AlfalfaGEDB | MsG0180004062.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004062.01

KEGG: K11673
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004062.01.T01	XP_013468664.1	89.432	634	22	4	10	641	2	592	0	1154

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004062.01.T01	Q9LSW2	56.761	636	222	4	7	640	11	595	0	723

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004062.01.T01	A0A072VM47	89.432	634	22	4	10	641	2	592	0.0	1154

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048152.01	MsG0180004062.01	0.821506	3.893762e-53	3.173675e-50
MsG0080048784.01	MsG0180004062.01	0.817114	3.899743e-52	2.814862e-49
MsG0180000155.01	MsG0180004062.01	0.840075	1.081526e-57	1.523474e-54
MsG0180000355.01	MsG0180004062.01	0.815561	8.678265e-52	6.003530e-49
MsG0180000835.01	MsG0180004062.01	0.846223	2.485990e-59	4.248766e-56
MsG0180000836.01	MsG0180004062.01	0.830461	2.899382e-55	3.056411e-52
MsG0180002547.01	MsG0180004062.01	0.807430	5.073666e-50	2.825384e-47
MsG0180002664.01	MsG0180004062.01	0.801285	9.677620e-49	4.603933e-46
MsG0180002794.01	MsG0180004062.01	0.815197	1.045896e-51	7.162984e-49
MsG0180003493.01	MsG0180004062.01	0.852322	4.981728e-61	1.037171e-57

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004062.01.T01	MTR_1g073920	89.432	634	22	4	10	641	2	592	0.0	1154
MsG0180004062.01.T01	MTR_0045s0160	71.053	38	11	0	146	183	25	62	6.56e-11	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0180004062.01.T01	AT5G43500	56.761	636	222	4	7	640	11	595	723
MsG0180004062.01.T01	AT5G43500	57.030	633	219	4	10	640	2	583	721
MsG0180004062.01.T01	AT5G43500	55.268	541	189	4	7	545	11	500	587
MsG0180004062.01.T01	AT5G43500	55.576	538	186	4	10	545	2	488	586

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Find 16 sgRNAs with CRISPR-Local

Find 911 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAGAAGAAGAAAGGAGATT+AGG	0.440845	1:+72706386	None:intergenic
ATAATTAATGTTTGAAATCT+CGG	0.381772	1:-72706239	MsG0180004062.01.T01:exon
ATAGTTTAAAATATAAAAGG+GGG	0.571444	1:+72706277	None:intergenic
ATGACAAAAGAGACACGAAG+AGG	0.650480	1:+72706181	None:intergenic
ATGTCATGACTTCTTTAAGT+GGG	0.576763	1:-72706329	MsG0180004062.01.T01:exon
CAAAAGAGACACGAAGAGGA+AGG	0.551868	1:+72706185	None:intergenic
CATAGTTTAAAATATAAAAG+GGG	0.562604	1:+72706276	None:intergenic
CATGTCATGACTTCTTTAAG+TGG	0.483968	1:-72706330	MsG0180004062.01.T01:exon
GATGGAGAAAGAATCAACAA+AGG	0.655090	1:+72706417	None:intergenic
GGAGATTAGGACATAATCGA+TGG	0.592549	1:+72706399	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAACTGGGTTGTCAA+AGG	+	Chr1:72695011-72695030	None:intergenic	30.0%
AAAAACGAGATAACAGCTTT+AGG	+	Chr1:72704486-72704505	None:intergenic	30.0%
AAAAATATGATGCTCTTTGG+TGG	-	Chr1:72693871-72693890	MsG0180004062.01.T01:intron	30.0%
AAATATTCAAATGTCCTCTG+CGG	+	Chr1:72701218-72701237	None:intergenic	30.0%
AAATGAAGCAATTGATACAG+TGG	-	Chr1:72705823-72705842	MsG0180004062.01.T01:intron	30.0%
AAATTCAAAAACCTGATCTC+AGG	+	Chr1:72696375-72696394	None:intergenic	30.0%
AACATATCTGTTCGAATTTG+TGG	+	Chr1:72704201-72704220	None:intergenic	30.0%
AAGAAATCATATACCTTACG+AGG	+	Chr1:72696997-72697016	None:intergenic	30.0%
AAGAGAAGAGACAAATACAT+TGG	+	Chr1:72703014-72703033	None:intergenic	30.0%
AAGGGTCAATCAAATTACAA+AGG	+	Chr1:72697249-72697268	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	72693078	72706445	72693078	ID=MsG0180004062.01;
Chr1	mRNA	72693078	72706445	72693078	ID=MsG0180004062.01.T01;Parent=MsG0180004062.01
Chr1	exon	72693078	72693377	72693078	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72693234	72693377	72693234	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	CDS	72693498	72693548	72693498	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72693498	72693548	72693498	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72693676	72693721	72693676	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72693676	72693721	72693676	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72693837	72693886	72693837	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72693837	72693886	72693837	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72693974	72694017	72693974	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72693974	72694017	72693974	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72694099	72694298	72694099	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72694099	72694298	72694099	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72694394	72694464	72694394	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72694394	72694464	72694394	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72694557	72694646	72694557	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72694557	72694646	72694557	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72695242	72695373	72695242	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72695242	72695373	72695242	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72696705	72696755	72696705	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72696705	72696755	72696705	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72697247	72697336	72697247	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72697247	72697336	72697247	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72697451	72697515	72697451	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72697451	72697515	72697451	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72697643	72697763	72697643	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72697643	72697763	72697643	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72698263	72698468	72698263	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72698263	72698468	72698263	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72699492	72699611	72699492	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72699492	72699611	72699492	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72701782	72701852	72701782	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72701782	72701852	72701782	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72702273	72702300	72702273	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72702273	72702300	72702273	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72702373	72702382	72702373	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72702373	72702382	72702373	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72702521	72702586	72702521	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72702521	72702586	72702521	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72702673	72702732	72702673	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72702673	72702732	72702673	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72703319	72703428	72703319	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72703319	72703428	72703319	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72703560	72703632	72703560	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72703560	72703632	72703560	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	CDS	72704758	72704784	72704758	ID=MsG0180004062.01.T01.cds;Parent=MsG0180004062.01.T01
Chr1	exon	72704758	72704789	72704758	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01
Chr1	exon	72706172	72706445	72706172	ID=MsG0180004062.01.T01.exon;Parent=MsG0180004062.01.T01

Gene Sequence

>MsG0180004062.01.T01

ATGGCTTCTAAAGTTTCGACGTTCAGGGATTACCTTAAATCTGCGCTTCCTTCACAAGTTATGTCAGAACGTGGTTCCAATCTCGTTGTAATCAACCCAGGTTCTGCAAATATTAGGATTGGATTGGCTTCACAAGATACCCCTTATAATATCCCTCATTGCATTGCTCATTATACCAAACAAGTTCCTAAGAAGAATGTTCAAGATCAGATGCTCAATAGTCAAGTTACAACTGCACAGCATATGGAAAGGGAAAAGGCTTATGATGTTATTGCATCGCTGTTGAAGATACCGTTTCTGGATGAAGAACCTTCCAGCAACTCTTTCCCTCGTAAGGGTGACATTTACACATATCATTCGTGGAGGATGCCTTTGAAAGATTCACCCTTCACTTGGACTAATGTTTACGAGGAGGTCATTAGTTCGTCTTCAGTTTCAGCATTAGATGATGTAGTCTTGCTTGGTGAGTCGAGGGAGGAGTTAAACGGGAGGCTAGAGACTTGGAGGCAAGCCTTAGAAGCGTACGGTTTCCGCCTGAGTAGAAACAAGACGGAATATATGGAATATACTGCGAGTAAAGATGAGACTAGTGAGTCTTTGGACCCAAAAGAAGGTACAGATTTGAAGGAAATTGGTGCGAGCAATCAAAAGTTCAGAAAGTTCATTTGTGGCGAGGAAGCATTAAGAATATCCCCCACTGAACCGTATTGTTTATGTCGTCCAATCCGCAGAGGACATTTGAATATTTCACAACACTATCCCATGCAGCAGGTGTTTGAGGATCTACGTGCAATTTGGGACTGGATTTTAATAGAGAAACTGCATATTCCTCGCAATGAAAGAAACATGTACTCAGCTATTCTTGTGTTGCCAGAAACATTTGATAATCGTGAAATAAAGGAAATTCTATCTGTAGTACTGGAAGAACTCTGCTTTGGCTCAGCAGTGGTGCACCAGGAAGGACTTGCTGCGGTTTTTGGAAATGGATTATCAACAGCTTGTGTAGTGAATATTGGTGCTCAGGTGACATCAATTATATGCATAGAGGAGGGAGCTACTCTGCCTTCAACTGCAAAAACTCTAACTTTTGGCGGTGAGGATATATCAAGGAGCCTTCTCTATACACAAAGACATCACCAGACCTGGCCACAAATTCGAACAGATATGTTGACAAAGCCAATCGATCTGTTAATGTTAAATCAACTCAAAGAGTCATATTGTGAAATCAGAGAGGGGCAACTTGATGCTGTTGCAGTAGTTCATTCCTATGAGGACAAAGTGGTGCCAGGATCTCACAAGACAAGACTTACTGCTCTTAATGTTCCTCCTATGGGATTGTTCTATCCAACGTTTTTTGTTCCTGATGTGTATCCTCCTCCACCACGGACTTGGTTTAATGACCATGAGGATATGCTAGAAGATACATGGCAAATTGATTTTACCCGAAGGTCTGACATGTCCGACACTTTCTATCACAATGTTAATGGAGGAATGCCCATGTGGGAAAGTTATCCAACTTTTTCAACTAAGCCAAAAAAAGAAGAAAATCTTGGCCTTGCAGAGGCTATTACCAACTGCATTCTCTCAGCTGGTCGCATAGACATGCAAAGAAAATTATTTTGTAGCATACAATTGACTGGCGGCGTGGCTTTGACAAATGGTTTAGTTCCTGCTGTTGAAGAAAGAGTTTTACATGCTATTCCTCCAAATGAAGCAATTGATACAGTGGAGGTTATACAATCAAGGGCAAATCCAACATTTGTGTCATGGAAGGGCGGGGCGATTCTTGGAGTACTTGATGTAGGTAGGGATGCATGGATAAATCGGGAAGACTGGATTCAAAGTGGGATTCACGTTGGAAGTAACAGAAAATACAAGGATTCTTATTATCTTCAAGCTCAAGCTATGTGTTACATGAATTCTTGA

Protein sequence

>MsG0180004062.01.T01

MASKVSTFRDYLKSALPSQVMSERGSNLVVINPGSANIRIGLASQDTPYNIPHCIAHYTKQVPKKNVQDQMLNSQVTTAQHMEREKAYDVIASLLKIPFLDEEPSSNSFPRKGDIYTYHSWRMPLKDSPFTWTNVYEEVISSSSVSALDDVVLLGESREELNGRLETWRQALEAYGFRLSRNKTEYMEYTASKDETSESLDPKEGTDLKEIGASNQKFRKFICGEEALRISPTEPYCLCRPIRRGHLNISQHYPMQQVFEDLRAIWDWILIEKLHIPRNERNMYSAILVLPETFDNREIKEILSVVLEELCFGSAVVHQEGLAAVFGNGLSTACVVNIGAQVTSIICIEEGATLPSTAKTLTFGGEDISRSLLYTQRHHQTWPQIRTDMLTKPIDLLMLNQLKESYCEIREGQLDAVAVVHSYEDKVVPGSHKTRLTALNVPPMGLFYPTFFVPDVYPPPPRTWFNDHEDMLEDTWQIDFTRRSDMSDTFYHNVNGGMPMWESYPTFSTKPKKEENLGLAEAITNCILSAGRIDMQRKLFCSIQLTGGVALTNGLVPAVEERVLHAIPPNEAIDTVEVIQSRANPTFVSWKGGAILGVLDVGRDAWINREDWIQSGIHVGSNRKYKDSYYLQAQAMCYMNS*