AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040834.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040834.01.T01 MTR_7g099410 87.770 139 15 1 125 263 594 730 1.55e-74 244
MsG0780040834.01.T01 MTR_7g099410 53.425 73 30 2 52 121 104 175 5.11e-12 66.6
MsG0780040834.01.T01 MTR_7g099410 87.770 139 15 1 125 263 675 811 3.47e-74 244
MsG0780040834.01.T01 MTR_7g099410 67.164 67 4 2 13 79 26 74 1.63e-16 80.1
MsG0780040834.01.T01 MTR_7g099410 53.425 73 30 2 52 121 185 256 5.93e-12 66.2
MsG0780040834.01.T01 MTR_1g069190 63.636 121 43 1 143 262 550 670 8.63e-40 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040834.01.T01 AT4G28760 44.138 145 63 6 140 279 649 780 1.07e-22 98.2
MsG0780040834.01.T01 AT4G28760 44.138 145 63 6 140 279 649 780 1.07e-22 98.2
MsG0780040834.01.T01 AT2G20240 44.348 115 51 4 156 269 498 600 1.37e-17 83.2
MsG0780040834.01.T01 AT5G43880 42.537 134 66 3 146 279 563 685 8.09e-17 80.9
MsG0780040834.01.T01 AT5G43880 42.537 134 66 3 146 279 563 685 8.09e-17 80.9
MsG0780040834.01.T01 AT5G43880 42.537 134 66 3 146 279 563 685 8.09e-17 80.9
MsG0780040834.01.T01 AT5G43880 42.537 134 66 3 146 279 563 685 8.09e-17 80.9

Find 126 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTTGCTTCCATGAATTT+TGG 0.141584 7:-83140942 None:intergenic
TGGGATTTGAAATGGATATT+TGG 0.167673 7:+83143845 MsG0780040834.01.T01:three_prime_UTR
TAAAGGGTGGGTTGAGCTTA+TGG 0.206293 7:+83143825 MsG0780040834.01.T01:three_prime_UTR
TCAGTAGCATTTAATAAATT+AGG 0.239479 7:-83144042 None:intergenic
TAGTGGCATGAGGTCTGTTT+GGG 0.254407 7:+83143741 MsG0780040834.01.T01:three_prime_UTR
AAACCAATGAAGGCTTTAAT+TGG 0.261992 7:-83143325 None:intergenic
GGCTTTGACATGGTCAATTC+AGG 0.263143 7:-83142952 None:intergenic
CGGATTAGAAAGTTCCTTAA+TGG 0.284283 7:+83143621 MsG0780040834.01.T01:three_prime_UTR
CTAGTGGCATGAGGTCTGTT+TGG 0.294493 7:+83143740 MsG0780040834.01.T01:three_prime_UTR
ACTCCACAACCTGCCCATTA+AGG 0.313097 7:-83143635 None:intergenic
GGGATTTGAAATGGATATTT+GGG 0.336959 7:+83143846 MsG0780040834.01.T01:three_prime_UTR
AAAGGGTGGGTTGAGCTTAT+GGG 0.338522 7:+83143826 MsG0780040834.01.T01:three_prime_UTR
TTTGCATTTACAACAGTAGA+AGG 0.341551 7:-83139665 None:intergenic
CTTCGCTTTGCTTCGTGTAC+AGG 0.352408 7:-83143529 None:intergenic
CTCTTATACGCCAAAATTCA+TGG 0.371444 7:+83140932 MsG0780040834.01.T01:CDS
TAATGGGCAGGTTGTGGAGT+GGG 0.387786 7:+83143638 MsG0780040834.01.T01:three_prime_UTR
TGAGCTTATGGGATTTGAAA+TGG 0.388874 7:+83143837 MsG0780040834.01.T01:three_prime_UTR
TTTAATAAATTAGGTTAAGT+AGG 0.390124 7:-83144033 None:intergenic
AAAGCCTTCATTGGTTTCCT+TGG 0.396749 7:+83143331 MsG0780040834.01.T01:CDS
GGAGGTTCTAAAACTGAGAT+TGG 0.405864 7:-83143018 None:intergenic
GTACCAATTAAAGCCTTCAT+TGG 0.408302 7:+83143322 MsG0780040834.01.T01:CDS
TAGATGTCAACTCCTTCATA+TGG 0.415286 7:-83143720 None:intergenic
ATGATCGCGGTGCGGTTTAT+CGG 0.417070 7:-83139699 None:intergenic
ATTGACAAATCACCACCTAT+AGG 0.417115 7:+83143245 MsG0780040834.01.T01:CDS
GGATTAGAAAGTTCCTTAAT+GGG 0.418900 7:+83143622 MsG0780040834.01.T01:three_prime_UTR
ACTAATTAAATTACTAGTTA+CGG 0.420775 7:+83143601 MsG0780040834.01.T01:three_prime_UTR
AGGACTGCAAGTCCTTCATT+TGG 0.422950 7:+83140245 MsG0780040834.01.T01:CDS
ACTTTATTACAGATCGTTGT+TGG 0.425530 7:-83141030 None:intergenic
TTCCTGGATGTCTGGGAAGA+TGG 0.426575 7:+83139623 MsG0780040834.01.T01:CDS
AGAAAAGAGGTCGTGGGTAA+AGG 0.432505 7:+83143808 MsG0780040834.01.T01:three_prime_UTR
GAAAAGAGGTCGTGGGTAAA+GGG 0.433603 7:+83143809 MsG0780040834.01.T01:three_prime_UTR
AGGTTCATTGTCATTGAGAT+TGG 0.436139 7:-83143503 None:intergenic
TCCCTCAATGTTGGATCCAA+TGG 0.437770 7:-83143472 None:intergenic
CTGGAAATCCATGGCACCCT+GGG 0.438188 7:-83142973 None:intergenic
GAGGTGCACCTTCCTATTGG+TGG 0.439401 7:+83143685 MsG0780040834.01.T01:three_prime_UTR
AATGGGCAGGTTGTGGAGTG+GGG 0.440726 7:+83143639 MsG0780040834.01.T01:three_prime_UTR
CAGTGGTTGATTTGACAGGC+AGG 0.445208 7:+83143913 MsG0780040834.01.T01:three_prime_UTR
GATACAATCAAACCACCAAT+AGG 0.454608 7:-83143697 None:intergenic
TCAGAGGTGCACCTTCCTAT+TGG 0.456002 7:+83143682 MsG0780040834.01.T01:three_prime_UTR
GTTCCTTAATGGGCAGGTTG+TGG 0.456811 7:+83143632 MsG0780040834.01.T01:three_prime_UTR
TGGCATGAGGTCTGTTTGGG+GGG 0.464722 7:+83143744 MsG0780040834.01.T01:three_prime_UTR
AGATTGGACTCGGCTGATCC+TGG 0.465567 7:-83143002 None:intergenic
CTTCCCAGACATCCAGGAAA+AGG 0.467555 7:-83139619 None:intergenic
TTTGCTTCGTGTACAGGTTG+AGG 0.473135 7:-83143523 None:intergenic
TACCATCTTCCCAGACATCC+AGG 0.483746 7:-83139625 None:intergenic
AAATGCAGCTCATGAGTCCT+TGG 0.484284 7:+83143053 MsG0780040834.01.T01:CDS
GTTCGAGCTATTGATCCTAT+AGG 0.487955 7:-83143260 None:intergenic
CACAAGAATCATCCCATGAG+AGG 0.492500 7:-83143283 None:intergenic
ACTGGAAATCCATGGCACCC+TGG 0.492769 7:-83142974 None:intergenic
GGGGCAGTGGTTGATTTGAC+AGG 0.492851 7:+83143909 MsG0780040834.01.T01:three_prime_UTR
GAAGGTGCACCTCTGATCCT+TGG 0.494627 7:-83143675 None:intergenic
CATCTAGAATAAAACGAGTC+AGG 0.495507 7:-83143433 None:intergenic
GCATTCTCTTGAAAGTCCAT+TGG 0.496290 7:+83143456 MsG0780040834.01.T01:CDS
TAGAAAGTTCCTTAATGGGC+AGG 0.497508 7:+83143626 MsG0780040834.01.T01:three_prime_UTR
AGAAGTCATCAGATGTTTCG+AGG 0.503282 7:+83140225 MsG0780040834.01.T01:CDS
TTTGATTGTATCCCATATGA+AGG 0.503783 7:+83143708 MsG0780040834.01.T01:three_prime_UTR
TTGTGGGGACAGCAACAGCC+TGG 0.504126 7:+83143768 MsG0780040834.01.T01:three_prime_UTR
CAATAGCTCGAACCCTCTCA+TGG 0.504147 7:+83143270 MsG0780040834.01.T01:CDS
ATGGGCAGGTTGTGGAGTGG+GGG 0.511735 7:+83143640 MsG0780040834.01.T01:three_prime_UTR
CAAGTCCTTCATTTGGTGAT+CGG 0.512783 7:+83140252 MsG0780040834.01.T01:CDS
GCGTATTTGTCCCTCAATGT+TGG 0.513145 7:-83143481 None:intergenic
GTGGCATGAGGTCTGTTTGG+GGG 0.513197 7:+83143743 MsG0780040834.01.T01:three_prime_UTR
AAGAGGTCGTGGGTAAAGGG+TGG 0.514097 7:+83143812 MsG0780040834.01.T01:three_prime_UTR
AAGAACTTGTGGAGGGGCAG+TGG 0.516972 7:+83143896 MsG0780040834.01.T01:three_prime_UTR
TTCCTTGGACACGAAGGTAG+AGG 0.521100 7:+83143346 MsG0780040834.01.T01:CDS
AGATTCATTACTATAAAAGA+AGG 0.522583 7:-83144086 None:intergenic
AAAGGAGTTTGATGAAACCT+TGG 0.525676 7:+83140995 MsG0780040834.01.T01:CDS
ATCCTCTACCTTCGTGTCCA+AGG 0.527264 7:-83143348 None:intergenic
TGAAATGGATATTTGGGTGA+AGG 0.527491 7:+83143852 MsG0780040834.01.T01:three_prime_UTR
CTGATCCTTGGAGCCTTCTG+TGG 0.531016 7:-83143663 None:intergenic
TTAATGGGCAGGTTGTGGAG+TGG 0.533107 7:+83143637 MsG0780040834.01.T01:three_prime_UTR
TGGCACCCTGGGCTTTGACA+TGG 0.536764 7:-83142962 None:intergenic
GGACAGCAACAGCCTGGTGG+TGG 0.537553 7:+83143774 MsG0780040834.01.T01:three_prime_UTR
AATTGACCATGTCAAAGCCC+AGG 0.538303 7:+83142956 MsG0780040834.01.T01:CDS
TGTCAAAGCCCAGGGTGCCA+TGG 0.539757 7:+83142965 MsG0780040834.01.T01:CDS
ATTTGGGTGAAGGAAGTAGA+GGG 0.542086 7:+83143862 MsG0780040834.01.T01:three_prime_UTR
CAGAAATTACTATCAGCTGC+TGG 0.542214 7:+83143392 MsG0780040834.01.T01:CDS
CAAAGCAGTAAGCCACATCA+AGG 0.544060 7:-83143957 None:intergenic
TGTTGTCAGAAAAGAGGTCG+TGG 0.546009 7:+83143801 MsG0780040834.01.T01:three_prime_UTR
TCTATCCGATCACCAAATGA+AGG 0.546916 7:-83140257 None:intergenic
AGATGTCAACTCCTTCATAT+GGG 0.551170 7:-83143719 None:intergenic
TTTGACAGGCAGGGTCTGAA+TGG 0.551726 7:+83143923 MsG0780040834.01.T01:three_prime_UTR
ATGGATTTCCAGTGAAAACC+AGG 0.555895 7:+83142984 MsG0780040834.01.T01:CDS
TTATCTATTCTGTAGGATCA+CGG 0.556529 7:+83143201 MsG0780040834.01.T01:intron
AATGAAGGCTTTAATTGGTA+CGG 0.558472 7:-83143320 None:intergenic
AGTGGTTGATTTGACAGGCA+GGG 0.558622 7:+83143914 MsG0780040834.01.T01:three_prime_UTR
AGTGGCATGAGGTCTGTTTG+GGG 0.558726 7:+83143742 MsG0780040834.01.T01:three_prime_UTR
GTTGGAGCTTAAAACTTCCA+AGG 0.564108 7:-83141012 None:intergenic
TATCTATTCTGTAGGATCAC+GGG 0.566931 7:+83143202 MsG0780040834.01.T01:intron
AAACCGCACCGCGATCATCA+TGG 0.568228 7:+83139704 MsG0780040834.01.T01:CDS
TCCATTGGATCCAACATTGA+GGG 0.571482 7:+83143471 MsG0780040834.01.T01:CDS
TGTATGAAGAGTGGTCAGCT+TGG 0.579242 7:+83143078 MsG0780040834.01.T01:CDS
GAAATTGCTAGAAGAACTTG+TGG 0.582282 7:+83143885 MsG0780040834.01.T01:three_prime_UTR
TGACAACAGTCTCCACCACC+AGG 0.582793 7:-83143786 None:intergenic
GGAGACTGTTGTCAGAAAAG+AGG 0.585075 7:+83143795 MsG0780040834.01.T01:three_prime_UTR
TCTAAAACTGAGATTGGACT+CGG 0.585099 7:-83143012 None:intergenic
GTGTCCAAGGAAACCAATGA+AGG 0.585519 7:-83143335 None:intergenic
ATGAAGGAGTTGACATCTAG+TGG 0.585872 7:+83143724 MsG0780040834.01.T01:three_prime_UTR
AGAGGTCGTGGGTAAAGGGT+GGG 0.591528 7:+83143813 MsG0780040834.01.T01:three_prime_UTR
TGAGAGGTTACGTCAATCAA+AGG 0.594820 7:+83140977 MsG0780040834.01.T01:CDS
GTCCATTGGATCCAACATTG+AGG 0.598130 7:+83143470 MsG0780040834.01.T01:CDS
CAATCAAACCACCAATAGGA+AGG 0.599516 7:-83143693 None:intergenic
ACCACTCTTCATACAGTCCA+AGG 0.602273 7:-83143070 None:intergenic
CAGAAGGCTCCAAGGATCAG+AGG 0.606808 7:+83143666 MsG0780040834.01.T01:three_prime_UTR
AATAGCTCGAACCCTCTCAT+GGG 0.606897 7:+83143271 MsG0780040834.01.T01:CDS
TTTGGGTGAAGGAAGTAGAG+GGG 0.616565 7:+83143863 MsG0780040834.01.T01:three_prime_UTR
TGCTAGAAGAACTTGTGGAG+GGG 0.620769 7:+83143890 MsG0780040834.01.T01:three_prime_UTR
GTTGAATTGAATCCTTGATG+TGG 0.627761 7:+83143945 MsG0780040834.01.T01:three_prime_UTR
ATTGACCATGTCAAAGCCCA+GGG 0.629405 7:+83142957 MsG0780040834.01.T01:CDS
TTGCTAGAAGAACTTGTGGA+GGG 0.629725 7:+83143889 MsG0780040834.01.T01:three_prime_UTR
GGATGATTCTTGTGCAGAGG+TGG 0.629970 7:+83143292 MsG0780040834.01.T01:CDS
ATGGGATGATTCTTGTGCAG+AGG 0.630661 7:+83143289 MsG0780040834.01.T01:CDS
ACGAAGCAAAGCGAAGACAG+AGG 0.633212 7:+83143536 MsG0780040834.01.T01:three_prime_UTR
TGTATTCGATTATTAACACA+TGG 0.633419 7:+83144009 MsG0780040834.01.T01:three_prime_UTR
TATTTGGGTGAAGGAAGTAG+AGG 0.639162 7:+83143861 MsG0780040834.01.T01:three_prime_UTR
ATTGCTAGAAGAACTTGTGG+AGG 0.639515 7:+83143888 MsG0780040834.01.T01:three_prime_UTR
CGAGCTATTGATCCTATAGG+TGG 0.641808 7:-83143257 None:intergenic
ACAAGAATCATCCCATGAGA+GGG 0.652020 7:-83143282 None:intergenic
TCCTTGGACTGTATGAAGAG+TGG 0.654292 7:+83143069 MsG0780040834.01.T01:CDS
GTTGTCAGAAAAGAGGTCGT+GGG 0.654455 7:+83143802 MsG0780040834.01.T01:three_prime_UTR
AGCGTCTGTCTACAGATGAG+AGG 0.655922 7:+83140961 MsG0780040834.01.T01:CDS
ATTGGTTTCCTTGGACACGA+AGG 0.675866 7:+83143340 MsG0780040834.01.T01:CDS
AGTTGACATCTAGTGGCATG+AGG 0.681876 7:+83143731 MsG0780040834.01.T01:three_prime_UTR
AGAGATGACCATGATGATCG+CGG 0.687608 7:-83139712 None:intergenic
TGGGGACAGCAACAGCCTGG+TGG 0.698797 7:+83143771 MsG0780040834.01.T01:three_prime_UTR
TGACCATGATGATCGCGGTG+CGG 0.734287 7:-83139707 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATTAAAACTACA+AGG - Chr7:83139950-83139969 None:intergenic 10.0%
!! TACAAAGATATTATGAAATA+TGG + Chr7:83140772-83140791 MsG0780040834.01.T01:intron 15.0%
!! TTTAATAAATTAGGTTAAGT+AGG - Chr7:83144036-83144055 None:intergenic 15.0%
!!! TTTTTTTTTCCCATTTTTAT+GGG + Chr7:83140432-83140451 MsG0780040834.01.T01:intron 15.0%
!!! TTTTTTTTTTCCCATTTTTA+TGG + Chr7:83140431-83140450 MsG0780040834.01.T01:intron 15.0%
!! AGATTCATTACTATAAAAGA+AGG - Chr7:83144089-83144108 None:intergenic 20.0%
!! AGTATGAAATCATCATTTAA+AGG + Chr7:83141892-83141911 MsG0780040834.01.T01:intron 20.0%
!! ATAAAAAAAAGCAATTGACT+GGG - Chr7:83140086-83140105 None:intergenic 20.0%
!! ATCTTCAAATAAGAAGTAAA+CGG + Chr7:83140485-83140504 MsG0780040834.01.T01:intron 20.0%
!! GTATGAAATCATCATTTAAA+GGG + Chr7:83141893-83141912 MsG0780040834.01.T01:intron 20.0%
!! TATAAAAAAAAGCAATTGAC+TGG - Chr7:83140087-83140106 None:intergenic 20.0%
!! TCAGTAGCATTTAATAAATT+AGG - Chr7:83144045-83144064 None:intergenic 20.0%
!! TTAACCCACTATTAAAAAAT+AGG + Chr7:83139983-83140002 MsG0780040834.01.T01:intron 20.0%
!! TTGAAATTTCTTGTCATTAT+TGG + Chr7:83143162-83143181 MsG0780040834.01.T01:intron 20.0%
!!! AAGATTTTAATGAAAGAAGA+TGG + Chr7:83140855-83140874 MsG0780040834.01.T01:intron 20.0%
!!! ACTTTCCTATTTTTTAATAG+TGG - Chr7:83139991-83140010 None:intergenic 20.0%
!!! CTTTCCTATTTTTTAATAGT+GGG - Chr7:83139990-83140009 None:intergenic 20.0%
! AAATATGATCCAAGGATATA+TGG - Chr7:83142849-83142868 None:intergenic 25.0%
! AAATGTGGTTGCAAAATTAT+GGG + Chr7:83140572-83140591 MsG0780040834.01.T01:intron 25.0%
! AACAATTTCTTTGGATTTCT+TGG - Chr7:83140535-83140554 None:intergenic 25.0%
! AAGGAATAAGAAATCAATCA+GGG + Chr7:83141939-83141958 MsG0780040834.01.T01:intron 25.0%
! AATACCTGATGAATATCATA+GGG + Chr7:83142712-83142731 MsG0780040834.01.T01:intron 25.0%
! AGATGGTTGACAATATATTA+AGG + Chr7:83141134-83141153 MsG0780040834.01.T01:intron 25.0%
! ATAATGCAGTGAGATTAATA+TGG - Chr7:83140178-83140197 None:intergenic 25.0%
! ATATTAGAGTTTCTTCACAT+CGG - Chr7:83141655-83141674 None:intergenic 25.0%
! ATTAAAACTACAAGGCAAAT+AGG - Chr7:83139942-83139961 None:intergenic 25.0%
! CTTGTCTGTAATAATAATTG+TGG + Chr7:83140115-83140134 MsG0780040834.01.T01:intron 25.0%
! GAAAAATACTGAAGAATACA+CGG - Chr7:83141328-83141347 None:intergenic 25.0%
! GAAATCCAAAATATGTTGTT+CGG + Chr7:83142387-83142406 MsG0780040834.01.T01:intron 25.0%
! GTGTTAAGTGTTAATGAAAT+TGG + Chr7:83142610-83142629 MsG0780040834.01.T01:intron 25.0%
! TGTATTCGATTATTAACACA+TGG + Chr7:83144009-83144028 MsG0780040834.01.T01:three_prime_UTR 25.0%
! TTTGTTACAAATATGATCCA+AGG - Chr7:83142857-83142876 None:intergenic 25.0%
!! GTAAGCAAAACTATTTTCTT+GGG + Chr7:83142655-83142674 MsG0780040834.01.T01:CDS 25.0%
!! TAAGCAAAACTATTTTCTTG+GGG + Chr7:83142656-83142675 MsG0780040834.01.T01:CDS 25.0%
!! TATTCTTCAGTATTTTTCCA+CGG + Chr7:83141330-83141349 MsG0780040834.01.T01:intron 25.0%
!! TGTAAGCAAAACTATTTTCT+TGG + Chr7:83142654-83142673 MsG0780040834.01.T01:CDS 25.0%
!!! ATTTGGTGTTTTCTTTTGTT+GGG + Chr7:83139802-83139821 MsG0780040834.01.T01:intron 25.0%
!!! TATTTGGTGTTTTCTTTTGT+TGG + Chr7:83139801-83139820 MsG0780040834.01.T01:intron 25.0%
AAATATGTTGTTCGGTTGTA+TGG + Chr7:83142395-83142414 MsG0780040834.01.T01:intron 30.0%
AACTCTATATTTCCCTAGTT+TGG + Chr7:83139907-83139926 MsG0780040834.01.T01:intron 30.0%
AACTTAATGCCATATATCCT+TGG + Chr7:83142837-83142856 MsG0780040834.01.T01:intron 30.0%
AAGAACATGCTAAAATAGCA+AGG - Chr7:83143140-83143159 None:intergenic 30.0%
ACGATCTGTAATAAAGTTAC+TGG + Chr7:83141036-83141055 MsG0780040834.01.T01:intron 30.0%
ACTTTATATGTACTCGAAGT+TGG + Chr7:83142878-83142897 MsG0780040834.01.T01:intron 30.0%
ACTTTATTACAGATCGTTGT+TGG - Chr7:83141033-83141052 None:intergenic 30.0%
ATATTGTCAACCATCTTTGA+AGG - Chr7:83141130-83141149 None:intergenic 30.0%
ATGCTTGGAAACAATTTCTT+TGG - Chr7:83140544-83140563 None:intergenic 30.0%
CAAATGTGGTTGCAAAATTA+TGG + Chr7:83140571-83140590 MsG0780040834.01.T01:intron 30.0%
CAAGGAATAAGAAATCAATC+AGG + Chr7:83141938-83141957 MsG0780040834.01.T01:intron 30.0%
GAAAACACCAAATACGAATT+TGG - Chr7:83139795-83139814 None:intergenic 30.0%
GAATACCTGATGAATATCAT+AGG + Chr7:83142711-83142730 MsG0780040834.01.T01:intron 30.0%
GGATTAGAAAGTTCCTTAAT+GGG + Chr7:83143622-83143641 MsG0780040834.01.T01:three_prime_UTR 30.0%
GGGAACTAATTGAAATATTG+AGG + Chr7:83142332-83142351 MsG0780040834.01.T01:intron 30.0%
GTTAATGAAATTGGATGACA+TGG + Chr7:83142619-83142638 MsG0780040834.01.T01:intron 30.0%
TAAAGTCAGCTAACACAAAA+TGG - Chr7:83140052-83140071 None:intergenic 30.0%
TCAGTCCTATTATTTATCAC+CGG - Chr7:83142738-83142757 None:intergenic 30.0%
TCGAATGTTATCTATTCTGT+AGG + Chr7:83143194-83143213 MsG0780040834.01.T01:intron 30.0%
TGAAGCTTGTAATAATGATG+CGG + Chr7:83141832-83141851 MsG0780040834.01.T01:intron 30.0%
TTATCTATTCTGTAGGATCA+CGG + Chr7:83143201-83143220 MsG0780040834.01.T01:intron 30.0%
TTCAACTCTTTGTGAATCAT+CGG + Chr7:83142104-83142123 MsG0780040834.01.T01:intron 30.0%
TTGACAATATATTAAGGACG+TGG + Chr7:83141140-83141159 MsG0780040834.01.T01:intron 30.0%
TTGCAAGTTTCTTATTCTCA+AGG + Chr7:83141920-83141939 MsG0780040834.01.T01:intron 30.0%
TTTGATTGTATCCCATATGA+AGG + Chr7:83143708-83143727 MsG0780040834.01.T01:three_prime_UTR 30.0%
TTTGCAACCAAATTCGTATT+TGG + Chr7:83139785-83139804 MsG0780040834.01.T01:intron 30.0%
TTTGCATTTACAACAGTAGA+AGG - Chr7:83139668-83139687 None:intergenic 30.0%
! AAACCAATGAAGGCTTTAAT+TGG - Chr7:83143328-83143347 None:intergenic 30.0%
! AACTATTTTCTTGGGGATTT+TGG + Chr7:83142663-83142682 MsG0780040834.01.T01:CDS 30.0%
! AACTCTAATATCTGAGTTGA+AGG + Chr7:83141664-83141683 MsG0780040834.01.T01:intron 30.0%
! AATGAAGGCTTTAATTGGTA+CGG - Chr7:83143323-83143342 None:intergenic 30.0%
! ATTCTTCAGTATTTTTCCAC+GGG + Chr7:83141331-83141350 MsG0780040834.01.T01:intron 30.0%
! CATAATTTTGCAACCACATT+TGG - Chr7:83140573-83140592 None:intergenic 30.0%
! CATCTTTGAAGGTTTAAGAA+CGG - Chr7:83141119-83141138 None:intergenic 30.0%
! GGGATTTGAAATGGATATTT+GGG + Chr7:83143846-83143865 MsG0780040834.01.T01:three_prime_UTR 30.0%
! TACAACCGAACAACATATTT+TGG - Chr7:83142395-83142414 None:intergenic 30.0%
! TGGGATTTGAAATGGATATT+TGG + Chr7:83143845-83143864 MsG0780040834.01.T01:three_prime_UTR 30.0%
!! ATAATAGGACTGACTTTTCT+CGG + Chr7:83142745-83142764 MsG0780040834.01.T01:intron 30.0%
!! TTTATGAGTTAACTTGCCAA+TGG - Chr7:83142230-83142249 None:intergenic 30.0%
!!! ATAATTGTGGTTTTGTCTGT+TGG + Chr7:83140128-83140147 MsG0780040834.01.T01:intron 30.0%
AAAGGAGTTTGATGAAACCT+TGG + Chr7:83140995-83141014 MsG0780040834.01.T01:CDS 35.0%
AATACACGGTTTCATCTCTT+TGG - Chr7:83141314-83141333 None:intergenic 35.0%
AATGAAATTGGATGACATGG+TGG + Chr7:83142622-83142641 MsG0780040834.01.T01:intron 35.0%
ACATGCTAAAATAGCAAGGT+CGG - Chr7:83143136-83143155 None:intergenic 35.0%
AGATCATGAGTGTAATGCTT+GGG + Chr7:83141386-83141405 MsG0780040834.01.T01:intron 35.0%
AGATGTCAACTCCTTCATAT+GGG - Chr7:83143722-83143741 None:intergenic 35.0%
AGGTTCATTGTCATTGAGAT+TGG - Chr7:83143506-83143525 None:intergenic 35.0%
AGTTCTGTCTTGAACAAACA+AGG + Chr7:83142140-83142159 MsG0780040834.01.T01:intron 35.0%
ATCTGCAAAGCCCATAAAAA+TGG - Chr7:83140445-83140464 None:intergenic 35.0%
ATGCTGAGAACAATCTCTAA+GGG - Chr7:83140648-83140667 None:intergenic 35.0%
ATGGTACACTATAGAGATAG+TGG + Chr7:83139847-83139866 MsG0780040834.01.T01:intron 35.0%
ATTGACAAATCACCACCTAT+AGG + Chr7:83143245-83143264 MsG0780040834.01.T01:CDS 35.0%
CGTTCTTAAACCTTCAAAGA+TGG + Chr7:83141117-83141136 MsG0780040834.01.T01:intron 35.0%
CTCTTATACGCCAAAATTCA+TGG + Chr7:83140932-83140951 MsG0780040834.01.T01:CDS 35.0%
CTGCAAGAAACAGATTCATT+CGG - Chr7:83141708-83141727 None:intergenic 35.0%
CTTCCACTGTCTATGAAAAT+GGG + Chr7:83141801-83141820 MsG0780040834.01.T01:intron 35.0%
GAAATTGCTAGAAGAACTTG+TGG + Chr7:83143885-83143904 MsG0780040834.01.T01:three_prime_UTR 35.0%
GATACAATCAAACCACCAAT+AGG - Chr7:83143700-83143719 None:intergenic 35.0%
GGCAAAAGGGAAAGAAAAAT+GGG + Chr7:83142312-83142331 MsG0780040834.01.T01:intron 35.0%
GTACCAATTAAAGCCTTCAT+TGG + Chr7:83143322-83143341 MsG0780040834.01.T01:CDS 35.0%
GTTGAATTGAATCCTTGATG+TGG + Chr7:83143945-83143964 MsG0780040834.01.T01:three_prime_UTR 35.0%
TACAACAGTGCAAGTTTCAA+GGG - Chr7:83142551-83142570 None:intergenic 35.0%
TAGATGTCAACTCCTTCATA+TGG - Chr7:83143723-83143742 None:intergenic 35.0%
TATCTATTCTGTAGGATCAC+GGG + Chr7:83143202-83143221 MsG0780040834.01.T01:intron 35.0%
TATGCTGAGAACAATCTCTA+AGG - Chr7:83140649-83140668 None:intergenic 35.0%
TCGACAACAAGAAATCAAAG+AGG - Chr7:83142801-83142820 None:intergenic 35.0%
TCGTATACGCCAAAAATTCA+TGG + Chr7:83140880-83140899 MsG0780040834.01.T01:intron 35.0%
TCTGCAAAGCCCATAAAAAT+GGG - Chr7:83140444-83140463 None:intergenic 35.0%
TCTTCCACTGTCTATGAAAA+TGG + Chr7:83141800-83141819 MsG0780040834.01.T01:intron 35.0%
TCTTTCAGAAAGTCGTTTCT+TGG - Chr7:83141553-83141572 None:intergenic 35.0%
TGAAATGGATATTTGGGTGA+AGG + Chr7:83143852-83143871 MsG0780040834.01.T01:three_prime_UTR 35.0%
TGAGCTTATGGGATTTGAAA+TGG + Chr7:83143837-83143856 MsG0780040834.01.T01:three_prime_UTR 35.0%
TGCTTGGGAATTTAGTGATT+TGG + Chr7:83141401-83141420 MsG0780040834.01.T01:intron 35.0%
TTGCAAGAACAAAGACATAG+CGG + Chr7:83141596-83141615 MsG0780040834.01.T01:intron 35.0%
TTGTTTGTTCAAGACAGAAC+TGG - Chr7:83142141-83142160 None:intergenic 35.0%
! AACGAGATGATAGTGTCATA+TGG + Chr7:83140356-83140375 MsG0780040834.01.T01:intron 35.0%
! AAGAAACGACTTTCTGAAAG+AGG + Chr7:83141552-83141571 MsG0780040834.01.T01:intron 35.0%
! AATTTTGCAACCACATTTGG+TGG - Chr7:83140570-83140589 None:intergenic 35.0%
! ACTGTCATTTATCTGTGTCT+AGG + Chr7:83142421-83142440 MsG0780040834.01.T01:intron 35.0%
! ACTGTGCAAATTTTCTCCAT+TGG + Chr7:83142211-83142230 MsG0780040834.01.T01:intron 35.0%
! ATGTTTCTGCAACAGTTGAT+TGG - Chr7:83142000-83142019 None:intergenic 35.0%
! CATCTAGAATAAAACGAGTC+AGG - Chr7:83143436-83143455 None:intergenic 35.0%
! CGGATTAGAAAGTTCCTTAA+TGG + Chr7:83143621-83143640 MsG0780040834.01.T01:three_prime_UTR 35.0%
! GATAGTGGTTATTTGCTTGT+AGG + Chr7:83139862-83139881 MsG0780040834.01.T01:intron 35.0%
! GCATTTTCATCTTCAAATGG+AGG - Chr7:83143039-83143058 None:intergenic 35.0%
! GCTGCATTTTCATCTTCAAA+TGG - Chr7:83143042-83143061 None:intergenic 35.0%
! GCTTTGCTTCCATGAATTTT+TGG - Chr7:83140892-83140911 None:intergenic 35.0%
! TAGGAAAGTGAGTTGAGTTA+TGG + Chr7:83140002-83140021 MsG0780040834.01.T01:intron 35.0%
! TCTAAAACTGAGATTGGACT+CGG - Chr7:83143015-83143034 None:intergenic 35.0%
! TGTTTCTGCAACAGTTGATT+GGG - Chr7:83141999-83142018 None:intergenic 35.0%
! TTGTATGTGTTGTTGCTTCA+TGG + Chr7:83142578-83142597 MsG0780040834.01.T01:intron 35.0%
! TTTGAGACATGTCATTCCTA+AGG - Chr7:83142051-83142070 None:intergenic 35.0%
!! AAGTTGGTAAGTAAATGGAC+TGG + Chr7:83142894-83142913 MsG0780040834.01.T01:intron 35.0%
!! ACTCGAAGTTGGTAAGTAAA+TGG + Chr7:83142889-83142908 MsG0780040834.01.T01:intron 35.0%
!! CTGACTCGTTTTATTCTAGA+TGG + Chr7:83143434-83143453 MsG0780040834.01.T01:CDS 35.0%
!! TATTTTTCCACGGGCTATAT+TGG + Chr7:83141340-83141359 MsG0780040834.01.T01:intron 35.0%
!! TTCTTTTGTTGGGTTGTAGT+AGG + Chr7:83139812-83139831 MsG0780040834.01.T01:intron 35.0%
!! TTTTGTCGATTGAGTTTGCT+GGG + Chr7:83140313-83140332 MsG0780040834.01.T01:intron 35.0%
!! TTTTTGTCGATTGAGTTTGC+TGG + Chr7:83140312-83140331 MsG0780040834.01.T01:intron 35.0%
!!! GAGAACATAGTTTTTAGCTG+TGG + Chr7:83140615-83140634 MsG0780040834.01.T01:intron 35.0%
!!! TAGTAGGTTTTTTGGGGTTA+TGG + Chr7:83139828-83139847 MsG0780040834.01.T01:intron 35.0%
!!! TGGGTTGTAGTAGGTTTTTT+GGG + Chr7:83139821-83139840 MsG0780040834.01.T01:intron 35.0%
!!! TTGGGTTGTAGTAGGTTTTT+TGG + Chr7:83139820-83139839 MsG0780040834.01.T01:intron 35.0%
AACAAGTACAGCAAAGCACA+TGG - Chr7:83140406-83140425 None:intergenic 40.0%
AACACCCATCAAGATGCTTA+TGG + Chr7:83140508-83140527 MsG0780040834.01.T01:intron 40.0%
AATGAAGAAATACGCGCAGA+TGG + Chr7:83141738-83141757 MsG0780040834.01.T01:intron 40.0%
ACAAGAATCATCCCATGAGA+GGG - Chr7:83143285-83143304 None:intergenic 40.0%
ACCATCTCCAAGACATTCTT+GGG + Chr7:83141434-83141453 MsG0780040834.01.T01:intron 40.0%
AGAAGTCATCAGATGTTTCG+AGG + Chr7:83140225-83140244 MsG0780040834.01.T01:CDS 40.0%
AGGACTTCAGGTGAGTTTAT+TGG - Chr7:83142031-83142050 None:intergenic 40.0%
ATCACCTCAAAATCTGCAAG+GGG + Chr7:83141178-83141197 MsG0780040834.01.T01:intron 40.0%
ATCATTCAATCATTGGCAGC+TGG + Chr7:83140688-83140707 MsG0780040834.01.T01:intron 40.0%
ATGAAGGAGTTGACATCTAG+TGG + Chr7:83143724-83143743 MsG0780040834.01.T01:three_prime_UTR 40.0%
ATGGATTTCCAGTGAAAACC+AGG + Chr7:83142984-83143003 MsG0780040834.01.T01:CDS 40.0%
ATGTCATTCCTAAGGACTTC+AGG - Chr7:83142043-83142062 None:intergenic 40.0%
ATTGCTAGAAGAACTTGTGG+AGG + Chr7:83143888-83143907 MsG0780040834.01.T01:three_prime_UTR 40.0%
ATTTGGGTGAAGGAAGTAGA+GGG + Chr7:83143862-83143881 MsG0780040834.01.T01:three_prime_UTR 40.0%
CAAACAAGGCGTAATATCTC+TGG + Chr7:83142154-83142173 MsG0780040834.01.T01:intron 40.0%
CAATCAAACCACCAATAGGA+AGG - Chr7:83143696-83143715 None:intergenic 40.0%
CAATGTAAGAGACAAGACAC+CGG + Chr7:83140814-83140833 MsG0780040834.01.T01:intron 40.0%
CAGAAATTACTATCAGCTGC+TGG + Chr7:83143392-83143411 MsG0780040834.01.T01:CDS 40.0%
CAGATCATGAGTGTAATGCT+TGG + Chr7:83141385-83141404 MsG0780040834.01.T01:intron 40.0%
CATAGACAGTGGAAGAAAGA+GGG - Chr7:83141796-83141815 None:intergenic 40.0%
CATCACCTCAAAATCTGCAA+GGG + Chr7:83141177-83141196 MsG0780040834.01.T01:intron 40.0%
CATGCTAAAATAGCAAGGTC+GGG - Chr7:83143135-83143154 None:intergenic 40.0%
CTACAACAGTGCAAGTTTCA+AGG - Chr7:83142552-83142571 None:intergenic 40.0%
CTGCAAGGGGAAATTTAAAG+TGG + Chr7:83141191-83141210 MsG0780040834.01.T01:intron 40.0%
CTGCGACATCATTCAATCAT+TGG + Chr7:83140681-83140700 MsG0780040834.01.T01:intron 40.0%
GACATGTCTCAAAGCTTCAA+CGG + Chr7:83142058-83142077 MsG0780040834.01.T01:intron 40.0%
GAGTAATCCTCTCCAACTTA+CGG - Chr7:83140289-83140308 None:intergenic 40.0%
GATAGAAGATAGCCGTAAGT+TGG + Chr7:83140274-83140293 MsG0780040834.01.T01:intron 40.0%
GCATTCTCTTGAAAGTCCAT+TGG + Chr7:83143456-83143475 MsG0780040834.01.T01:CDS 40.0%
GGAAATTCTATCATGACCTG+AGG + Chr7:83141212-83141231 MsG0780040834.01.T01:intron 40.0%
GGAAGATAGGTTTATGGACA+AGG + Chr7:83140709-83140728 MsG0780040834.01.T01:intron 40.0%
GGGCAAAAGGGAAAGAAAAA+TGG + Chr7:83142311-83142330 MsG0780040834.01.T01:intron 40.0%
GTATAAGAGCCATCTTCTGT+AGG - Chr7:83140921-83140940 None:intergenic 40.0%
GTTCGAGCTATTGATCCTAT+AGG - Chr7:83143263-83143282 None:intergenic 40.0%
GTTGAGCAACTAAGAAAAGG+TGG - Chr7:83142267-83142286 None:intergenic 40.0%
GTTGGAGCTTAAAACTTCCA+AGG - Chr7:83141015-83141034 None:intergenic 40.0%
TAAAAACTATGTTCTCCCCG+TGG - Chr7:83140611-83140630 None:intergenic 40.0%
TAAACTCACCTGAAGTCCTT+AGG + Chr7:83142032-83142051 MsG0780040834.01.T01:intron 40.0%
TAGGGCCGGTGATAAATAAT+AGG + Chr7:83142730-83142749 MsG0780040834.01.T01:intron 40.0%
TATTTGGGTGAAGGAAGTAG+AGG + Chr7:83143861-83143880 MsG0780040834.01.T01:three_prime_UTR 40.0%
TCATAGACAGTGGAAGAAAG+AGG - Chr7:83141797-83141816 None:intergenic 40.0%
TCATCACCTCAAAATCTGCA+AGG + Chr7:83141176-83141195 MsG0780040834.01.T01:intron 40.0%
TCCATTGGATCCAACATTGA+GGG + Chr7:83143471-83143490 MsG0780040834.01.T01:CDS 40.0%
TCTATCCGATCACCAAATGA+AGG - Chr7:83140260-83140279 None:intergenic 40.0%
TGAGAGGTTACGTCAATCAA+AGG + Chr7:83140977-83140996 MsG0780040834.01.T01:CDS 40.0%
TGGTCCATAAGCATCTTGAT+GGG - Chr7:83140515-83140534 None:intergenic 40.0%
TTGCTAGAAGAACTTGTGGA+GGG + Chr7:83143889-83143908 MsG0780040834.01.T01:three_prime_UTR 40.0%
TTGGTCCATAAGCATCTTGA+TGG - Chr7:83140516-83140535 None:intergenic 40.0%
! AAACCTTTTCCTGGATGTCT+GGG + Chr7:83139616-83139635 MsG0780040834.01.T01:CDS 40.0%
! AGAAAGCACAAACTTACGTC+TGG - Chr7:83142506-83142525 None:intergenic 40.0%
! AGGAAAGTGCAACCAAACTA+GGG - Chr7:83139922-83139941 None:intergenic 40.0%
! ATTTCCCCTTGCAGATTTTG+AGG - Chr7:83141185-83141204 None:intergenic 40.0%
! CAAGTCCTTCATTTGGTGAT+CGG + Chr7:83140252-83140271 MsG0780040834.01.T01:CDS 40.0%
! CGCTTTGCTTCCATGAATTT+TGG - Chr7:83140893-83140912 None:intergenic 40.0%
! TAGAAAGTTCCTTAATGGGC+AGG + Chr7:83143626-83143645 MsG0780040834.01.T01:three_prime_UTR 40.0%
! TAGGAAAGTGCAACCAAACT+AGG - Chr7:83139923-83139942 None:intergenic 40.0%
! TGGTTTTCACTGGAAATCCA+TGG - Chr7:83142985-83143004 None:intergenic 40.0%
! TTTGACCTGGGAAGGTTTTT+AGG - Chr7:83141768-83141787 None:intergenic 40.0%
!! AAAGCCTTCATTGGTTTCCT+TGG + Chr7:83143331-83143350 MsG0780040834.01.T01:CDS 40.0%
!! GGAGGTTCTAAAACTGAGAT+TGG - Chr7:83143021-83143040 None:intergenic 40.0%
!! TTGGGGATTTTGGTATGTGT+CGG + Chr7:83142673-83142692 MsG0780040834.01.T01:intron 40.0%
!!! ATTTTGAGGTGATGATACCG+TGG - Chr7:83141171-83141190 None:intergenic 40.0%
!!! GGGTTGTAGTAGGTTTTTTG+GGG + Chr7:83139822-83139841 MsG0780040834.01.T01:intron 40.0%
AAAGAGGGACAGATTTGACC+TGG - Chr7:83141781-83141800 None:intergenic 45.0%
AAATGCAGCTCATGAGTCCT+TGG + Chr7:83143053-83143072 MsG0780040834.01.T01:CDS 45.0%
AAATTGGATGACATGGTGGC+AGG + Chr7:83142626-83142645 MsG0780040834.01.T01:intron 45.0%
AAGAGGGACAGATTTGACCT+GGG - Chr7:83141780-83141799 None:intergenic 45.0%
AATAGCTCGAACCCTCTCAT+GGG + Chr7:83143271-83143290 MsG0780040834.01.T01:CDS 45.0%
AATTGACCATGTCAAAGCCC+AGG + Chr7:83142956-83142975 MsG0780040834.01.T01:CDS 45.0%
ACAAGGCGTAATATCTCTGG+AGG + Chr7:83142157-83142176 MsG0780040834.01.T01:intron 45.0%
ACCACTCTTCATACAGTCCA+AGG - Chr7:83143073-83143092 None:intergenic 45.0%
AGAAAAGAGGTCGTGGGTAA+AGG + Chr7:83143808-83143827 MsG0780040834.01.T01:three_prime_UTR 45.0%
AGAGATGACCATGATGATCG+CGG - Chr7:83139715-83139734 None:intergenic 45.0%
AGCACAAACTTACGTCTGGA+TGG - Chr7:83142502-83142521 None:intergenic 45.0%
AGCGTATGTCCTACAGAAGA+TGG + Chr7:83140909-83140928 MsG0780040834.01.T01:intron 45.0%
AGGACTGCAAGTCCTTCATT+TGG + Chr7:83140245-83140264 MsG0780040834.01.T01:CDS 45.0%
AGTTGACATCTAGTGGCATG+AGG + Chr7:83143731-83143750 MsG0780040834.01.T01:three_prime_UTR 45.0%
ATCATTGGCAGCTGGAAGAT+AGG + Chr7:83140696-83140715 MsG0780040834.01.T01:intron 45.0%
ATGGGATGATTCTTGTGCAG+AGG + Chr7:83143289-83143308 MsG0780040834.01.T01:CDS 45.0%
ATGTCTCAAAGCTTCAACGG+TGG + Chr7:83142061-83142080 MsG0780040834.01.T01:intron 45.0%
ATTGACCATGTCAAAGCCCA+GGG + Chr7:83142957-83142976 MsG0780040834.01.T01:CDS 45.0%
CAAAGCAGTAAGCCACATCA+AGG - Chr7:83143960-83143979 None:intergenic 45.0%
CAAGCATAGTCCACCAAATG+TGG + Chr7:83140557-83140576 MsG0780040834.01.T01:intron 45.0%
CACAAGAATCATCCCATGAG+AGG - Chr7:83143286-83143305 None:intergenic 45.0%
CACCATCTCCAAGACATTCT+TGG + Chr7:83141433-83141452 MsG0780040834.01.T01:intron 45.0%
CAGTAGATCTCATCATCCTC+AGG - Chr7:83141231-83141250 None:intergenic 45.0%
CCATCTCCAAGACATTCTTG+GGG + Chr7:83141435-83141454 MsG0780040834.01.T01:intron 45.0%
CCTGATGAATATCATAGGGC+CGG + Chr7:83142716-83142735 MsG0780040834.01.T01:intron 45.0%
CGAAATCCCCAAGAATGTCT+TGG - Chr7:83141444-83141463 None:intergenic 45.0%
CGAGCTATTGATCCTATAGG+TGG - Chr7:83143260-83143279 None:intergenic 45.0%
CTACTGGAATCGAGGAAAAG+TGG + Chr7:83141245-83141264 MsG0780040834.01.T01:intron 45.0%
CTGAGGATGATGAGATCTAC+TGG + Chr7:83141229-83141248 MsG0780040834.01.T01:intron 45.0%
GAAAAGAGGTCGTGGGTAAA+GGG + Chr7:83143809-83143828 MsG0780040834.01.T01:three_prime_UTR 45.0%
GATGAGATCTACTGGAATCG+AGG + Chr7:83141237-83141256 MsG0780040834.01.T01:intron 45.0%
GCAGCTGGAAGATAGGTTTA+TGG + Chr7:83140703-83140722 MsG0780040834.01.T01:intron 45.0%
GCGTATTTGTCCCTCAATGT+TGG - Chr7:83143484-83143503 None:intergenic 45.0%
GGAGACTGTTGTCAGAAAAG+AGG + Chr7:83143795-83143814 MsG0780040834.01.T01:three_prime_UTR 45.0%
GGGGTTGAGCAACTAAGAAA+AGG - Chr7:83142270-83142289 None:intergenic 45.0%
GTAAGCAACTGTTCTCTGCT+CGG - Chr7:83140755-83140774 None:intergenic 45.0%
GTCCATTGGATCCAACATTG+AGG + Chr7:83143470-83143489 MsG0780040834.01.T01:CDS 45.0%
GTGTCCAAGGAAACCAATGA+AGG - Chr7:83143338-83143357 None:intergenic 45.0%
GTTCTCCTAAAAACCTTCCC+AGG + Chr7:83141760-83141779 MsG0780040834.01.T01:intron 45.0%
GTTGTCAGAAAAGAGGTCGT+GGG + Chr7:83143802-83143821 MsG0780040834.01.T01:three_prime_UTR 45.0%
TACTGATGACTCAGGAGAAC+AGG - Chr7:83141520-83141539 None:intergenic 45.0%
TAGTGGCATGAGGTCTGTTT+GGG + Chr7:83143741-83143760 MsG0780040834.01.T01:three_prime_UTR 45.0%
TCCCTCAATGTTGGATCCAA+TGG - Chr7:83143475-83143494 None:intergenic 45.0%
TCCTTGGACTGTATGAAGAG+TGG + Chr7:83143069-83143088 MsG0780040834.01.T01:CDS 45.0%
TCTCTGCATACTGATGACTC+AGG - Chr7:83141528-83141547 None:intergenic 45.0%
TGAGTCATCAGTATGCAGAG+AGG + Chr7:83141527-83141546 MsG0780040834.01.T01:intron 45.0%
TGCTAGAAGAACTTGTGGAG+GGG + Chr7:83143890-83143909 MsG0780040834.01.T01:three_prime_UTR 45.0%
TGTATGAAGAGTGGTCAGCT+TGG + Chr7:83143078-83143097 MsG0780040834.01.T01:CDS 45.0%
TGTTGTCAGAAAAGAGGTCG+TGG + Chr7:83143801-83143820 MsG0780040834.01.T01:three_prime_UTR 45.0%
TTAAGGACGTGGTTTCTCCA+CGG + Chr7:83141151-83141170 MsG0780040834.01.T01:intron 45.0%
TTTGCTTCGTGTACAGGTTG+AGG - Chr7:83143526-83143545 None:intergenic 45.0%
TTTGGGTGAAGGAAGTAGAG+GGG + Chr7:83143863-83143882 MsG0780040834.01.T01:three_prime_UTR 45.0%
! AAACCCTTTTCGATGCCTCA+TGG - Chr7:83141578-83141597 None:intergenic 45.0%
! AAGATAGCCGTAAGTTGGAG+AGG + Chr7:83140279-83140298 MsG0780040834.01.T01:intron 45.0%
! ACTTTCTGAAAGAGGCCATG+AGG + Chr7:83141560-83141579 MsG0780040834.01.T01:intron 45.0%
! ATTGGTTTCCTTGGACACGA+AGG + Chr7:83143340-83143359 MsG0780040834.01.T01:CDS 45.0%
! CAAACCTTTTCCTGGATGTC+TGG + Chr7:83139615-83139634 MsG0780040834.01.T01:CDS 45.0%
! CTTTGACTTTGTCAGCTCCT+TGG - Chr7:83141872-83141891 None:intergenic 45.0%
! GAGCCCATTTTCATAGACAG+TGG - Chr7:83141807-83141826 None:intergenic 45.0%
! GGCTTTGACATGGTCAATTC+AGG - Chr7:83142955-83142974 None:intergenic 45.0%
!! AAAGGGTGGGTTGAGCTTAT+GGG + Chr7:83143826-83143845 MsG0780040834.01.T01:three_prime_UTR 45.0%
!! AGTGGTTGATTTGACAGGCA+GGG + Chr7:83143914-83143933 MsG0780040834.01.T01:three_prime_UTR 45.0%
!! CACATTTGGTGGACTATGCT+TGG - Chr7:83140559-83140578 None:intergenic 45.0%
!! TAAAGGGTGGGTTGAGCTTA+TGG + Chr7:83143825-83143844 MsG0780040834.01.T01:three_prime_UTR 45.0%
AACTATGTTCTCCCCGTGGA+AGG - Chr7:83140607-83140626 None:intergenic 50.0%
AAGAGCAAGCATTTCGCCCA+AGG - Chr7:83141632-83141651 None:intergenic 50.0%
ACGAAGCAAAGCGAAGACAG+AGG + Chr7:83143536-83143555 MsG0780040834.01.T01:three_prime_UTR 50.0%
ACGTCTGGATGGTGAAGAAG+TGG - Chr7:83142491-83142510 None:intergenic 50.0%
ACTATGTTCTCCCCGTGGAA+GGG - Chr7:83140606-83140625 None:intergenic 50.0%
ACTCCACAACCTGCCCATTA+AGG - Chr7:83143638-83143657 None:intergenic 50.0%
AGCGTCTGTCTACAGATGAG+AGG + Chr7:83140961-83140980 MsG0780040834.01.T01:CDS 50.0%
AGTGGCATGAGGTCTGTTTG+GGG + Chr7:83143742-83143761 MsG0780040834.01.T01:three_prime_UTR 50.0%
ATACGCTTTGTCTCAGCCAG+TGG - Chr7:83141094-83141113 None:intergenic 50.0%
ATCCTCTACCTTCGTGTCCA+AGG - Chr7:83143351-83143370 None:intergenic 50.0%
ATGATCGCGGTGCGGTTTAT+CGG - Chr7:83139702-83139721 None:intergenic 50.0%
CAATAGCTCGAACCCTCTCA+TGG + Chr7:83143270-83143289 MsG0780040834.01.T01:CDS 50.0%
CCCCAAGAATGTCTTGGAGA+TGG - Chr7:83141438-83141457 None:intergenic 50.0%
CCGGCCCTATGATATTCATC+AGG - Chr7:83142719-83142738 None:intergenic 50.0%
CTAGTGGCATGAGGTCTGTT+TGG + Chr7:83143740-83143759 MsG0780040834.01.T01:three_prime_UTR 50.0%
CTTCCCAGACATCCAGGAAA+AGG - Chr7:83139622-83139641 None:intergenic 50.0%
CTTCGCTTTGCTTCGTGTAC+AGG - Chr7:83143532-83143551 None:intergenic 50.0%
GGATGATTCTTGTGCAGAGG+TGG + Chr7:83143292-83143311 MsG0780040834.01.T01:CDS 50.0%
TACCATCTTCCCAGACATCC+AGG - Chr7:83139628-83139647 None:intergenic 50.0%
TAGCGGAGAAGCTCTACCTT+GGG + Chr7:83141613-83141632 MsG0780040834.01.T01:intron 50.0%
TCAACCCACTTTCGTCTCTC+CGG - Chr7:83140836-83140855 None:intergenic 50.0%
TGAACGACAGTCTACTCCAC+TGG + Chr7:83141075-83141094 MsG0780040834.01.T01:intron 50.0%
TTCCTGGATGTCTGGGAAGA+TGG + Chr7:83139623-83139642 MsG0780040834.01.T01:CDS 50.0%
TTCCTTGGACACGAAGGTAG+AGG + Chr7:83143346-83143365 MsG0780040834.01.T01:CDS 50.0%
TTTGACAGGCAGGGTCTGAA+TGG + Chr7:83143923-83143942 MsG0780040834.01.T01:three_prime_UTR 50.0%
! ATAGCGGAGAAGCTCTACCT+TGG + Chr7:83141612-83141631 MsG0780040834.01.T01:intron 50.0%
! GTTCCTTAATGGGCAGGTTG+TGG + Chr7:83143632-83143651 MsG0780040834.01.T01:three_prime_UTR 50.0%
! TAATGGGCAGGTTGTGGAGT+GGG + Chr7:83143638-83143657 MsG0780040834.01.T01:three_prime_UTR 50.0%
! TCAGAGGTGCACCTTCCTAT+TGG + Chr7:83143682-83143701 MsG0780040834.01.T01:three_prime_UTR 50.0%
! TTAATGGGCAGGTTGTGGAG+TGG + Chr7:83143637-83143656 MsG0780040834.01.T01:three_prime_UTR 50.0%
! TTCCCTTTTGCCCTATCGCA+GGG - Chr7:83142304-83142323 None:intergenic 50.0%
! TTTCCCTTTTGCCCTATCGC+AGG - Chr7:83142305-83142324 None:intergenic 50.0%
!! AGGCCATGAGGCATCGAAAA+GGG + Chr7:83141572-83141591 MsG0780040834.01.T01:intron 50.0%
!! CAGTGGTTGATTTGACAGGC+AGG + Chr7:83143913-83143932 MsG0780040834.01.T01:three_prime_UTR 50.0%
AAACCGCACCGCGATCATCA+TGG + Chr7:83139704-83139723 MsG0780040834.01.T01:CDS 55.0%
AAGAACTTGTGGAGGGGCAG+TGG + Chr7:83143896-83143915 MsG0780040834.01.T01:three_prime_UTR 55.0%
AAGAGGTCGTGGGTAAAGGG+TGG + Chr7:83143812-83143831 MsG0780040834.01.T01:three_prime_UTR 55.0%
AATGGGCAGGTTGTGGAGTG+GGG + Chr7:83143639-83143658 MsG0780040834.01.T01:three_prime_UTR 55.0%
ACTGGAAATCCATGGCACCC+TGG - Chr7:83142977-83142996 None:intergenic 55.0%
AGACACCGGAGAGACGAAAG+TGG + Chr7:83140828-83140847 MsG0780040834.01.T01:intron 55.0%
AGAGGTCGTGGGTAAAGGGT+GGG + Chr7:83143813-83143832 MsG0780040834.01.T01:three_prime_UTR 55.0%
AGATTGGACTCGGCTGATCC+TGG - Chr7:83143005-83143024 None:intergenic 55.0%
AGCAGATGCATGAAGACGCG+AGG + Chr7:83141283-83141302 MsG0780040834.01.T01:intron 55.0%
AGCTTCAACGGTGGCTTCTC+TGG + Chr7:83142070-83142089 MsG0780040834.01.T01:intron 55.0%
AGGTCTGTTTGGGGGGATTG+TGG + Chr7:83143751-83143770 MsG0780040834.01.T01:three_prime_UTR 55.0%
CAGAAGGCTCCAAGGATCAG+AGG + Chr7:83143666-83143685 MsG0780040834.01.T01:three_prime_UTR 55.0%
CGGTAAAGCACACGACTCCA+AGG + Chr7:83141852-83141871 MsG0780040834.01.T01:intron 55.0%
CTGATCCTTGGAGCCTTCTG+TGG - Chr7:83143666-83143685 None:intergenic 55.0%
CTGGAAATCCATGGCACCCT+GGG - Chr7:83142976-83142995 None:intergenic 55.0%
GACACCGGAGAGACGAAAGT+GGG + Chr7:83140829-83140848 MsG0780040834.01.T01:intron 55.0%
GAGGTGCACCTTCCTATTGG+TGG + Chr7:83143685-83143704 MsG0780040834.01.T01:three_prime_UTR 55.0%
GGGACAGATTTGACCTGGGA+AGG - Chr7:83141776-83141795 None:intergenic 55.0%
GGGGATTTCGTCAATCGCTG+TGG + Chr7:83141454-83141473 MsG0780040834.01.T01:intron 55.0%
GGTCTGTTTGGGGGGATTGT+GGG + Chr7:83143752-83143771 MsG0780040834.01.T01:three_prime_UTR 55.0%
GTCATCGCCAATATAGCCCG+TGG - Chr7:83141350-83141369 None:intergenic 55.0%
GTCTGTTTGGGGGGATTGTG+GGG + Chr7:83143753-83143772 MsG0780040834.01.T01:three_prime_UTR 55.0%
GTGGCATGAGGTCTGTTTGG+GGG + Chr7:83143743-83143762 MsG0780040834.01.T01:three_prime_UTR 55.0%
TATCGCAGGGGAAGAGAGGA+GGG - Chr7:83142291-83142310 None:intergenic 55.0%
TCCCCTGCGATAGGGCAAAA+GGG + Chr7:83142299-83142318 MsG0780040834.01.T01:intron 55.0%
TCCTCTCTTCCCCTGCGATA+GGG + Chr7:83142291-83142310 MsG0780040834.01.T01:intron 55.0%
TGACAACAGTCTCCACCACC+AGG - Chr7:83143789-83143808 None:intergenic 55.0%
TGACCATGATGATCGCGGTG+CGG - Chr7:83139710-83139729 None:intergenic 55.0%
TGGCATGAGGTCTGTTTGGG+GGG + Chr7:83143744-83143763 MsG0780040834.01.T01:three_prime_UTR 55.0%
TTCCCCTGCGATAGGGCAAA+AGG + Chr7:83142298-83142317 MsG0780040834.01.T01:intron 55.0%
! AGAACAGGAAGCGCGACTGA+AGG - Chr7:83141505-83141524 None:intergenic 55.0%
! GAAGGTGCACCTCTGATCCT+TGG - Chr7:83143678-83143697 None:intergenic 55.0%
! TCCCTTTTGCCCTATCGCAG+GGG - Chr7:83142303-83142322 None:intergenic 55.0%
!! CGGCTGATCCTGGTTTTCAC+TGG - Chr7:83142995-83143014 None:intergenic 55.0%
!! GAGGCCATGAGGCATCGAAA+AGG + Chr7:83141571-83141590 MsG0780040834.01.T01:intron 55.0%
!! GGGGCAGTGGTTGATTTGAC+AGG + Chr7:83143909-83143928 MsG0780040834.01.T01:three_prime_UTR 55.0%
ATCGCAGGGGAAGAGAGGAG+GGG - Chr7:83142290-83142309 None:intergenic 60.0%
ATGGGCAGGTTGTGGAGTGG+GGG + Chr7:83143640-83143659 MsG0780040834.01.T01:three_prime_UTR 60.0%
CTATCGCAGGGGAAGAGAGG+AGG - Chr7:83142292-83142311 None:intergenic 60.0%
CTCCTCTCTTCCCCTGCGAT+AGG + Chr7:83142290-83142309 MsG0780040834.01.T01:intron 60.0%
TGGGCCTTGAAGCCCTTCCA+CGG + Chr7:83140591-83140610 MsG0780040834.01.T01:intron 60.0%
TTGTGGGGACAGCAACAGCC+TGG + Chr7:83143768-83143787 MsG0780040834.01.T01:three_prime_UTR 60.0%
! TGGCACCCTGGGCTTTGACA+TGG - Chr7:83142965-83142984 None:intergenic 60.0%
! TGTCAAAGCCCAGGGTGCCA+TGG + Chr7:83142965-83142984 MsG0780040834.01.T01:CDS 60.0%
CTCCCCGTGGAAGGGCTTCA+AGG - Chr7:83140598-83140617 None:intergenic 65.0%
GCCCTATCGCAGGGGAAGAG+AGG - Chr7:83142295-83142314 None:intergenic 65.0%
GGACAGCAACAGCCTGGTGG+TGG + Chr7:83143774-83143793 MsG0780040834.01.T01:three_prime_UTR 65.0%
GGCCTTGAAGCCCTTCCACG+GGG + Chr7:83140593-83140612 MsG0780040834.01.T01:intron 65.0%
GGGCCTTGAAGCCCTTCCAC+GGG + Chr7:83140592-83140611 MsG0780040834.01.T01:intron 65.0%
TCGCAGGGGAAGAGAGGAGG+GGG - Chr7:83142289-83142308 None:intergenic 65.0%
TGGGGACAGCAACAGCCTGG+TGG + Chr7:83143771-83143790 MsG0780040834.01.T01:three_prime_UTR 65.0%
TGTGGAGTGGGGGCCACAGA+AGG + Chr7:83143650-83143669 MsG0780040834.01.T01:three_prime_UTR 65.0%
GGGGGCCACAGAAGGCTCCA+AGG + Chr7:83143658-83143677 MsG0780040834.01.T01:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 83139611 83144118 83139611 ID=MsG0780040834.01;Name=MsG0780040834.01
Chr7 mRNA 83139611 83144118 83139611 ID=MsG0780040834.01.T01;Parent=MsG0780040834.01;Name=MsG0780040834.01.T01;_AED=0.37;_eAED=0.44;_QI=0|0.2|0.16|1|0.4|0.33|6|628|283
Chr7 exon 83139611 83139774 83139611 ID=MsG0780040834.01.T01:exon:19650;Parent=MsG0780040834.01.T01
Chr7 exon 83140211 83140287 83140211 ID=MsG0780040834.01.T01:exon:19651;Parent=MsG0780040834.01.T01
Chr7 exon 83140925 83141042 83140925 ID=MsG0780040834.01.T01:exon:19652;Parent=MsG0780040834.01.T01
Chr7 exon 83142648 83142684 83142648 ID=MsG0780040834.01.T01:exon:19653;Parent=MsG0780040834.01.T01
Chr7 exon 83142919 83143099 83142919 ID=MsG0780040834.01.T01:exon:19654;Parent=MsG0780040834.01.T01
Chr7 exon 83143216 83144118 83143216 ID=MsG0780040834.01.T01:exon:19655;Parent=MsG0780040834.01.T01
Chr7 CDS 83139611 83139774 83139611 ID=MsG0780040834.01.T01:cds;Parent=MsG0780040834.01.T01
Chr7 CDS 83140211 83140287 83140211 ID=MsG0780040834.01.T01:cds;Parent=MsG0780040834.01.T01
Chr7 CDS 83140925 83141042 83140925 ID=MsG0780040834.01.T01:cds;Parent=MsG0780040834.01.T01
Chr7 CDS 83142648 83142684 83142648 ID=MsG0780040834.01.T01:cds;Parent=MsG0780040834.01.T01
Chr7 CDS 83142919 83143099 83142919 ID=MsG0780040834.01.T01:cds;Parent=MsG0780040834.01.T01
Chr7 CDS 83143216 83143490 83143216 ID=MsG0780040834.01.T01:cds;Parent=MsG0780040834.01.T01
Chr7 three_prime_UTR 83143491 83144118 83143491 ID=MsG0780040834.01.T01:three_prime_utr;Parent=MsG0780040834.01.T01
Gene Sequence

>MsG0780040834.01.T01

ATGACAAACCTTTTCCTGGATGTCTGGGAAGATGGTAATCTCTTTGATTTGACTCCTTCTACTGTTGTAAATGCAAACAAGCTTCTCACCGATAAACCGCACCGCGATCATCATGGTCATCTCTCTCTCTCTCGATTTACAGTTTTTTTTTTTTTTTACTATTACAGCATCACTTTCAAGAAGTCATCAGATGTTTCGAGGACTGCAAGTCCTTCATTTGGTGATCGGATAGAAGATAGCCAAGATGGCTCTTATACGCCAAAATTCATGGAAGCAAAGCGTCTGTCTACAGATGAGAGGTTACGTCAATCAAAGGAGTTTGATGAAACCTTGGAAGTTTTAAGCTCCAACAACGATCTGTTCTATGTAAGCAAAACTATTTTCTTGGGGATTTTGAAGTTTCTGAGACTGTTTTATTTGTTTTCACAGCCTGAATTGACCATGTCAAAGCCCAGGGTGCCATGGATTTCCAGTGAAAACCAGGATCAGCCGAGTCCAATCTCAGTTTTAGAACCTCCATTTGAAGATGAAAATGCAGCTCATGAGTCCTTGGACTGTATGAAGAGTGGTCAGCTTGGATCACGGGTGTCTCTGAAGTCTAATTTAATTGACAAATCACCACCTATAGGATCAATAGCTCGAACCCTCTCATGGGATGATTCTTGTGCAGAGGTGGCAAGTCCGTACCAATTAAAGCCTTCATTGGTTTCCTTGGACACGAAGGTAGAGGATCAAGACTTGCTTGTCTTCGTTCAGAAATTACTATCAGCTGCTGGACTTGATGATCAGTGCAGCCTGACTCGTTTTATTCTAGATGGCATTCTCTTGAAAGTCCATTGGATCCAACATTGA
Protein sequence

>MsG0780040834.01.T01

MTNLFLDVWEDGNLFDLTPSTVVNANKLLTDKPHRDHHGHLSLSRFTVFFFFYYYSITFKKSSDVSRTASPSFGDRIEDSQDGSYTPKFMEAKRLSTDERLRQSKEFDETLEVLSSNNDLFYVSKTIFLGILKFLRLFYLFSQPELTMSKPRVPWISSENQDQPSPISVLEPPFEDENAAHESLDCMKSGQLGSRVSLKSNLIDKSPPIGSIARTLSWDDSCAEVASPYQLKPSLVSLDTKVEDQDLLVFVQKLLSAAGLDDQCSLTRFILDGILLKVHWIQH*