AGG + Chr2:238277-238296 None:intergenic 45.0%
GTAATGGCAAGGTCACGAAA+GGG - Chr2:238712-238731 MsG0280006302.01.T01:intron 45.0%
GTGTTGCGCTTAGAAGAACT+AGG - Chr2:238507-238526 MsG0280006302.01.T01:intron 45.0%
GTTAAGAGTCGGGTAGATTG+TGG + Chr2:238165-238184 None:intergenic 45.0%
TAAATCCACCACGGAACTGA+AGG + Chr2:240310-240329 None:intergenic 45.0%
TACCTCAACATCCTATCACC+AGG - Chr2:238277-238296 MsG0280006302.01.T01:CDS 45.0%
TATTGCCCATGTGTGAGAAG+GGG + Chr2:239737-239756 None:intergenic 45.0%
TCACACATGGGCAATATACC+AGG - Chr2:239741-239760 MsG0280006302.01.T01:intron 45.0%
TCCTTTCAAGCATCTCCAGT+GGG - Chr2:239910-239929 MsG0280006302.01.T01:intron 45.0%
TGAATGAATGGTGTGTGCGT+GGG - Chr2:237731-237750 MsG0280006302.01.T01:three_prime_UTR 45.0%
TGCATCACTGCTTCGTATAC+GGG + Chr2:238383-238402 None:intergenic 45.0%
TGGAAGCCATGACAGAATGT+AGG - Chr2:240160-240179 MsG0280006302.01.T01:intron 45.0%
TGTAATGGCAAGGTCACGAA+AGG - Chr2:238711-238730 MsG0280006302.01.T01:intron 45.0%
TGTTCCCTATGCAGGACAAT+GGG - Chr2:239869-239888 MsG0280006302.01.T01:intron 45.0%
TTGTCCTGCATAGGGAACAT+TGG + Chr2:239868-239887 None:intergenic 45.0%
TTGTCTCTCAGCCAAGAGTT+CGG + Chr2:238115-238134 None:intergenic 45.0%
TTTATGGTGGCCTTTCTGCA+GGG - Chr2:241110-241129 MsG0280006302.01.T01:exon 45.0%
TTTCGTGACCTTGCCATTAC+AGG + Chr2:238712-238731 None:intergenic 45.0%
! GATCAATGGTACTTTGAGGG+AGG - Chr2:240936-240955 MsG0280006302.01.T01:intron 45.0%
! TTTCTAGTACTGCCACAGCA+TGG + Chr2:240759-240778 None:intergenic 45.0%
!! GGGCTAGTCTTTCTAACACT+TGG - Chr2:240852-240871 MsG0280006302.01.T01:intron 45.0%
!! GTTGCTAGACTTTGGCTCTT+TGG - Chr2:238788-238807 MsG0280006302.01.T01:CDS 45.0%
!! TGCTAGACTTTGGCTCTTTG+GGG - Chr2:238790-238809 MsG0280006302.01.T01:CDS 45.0%
!!! ACTGCACCTCTCCCTTTTTT+AGG - Chr2:240831-240850 MsG0280006302.01.T01:intron 45.0%
!!! CTGCACCTCTCCCTTTTTTA+GGG - Chr2:240832-240851 MsG0280006302.01.T01:intron 45.0%
!! AAAAAAGTAAAAAAAAAAAA+AGG + Chr2:241292-241311 None:intergenic 5.0%
!! AATAATAATAATAAAATGAT+GGG + Chr2:238035-238054 None:intergenic 5.0%
!! TAATAATAATAATAAAATGA+TGG + Chr2:238036-238055 None:intergenic 5.0%
!! TTATTATTATTTATTAAACA+AGG + Chr2:237643-237662 None:intergenic 5.0%
AAGAGAGAAGGGAGAGAGAG+AGG - Chr2:239309-239328 MsG0280006302.01.T01:intron 50.0%
ACATCCCCCTTCTCACACAT+GGG - Chr2:239729-239748 MsG0280006302.01.T01:intron 50.0%
ACATCCTATCACCAGGCCTA+TGG - Chr2:238284-238303 MsG0280006302.01.T01:intron 50.0%
ACCCACTGGAGATGCTTGAA+AGG + Chr2:239914-239933 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - Chr2:239190-239209 MsG0280006302.01.T01:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+GGG - Chr2:239190-239209 MsG0280006302.01.T01:intron 50.0%
AGAGAGAGGGGAGAAAAGAG+AGG - Chr2:239255-239274 MsG0280006302.01.T01:intron 50.0%
AGAGAGGAGAGAGAGAGAGA+AGG - Chr2:239240-239259 MsG0280006302.01.T01:intron 50.0%
AGAGGAGAGAGAGAGAGAGA+GGG - Chr2:239242-239261 MsG0280006302.01.T01:intron 50.0%
AGGGTTTACATCAGAGGCTG+TGG - Chr2:240180-240199 MsG0280006302.01.T01:intron 50.0%
ATTGCCCATGTGTGAGAAGG+GGG + Chr2:239736-239755 None:intergenic 50.0%
CATAATAAAGCCGCTGGCAC+CGG + Chr2:238211-238230 None:intergenic 50.0%
CATGGTCATGGACATGGACA+TGG - Chr2:237940-237959 MsG0280006302.01.T01:CDS 50.0%
CGGGAACTCGTTGAAAAGAG+TGG - Chr2:240140-240159 MsG0280006302.01.T01:intron 50.0%
CGTATACGAAGCAGTGATGC+AGG - Chr2:238382-238401 MsG0280006302.01.T01:intron 50.0%
CTCATACTAGGGCTCATGCT+TGG + Chr2:240967-240986 None:intergenic 50.0%
GAAAGGGCCAAACCCATTGT+GGG - Chr2:238728-238747 MsG0280006302.01.T01:CDS 50.0%
GAGAACCTGATAGGAGAAGG+AGG + Chr2:237970-237989 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - Chr2:239191-239210 MsG0280006302.01.T01:intron 50.0%
GAGAGGAGAGAGAGAGAGAA+GGG - Chr2:239272-239291 MsG0280006302.01.T01:intron 50.0%
GATAGAGAGATGGGGAAGAG+AGG - Chr2:239129-239148 MsG0280006302.01.T01:intron 50.0%
GCAGTGATGCAGGTCTTCTA+AGG - Chr2:238392-238411 MsG0280006302.01.T01:intron 50.0%
GGAAGAGAGGAAGGAGAGAA+GGG - Chr2:239142-239161 MsG0280006302.01.T01:intron 50.0%
GGAATGAAACGTGCCAAGAC+AGG - Chr2:241015-241034 MsG0280006302.01.T01:CDS 50.0%
GTCCATGTCCATGACCATGT+GGG + Chr2:237939-237958 None:intergenic 50.0%
GTGTGAGAAGGGGGATGTAT+TGG + Chr2:239727-239746 None:intergenic 50.0%
TACATCCCCCTTCTCACACA+TGG - Chr2:239728-239747 MsG0280006302.01.T01:intron 50.0%
TCCATGTCCATGACCATGTG+GGG + Chr2:237938-237957 None:intergenic 50.0%
TCGGAGAACCTGATAGGAGA+AGG + Chr2:237973-237992 None:intergenic 50.0%
TGTAGTGTCCTTCAGTTCCG+TGG - Chr2:240299-240318 MsG0280006302.01.T01:intron 50.0%
TGTCCATGTCCATGACCATG+TGG + Chr2:237940-237959 None:intergenic 50.0%
TTCAAGCATCTCCAGTGGGT+TGG - Chr2:239914-239933 MsG0280006302.01.T01:intron 50.0%
! AGAGCCATTGCACTTGTTGG+TGG - Chr2:240693-240712 MsG0280006302.01.T01:CDS 50.0%
! CTAACACTTGGTAACCTGGC+AGG - Chr2:240864-240883 MsG0280006302.01.T01:intron 50.0%
AGAGAAGGGAGAGAGAGAGG+AGG - Chr2:239312-239331 MsG0280006302.01.T01:intron 55.0%
AGAGAGAGAGAGAGAGAGGG+GGG - Chr2:239212-239231 MsG0280006302.01.T01:intron 55.0%
AGAGAGGGGGGAGAAAAGAG+AGG - Chr2:239224-239243 MsG0280006302.01.T01:intron 55.0%
AGTGTCCTTCAGTTCCGTGG+TGG - Chr2:240302-240321 MsG0280006302.01.T01:intron 55.0%
CCAGGCCTATGGATTTCGAC+TGG - Chr2:238295-238314 MsG0280006302.01.T01:intron 55.0%
CCAGTCGAAATCCATAGGCC+TGG + Chr2:238298-238317 None:intergenic 55.0%
CCATGTCCATGACCATGTGG+GGG + Chr2:237937-237956 None:intergenic 55.0%
CGAAAGGGCCAAACCCATTG+TGG - Chr2:238727-238746 MsG0280006302.01.T01:CDS 55.0%
CTGGGGTCATCTTCCTGTCT+TGG + Chr2:241031-241050 None:intergenic 55.0%
GACTCCCTCCTTCTCCTATC+AGG - Chr2:237962-237981 MsG0280006302.01.T01:CDS 55.0%
GAGAAGGGAGAGAGAGAGGA+GGG - Chr2:239313-239332 MsG0280006302.01.T01:intron 55.0%
GAGAGAGAGAGAGAGAGAGG+GGG - Chr2:239211-239230 MsG0280006302.01.T01:intron 55.0%
GAGAGATGGGGAAGAGAGGA+AGG - Chr2:239133-239152 MsG0280006302.01.T01:intron 55.0%
GAGAGGAGAGAGAGAGAGAG+AGG - Chr2:239241-239260 MsG0280006302.01.T01:intron 55.0%
GAGAGTGGATCCCCCAATCT+GGG - Chr2:237833-237852 MsG0280006302.01.T01:three_prime_UTR 55.0%
GAGGAGAGAGAGAGAGAGAG+GGG - Chr2:239243-239262 MsG0280006302.01.T01:intron 55.0%
GAGGGAAGGGAGAAGAGAGA+AGG - Chr2:239351-239370 MsG0280006302.01.T01:intron 55.0%
GCCTCCACCAACAAGTGCAA+TGG + Chr2:240700-240719 None:intergenic 55.0%
GGCCTGGTGATAGGATGTTG+AGG + Chr2:238282-238301 None:intergenic 55.0%
GGGAAGAGAGGAAGGAGAGA+AGG - Chr2:239141-239160 MsG0280006302.01.T01:intron 55.0%
TCAGGTTCTCCGATCGCGAA+AGG - Chr2:237980-237999 MsG0280006302.01.T01:CDS 55.0%
TCGCGATCGGAGAACCTGAT+AGG + Chr2:237979-237998 None:intergenic 55.0%
TGAGGTAAGGGGGGCCTAAA+AGG + Chr2:238264-238283 None:intergenic 55.0%
TGGGGCCAGTCGAAATCCAT+AGG + Chr2:238303-238322 None:intergenic 55.0%
! CAGGAGCATGAGGAGGGAAT+TGG + Chr2:237888-237907 None:intergenic 55.0%
! CTTTTCAACGAGTTCCCGCG+AGG + Chr2:240138-240157 None:intergenic 55.0%
! GCCATTGCACTTGTTGGTGG+AGG - Chr2:240696-240715 MsG0280006302.01.T01:CDS 55.0%
! GGTGATTGACTCTGGTGTCG+TGG - Chr2:237486-237505 MsG0280006302.01.T01:three_prime_UTR 55.0%
! TGTGGCGTGGTGATTGACTC+TGG - Chr2:237478-237497 MsG0280006302.01.T01:three_prime_UTR 55.0%
! TTTCGACTGGCCCCATAGAG+AGG - Chr2:238308-238327 MsG0280006302.01.T01:intron 55.0%
!! CATCTCCAGTGGGTTGGCAT+GGG - Chr2:239920-239939 MsG0280006302.01.T01:intron 55.0%
!! CGGTGCCAGCGGCTTTATTA+TGG - Chr2:238209-238228 MsG0280006302.01.T01:CDS 55.0%
ATGAGGAGGAGGAGGAGGAG+CGG + Chr2:237914-237933 None:intergenic 60.0%
CATCGACCAGCCCTGCAGAA+AGG + Chr2:241123-241142 None:intergenic 60.0%
CCATGACCATGTGGGGGATG+AGG + Chr2:237931-237950 None:intergenic 60.0%
CCCCCACATGGTCATGGACA+TGG - Chr2:237934-237953 MsG0280006302.01.T01:CDS 60.0%
CCTCATCCCCCACATGGTCA+TGG - Chr2:237928-237947 MsG0280006302.01.T01:CDS 60.0%
CTGCCACAGCATGGTCCAAG+CGG + Chr2:240750-240769 None:intergenic 60.0%
GCGTGTGGAGTTTGGCAGTG+TGG - Chr2:237460-237479 MsG0280006302.01.T01:three_prime_UTR 60.0%
GCTTCGCTGCGTGTGGAGTT+TGG - Chr2:237452-237471 MsG0280006302.01.T01:three_prime_UTR 60.0%
GGAGAGTGGATCCCCCAATC+TGG - Chr2:237832-237851 MsG0280006302.01.T01:three_prime_UTR 60.0%
GGAGTCGTCGGAACTCCTTG+TGG + Chr2:239946-239965 None:intergenic 60.0%
GGTGGAGGCAGAGTTTCCTG+AGG - Chr2:240711-240730 MsG0280006302.01.T01:CDS 60.0%
TGACCATGTGGGGGATGAGG+AGG + Chr2:237928-237947 None:intergenic 60.0%
TGCCACAGCATGGTCCAAGC+GGG + Chr2:240749-240768 None:intergenic 60.0%
TGGAGTTTGGCAGTGTGGCG+TGG - Chr2:237465-237484 MsG0280006302.01.T01:three_prime_UTR 60.0%
TTCCCGCTTGGACCATGCTG+TGG - Chr2:240744-240763 MsG0280006302.01.T01:CDS 60.0%
! CAGAGGCTGTGGCTCTGTGA+AGG - Chr2:240191-240210 MsG0280006302.01.T01:intron 60.0%
! CGTATCTCATCCGGTGCCAG+CGG - Chr2:238198-238217 MsG0280006302.01.T01:CDS 60.0%
!! CTTTCTGCAGGGCTGGTCGA+TGG - Chr2:241121-241140 MsG0280006302.01.T01:intron 60.0%
!! GCATCTCCAGTGGGTTGGCA+TGG - Chr2:239919-239938 MsG0280006302.01.T01:intron 60.0%
!! GGTCGAATTCTGGGACCTCG+CGG - Chr2:240120-240139 MsG0280006302.01.T01:intron 60.0%
!! GTCGAATTCTGGGACCTCGC+GGG - Chr2:240121-240140 MsG0280006302.01.T01:intron 60.0%
CCATGTGGGGGATGAGGAGG+AGG + Chr2:237925-237944 None:intergenic 65.0%
CCTCCTCCTCATCCCCCACA+TGG - Chr2:237922-237941 MsG0280006302.01.T01:CDS 65.0%
TGAGGAGGAGGAGGAGGAGC+GGG + Chr2:237913-237932 None:intergenic 65.0%
TGGTGGCCTTTCTGCAGGGC+TGG - Chr2:241114-241133 MsG0280006302.01.T01:exon 65.0%
TGTGGCCCATGCCAACCCAC+TGG + Chr2:239928-239947 None:intergenic 65.0%
TGTGGGGGATGAGGAGGAGG+AGG + Chr2:237922-237941 None:intergenic 65.0%
! CGGGAGCAGGAGCATGAGGA+GGG + Chr2:237894-237913 None:intergenic 65.0%
!! GTGGGTTGGCATGGGCCACA+AGG - Chr2:239928-239947 MsG0280006302.01.T01:intron 65.0%
GGGGGATGAGGAGGAGGAGG+AGG + Chr2:237919-237938 None:intergenic 70.0%
! GCGGGAGCAGGAGCATGAGG+AGG + Chr2:237895-237914 None:intergenic 70.0%
! GGAGCGGGAGCAGGAGCATG+AGG + Chr2:237898-237917 None:intergenic 70.0%
GGAGGAGGAGGAGCGGGAGC+AGG + Chr2:237907-237926 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 237446 241502 237446 ID=MsG0280006302.01;Name=MsG0280006302.01
Chr2 mRNA 237446 241502 237446 ID=MsG0280006302.01.T01;Parent=MsG0280006302.01;Name=MsG0280006302.01.T01;_AED=0.33;_eAED=0.33;_QI=132|1|1|1|0.83|0.71|7|458|318
Chr2 exon 237446 238062 237446 ID=MsG0280006302.01.T01:exon:517;Parent=MsG0280006302.01.T01
Chr2 exon 238153 238296 238153 ID=MsG0280006302.01.T01:exon:516;Parent=MsG0280006302.01.T01
Chr2 exon 238724 238843 238724 ID=MsG0280006302.01.T01:exon:515;Parent=MsG0280006302.01.T01
Chr2 exon 238931 239065 238931 ID=MsG0280006302.01.T01:exon:514;Parent=MsG0280006302.01.T01
Chr2 exon 240619 240844 240619 ID=MsG0280006302.01.T01:exon:513;Parent=MsG0280006302.01.T01
Chr2 exon 240947 241139 240947 ID=MsG0280006302.01.T01:exon:512;Parent=MsG0280006302.01.T01
Chr2 exon 241391 241502 241391 ID=MsG0280006302.01.T01:exon:511;Parent=MsG0280006302.01.T01
Chr2 five_prime_UTR 241391 241502 241391 ID=MsG0280006302.01.T01:five_prime_utr;Parent=MsG0280006302.01.T01
Chr2 five_prime_UTR 241120 241139 241120 ID=MsG0280006302.01.T01:five_prime_utr;Parent=MsG0280006302.01.T01
Chr2 CDS 240947 241119 240947 ID=MsG0280006302.01.T01:cds;Parent=MsG0280006302.01.T01
Chr2 CDS 240619 240844 240619 ID=MsG0280006302.01.T01:cds;Parent=MsG0280006302.01.T01
Chr2 CDS 238931 239065 238931 ID=MsG0280006302.01.T01:cds;Parent=MsG0280006302.01.T01
Chr2 CDS 238724 238843 238724 ID=MsG0280006302.01.T01:cds;Parent=MsG0280006302.01.T01
Chr2 CDS 238153 238296 238153 ID=MsG0280006302.01.T01:cds;Parent=MsG0280006302.01.T01
Chr2 CDS 237904 238062 237904 ID=MsG0280006302.01.T01:cds;Parent=MsG0280006302.01.T01
Chr2 three_prime_UTR 237446 237903 237446 ID=MsG0280006302.01.T01:three_prime_utr;Parent=MsG0280006302.01.T01
Gene Sequence

>MsG0280006302.01.T01

ATGGGAGAGTGGATCCCCCAATCTGGGAATAATAATAATAATAATGGTAGTTATTTCCAATTCCCTCCTCATGCTCCTGCTCCCGCTCCTCCTCCTCCTCCTCATCCCCCACATGGTCATGGACATGGACATGGACTCCCTCCTTCTCCTATCAGGTTCTCCGATCGCGAAAGATATTTGGCCGAACTCTTGGCTGAGAGACAAAAGTTGGGACCCTTTTTGCAAGTTCTCCCACAATCTACCCGACTCTTAACTCAGGAAATCAGACGTATCTCATCCGGTGCCAGCGGCTTTATTATGGAACATGACCATCCTGACTCTTCTACTACTCCTTTTAGGCCCCCCTTACCTCAACATCCTATCACCAGGCCTATGGATTTCGACTGGCCCCATAGAGAGGACAATGGGAATATCCAAAGAATGGGATCCTTTCAAGCATCTCCAGTGGGTTGGCATGGGCCACAAGGAGTTCCGACGACTCCTATAGTGAAGAGAGTTATCAGGCTTGATGTCCCTGTCGACAAATATCCAAATCAGTATAATTTTGTTGGTCGAATTCTGGGACCTCGCGGGAACTCGTTGAAAAGAGTGGAAGCCATGACAGAATGTAGGGTTTACATCAGAGGCTGTGGCTCTGTGAAGGATTCGATTAAGGAAGAGAAGCTTAAAGATAAACCTGGTTATGAGCACCTTAAAGAGCCATTGCACTTGTTGGTGGAGGCAGAGTTTCCTGAGGATATAATCAATTCCCGCTTGGACCATGCTGTGGCAGTACTAGAAAATCTTTTGAAGCCTGTGGATGAATCACTTGATCACTACAAGAAGCAGCAATTGAGGGAGTTAGCTATGATCAATGGTACTTTGAGGGAGGAAAGTCCAAGCATGAGCCCTAGTATGAGTCCAAGTATGTCACCTTTCAATAGTAATGGAATGAAACGTGCCAAGACAGGAAGATGA

Protein sequence

>MsG0280006302.01.T01

MGEWIPQSGNNNNNNGSYFQFPPHAPAPAPPPPPHPPHGHGHGHGLPPSPIRFSDRERYLAELLAERQKLGPFLQVLPQSTRLLTQEIRRISSGASGFIMEHDHPDSSTTPFRPPLPQHPITRPMDFDWPHREDNGNIQRMGSFQASPVGWHGPQGVPTTPIVKRVIRLDVPVDKYPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLKEPLHLLVEAEFPEDIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGTLREESPSMSPSMSPSMSPFNSNGMKRAKTGR*