AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003031.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003031.01.T01 MTR_0136s0060 97.674 344 8 0 1 344 1 344 0.0 676
MsG0180003031.01.T01 MTR_7g093500 70.141 355 94 3 1 344 1 354 1.11e-176 494
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003031.01.T01 AT3G12050 67.867 361 98 3 1 344 1 360 9.14e-175 489
MsG0180003031.01.T01 AT3G12050 60.942 361 84 4 1 344 1 321 1.14e-147 419

Find 110 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTGCTGCTACTTATTTC+TGG 0.128699 1:-55288350 MsG0180003031.01.T01:three_prime_UTR
CTGATGAAGATCCTGAAATT+AGG 0.214851 1:-55290541 MsG0180003031.01.T01:CDS
ATTCGATCTGTGTTTGGTTT+TGG 0.228632 1:-55288570 MsG0180003031.01.T01:CDS
GAAAGGGAAAGGGTTGATTT+TGG 0.239317 1:-55290462 MsG0180003031.01.T01:CDS
GAGATTGTTGAAGAAGGTTT+TGG 0.251613 1:+55290796 None:intergenic
TTTGGAGAAGGTTAGGGTTT+GGG 0.255145 1:-55290444 MsG0180003031.01.T01:CDS
GTCTGTTACAGGGACGAATT+TGG 0.286496 1:-55290135 MsG0180003031.01.T01:CDS
TTAACACTAACCCTAATTTC+AGG 0.309839 1:+55290530 None:intergenic
CGCTACCAAACCCAATTTCA+TGG 0.331238 1:-55290921 MsG0180003031.01.T01:exon
TTCCCCTTCTCCTTCGCAAC+CGG 0.351213 1:+55290314 None:intergenic
CAGAGGATTCGATCTGTGTT+TGG 0.353659 1:-55288576 MsG0180003031.01.T01:CDS
ATTGTTCAGAGATGGAGATT+TGG 0.368974 1:-55290092 MsG0180003031.01.T01:CDS
GATGATGATAATGTTGGGTT+TGG 0.383652 1:+55290993 None:intergenic
TTGTGGACGTTTGTTCCGTC+TGG 0.386272 1:+55290854 None:intergenic
GTGTTTGAGGAGCCTGAATC+TGG 0.392808 1:-55288788 MsG0180003031.01.T01:CDS
TTTGGACCATTCTAAACAAT+TGG 0.399655 1:+55290814 None:intergenic
CCATTCTAAACAATTGGTTT+CGG 0.401246 1:+55290820 None:intergenic
CCCAATTTCATGGCAAAATA+CGG 0.402373 1:-55290911 MsG0180003031.01.T01:exon
CTTAATAACTTTATAAAGAC+AGG 0.402900 1:+55288146 None:intergenic
ACGAATTTGGAGTTGGAAGA+AGG 0.406217 1:-55290122 MsG0180003031.01.T01:CDS
TGAATGAGAAGTTTAATTGT+AGG 0.410407 1:-55290268 MsG0180003031.01.T01:CDS
GCGAAGGAGAAGGGGAAGAA+AGG 0.412874 1:-55290308 MsG0180003031.01.T01:CDS
GCATTCTCATCAGAGATATA+CGG 0.417274 1:+55290563 None:intergenic
AGGGTTAGTGTTAAAGAAGA+AGG 0.422944 1:-55290521 MsG0180003031.01.T01:CDS
GGAAGTTGATTGTTCAGAGA+TGG 0.424875 1:-55290100 MsG0180003031.01.T01:CDS
AAAGGAGGAGGAAGTTGTTC+CGG 0.425406 1:-55290333 MsG0180003031.01.T01:CDS
TTATGATGGATGAGAATAGA+TGG 0.427946 1:-55290226 MsG0180003031.01.T01:CDS
CTCTCAAGATCATCCTTAAC+CGG 0.431014 1:+55290398 None:intergenic
AATTACGATGATGATAATGT+TGG 0.431830 1:+55290987 None:intergenic
TTTAAGGAAACAGAAACAAT+TGG 0.433336 1:+55290947 None:intergenic
GTCGAAAGGAGGACCGGTTA+AGG 0.436496 1:-55290411 MsG0180003031.01.T01:CDS
AGAGATGGAGATTTGGAAGT+TGG 0.439510 1:-55290085 MsG0180003031.01.T01:CDS
TGATGAAGATCCTGAAATTA+GGG 0.441615 1:-55290540 MsG0180003031.01.T01:CDS
ACGGAACAAACGTCCACAAC+TGG 0.451199 1:-55290850 MsG0180003031.01.T01:CDS
CCGAAACCAATTGTTTAGAA+TGG 0.453161 1:-55290820 MsG0180003031.01.T01:CDS
GGTTGCGGTGGAGAAGAAAA+AGG 0.455227 1:-55290351 MsG0180003031.01.T01:CDS
AAATCAGCGTTAACCTTACC+TGG 0.457043 1:-55290649 MsG0180003031.01.T01:CDS
CTCTCTCTTGTTTATTACCA+TGG 0.457449 1:-55288318 MsG0180003031.01.T01:three_prime_UTR
ATGATGATAATGTTGGGTTT+GGG 0.457694 1:+55290994 None:intergenic
ATTACGATGATGATAATGTT+GGG 0.458352 1:+55290988 None:intergenic
GAAGTTTAATTGTAGGGCTA+AGG 0.460037 1:-55290261 MsG0180003031.01.T01:CDS
GTTACAATTATCCGTATCCT+TGG 0.473494 1:-55288233 MsG0180003031.01.T01:three_prime_UTR
GCTAGGATTAGTAAAGAGGT+TGG 0.477381 1:-55290182 MsG0180003031.01.T01:CDS
CGAAGGAGAAGGGGAAGAAA+GGG 0.479191 1:-55290307 MsG0180003031.01.T01:CDS
GGATTTGTTTGAGATTATGA+TGG 0.479564 1:-55290240 MsG0180003031.01.T01:CDS
GGTGAAGAGATTGTTGAAGA+AGG 0.479610 1:+55290790 None:intergenic
ATATGGTTAGATCATTGGAT+TGG 0.479618 1:-55288491 MsG0180003031.01.T01:three_prime_UTR
TAATGCTAGGATTAGTAAAG+AGG 0.482426 1:-55290186 MsG0180003031.01.T01:CDS
GGATGATCTTGAGAGTAAGA+AGG 0.484093 1:-55290390 MsG0180003031.01.T01:CDS
CGAATTTGGAGTTGGAAGAA+GGG 0.486824 1:-55290121 MsG0180003031.01.T01:CDS
GTGATGAATTTGAAAGGGAA+AGG 0.487842 1:-55290473 MsG0180003031.01.T01:CDS
GACATTAACGTAGGCTTCGC+CGG 0.490050 1:+55290700 None:intergenic
ACCACTGATTGCATTCCATC+TGG 0.497251 1:+55290062 None:intergenic
CTGATGTGCCTGAGGAAGAC+AGG 0.498106 1:-55288739 MsG0180003031.01.T01:intron
ACAATTGGTGTGGTTGTTTG+AGG 0.499456 1:+55290962 None:intergenic
GAATGAGAAGTTTAATTGTA+GGG 0.508190 1:-55290267 MsG0180003031.01.T01:CDS
GTCTTTCACAATAAAATGAT+CGG 0.508644 1:+55288392 None:intergenic
GTTCCGGTTGCGAAGGAGAA+GGG 0.512376 1:-55290317 MsG0180003031.01.T01:CDS
TAATTCTGTCACCAAGGATA+CGG 0.518113 1:+55288222 None:intergenic
GCGATTCACCTTCCCAGGTA+AGG 0.520529 1:+55290636 None:intergenic
TTTGCTGAAGAATTCGGTTG+CGG 0.522627 1:-55290366 MsG0180003031.01.T01:CDS
GTAGGTGAGAATTGTGTTTG+AGG 0.536288 1:-55288801 MsG0180003031.01.T01:intron
CAAACGTCCACAACTGGCAC+TGG 0.540509 1:-55290844 MsG0180003031.01.T01:CDS
AACACTAACCTGTCTTCCTC+AGG 0.540960 1:+55288731 None:intergenic
ACGACCGTAACTCCAGATTC+AGG 0.541200 1:+55288776 None:intergenic
GTCACGCGATTCACCTTCCC+AGG 0.543146 1:+55290631 None:intergenic
TACAGGGACGAATTTGGAGT+TGG 0.543461 1:-55290129 MsG0180003031.01.T01:CDS
AGGGATGTGATGAATTTGAA+AGG 0.544348 1:-55290479 MsG0180003031.01.T01:CDS
AGATTTGGAAGTTGGCCAGA+TGG 0.551860 1:-55290077 MsG0180003031.01.T01:CDS
ATGGATGAGAATAGATGGAA+GGG 0.554235 1:-55290221 MsG0180003031.01.T01:CDS
AGGATTAGTAAAGAGGTTGG+AGG 0.555671 1:-55290179 MsG0180003031.01.T01:CDS
CAAACACAGATCGAATCCTC+TGG 0.557147 1:+55288577 None:intergenic
TTTCGGACCAGTGCCAGTTG+TGG 0.558239 1:+55290837 None:intergenic
GCGAAGCCTACGTTAATGTC+CGG 0.558433 1:-55290697 MsG0180003031.01.T01:CDS
GGAAGTTGTTCCGGTTGCGA+AGG 0.564068 1:-55290324 MsG0180003031.01.T01:CDS
CGGAAGGGTAAAATCATCCC+TGG 0.564473 1:-55290677 MsG0180003031.01.T01:CDS
TGTTCCGGTTGCGAAGGAGA+AGG 0.567767 1:-55290318 MsG0180003031.01.T01:CDS
GGTGAATCGCGTGACTCTGA+AGG 0.573999 1:-55290623 MsG0180003031.01.T01:CDS
AGCGTTAACCTTACCTGGGA+AGG 0.576402 1:-55290644 MsG0180003031.01.T01:CDS
TGATGAATTTGAAAGGGAAA+GGG 0.578004 1:-55290472 MsG0180003031.01.T01:CDS
TTCCGGTTGCGAAGGAGAAG+GGG 0.581500 1:-55290316 MsG0180003031.01.T01:CDS
GATGGATGAGAATAGATGGA+AGG 0.585625 1:-55290222 MsG0180003031.01.T01:CDS
GGAGCCTGAATCTGGAGTTA+CGG 0.587155 1:-55288780 MsG0180003031.01.T01:CDS
GAGTATGTCGAAAGGAGGAC+CGG 0.587394 1:-55290417 MsG0180003031.01.T01:CDS
TTAACGCTGATTTCGTAACC+AGG 0.597149 1:+55290659 None:intergenic
GGGATGTGATGAATTTGAAA+GGG 0.599850 1:-55290478 MsG0180003031.01.T01:CDS
ATCGCGTGACTCTGAAGGAA+AGG 0.603713 1:-55290618 MsG0180003031.01.T01:CDS
GGAAACAGAAACAATTGGTG+TGG 0.607765 1:+55290952 None:intergenic
GCTGAAGAATTCGGTTGCGG+TGG 0.610763 1:-55290363 MsG0180003031.01.T01:CDS
ATTTGGGAATGCGACTGTTG+TGG 0.614623 1:-55288634 MsG0180003031.01.T01:CDS
TTCATGGCAAAATACGGCGA+AGG 0.619333 1:-55290905 MsG0180003031.01.T01:CDS
AGCCTACGTTAATGTCCGGA+AGG 0.620834 1:-55290693 MsG0180003031.01.T01:CDS
TGGGTTGAGAGTATGTCGAA+AGG 0.623680 1:-55290425 MsG0180003031.01.T01:CDS
AAATAGACATACAACGAGCA+AGG 0.627603 1:+55288290 None:intergenic
CAACGAGCAAGGATCATCCA+TGG 0.647351 1:+55288301 None:intergenic
GCCTACGTTAATGTCCGGAA+GGG 0.648817 1:-55290692 MsG0180003031.01.T01:CDS
AACACACACTGATGTGCCTG+AGG 0.650288 1:-55288747 MsG0180003031.01.T01:CDS
ATCGTAGAAGACAGACCAGA+CGG 0.651665 1:-55290869 MsG0180003031.01.T01:CDS
TGTTGTGGAGAATACAGAGA+GGG 0.654870 1:-55288619 MsG0180003031.01.T01:CDS
ACAAGTTAATTCTGTCACCA+AGG 0.668216 1:+55288216 None:intergenic
TAACGCTGATTTCGTAACCA+GGG 0.673358 1:+55290660 None:intergenic
GCCAGATGGAATGCAATCAG+TGG 0.676354 1:-55290063 MsG0180003031.01.T01:intron
GTTGAGAGTATGTCGAAAGG+AGG 0.683927 1:-55290422 MsG0180003031.01.T01:CDS
AATCAGCGTTAACCTTACCT+GGG 0.690159 1:-55290648 MsG0180003031.01.T01:CDS
GGAGGGATCTCATATTCCAG+AGG 0.690910 1:-55288593 MsG0180003031.01.T01:CDS
ACGGCGAAGGAGACAAACGT+TGG 0.691467 1:-55290892 MsG0180003031.01.T01:CDS
ACCCTTCCGGACATTAACGT+AGG 0.692824 1:+55290691 None:intergenic
TTGTGGAGAATACAGAGAGG+GGG 0.708289 1:-55288617 MsG0180003031.01.T01:CDS
CTGTTGTGGAGAATACAGAG+AGG 0.720812 1:-55288620 MsG0180003031.01.T01:CDS
GTTGTGGAGAATACAGAGAG+GGG 0.741456 1:-55288618 MsG0180003031.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTGTAAAAATTATAAATTAT+TGG + Chr1:55289926-55289945 None:intergenic 10.0%
!!! ATTTTAAAATTTGACAATTT+GGG + Chr1:55289804-55289823 None:intergenic 10.0%
!!! ATTTTTGTTTTCTTTTTATA+TGG - Chr1:55290637-55290656 MsG0180003031.01.T01:CDS 10.0%
!!! TATTTTAAAATTTGACAATT+TGG + Chr1:55289805-55289824 None:intergenic 10.0%
!! AAATGCAAAATAATGAAAAT+AGG + Chr1:55289540-55289559 None:intergenic 15.0%
!! AATGCAAAATAATGAAAATA+GGG + Chr1:55289539-55289558 None:intergenic 15.0%
!! TAGATTAAATATTTGATAGA+GGG - Chr1:55289777-55289796 MsG0180003031.01.T01:intron 15.0%
!!! AAACTGTCAAATTTTAAAAT+AGG - Chr1:55289736-55289755 MsG0180003031.01.T01:intron 15.0%
!!! AACTGTCAAATTTTAAAATA+GGG - Chr1:55289737-55289756 MsG0180003031.01.T01:intron 15.0%
!!! ATTGTCAAATTTTAAAATAG+AGG - Chr1:55289806-55289825 MsG0180003031.01.T01:intron 15.0%
!!! ATTTTAAAATTTGACAGTTT+AGG + Chr1:55289736-55289755 None:intergenic 15.0%
!!! CAAATATTTGATCTAAAATA+TGG + Chr1:55289704-55289723 None:intergenic 15.0%
!!! TTGTCAAATTTTAAAATAGA+GGG - Chr1:55289807-55289826 MsG0180003031.01.T01:intron 15.0%
!! ATAGCTTATCAAAATAGTTT+AGG - Chr1:55289492-55289511 MsG0180003031.01.T01:intron 20.0%
!! ATGCAAAATAATGAAAATAG+GGG + Chr1:55289538-55289557 None:intergenic 20.0%
!! CTAGATTAAATATTTGATAG+AGG - Chr1:55289776-55289795 MsG0180003031.01.T01:intron 20.0%
!! TAGATCAAATATTTGATAGA+GGG - Chr1:55289709-55289728 MsG0180003031.01.T01:intron 20.0%
!! TTAGATCAAATATTTGATAG+AGG - Chr1:55289708-55289727 MsG0180003031.01.T01:intron 20.0%
!!! AAAAATTGTTTCTTTGACAA+AGG + Chr1:55289968-55289987 None:intergenic 20.0%
!!! AAAACTGTTGATTTCAAAAT+AGG + Chr1:55289571-55289590 None:intergenic 20.0%
!!! AAACTGTCAAATTTTAAAGT+AGG - Chr1:55289834-55289853 MsG0180003031.01.T01:intron 20.0%
!!! AAACTGTTGATTTCAAAATA+GGG + Chr1:55289570-55289589 None:intergenic 20.0%
!!! AACTGTCAAATTTTAAAGTA+GGG - Chr1:55289835-55289854 MsG0180003031.01.T01:intron 20.0%
!!! AAGGTTTTTTCTATTTTGTA+TGG - Chr1:55289139-55289158 MsG0180003031.01.T01:intron 20.0%
!!! ACTGTCAAATTTTAAAATAG+GGG - Chr1:55289738-55289757 MsG0180003031.01.T01:intron 20.0%
!!! ATTAAGCTTTATATCCAAAA+AGG - Chr1:55290031-55290050 MsG0180003031.01.T01:intron 20.0%
!!! CTTATTTCTATAAACTCTAT+AGG - Chr1:55289465-55289484 MsG0180003031.01.T01:intron 20.0%
!!! TATTTTGAAATCAACAGTTT+TGG - Chr1:55289570-55289589 MsG0180003031.01.T01:intron 20.0%
!!! TGATTTGTAGATTATTTTCA+TGG + Chr1:55288401-55288420 None:intergenic 20.0%
!!! TTAAGCTTTATATCCAAAAA+GGG - Chr1:55290032-55290051 MsG0180003031.01.T01:intron 20.0%
!!! TTAAGGTTTTAAATCATAGT+TGG - Chr1:55289262-55289281 MsG0180003031.01.T01:intron 20.0%
!!! TTCTAGTTATGTTTGAATTA+AGG - Chr1:55289120-55289139 MsG0180003031.01.T01:intron 20.0%
!!! TTTGATTATTTTGGTTTTGA+TGG - Chr1:55290436-55290455 MsG0180003031.01.T01:CDS 20.0%
!!! TTTTTATATGGTTAGATCAT+TGG - Chr1:55290649-55290668 MsG0180003031.01.T01:CDS 20.0%
! AAAAATTGCGAATAGTTTGA+GGG - Chr1:55288647-55288666 MsG0180003031.01.T01:intron 25.0%
! AATTAAGTGCTTATAGCATA+AGG + Chr1:55290014-55290033 None:intergenic 25.0%
! CTTCAATTGCAATTATATTG+AGG + Chr1:55290132-55290151 None:intergenic 25.0%
! GAATGAGAAGTTTAATTGTA+GGG - Chr1:55288878-55288897 MsG0180003031.01.T01:intron 25.0%
! GAATTCTAAATTACCTAATG+TGG + Chr1:55290194-55290213 None:intergenic 25.0%
! GTCTTTCACAATAAAATGAT+CGG + Chr1:55290678-55290697 None:intergenic 25.0%
! TATGACGTCATTTGAAAAAT+AGG + Chr1:55289678-55289697 None:intergenic 25.0%
! TGAATGAGAAGTTTAATTGT+AGG - Chr1:55288877-55288896 MsG0180003031.01.T01:intron 25.0%
! TGAATGATTGTGAATTATGT+AGG - Chr1:55290326-55290345 MsG0180003031.01.T01:CDS 25.0%
! TGCAAAATAATGAAAATAGG+GGG + Chr1:55289537-55289556 None:intergenic 25.0%
! TTACGCAAAATGATGAAAAT+AGG - Chr1:55289865-55289884 MsG0180003031.01.T01:intron 25.0%
! TTGATTTCAAATGCAGATTT+GGG - Chr1:55290495-55290514 MsG0180003031.01.T01:CDS 25.0%
! TTTAAGGAAACAGAAACAAT+TGG + Chr1:55288201-55288220 None:intergenic 25.0%
! TTTCTATAAACTCTATAGGA+TGG - Chr1:55289469-55289488 MsG0180003031.01.T01:intron 25.0%
!! AATTACGATGATGATAATGT+TGG + Chr1:55288161-55288180 None:intergenic 25.0%
!! ATTACGATGATGATAATGTT+GGG + Chr1:55288160-55288179 None:intergenic 25.0%
!! ATTGATTTCAAATGCAGATT+TGG - Chr1:55290494-55290513 MsG0180003031.01.T01:CDS 25.0%
!! CATTAGGTAATTTAGAATTC+TGG - Chr1:55290194-55290213 MsG0180003031.01.T01:CDS 25.0%
!! CTTATTTGAGTTTGTGTATT+AGG - Chr1:55289308-55289327 MsG0180003031.01.T01:intron 25.0%
!! TATTGCCTTAATTGCAATTT+TGG + Chr1:55289895-55289914 None:intergenic 25.0%
!! TTTTCATCATTTTGCGTAAT+TGG + Chr1:55289864-55289883 None:intergenic 25.0%
!!! AAATCAGGGTTTAACTTTTA+CGG - Chr1:55290101-55290120 MsG0180003031.01.T01:CDS 25.0%
!!! ACTGTCAAATTTTAAAGTAG+GGG - Chr1:55289836-55289855 MsG0180003031.01.T01:intron 25.0%
!!! CTGTCAAATTTTAAAATAGG+GGG - Chr1:55289739-55289758 MsG0180003031.01.T01:intron 25.0%
!!! GGTTAGTGTTTTGATTATTT+TGG - Chr1:55290427-55290446 MsG0180003031.01.T01:CDS 25.0%
!!! GTGAGTTTAGTATTTTTGAT+GGG - Chr1:55288988-55289007 MsG0180003031.01.T01:intron 25.0%
!!! GTGTTTTCTGTTTAGAATTA+AGG - Chr1:55289245-55289264 MsG0180003031.01.T01:intron 25.0%
!!! TGTCAAATTTTAAAATAGGG+GGG - Chr1:55289740-55289759 MsG0180003031.01.T01:intron 25.0%
!!! TTTGATGGATAATTTTGTGT+TGG - Chr1:55290451-55290470 MsG0180003031.01.T01:CDS 25.0%
AAAAAAGTCGAAAAGCTTTC+CGG - Chr1:55288426-55288445 MsG0180003031.01.T01:three_prime_UTR 30.0%
AACCACGTCATTTGAAAAAT+AGG + Chr1:55289604-55289623 None:intergenic 30.0%
ACTTGTGACACTTGTATATT+AGG - Chr1:55289338-55289357 MsG0180003031.01.T01:intron 30.0%
ATATGGTTAGATCATTGGAT+TGG - Chr1:55290654-55290673 MsG0180003031.01.T01:CDS 30.0%
CAAAAAGGGTTGTAATATTG+CGG - Chr1:55290046-55290065 MsG0180003031.01.T01:intron 30.0%
CGGATATTTGTGGTTAAATA+CGG - Chr1:55290066-55290085 MsG0180003031.01.T01:CDS 30.0%
GAAAAATTGCGAATAGTTTG+AGG - Chr1:55288646-55288665 MsG0180003031.01.T01:intron 30.0%
TGATGAAGATCCTGAAATTA+GGG - Chr1:55288605-55288624 MsG0180003031.01.T01:CDS 30.0%
TGATGAATTTGAAAGGGAAA+GGG - Chr1:55288673-55288692 MsG0180003031.01.T01:intron 30.0%
TGTAATATTGCGGATATTTG+TGG - Chr1:55290056-55290075 MsG0180003031.01.T01:intron 30.0%
TTAACACTAACCCTAATTTC+AGG + Chr1:55288618-55288637 None:intergenic 30.0%
TTTGGACCATTCTAAACAAT+TGG + Chr1:55288334-55288353 None:intergenic 30.0%
! CCATTCTAAACAATTGGTTT+CGG + Chr1:55288328-55288347 None:intergenic 30.0%
! CTTATTCGAGTTTATAGACT+AGG - Chr1:55289203-55289222 MsG0180003031.01.T01:intron 30.0%
! GGATTTGTTTGAGATTATGA+TGG - Chr1:55288905-55288924 MsG0180003031.01.T01:intron 30.0%
! TAATGCTAGGATTAGTAAAG+AGG - Chr1:55288959-55288978 MsG0180003031.01.T01:intron 30.0%
!! GGTGAGTTTAGTATTTTTGA+TGG - Chr1:55288987-55289006 MsG0180003031.01.T01:intron 30.0%
!! TTATGATGGATGAGAATAGA+TGG - Chr1:55288919-55288938 MsG0180003031.01.T01:intron 30.0%
!!! CTGTCAAATTTTAAAGTAGG+GGG - Chr1:55289837-55289856 MsG0180003031.01.T01:intron 30.0%
!!! GTCAAATTTTAAAATAGGGG+GGG - Chr1:55289741-55289760 MsG0180003031.01.T01:intron 30.0%
!!! TATGGTTTTAGATTGTGTTG+CGG - Chr1:55289157-55289176 MsG0180003031.01.T01:intron 30.0%
AAATAGACATACAACGAGCA+AGG + Chr1:55290858-55290877 None:intergenic 35.0%
ACAAGTTAATTCTGTCACCA+AGG + Chr1:55290932-55290951 None:intergenic 35.0%
AGATTGTGTTGCGGTATATA+GGG - Chr1:55289166-55289185 MsG0180003031.01.T01:intron 35.0%
AGGGATGTGATGAATTTGAA+AGG - Chr1:55288666-55288685 MsG0180003031.01.T01:intron 35.0%
ATGGATGAGAATAGATGGAA+GGG - Chr1:55288924-55288943 MsG0180003031.01.T01:intron 35.0%
ATTGTTCAGAGATGGAGATT+TGG - Chr1:55289053-55289072 MsG0180003031.01.T01:intron 35.0%
CCCAATTTCATGGCAAAATA+CGG - Chr1:55288234-55288253 MsG0180003031.01.T01:three_prime_UTR 35.0%
CCGAAACCAATTGTTTAGAA+TGG - Chr1:55288325-55288344 MsG0180003031.01.T01:three_prime_UTR 35.0%
CCTTTGTTCAAAACCTTGTT+CGG - Chr1:55290280-55290299 MsG0180003031.01.T01:CDS 35.0%
CGCAAAATGATGAAAATAGG+AGG - Chr1:55289868-55289887 MsG0180003031.01.T01:intron 35.0%
CGTGGTTTATGATATGATGA+TGG - Chr1:55289617-55289636 MsG0180003031.01.T01:intron 35.0%
CTGATGAAGATCCTGAAATT+AGG - Chr1:55288604-55288623 MsG0180003031.01.T01:CDS 35.0%
GAAGTTTAATTGTAGGGCTA+AGG - Chr1:55288884-55288903 MsG0180003031.01.T01:intron 35.0%
GAGGACCAAAATTGCAATTA+AGG - Chr1:55289887-55289906 MsG0180003031.01.T01:intron 35.0%
GCATTCTCATCAGAGATATA+CGG + Chr1:55288585-55288604 None:intergenic 35.0%
GGAAAATGCAGTCTAAATCA+GGG - Chr1:55290087-55290106 MsG0180003031.01.T01:CDS 35.0%
GGGATGTGATGAATTTGAAA+GGG - Chr1:55288667-55288686 MsG0180003031.01.T01:intron 35.0%
GTGATGAATTTGAAAGGGAA+AGG - Chr1:55288672-55288691 MsG0180003031.01.T01:intron 35.0%
GTTACAATTATCCGTATCCT+TGG - Chr1:55290912-55290931 MsG0180003031.01.T01:exon 35.0%
TAATTCTGTCACCAAGGATA+CGG + Chr1:55290926-55290945 None:intergenic 35.0%
TACCTAATGTGGTCAAATCA+AGG + Chr1:55290183-55290202 None:intergenic 35.0%
TAGATTGTGTTGCGGTATAT+AGG - Chr1:55289165-55289184 MsG0180003031.01.T01:intron 35.0%
TCGAATAAGTCAATCCAAAC+AGG + Chr1:55289192-55289211 None:intergenic 35.0%
! AAAGGTTTTGCAGAAGGTTA+AGG - Chr1:55288545-55288564 MsG0180003031.01.T01:exon 35.0%
! AACTATTTTACTCGTTCTCC+CGG + Chr1:55289418-55289437 None:intergenic 35.0%
! AAGGTTTTGCAGAAGGTTAA+GGG - Chr1:55288546-55288565 MsG0180003031.01.T01:exon 35.0%
! AGGGTTAGTGTTAAAGAAGA+AGG - Chr1:55288624-55288643 MsG0180003031.01.T01:CDS 35.0%
! CCGTATTTTGCCATGAAATT+GGG + Chr1:55288237-55288256 None:intergenic 35.0%
! CGCAATATTACAACCCTTTT+TGG + Chr1:55290048-55290067 None:intergenic 35.0%
! CTCTCTCTTGTTTATTACCA+TGG - Chr1:55290827-55290846 MsG0180003031.01.T01:CDS 35.0%
! GAAGGTTTTGCTGAAGAATT+CGG - Chr1:55288773-55288792 MsG0180003031.01.T01:CDS 35.0%
! GAGATTGTTGAAGAAGGTTT+TGG + Chr1:55288352-55288371 None:intergenic 35.0%
! TTTCTGCTGCTACTTATTTC+TGG - Chr1:55290795-55290814 MsG0180003031.01.T01:CDS 35.0%
! TTTTGCCATGAAATTGGGTT+TGG + Chr1:55288232-55288251 None:intergenic 35.0%
!! ATTCGATCTGTGTTTGGTTT+TGG - Chr1:55290575-55290594 MsG0180003031.01.T01:CDS 35.0%
!! ATTTTTGATGGGTCTGTTAC+AGG - Chr1:55288999-55289018 MsG0180003031.01.T01:intron 35.0%
!! GTCCTATTTTTCAAATGACG+TGG - Chr1:55289599-55289618 MsG0180003031.01.T01:intron 35.0%
!! GTCTATTTTACTAGTTCTCC+CGG + Chr1:55289384-55289403 None:intergenic 35.0%
!! GTTGATTTTGGAGAAGGTTA+GGG - Chr1:55288695-55288714 MsG0180003031.01.T01:intron 35.0%
!! TTTTTGATGGGTCTGTTACA+GGG - Chr1:55289000-55289019 MsG0180003031.01.T01:intron 35.0%
!!! GTCATCGATGATTTTGAGAT+TGG + Chr1:55288379-55288398 None:intergenic 35.0%
AAATCAGCGTTAACCTTACC+TGG - Chr1:55288496-55288515 MsG0180003031.01.T01:three_prime_UTR 40.0%
AATCAGCGTTAACCTTACCT+GGG - Chr1:55288497-55288516 MsG0180003031.01.T01:three_prime_UTR 40.0%
ACAATTGGTGTGGTTGTTTG+AGG + Chr1:55288186-55288205 None:intergenic 40.0%
AGAGATGGAGATTTGGAAGT+TGG - Chr1:55289060-55289079 MsG0180003031.01.T01:intron 40.0%
ATCAGCTGCATTTGACTGTA+TGG - Chr1:55290156-55290175 MsG0180003031.01.T01:CDS 40.0%
CGGAAAATGCAGTCTAAATC+AGG - Chr1:55290086-55290105 MsG0180003031.01.T01:CDS 40.0%
CTCTCAAGATCATCCTTAAC+CGG + Chr1:55288750-55288769 None:intergenic 40.0%
GATGGATGAGAATAGATGGA+AGG - Chr1:55288923-55288942 MsG0180003031.01.T01:intron 40.0%
GGAAACAGAAACAATTGGTG+TGG + Chr1:55288196-55288215 None:intergenic 40.0%
GGATGATCTTGAGAGTAAGA+AGG - Chr1:55288755-55288774 MsG0180003031.01.T01:CDS 40.0%
GGTGAAGAGATTGTTGAAGA+AGG + Chr1:55288358-55288377 None:intergenic 40.0%
GTAGGTGAGAATTGTGTTTG+AGG - Chr1:55290344-55290363 MsG0180003031.01.T01:CDS 40.0%
TATCTCTATGACTGCGATTG+AGG + Chr1:55290220-55290239 None:intergenic 40.0%
TGTTGTGGAGAATACAGAGA+GGG - Chr1:55290526-55290545 MsG0180003031.01.T01:CDS 40.0%
TTTGCTGAAGAATTCGGTTG+CGG - Chr1:55288779-55288798 MsG0180003031.01.T01:CDS 40.0%
TTTGGAGAAGGTTAGGGTTT+GGG - Chr1:55288701-55288720 MsG0180003031.01.T01:intron 40.0%
! ACGAATTTGGAGTTGGAAGA+AGG - Chr1:55289023-55289042 MsG0180003031.01.T01:intron 40.0%
! AGGATTAGTAAAGAGGTTGG+AGG - Chr1:55288966-55288985 MsG0180003031.01.T01:intron 40.0%
! CGAATTTGGAGTTGGAAGAA+GGG - Chr1:55289024-55289043 MsG0180003031.01.T01:intron 40.0%
! GACCTTGATTTGACCACATT+AGG - Chr1:55290178-55290197 MsG0180003031.01.T01:CDS 40.0%
! GCCGTATTTTGCCATGAAAT+TGG + Chr1:55288238-55288257 None:intergenic 40.0%
! GCTAGGATTAGTAAAGAGGT+TGG - Chr1:55288963-55288982 MsG0180003031.01.T01:intron 40.0%
! GGAAGTTGATTGTTCAGAGA+TGG - Chr1:55289045-55289064 MsG0180003031.01.T01:intron 40.0%
! GTTTTACGCAGAGTAATGCT+AGG - Chr1:55288946-55288965 MsG0180003031.01.T01:intron 40.0%
! TGAAGGAAAGGTTTTGCAGA+AGG - Chr1:55288539-55288558 MsG0180003031.01.T01:three_prime_UTR 40.0%
!! AAATAGACTCTGAGACTGAC+CGG - Chr1:55289396-55289415 MsG0180003031.01.T01:intron 40.0%
!! ATAAACACTCTGAGACTGAC+CGG - Chr1:55289362-55289381 MsG0180003031.01.T01:intron 40.0%
!! GAAAGGGAAAGGGTTGATTT+TGG - Chr1:55288683-55288702 MsG0180003031.01.T01:intron 40.0%
!! GAAAGGGTTGATTTTGGAGA+AGG - Chr1:55288689-55288708 MsG0180003031.01.T01:intron 40.0%
!! GGTTGATTTTGGAGAAGGTT+AGG - Chr1:55288694-55288713 MsG0180003031.01.T01:intron 40.0%
!! TAACGCTGATTTCGTAACCA+GGG + Chr1:55288488-55288507 None:intergenic 40.0%
!! TTAACGCTGATTTCGTAACC+AGG + Chr1:55288489-55288508 None:intergenic 40.0%
!! TTTTGGAGAAGGTTAGGGTT+TGG - Chr1:55288700-55288719 MsG0180003031.01.T01:intron 40.0%
!!! CCGAACAAGGTTTTGAACAA+AGG + Chr1:55290283-55290302 None:intergenic 40.0%
!!! GGGTTTGGTAGCGAATTTTA+AGG + Chr1:55288217-55288236 None:intergenic 40.0%
AAAGGAGGAGGAAGTTGTTC+CGG - Chr1:55288812-55288831 MsG0180003031.01.T01:intron 45.0%
AACACTAACCTGTCTTCCTC+AGG + Chr1:55290417-55290436 None:intergenic 45.0%
AGATTTGGAAGTTGGCCAGA+TGG - Chr1:55289068-55289087 MsG0180003031.01.T01:intron 45.0%
ATCGTAGAAGACAGACCAGA+CGG - Chr1:55288276-55288295 MsG0180003031.01.T01:three_prime_UTR 45.0%
ATTTGGGAATGCGACTGTTG+TGG - Chr1:55290511-55290530 MsG0180003031.01.T01:CDS 45.0%
CAAACACAGATCGAATCCTC+TGG + Chr1:55290571-55290590 None:intergenic 45.0%
CAGAGGATTCGATCTGTGTT+TGG - Chr1:55290569-55290588 MsG0180003031.01.T01:CDS 45.0%
CGCTACCAAACCCAATTTCA+TGG - Chr1:55288224-55288243 MsG0180003031.01.T01:three_prime_UTR 45.0%
CTCAATTCACGTTCCGAACA+AGG + Chr1:55290296-55290315 None:intergenic 45.0%
CTGTTGTGGAGAATACAGAG+AGG - Chr1:55290525-55290544 MsG0180003031.01.T01:CDS 45.0%
GTCTGTTACAGGGACGAATT+TGG - Chr1:55289010-55289029 MsG0180003031.01.T01:intron 45.0%
GTTGTGGAGAATACAGAGAG+GGG - Chr1:55290527-55290546 MsG0180003031.01.T01:CDS 45.0%
TTCATGGCAAAATACGGCGA+AGG - Chr1:55288240-55288259 MsG0180003031.01.T01:three_prime_UTR 45.0%
TTGTGGAGAATACAGAGAGG+GGG - Chr1:55290528-55290547 MsG0180003031.01.T01:CDS 45.0%
! ACCACTGATTGCATTCCATC+TGG + Chr1:55289086-55289105 None:intergenic 45.0%
! CAGGGATGATTTTACCCTTC+CGG + Chr1:55288470-55288489 None:intergenic 45.0%
! GTTGAGAGTATGTCGAAAGG+AGG - Chr1:55288723-55288742 MsG0180003031.01.T01:intron 45.0%
! TACAGGGACGAATTTGGAGT+TGG - Chr1:55289016-55289035 MsG0180003031.01.T01:intron 45.0%
! TGGGTTGAGAGTATGTCGAA+AGG - Chr1:55288720-55288739 MsG0180003031.01.T01:intron 45.0%
!! AATAGACTCTGAGACTGACC+GGG - Chr1:55289397-55289416 MsG0180003031.01.T01:intron 45.0%
!! TAAACACTCTGAGACTGACC+GGG - Chr1:55289363-55289382 MsG0180003031.01.T01:intron 45.0%
AACACACACTGATGTGCCTG+AGG - Chr1:55290398-55290417 MsG0180003031.01.T01:CDS 50.0%
ACCCTTCCGGACATTAACGT+AGG + Chr1:55288457-55288476 None:intergenic 50.0%
ACGACCGTAACTCCAGATTC+AGG + Chr1:55290372-55290391 None:intergenic 50.0%
ACGGAACAAACGTCCACAAC+TGG - Chr1:55288295-55288314 MsG0180003031.01.T01:three_prime_UTR 50.0%
AGCCTACGTTAATGTCCGGA+AGG - Chr1:55288452-55288471 MsG0180003031.01.T01:three_prime_UTR 50.0%
AGCGTTAACCTTACCTGGGA+AGG - Chr1:55288501-55288520 MsG0180003031.01.T01:three_prime_UTR 50.0%
CAACGAGCAAGGATCATCCA+TGG + Chr1:55290847-55290866 None:intergenic 50.0%
CGAAGGAGAAGGGGAAGAAA+GGG - Chr1:55288838-55288857 MsG0180003031.01.T01:intron 50.0%
CGGAAGGGTAAAATCATCCC+TGG - Chr1:55288468-55288487 MsG0180003031.01.T01:three_prime_UTR 50.0%
GACATTAACGTAGGCTTCGC+CGG + Chr1:55288448-55288467 None:intergenic 50.0%
GAGTATGTCGAAAGGAGGAC+CGG - Chr1:55288728-55288747 MsG0180003031.01.T01:intron 50.0%
GCCAGATGGAATGCAATCAG+TGG - Chr1:55289082-55289101 MsG0180003031.01.T01:intron 50.0%
GCCTACGTTAATGTCCGGAA+GGG - Chr1:55288453-55288472 MsG0180003031.01.T01:three_prime_UTR 50.0%
GCGAAGCCTACGTTAATGTC+CGG - Chr1:55288448-55288467 MsG0180003031.01.T01:three_prime_UTR 50.0%
GGAGGGATCTCATATTCCAG+AGG - Chr1:55290552-55290571 MsG0180003031.01.T01:CDS 50.0%
GGTGGAGAAGAAAAAGGAGG+AGG - Chr1:55288800-55288819 MsG0180003031.01.T01:CDS 50.0%
GGTTGCGGTGGAGAAGAAAA+AGG - Chr1:55288794-55288813 MsG0180003031.01.T01:CDS 50.0%
GTGTTTGAGGAGCCTGAATC+TGG - Chr1:55290357-55290376 MsG0180003031.01.T01:CDS 50.0%
TGCGGTATATAGGGCCTGTT+TGG - Chr1:55289175-55289194 MsG0180003031.01.T01:intron 50.0%
TGCGGTGGAGAAGAAAAAGG+AGG - Chr1:55288797-55288816 MsG0180003031.01.T01:CDS 50.0%
TTGTGGACGTTTGTTCCGTC+TGG + Chr1:55288294-55288313 None:intergenic 50.0%
! ATCGCGTGACTCTGAAGGAA+AGG - Chr1:55288527-55288546 MsG0180003031.01.T01:three_prime_UTR 50.0%
! GGAGCCTGAATCTGGAGTTA+CGG - Chr1:55290365-55290384 MsG0180003031.01.T01:CDS 50.0%
ACGGCGAAGGAGACAAACGT+TGG - Chr1:55288253-55288272 MsG0180003031.01.T01:three_prime_UTR 55.0%
AGAATACAGAGAGGGGGTGG+AGG - Chr1:55290534-55290553 MsG0180003031.01.T01:CDS 55.0%
CAAACGTCCACAACTGGCAC+TGG - Chr1:55288301-55288320 MsG0180003031.01.T01:three_prime_UTR 55.0%
CTGATGTGCCTGAGGAAGAC+AGG - Chr1:55290406-55290425 MsG0180003031.01.T01:CDS 55.0%
GAATACAGAGAGGGGGTGGA+GGG - Chr1:55290535-55290554 MsG0180003031.01.T01:CDS 55.0%
GCGAAGGAGAAGGGGAAGAA+AGG - Chr1:55288837-55288856 MsG0180003031.01.T01:intron 55.0%
GCGATTCACCTTCCCAGGTA+AGG + Chr1:55288512-55288531 None:intergenic 55.0%
GCTGAAGAATTCGGTTGCGG+TGG - Chr1:55288782-55288801 MsG0180003031.01.T01:CDS 55.0%
GGAAGTTGTTCCGGTTGCGA+AGG - Chr1:55288821-55288840 MsG0180003031.01.T01:intron 55.0%
GGTGAATCGCGTGACTCTGA+AGG - Chr1:55288522-55288541 MsG0180003031.01.T01:three_prime_UTR 55.0%
GTCGAAAGGAGGACCGGTTA+AGG - Chr1:55288734-55288753 MsG0180003031.01.T01:intron 55.0%
GTTCCGGTTGCGAAGGAGAA+GGG - Chr1:55288828-55288847 MsG0180003031.01.T01:intron 55.0%
TGGAGAATACAGAGAGGGGG+TGG - Chr1:55290531-55290550 MsG0180003031.01.T01:CDS 55.0%
TGTTCCGGTTGCGAAGGAGA+AGG - Chr1:55288827-55288846 MsG0180003031.01.T01:intron 55.0%
TTCCCCTTCTCCTTCGCAAC+CGG + Chr1:55288834-55288853 None:intergenic 55.0%
TTCCGGTTGCGAAGGAGAAG+GGG - Chr1:55288829-55288848 MsG0180003031.01.T01:intron 55.0%
TTTCGGACCAGTGCCAGTTG+TGG + Chr1:55288311-55288330 None:intergenic 55.0%
GTCACGCGATTCACCTTCCC+AGG + Chr1:55288517-55288536 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 55288154 55291013 55288154 ID=MsG0180003031.01;Name=MsG0180003031.01
Chr1 mRNA 55288154 55291013 55288154 ID=MsG0180003031.01.T01;Parent=MsG0180003031.01;Name=MsG0180003031.01.T01;_AED=0.26;_eAED=0.26;_QI=89|1|1|1|1|1|3|409|344
Chr1 exon 55288154 55288656 55288154 ID=MsG0180003031.01.T01:exon:22428;Parent=MsG0180003031.01.T01
Chr1 exon 55288740 55288819 55288740 ID=MsG0180003031.01.T01:exon:22427;Parent=MsG0180003031.01.T01
Chr1 exon 55290064 55291013 55290064 ID=MsG0180003031.01.T01:exon:22426;Parent=MsG0180003031.01.T01
Chr1 five_prime_UTR 55290925 55291013 55290925 ID=MsG0180003031.01.T01:five_prime_utr;Parent=MsG0180003031.01.T01
Chr1 CDS 55290064 55290924 55290064 ID=MsG0180003031.01.T01:cds;Parent=MsG0180003031.01.T01
Chr1 CDS 55288740 55288819 55288740 ID=MsG0180003031.01.T01:cds;Parent=MsG0180003031.01.T01
Chr1 CDS 55288563 55288656 55288563 ID=MsG0180003031.01.T01:cds;Parent=MsG0180003031.01.T01
Chr1 three_prime_UTR 55288154 55288562 55288154 ID=MsG0180003031.01.T01:three_prime_utr;Parent=MsG0180003031.01.T01
Gene Sequence

>MsG0180003031.01.T01

ATGGCAAAATACGGCGAAGGAGACAAACGTTGGATCGTAGAAGACAGACCAGACGGAACAAACGTCCACAACTGGCACTGGTCCGAAACCAATTGTTTAGAATGGTCCAAAACCTTCTTCAACAATCTCTTCACCAATCTCAAAATCATCGATGACCATGAAAATAATCTACAAATCACTGTCAAAAAAGTCGAAAAGCTTTCCGGCGAAGCCTACGTTAATGTCCGGAAGGGTAAAATCATCCCTGGTTACGAAATCAGCGTTAACCTTACCTGGGAAGGTGAATCGCGTGACTCTGAAGGAAAGGTTTTGCAGAAGGTTAAGGGAAGTGTTGAAATTCCGTATATCTCTGATGAGAATGCTGATGAAGATCCTGAAATTAGGGTTAGTGTTAAAGAAGAAGGAAAAATTGCGAATAGTTTGAGGGATGTGATGAATTTGAAAGGGAAAGGGTTGATTTTGGAGAAGGTTAGGGTTTGGGTTGAGAGTATGTCGAAAGGAGGACCGGTTAAGGATGATCTTGAGAGTAAGAAGGTTTTGCTGAAGAATTCGGTTGCGGTGGAGAAGAAAAAGGAGGAGGAAGTTGTTCCGGTTGCGAAGGAGAAGGGGAAGAAAGGGTGTAAAGTGATTAGTTTGAATGAGAAGTTTAATTGTAGGGCTAAGGATTTGTTTGAGATTATGATGGATGAGAATAGATGGAAGGGTTTTACGCAGAGTAATGCTAGGATTAGTAAAGAGGTTGGAGGTGAGTTTAGTATTTTTGATGGGTCTGTTACAGGGACGAATTTGGAGTTGGAAGAAGGGAAGTTGATTGTTCAGAGATGGAGATTTGGAAGTTGGCCAGATGGAATGCAATCAGTGGTGAGAATTGTGTTTGAGGAGCCTGAATCTGGAGTTACGGTCGTGAAGCTAACACACACTGATGTGCCTGAGGAAGACAGATTTGGGAATGCGACTGTTGTGGAGAATACAGAGAGGGGGTGGAGGGATCTCATATTCCAGAGGATTCGATCTGTGTTTGGTTTTGGAATGTGA

Protein sequence

>MsG0180003031.01.T01

MAKYGEGDKRWIVEDRPDGTNVHNWHWSETNCLEWSKTFFNNLFTNLKIIDDHENNLQITVKKVEKLSGEAYVNVRKGKIIPGYEISVNLTWEGESRDSEGKVLQKVKGSVEIPYISDENADEDPEIRVSVKEEGKIANSLRDVMNLKGKGLILEKVRVWVESMSKGGPVKDDLESKKVLLKNSVAVEKKKEEEVVPVAKEKGKKGCKVISLNEKFNCRAKDLFEIMMDENRWKGFTQSNARISKEVGGEFSIFDGSVTGTNLELEEGKLIVQRWRFGSWPDGMQSVVRIVFEEPESGVTVVKLTHTDVPEEDRFGNATVVENTERGWRDLIFQRIRSVFGFGM*