Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024963.01.T01 | XP_003613171.1 | 91.189 | 227 | 17 | 1 | 7 | 230 | 89 | 315 | 1.92E-148 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024963.01.T01 | P04635 | 31.481 | 216 | 121 | 5 | 29 | 230 | 309 | 511 | 4.33E-21 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024963.01.T01 | G7K048 | 91.189 | 227 | 17 | 1 | 7 | 230 | 89 | 315 | 9.18e-149 | 432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000821.01 | MsG0580024963.01 | 0.820747 | 5.826219e-53 | 4.649558e-50 |
| MsG0180002796.01 | MsG0580024963.01 | 0.802800 | 4.723166e-49 | 2.335177e-46 |
| MsG0180003031.01 | MsG0580024963.01 | 0.805979 | 1.027414e-49 | 5.511929e-47 |
| MsG0180003725.01 | MsG0580024963.01 | 0.801250 | 9.837883e-49 | 4.676068e-46 |
| MsG0180005443.01 | MsG0580024963.01 | 0.805910 | 1.062700e-49 | 5.690873e-47 |
| MsG0180005445.01 | MsG0580024963.01 | 0.817830 | 2.690285e-52 | 1.980426e-49 |
| MsG0180005451.01 | MsG0580024963.01 | 0.808369 | 3.204448e-50 | 1.828990e-47 |
| MsG0180005493.01 | MsG0580024963.01 | 0.841328 | 5.079160e-58 | 7.436899e-55 |
| MsG0180005507.01 | MsG0580024963.01 | 0.805885 | 1.075342e-49 | 5.755038e-47 |
| MsG0280010816.01 | MsG0580024963.01 | 0.838364 | 3.004000e-57 | 4.014472e-54 |
| MsG0280010976.01 | MsG0580024963.01 | 0.839286 | 1.735148e-57 | 2.384956e-54 |
| MsG0380012020.01 | MsG0580024963.01 | 0.822612 | 2.158486e-53 | 1.815848e-50 |
| MsG0480020242.01 | MsG0580024963.01 | 0.802075 | 6.662824e-49 | 3.233757e-46 |
| MsG0480020540.01 | MsG0580024963.01 | 0.812759 | 3.607625e-51 | 2.313193e-48 |
| MsG0480021900.01 | MsG0580024963.01 | 0.823985 | 1.031016e-53 | 9.015646e-51 |
| MsG0480022026.01 | MsG0580024963.01 | 0.819418 | 1.173960e-52 | 9.028760e-50 |
| MsG0480023670.01 | MsG0580024963.01 | 0.813431 | 2.568674e-51 | 1.677148e-48 |
| MsG0480023729.01 | MsG0580024963.01 | 0.812817 | 3.503515e-51 | 2.249716e-48 |
| MsG0580024323.01 | MsG0580024963.01 | 0.801792 | 7.616964e-49 | 3.670295e-46 |
| MsG0580024418.01 | MsG0580024963.01 | 0.801640 | 8.186414e-49 | 3.929410e-46 |
| MsG0580024960.01 | MsG0580024963.01 | 0.826845 | 2.169809e-54 | 2.058660e-51 |
| MsG0580024963.01 | MsG0580025008.01 | 0.806655 | 7.404425e-50 | 4.040996e-47 |
| MsG0580024963.01 | MsG0580025025.01 | 0.807171 | 5.759326e-50 | 3.185613e-47 |
| MsG0580024963.01 | MsG0580025922.01 | 0.814636 | 1.393131e-51 | 9.397845e-49 |
| MsG0580024963.01 | MsG0580026664.01 | 0.800209 | 1.604350e-48 | 7.426945e-46 |
| MsG0580024963.01 | MsG0580028526.01 | 0.823588 | 1.277650e-53 | 1.104795e-50 |
| MsG0580024963.01 | MsG0580029208.01 | 0.800262 | 1.565454e-48 | 7.256715e-46 |
| MsG0580024963.01 | MsG0680034757.01 | 0.816677 | 4.888036e-52 | 3.486230e-49 |
| MsG0580024963.01 | MsG0680035340.01 | 0.819278 | 1.263049e-52 | 9.675973e-50 |
| MsG0580024963.01 | MsG0780036630.01 | 0.827304 | 1.684287e-54 | 1.619763e-51 |
| MsG0580024963.01 | MsG0780036633.01 | 0.837945 | 3.851129e-57 | 5.081397e-54 |
| MsG0580024963.01 | MsG0780036635.01 | 0.825073 | 5.716738e-54 | 5.157175e-51 |
| MsG0580024963.01 | MsG0780036773.01 | 0.839822 | 1.259212e-57 | 1.759633e-54 |
| MsG0580024963.01 | MsG0780036845.01 | 0.808585 | 2.880501e-50 | 1.653325e-47 |
| MsG0580024963.01 | MsG0780037975.01 | 0.809506 | 1.829804e-50 | 1.076257e-47 |
| MsG0580024963.01 | MsG0780040254.01 | 0.810089 | 1.370991e-50 | 8.188530e-48 |
| MsG0580024963.01 | MsG0780040389.01 | 0.800858 | 1.183360e-48 | 5.569264e-46 |
| MsG0580024963.01 | MsG0780041432.01 | 0.804602 | 1.996524e-49 | 1.033776e-46 |
| MsG0580024963.01 | MsG0780041498.01 | 0.808968 | 2.386644e-50 | 1.383750e-47 |
| MsG0580024963.01 | MsG0880043489.01 | 0.807873 | 4.086026e-50 | 2.301672e-47 |
| MsG0580024963.01 | MsG0880045914.01 | 0.813281 | 2.770793e-51 | 1.801700e-48 |
| MsG0580024963.01 | MsG0880046027.01 | 0.807210 | 5.650826e-50 | 3.128828e-47 |
| MsG0580024963.01 | MsG0880046560.01 | 0.827690 | 1.361092e-54 | 1.323577e-51 |
| MsG0580024963.01 | MsG0880046561.01 | 0.819680 | 1.022983e-52 | 7.925244e-50 |
| MsG0580024963.01 | MsG0880047437.01 | 0.806435 | 8.237439e-50 | 4.470681e-47 |
| MsG0380015289.01 | MsG0580024963.01 | 0.807720 | 4.403510e-50 | 2.470762e-47 |
| MsG0380015702.01 | MsG0580024963.01 | 0.836659 | 8.218275e-57 | 1.042483e-53 |
| MsG0380016397.01 | MsG0580024963.01 | 0.804813 | 1.804333e-49 | 9.394220e-47 |
| MsG0380017055.01 | MsG0580024963.01 | 0.827938 | 1.186613e-54 | 1.162359e-51 |
| MsG0380017229.01 | MsG0580024963.01 | 0.815200 | 1.044050e-51 | 7.151046e-49 |
| MsG0380017719.01 | MsG0580024963.01 | 0.802428 | 5.637960e-49 | 2.761138e-46 |
| MsG0380017939.01 | MsG0580024963.01 | 0.818756 | 1.660502e-52 | 1.253918e-49 |
| MsG0280006935.01 | MsG0580024963.01 | 0.831048 | 2.081821e-55 | 2.233126e-52 |
| MsG0280007048.01 | MsG0580024963.01 | 0.810288 | 1.241850e-50 | 7.455877e-48 |
| MsG0280007484.01 | MsG0580024963.01 | 0.810940 | 8.978248e-51 | 5.485440e-48 |
| MsG0280007984.01 | MsG0580024963.01 | 0.822442 | 2.364062e-53 | 1.979001e-50 |
| MsG0280008030.01 | MsG0580024963.01 | 0.812095 | 5.036973e-51 | 3.173041e-48 |
| MsG0280009996.01 | MsG0580024963.01 | 0.801256 | 9.808956e-49 | 4.663020e-46 |
| MsG0280010447.01 | MsG0580024963.01 | 0.823092 | 1.668073e-53 | 1.422381e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024963.01.T01 | MTR_5g033590 | 91.189 | 227 | 17 | 1 | 7 | 230 | 89 | 315 | 2.33e-152 | 432 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024963.01.T01 | AT1G10740 | 83.099 | 213 | 33 | 1 | 7 | 216 | 82 | 294 | 3.79e-132 | 379 |
| MsG0580024963.01.T01 | AT1G10740 | 83.099 | 213 | 33 | 1 | 7 | 216 | 82 | 294 | 2.12e-131 | 379 |
| MsG0580024963.01.T01 | AT1G10740 | 83.099 | 213 | 33 | 1 | 7 | 216 | 82 | 294 | 2.12e-131 | 379 |
| MsG0580024963.01.T01 | AT1G10740 | 83.099 | 213 | 33 | 1 | 7 | 216 | 82 | 294 | 2.12e-131 | 379 |
| MsG0580024963.01.T01 | AT1G23330 | 81.308 | 214 | 36 | 2 | 7 | 216 | 85 | 298 | 1.16e-127 | 367 |
| MsG0580024963.01.T01 | AT1G23330 | 81.308 | 214 | 36 | 2 | 7 | 216 | 85 | 298 | 3.60e-126 | 365 |
Find 61 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTCACAGCCTCATTTAA+TGG | 0.260581 | 5:-12238169 | MsG0580024963.01.T01:CDS |
| ATGAAAACACTTCTGAAAAC+TGG | 0.264059 | 5:-12238198 | MsG0580024963.01.T01:CDS |
| GGTCTTGTTGATTGTCTATT+GGG | 0.264640 | 5:-12237596 | MsG0580024963.01.T01:CDS |
| GGGTCTTGTTGATTGTCTAT+TGG | 0.281748 | 5:-12237597 | MsG0580024963.01.T01:CDS |
| ATGATTGGTTAGACATTTCC+TGG | 0.283512 | 5:-12237685 | MsG0580024963.01.T01:CDS |
| CTGCTACAACTTTGCCGAAT+TGG | 0.316438 | 5:-12237719 | MsG0580024963.01.T01:CDS |
| CAAAGTTGTAGCAGGCAAAT+AGG | 0.339906 | 5:+12237728 | None:intergenic |
| AGGGTTCTTGTTCCTGATCT+AGG | 0.340624 | 5:-12238988 | MsG0580024963.01.T01:CDS |
| GCAACAAATGCTTGCTGATA+AGG | 0.352451 | 5:-12238530 | MsG0580024963.01.T01:intron |
| GTCTCACAGCCTCATTTAAT+GGG | 0.352826 | 5:-12238168 | MsG0580024963.01.T01:CDS |
| ACAACAAGAACTTACTTTGA+TGG | 0.365759 | 5:-12238145 | MsG0580024963.01.T01:CDS |
| GGATGATCCTCATCCCATTC+AGG | 0.372175 | 5:+12238601 | None:intergenic |
| TTGGAGTGATACTTTATGAT+TGG | 0.393418 | 5:-12237700 | MsG0580024963.01.T01:CDS |
| GCGTGTGGACATTCGCAGTT+TGG | 0.405542 | 5:-12238785 | MsG0580024963.01.T01:CDS |
| AAAGGAGGACAAGTTGATTA+CGG | 0.410590 | 5:-12238824 | MsG0580024963.01.T01:CDS |
| CCACCTAACCTCTGCAGATA+AGG | 0.421832 | 5:+12239048 | None:intergenic |
| CATATATGCATTGTAAGATC+AGG | 0.422498 | 5:+12237536 | None:intergenic |
| CAACCTTATCTGCAGAGGTT+AGG | 0.432746 | 5:-12239051 | MsG0580024963.01.T01:CDS |
| GTCCATTTGCATCAGAGGAT+TGG | 0.432780 | 5:-12237565 | MsG0580024963.01.T01:CDS |
| GAATGCCCAACAAAATGAAT+AGG | 0.435663 | 5:+12238580 | None:intergenic |
| CTTTAACAAGCATATATGAT+AGG | 0.464515 | 5:-12238963 | MsG0580024963.01.T01:intron |
| ATCTTACAATGCATATATGT+TGG | 0.467571 | 5:-12237532 | MsG0580024963.01.T01:CDS |
| CATGGAGAAAGATGGGTGTA+TGG | 0.467842 | 5:-12237619 | MsG0580024963.01.T01:CDS |
| CACAGGACATTATCCTGAAT+GGG | 0.468205 | 5:-12238614 | MsG0580024963.01.T01:intron |
| ACACAGGACATTATCCTGAA+TGG | 0.469146 | 5:-12238615 | MsG0580024963.01.T01:intron |
| CATAAAGTATCACTCCAATT+CGG | 0.470275 | 5:+12237705 | None:intergenic |
| ATCCAATCCTCTGATGCAAA+TGG | 0.471478 | 5:+12237563 | None:intergenic |
| GGGTTCTTGTTCCTGATCTA+GGG | 0.477213 | 5:-12238987 | MsG0580024963.01.T01:CDS |
| CAACATGTCATGGAGAAAGA+TGG | 0.481355 | 5:-12237627 | MsG0580024963.01.T01:CDS |
| TTGTTTGCAGGCCAGGAGAC+GGG | 0.497495 | 5:-12237763 | MsG0580024963.01.T01:intron |
| ATATATGTTGGAGGTTGATC+TGG | 0.498451 | 5:-12237520 | MsG0580024963.01.T01:CDS |
| TGGGCATTCAGCTGGAGCAC+AGG | 0.504614 | 5:-12238566 | MsG0580024963.01.T01:CDS |
| TCTTGTTGTCCCATTAAATG+AGG | 0.504619 | 5:+12238159 | None:intergenic |
| TGCAGGTCCATTTGCATCAG+AGG | 0.508846 | 5:-12237570 | MsG0580024963.01.T01:CDS |
| CCTTATCTGCAGAGGTTAGG+TGG | 0.512943 | 5:-12239048 | MsG0580024963.01.T01:CDS |
| CTTGTTAAAGACCCTAGATC+AGG | 0.517004 | 5:+12238976 | None:intergenic |
| GAATTGTTCTATTATTTGAA+AGG | 0.524039 | 5:-12238842 | MsG0580024963.01.T01:CDS |
| GTCTTGTTGATTGTCTATTG+GGG | 0.525495 | 5:-12237595 | MsG0580024963.01.T01:CDS |
| ATATTGTCTTCAGGCATTCA+AGG | 0.527247 | 5:-12238224 | MsG0580024963.01.T01:intron |
| ATTGTTTGCAGGCCAGGAGA+CGG | 0.533381 | 5:-12237764 | MsG0580024963.01.T01:intron |
| AGCAGAGAAGAAAGATGAAA+GGG | 0.535883 | 5:-12239007 | MsG0580024963.01.T01:CDS |
| ATGGAGAAAGATGGGTGTAT+GGG | 0.538825 | 5:-12237618 | MsG0580024963.01.T01:CDS |
| TATTGTCTTCAGGCATTCAA+GGG | 0.539251 | 5:-12238223 | MsG0580024963.01.T01:intron |
| GATTGTCTATTGGGGAATGC+AGG | 0.541590 | 5:-12237587 | MsG0580024963.01.T01:CDS |
| TTGATCACTTCAACATGTCA+TGG | 0.541792 | 5:-12237637 | MsG0580024963.01.T01:CDS |
| GAGCAGAGAAGAAAGATGAA+AGG | 0.543867 | 5:-12239008 | MsG0580024963.01.T01:CDS |
| CAATTCGGCAAAGTTGTAGC+AGG | 0.545380 | 5:+12237720 | None:intergenic |
| TTACAATGCATATATGTTGG+AGG | 0.546283 | 5:-12237529 | MsG0580024963.01.T01:CDS |
| AACATGTCATGGAGAAAGAT+GGG | 0.556407 | 5:-12237626 | MsG0580024963.01.T01:CDS |
| TGAAAACACTTCTGAAAACT+GGG | 0.569323 | 5:-12238197 | MsG0580024963.01.T01:CDS |
| TTGTTCTATTATTTGAAAGG+AGG | 0.574381 | 5:-12238839 | MsG0580024963.01.T01:CDS |
| GGAGGTTGATCTGGAGAGTA+CGG | 0.575073 | 5:-12237511 | MsG0580024963.01.T01:CDS |
| ACATTATCCTGAATGGGATG+AGG | 0.584507 | 5:-12238608 | MsG0580024963.01.T01:CDS |
| ATATATGCATTGTAAGATCA+GGG | 0.594111 | 5:+12237537 | None:intergenic |
| CGTTGCAACCTTATCTGCAG+AGG | 0.607410 | 5:-12239056 | MsG0580024963.01.T01:CDS |
| TTTGGAAGAGTCTATGAACA+AGG | 0.609417 | 5:-12238767 | MsG0580024963.01.T01:intron |
| AGTACGGTTGCACATGAACA+AGG | 0.623239 | 5:-12237495 | MsG0580024963.01.T01:CDS |
| TGGAGAAAGATGGGTGTATG+GGG | 0.625359 | 5:-12237617 | MsG0580024963.01.T01:CDS |
| GATGAACACAGCAAGGCGTG+TGG | 0.687582 | 5:-12238800 | MsG0580024963.01.T01:CDS |
| TTACGGCGATGAACACAGCA+AGG | 0.703468 | 5:-12238807 | MsG0580024963.01.T01:CDS |
| TATGCATTGTAAGATCAGGG+AGG | 0.776906 | 5:+12237540 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAGCAAAATTT+AGG | + | Chr5:12238263-12238282 | None:intergenic | 10.0% |
| !! | AAAGATAAAAAATTGTAATT+TGG | - | Chr5:12238567-12238586 | MsG0580024963.01.T01:CDS | 10.0% |
| !! | AAATAAATAAGCAAAATTTA+GGG | + | Chr5:12238262-12238281 | None:intergenic | 10.0% |
| !! | AAGATAAAAAATTGTAATTT+GGG | - | Chr5:12238568-12238587 | MsG0580024963.01.T01:CDS | 10.0% |
| !!! | TAAATTTTGCTTATTTATTT+TGG | - | Chr5:12238262-12238281 | MsG0580024963.01.T01:intron | 10.0% |
| !! | GTTTGTAAAAATTCTTAAAA+GGG | - | Chr5:12237635-12237654 | MsG0580024963.01.T01:CDS | 15.0% |
| !! | TAATTAATATGAACAAACAA+TGG | + | Chr5:12238604-12238623 | None:intergenic | 15.0% |
| !! | TGTTTGTAAAAATTCTTAAA+AGG | - | Chr5:12237634-12237653 | MsG0580024963.01.T01:CDS | 15.0% |
| !! | CTTCTTCAATATAATATTGT+TGG | - | Chr5:12238484-12238503 | MsG0580024963.01.T01:intron | 20.0% |
| !! | GAATTGTTCTATTATTTGAA+AGG | - | Chr5:12237687-12237706 | MsG0580024963.01.T01:CDS | 20.0% |
| !! | TTGAAAAAAAAAACTCACAA+AGG | + | Chr5:12237855-12237874 | None:intergenic | 20.0% |
| !!! | TGAAAAACTACTACAATTTT+GGG | - | Chr5:12238868-12238887 | MsG0580024963.01.T01:intron | 20.0% |
| !!! | TGGTTATTTTGAATTGAAAT+TGG | - | Chr5:12238110-12238129 | MsG0580024963.01.T01:intron | 20.0% |
| !!! | TGTGTTTTGTTTTGTTATTT+TGG | - | Chr5:12237888-12237907 | MsG0580024963.01.T01:intron | 20.0% |
| !!! | TTTGAAATTTTGTTTCCTTA+GGG | - | Chr5:12237659-12237678 | MsG0580024963.01.T01:CDS | 20.0% |
| !!! | TTTTGAAATTTTGTTTCCTT+AGG | - | Chr5:12237658-12237677 | MsG0580024963.01.T01:CDS | 20.0% |
| ! | AAAACTCACAAAGGTAAATT+TGG | + | Chr5:12237846-12237865 | None:intergenic | 25.0% |
| ! | ATATATGCATTGTAAGATCA+GGG | + | Chr5:12238995-12239014 | None:intergenic | 25.0% |
| ! | ATCTTACAATGCATATATGT+TGG | - | Chr5:12238997-12239016 | MsG0580024963.01.T01:CDS | 25.0% |
| ! | CTTTAACAAGCATATATGAT+AGG | - | Chr5:12237566-12237585 | MsG0580024963.01.T01:CDS | 25.0% |
| ! | GCATATTTGGTTATTGTATA+AGG | - | Chr5:12238054-12238073 | MsG0580024963.01.T01:intron | 25.0% |
| ! | TGGTACAAAATGTATATAGT+TGG | - | Chr5:12238090-12238109 | MsG0580024963.01.T01:intron | 25.0% |
| ! | TTGTTCTATTATTTGAAAGG+AGG | - | Chr5:12237690-12237709 | MsG0580024963.01.T01:CDS | 25.0% |
| !! | ATCATCCTATTCATTTTGTT+GGG | - | Chr5:12237944-12237963 | MsG0580024963.01.T01:intron | 25.0% |
| !! | CTGAAAAACTACTACAATTT+TGG | - | Chr5:12238867-12238886 | MsG0580024963.01.T01:intron | 25.0% |
| !! | TATAAGGTAGTTTCTGATTT+TGG | - | Chr5:12238070-12238089 | MsG0580024963.01.T01:intron | 25.0% |
| !! | TTGTTATTCATATTGTCTTC+AGG | - | Chr5:12238296-12238315 | MsG0580024963.01.T01:intron | 25.0% |
| !!! | AGCATTCAAAATTTGCTAAA+TGG | + | Chr5:12238657-12238676 | None:intergenic | 25.0% |
| !!! | TATGTGTTTTGTTGCATATT+TGG | - | Chr5:12238041-12238060 | MsG0580024963.01.T01:intron | 25.0% |
| !!! | TTTGTTATTTTGGTATACAC+AGG | - | Chr5:12237898-12237917 | MsG0580024963.01.T01:intron | 25.0% |
| ACAACAAGAACTTACTTTGA+TGG | - | Chr5:12238384-12238403 | MsG0580024963.01.T01:intron | 30.0% | |
| AGCTAATTTCTATTGTTTGC+AGG | - | Chr5:12238754-12238773 | MsG0580024963.01.T01:intron | 30.0% | |
| ATGTCTTCAATCTTAAGTGT+AGG | + | Chr5:12238693-12238712 | None:intergenic | 30.0% | |
| CATATATGCATTGTAAGATC+AGG | + | Chr5:12238996-12239015 | None:intergenic | 30.0% | |
| CTGTAATTGTGCTATGTTTA+AGG | + | Chr5:12238442-12238461 | None:intergenic | 30.0% | |
| CTTAAGATTGAAGACATGTT+TGG | - | Chr5:12238696-12238715 | MsG0580024963.01.T01:intron | 30.0% | |
| TTACAATGCATATATGTTGG+AGG | - | Chr5:12239000-12239019 | MsG0580024963.01.T01:CDS | 30.0% | |
| TTGGAGTGATACTTTATGAT+TGG | - | Chr5:12238829-12238848 | MsG0580024963.01.T01:CDS | 30.0% | |
| TTTGACTAGAATTGACAGAA+AGG | - | Chr5:12238152-12238171 | MsG0580024963.01.T01:CDS | 30.0% | |
| ! | ATGAAAACACTTCTGAAAAC+TGG | - | Chr5:12238331-12238350 | MsG0580024963.01.T01:intron | 30.0% |
| ! | CATAAAGTATCACTCCAATT+CGG | + | Chr5:12238827-12238846 | None:intergenic | 30.0% |
| ! | GATCATCCTATTCATTTTGT+TGG | - | Chr5:12237943-12237962 | MsG0580024963.01.T01:intron | 30.0% |
| ! | TGAAAACACTTCTGAAAACT+GGG | - | Chr5:12238332-12238351 | MsG0580024963.01.T01:intron | 30.0% |
| !! | ATAATATTGTTGGCTTGAAG+AGG | - | Chr5:12238494-12238513 | MsG0580024963.01.T01:intron | 30.0% |
| !! | TAATATTGTTGGCTTGAAGA+GGG | - | Chr5:12238495-12238514 | MsG0580024963.01.T01:intron | 30.0% |
| AACATGTCATGGAGAAAGAT+GGG | - | Chr5:12238903-12238922 | MsG0580024963.01.T01:intron | 35.0% | |
| AAGAGTCTATGAACAAGGTT+TGG | - | Chr5:12237767-12237786 | MsG0580024963.01.T01:intron | 35.0% | |
| AGCAGAGAAGAAAGATGAAA+GGG | - | Chr5:12237522-12237541 | MsG0580024963.01.T01:CDS | 35.0% | |
| ATATTGTCTTCAGGCATTCA+AGG | - | Chr5:12238305-12238324 | MsG0580024963.01.T01:intron | 35.0% | |
| CACATGCTGTTACATTCAAT+AGG | - | Chr5:12238726-12238745 | MsG0580024963.01.T01:intron | 35.0% | |
| CTAGTCAAACCAATGTTTGA+AGG | + | Chr5:12238141-12238160 | None:intergenic | 35.0% | |
| GAATGCCCAACAAAATGAAT+AGG | + | Chr5:12237952-12237971 | None:intergenic | 35.0% | |
| TATTGTCTTCAGGCATTCAA+GGG | - | Chr5:12238306-12238325 | MsG0580024963.01.T01:intron | 35.0% | |
| TTGATCACTTCAACATGTCA+TGG | - | Chr5:12238892-12238911 | MsG0580024963.01.T01:intron | 35.0% | |
| TTTGGAAGAGTCTATGAACA+AGG | - | Chr5:12237762-12237781 | MsG0580024963.01.T01:intron | 35.0% | |
| ! | ATATATGTTGGAGGTTGATC+TGG | - | Chr5:12239009-12239028 | MsG0580024963.01.T01:CDS | 35.0% |
| ! | ATGATTGGTTAGACATTTCC+TGG | - | Chr5:12238844-12238863 | MsG0580024963.01.T01:CDS | 35.0% |
| ! | GGTGGTTTATCATATTTTGC+TGG | - | Chr5:12237499-12237518 | MsG0580024963.01.T01:CDS | 35.0% |
| ! | GTCTTGTTGATTGTCTATTG+GGG | - | Chr5:12238934-12238953 | MsG0580024963.01.T01:intron | 35.0% |
| ! | TCTTGTTGTCCCATTAAATG+AGG | + | Chr5:12238373-12238392 | None:intergenic | 35.0% |
| !! | AAAGGAGGACAAGTTGATTA+CGG | - | Chr5:12237705-12237724 | MsG0580024963.01.T01:CDS | 35.0% |
| !! | AATATTGTTGGCTTGAAGAG+GGG | - | Chr5:12238496-12238515 | MsG0580024963.01.T01:intron | 35.0% |
| !! | ATTGTAGTAGTTTTTCAGCC+AGG | + | Chr5:12238865-12238884 | None:intergenic | 35.0% |
| !! | GGTCTTGTTGATTGTCTATT+GGG | - | Chr5:12238933-12238952 | MsG0580024963.01.T01:intron | 35.0% |
| AACAGTTCATAGGGAGCAAA+AGG | - | Chr5:12238536-12238555 | MsG0580024963.01.T01:CDS | 40.0% | |
| ACACAGGACATTATCCTGAA+TGG | - | Chr5:12237914-12237933 | MsG0580024963.01.T01:intron | 40.0% | |
| ACAGTTCATAGGGAGCAAAA+GGG | - | Chr5:12238537-12238556 | MsG0580024963.01.T01:CDS | 40.0% | |
| ACATTATCCTGAATGGGATG+AGG | - | Chr5:12237921-12237940 | MsG0580024963.01.T01:intron | 40.0% | |
| AGAACAATTCTCTAGCCCTA+AGG | + | Chr5:12237677-12237696 | None:intergenic | 40.0% | |
| AGAGCATGCAACAGTTCATA+GGG | - | Chr5:12238527-12238546 | MsG0580024963.01.T01:intron | 40.0% | |
| AGTCTCACAGCCTCATTTAA+TGG | - | Chr5:12238360-12238379 | MsG0580024963.01.T01:intron | 40.0% | |
| ATCCAATCCTCTGATGCAAA+TGG | + | Chr5:12238969-12238988 | None:intergenic | 40.0% | |
| ATGGAGAAAGATGGGTGTAT+GGG | - | Chr5:12238911-12238930 | MsG0580024963.01.T01:intron | 40.0% | |
| ATTTCTATTGTTTGCAGGCC+AGG | - | Chr5:12238759-12238778 | MsG0580024963.01.T01:intron | 40.0% | |
| CAAAGTTGTAGCAGGCAAAT+AGG | + | Chr5:12238804-12238823 | None:intergenic | 40.0% | |
| CAACATGTCATGGAGAAAGA+TGG | - | Chr5:12238902-12238921 | MsG0580024963.01.T01:intron | 40.0% | |
| CACAGGACATTATCCTGAAT+GGG | - | Chr5:12237915-12237934 | MsG0580024963.01.T01:intron | 40.0% | |
| CTTGTTAAAGACCCTAGATC+AGG | + | Chr5:12237556-12237575 | None:intergenic | 40.0% | |
| GAGCAGAGAAGAAAGATGAA+AGG | - | Chr5:12237521-12237540 | MsG0580024963.01.T01:CDS | 40.0% | |
| GCTAAATGGAGATAACTCTC+TGG | + | Chr5:12238643-12238662 | None:intergenic | 40.0% | |
| GTCTCACAGCCTCATTTAAT+GGG | - | Chr5:12238361-12238380 | MsG0580024963.01.T01:intron | 40.0% | |
| TATGCATTGTAAGATCAGGG+AGG | + | Chr5:12238992-12239011 | None:intergenic | 40.0% | |
| TGAATGTAACAGCATGTGTC+AGG | + | Chr5:12238724-12238743 | None:intergenic | 40.0% | |
| TTGGTCATGCCTTCAAACAT+TGG | - | Chr5:12238129-12238148 | MsG0580024963.01.T01:intron | 40.0% | |
| ! | CAAATGCTTGCTGATAAGGT+TGG | - | Chr5:12238003-12238022 | MsG0580024963.01.T01:intron | 40.0% |
| ! | GCAACAAATGCTTGCTGATA+AGG | - | Chr5:12237999-12238018 | MsG0580024963.01.T01:intron | 40.0% |
| !! | GGGTCTTGTTGATTGTCTAT+TGG | - | Chr5:12238932-12238951 | MsG0580024963.01.T01:intron | 40.0% |
| AGGGTTCTTGTTCCTGATCT+AGG | - | Chr5:12237541-12237560 | MsG0580024963.01.T01:CDS | 45.0% | |
| AGTACGGTTGCACATGAACA+AGG | - | Chr5:12239034-12239053 | MsG0580024963.01.T01:CDS | 45.0% | |
| CAACCTTATCTGCAGAGGTT+AGG | - | Chr5:12237478-12237497 | MsG0580024963.01.T01:CDS | 45.0% | |
| CAATTCGGCAAAGTTGTAGC+AGG | + | Chr5:12238812-12238831 | None:intergenic | 45.0% | |
| CATGGAGAAAGATGGGTGTA+TGG | - | Chr5:12238910-12238929 | MsG0580024963.01.T01:intron | 45.0% | |
| CTGCTACAACTTTGCCGAAT+TGG | - | Chr5:12238810-12238829 | MsG0580024963.01.T01:CDS | 45.0% | |
| GATTGTCTATTGGGGAATGC+AGG | - | Chr5:12238942-12238961 | MsG0580024963.01.T01:intron | 45.0% | |
| GGGTTCTTGTTCCTGATCTA+GGG | - | Chr5:12237542-12237561 | MsG0580024963.01.T01:CDS | 45.0% | |
| GTCCATTTGCATCAGAGGAT+TGG | - | Chr5:12238964-12238983 | MsG0580024963.01.T01:CDS | 45.0% | |
| TCATAGGGAGCAAAAGGGAA+TGG | - | Chr5:12238542-12238561 | MsG0580024963.01.T01:CDS | 45.0% | |
| TGGAGAAAGATGGGTGTATG+GGG | - | Chr5:12238912-12238931 | MsG0580024963.01.T01:intron | 45.0% | |
| ! | CATTTTGTTGGGCATTCAGC+TGG | - | Chr5:12237955-12237974 | MsG0580024963.01.T01:intron | 45.0% |
| ! | GAGAGCATGCAACAGTTCAT+AGG | - | Chr5:12238526-12238545 | MsG0580024963.01.T01:intron | 45.0% |
| ! | TTCAATGTTTTCCCGTCTCC+TGG | + | Chr5:12238780-12238799 | None:intergenic | 45.0% |
| !! | CTTGCTGATAAGGTTGGTCT+TGG | - | Chr5:12238009-12238028 | MsG0580024963.01.T01:intron | 45.0% |
| ATTGTTTGCAGGCCAGGAGA+CGG | - | Chr5:12238765-12238784 | MsG0580024963.01.T01:intron | 50.0% | |
| CCACCTAACCTCTGCAGATA+AGG | + | Chr5:12237484-12237503 | None:intergenic | 50.0% | |
| CCTTATCTGCAGAGGTTAGG+TGG | - | Chr5:12237481-12237500 | MsG0580024963.01.T01:CDS | 50.0% | |
| GGATGATCCTCATCCCATTC+AGG | + | Chr5:12237931-12237950 | None:intergenic | 50.0% | |
| TGCAGGTCCATTTGCATCAG+AGG | - | Chr5:12238959-12238978 | MsG0580024963.01.T01:intron | 50.0% | |
| TTACGGCGATGAACACAGCA+AGG | - | Chr5:12237722-12237741 | MsG0580024963.01.T01:CDS | 50.0% | |
| ! | GGAGGTTGATCTGGAGAGTA+CGG | - | Chr5:12239018-12239037 | MsG0580024963.01.T01:CDS | 50.0% |
| GATGAACACAGCAAGGCGTG+TGG | - | Chr5:12237729-12237748 | MsG0580024963.01.T01:CDS | 55.0% | |
| GCGTGTGGACATTCGCAGTT+TGG | - | Chr5:12237744-12237763 | MsG0580024963.01.T01:CDS | 55.0% | |
| TTGTTTGCAGGCCAGGAGAC+GGG | - | Chr5:12238766-12238785 | MsG0580024963.01.T01:intron | 55.0% | |
| TGGGCATTCAGCTGGAGCAC+AGG | - | Chr5:12237963-12237982 | MsG0580024963.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 12237475 | 12239076 | 12237475 | ID=MsG0580024963.01;Name=MsG0580024963.01 |
| Chr5 | mRNA | 12237475 | 12239076 | 12237475 | ID=MsG0580024963.01.T01;Parent=MsG0580024963.01;Name=MsG0580024963.01.T01;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|5|0|237 |
| Chr5 | exon | 12238964 | 12239076 | 12238964 | ID=MsG0580024963.01.T01:exon:19869;Parent=MsG0580024963.01.T01 |
| Chr5 | exon | 12238768 | 12238871 | 12238768 | ID=MsG0580024963.01.T01:exon:19868;Parent=MsG0580024963.01.T01 |
| Chr5 | exon | 12238531 | 12238631 | 12238531 | ID=MsG0580024963.01.T01:exon:19867;Parent=MsG0580024963.01.T01 |
| Chr5 | exon | 12238139 | 12238233 | 12238139 | ID=MsG0580024963.01.T01:exon:19866;Parent=MsG0580024963.01.T01 |
| Chr5 | exon | 12237475 | 12237775 | 12237475 | ID=MsG0580024963.01.T01:exon:19865;Parent=MsG0580024963.01.T01 |
| Chr5 | CDS | 12238964 | 12239076 | 12238964 | ID=MsG0580024963.01.T01:cds;Parent=MsG0580024963.01.T01 |
| Chr5 | CDS | 12238768 | 12238871 | 12238768 | ID=MsG0580024963.01.T01:cds;Parent=MsG0580024963.01.T01 |
| Chr5 | CDS | 12238531 | 12238631 | 12238531 | ID=MsG0580024963.01.T01:cds;Parent=MsG0580024963.01.T01 |
| Chr5 | CDS | 12238139 | 12238233 | 12238139 | ID=MsG0580024963.01.T01:cds;Parent=MsG0580024963.01.T01 |
| Chr5 | CDS | 12237475 | 12237775 | 12237475 | ID=MsG0580024963.01.T01:cds;Parent=MsG0580024963.01.T01 |
| Gene Sequence |
| Protein sequence |
