AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028988.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028988.01.T01 MTR_5g079610 96.698 212 6 1 1 212 1 211 1.51e-147 409
MsG0580028988.01.T01 MTR_3g067730 61.712 222 67 6 1 210 1 216 2.15e-80 239
MsG0580028988.01.T01 MTR_1g030740 53.409 176 73 3 1 175 1 168 8.75e-57 179
MsG0580028988.01.T01 MTR_4g085100 50.847 177 74 4 1 173 1 168 5.60e-51 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028988.01.T01 AT1G66480 56.497 177 68 6 1 170 1 175 2.50e-59 186
MsG0580028988.01.T01 AT5G37840 51.196 209 85 5 1 198 1 203 1.55e-57 181
MsG0580028988.01.T01 AT2G01340 52.907 172 69 5 1 171 1 161 2.09e-52 168
MsG0580028988.01.T01 AT1G71015 50.588 170 75 5 1 170 1 161 3.44e-39 134
MsG0580028988.01.T01 AT1G71015 50.588 170 75 5 1 170 1 161 3.44e-39 134

Find 65 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATTGGTTTCTCTATT+AGG 0.126642 5:+89976381 None:intergenic
GAAACCACCATCATCAAATT+TGG 0.171380 5:-89976003 MsG0580028988.01.T01:CDS
CCTCAATAGTATTTCCTCTT+AGG 0.200768 5:-89973803 MsG0580028988.01.T01:exon
GAAGATTATGAGTTTGTATA+TGG 0.218361 5:-89975874 MsG0580028988.01.T01:CDS
TCATCTTGGGGCTCAATCTT+AGG 0.230505 5:+89976140 None:intergenic
CCACTAGAACGTACCCTTCT+AGG 0.234144 5:+89976104 None:intergenic
CCTATGGTGTTTCCCATGAT+TGG 0.278242 5:+89976368 None:intergenic
CATCAAATTTGGGCTTTGAT+AGG 0.291266 5:-89975992 MsG0580028988.01.T01:CDS
GGCTTTGATAGGCCCTTTGA+TGG 0.319942 5:-89975981 MsG0580028988.01.T01:CDS
GAGTTCTTGATTTGGCTCTA+AGG 0.329180 5:+89976196 None:intergenic
CAGTAAAACACTTCGGGCTT+AGG 0.335787 5:-89976226 MsG0580028988.01.T01:CDS
TCTTGTCTTGTGTTTCTTTG+TGG 0.357395 5:+89976411 None:intergenic
GCTAAGATTATGAAGATAGA+TGG 0.365523 5:-89976332 MsG0580028988.01.T01:CDS
CTCAAGCAGTAAAACACTTC+GGG 0.366167 5:-89976232 MsG0580028988.01.T01:CDS
TTGGGCTTGAGTTCTTGATT+TGG 0.367392 5:+89976188 None:intergenic
GGGTACGTTCTAGTGGAATA+AGG 0.370431 5:-89976097 MsG0580028988.01.T01:CDS
TACATACCCCACGAGGCTTT+CGG 0.379415 5:+89975802 None:intergenic
ACAACTTCGTTTGATGTTGT+TGG 0.390472 5:+89976287 None:intergenic
AAACCACCATCATCAAATTT+GGG 0.402951 5:-89976002 MsG0580028988.01.T01:CDS
AGTTCTTGATTTGGCTCTAA+GGG 0.425177 5:+89976197 None:intergenic
GACTTTCTTCAATCTCCATT+GGG 0.425939 5:+89973840 None:intergenic
GGACTTTCTTCAATCTCCAT+TGG 0.427544 5:+89973839 None:intergenic
AGCCCAGTTGGAAAAGTTGA+TGG 0.431835 5:-89975928 MsG0580028988.01.T01:CDS
CAATCTTAGGTAAATCTACT+AGG 0.436236 5:+89976153 None:intergenic
TATTGAGGAGCTGCTTCAAC+AGG 0.453324 5:+89973818 None:intergenic
AGTAAAACACTTCGGGCTTA+GGG 0.459315 5:-89976225 MsG0580028988.01.T01:CDS
TTGATGGAAGAGAGTAATGA+TGG 0.466806 5:-89975912 MsG0580028988.01.T01:CDS
CACTAACGAAATATCTGAAA+CGG 0.473609 5:+89976025 None:intergenic
CCTAATAGAGAAACCAATCA+TGG 0.475579 5:-89976381 MsG0580028988.01.T01:exon
TAATGATGGGTCTGAGGTGG+CGG 0.497077 5:-89975898 MsG0580028988.01.T01:CDS
CACCCTCATGGACCCATCAA+AGG 0.503885 5:+89975968 None:intergenic
AATAAGGAACGTGGATGCTA+AGG 0.505115 5:-89976081 MsG0580028988.01.T01:CDS
AAGATTATGAGTTTGTATAT+GGG 0.514266 5:-89975873 MsG0580028988.01.T01:CDS
AGAATCTAAGAGAACATGGT+TGG 0.514582 5:+89976253 None:intergenic
AAGCCTCATCTTCACCCTCA+TGG 0.515255 5:+89975956 None:intergenic
ATGAGTTTGTATATGGGTAG+CGG 0.520469 5:-89975867 MsG0580028988.01.T01:CDS
ACCCTCATGGACCCATCAAA+GGG 0.521258 5:+89975969 None:intergenic
GCTTTGATAGGCCCTTTGAT+GGG 0.524979 5:-89975980 MsG0580028988.01.T01:CDS
CCTAGAAGGGTACGTTCTAG+TGG 0.534238 5:-89976104 MsG0580028988.01.T01:CDS
GAATCTAAGAGAACATGGTT+GGG 0.536739 5:+89976254 None:intergenic
AAGCCCAAATTTGATGATGG+TGG 0.537750 5:+89975999 None:intergenic
GGCTAAACCGAAAGCCTCGT+GGG 0.541410 5:-89975809 MsG0580028988.01.T01:CDS
CCTAAGAGGAAATACTATTG+AGG 0.556467 5:+89973803 None:intergenic
GAGGCTTCCTAAAGCCCAGT+TGG 0.560896 5:-89975940 MsG0580028988.01.T01:CDS
TCAAAGCCCAAATTTGATGA+TGG 0.561669 5:+89975996 None:intergenic
TCTCAAGCAGTAAAACACTT+CGG 0.563644 5:-89976233 MsG0580028988.01.T01:CDS
CTTGAGAATCTAAGAGAACA+TGG 0.563823 5:+89976249 None:intergenic
CCAATCATGGGAAACACCAT+AGG 0.564589 5:-89976368 MsG0580028988.01.T01:exon
ATAAGGAACGTGGATGCTAA+GGG 0.588791 5:-89976080 MsG0580028988.01.T01:CDS
GGCCCTTTGATGGGTCCATG+AGG 0.590646 5:-89975971 MsG0580028988.01.T01:CDS
GGTCCATGAGGGTGAAGATG+AGG 0.594224 5:-89975959 MsG0580028988.01.T01:CDS
CTAATAGAGAAACCAATCAT+GGG 0.606619 5:-89976380 MsG0580028988.01.T01:exon
GGGTAGCGGTGGTGATGCGG+CGG 0.614054 5:-89975853 MsG0580028988.01.T01:CDS
GCCCTTTGATGGGTCCATGA+GGG 0.621686 5:-89975970 MsG0580028988.01.T01:CDS
CGGCTAAACCGAAAGCCTCG+TGG 0.624658 5:-89975810 MsG0580028988.01.T01:CDS
GGTGATGCGGCGGAGCATGA+CGG 0.634118 5:-89975843 MsG0580028988.01.T01:CDS
TATGGGTAGCGGTGGTGATG+CGG 0.636003 5:-89975856 MsG0580028988.01.T01:CDS
GAGTAATGATGGGTCTGAGG+TGG 0.637797 5:-89975901 MsG0580028988.01.T01:CDS
AGAGAGTAATGATGGGTCTG+AGG 0.645019 5:-89975904 MsG0580028988.01.T01:CDS
TGATGGAAGAGAGTAATGAT+GGG 0.646933 5:-89975911 MsG0580028988.01.T01:CDS
TTCTAGTGGAATAAGGAACG+TGG 0.683798 5:-89976090 MsG0580028988.01.T01:CDS
GCTAAACCGAAAGCCTCGTG+GGG 0.689080 5:-89975808 MsG0580028988.01.T01:intron
TGTACATTCTAACCATCATG+CGG 0.714217 5:+89973764 None:intergenic
AGTTTGTATATGGGTAGCGG+TGG 0.722789 5:-89975864 MsG0580028988.01.T01:CDS
ATACTTATACATACCCCACG+AGG 0.764323 5:+89975795 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTATTACAAAATATTTAA+AGG + Chr5:89974810-89974829 None:intergenic 10.0%
!!! AAAGAAAATAAATAAACTTT+TGG - Chr5:89974613-89974632 MsG0580028988.01.T01:intron 10.0%
!!! AATAAAACTTTTTTTTTTTG+AGG - Chr5:89975819-89975838 MsG0580028988.01.T01:CDS 10.0%
!!! ATAAAACTTTTTTTTTTTGA+GGG - Chr5:89975820-89975839 MsG0580028988.01.T01:CDS 10.0%
!! AACTATTCACTATATATTTA+AGG + Chr5:89975411-89975430 None:intergenic 15.0%
!! ACTATTCACTATATATTTAA+GGG + Chr5:89975410-89975429 None:intergenic 15.0%
!! TAAATCAAATGAATGAAAAT+CGG + Chr5:89974875-89974894 None:intergenic 15.0%
!!! AACTCAATTACTTTTTTTTA+GGG - Chr5:89975193-89975212 MsG0580028988.01.T01:intron 15.0%
!!! AATTCATTAACATAATTTTG+TGG + Chr5:89976189-89976208 None:intergenic 15.0%
!!! ATTTTACTTGCTTAAAAATT+AGG + Chr5:89975606-89975625 None:intergenic 15.0%
!!! TTTTGTAATAGTTTCTTTTA+TGG - Chr5:89974817-89974836 MsG0580028988.01.T01:intron 15.0%
!!! TTTTGTTGTTATTATTATCT+TGG - Chr5:89974339-89974358 MsG0580028988.01.T01:intron 15.0%
!! AAATCAAATGAATGAAAATC+GGG + Chr5:89974874-89974893 None:intergenic 20.0%
!! AAATTTCGCTACATTAAATT+TGG - Chr5:89975459-89975478 MsG0580028988.01.T01:intron 20.0%
!! AAGATTATGAGTTTGTATAT+GGG - Chr5:89974220-89974239 MsG0580028988.01.T01:intron 20.0%
!! AATAACTTAGTACCTAAAAT+AGG + Chr5:89976163-89976182 None:intergenic 20.0%
!! AATACGAGGAAAAAAAAATA+AGG + Chr5:89974642-89974661 None:intergenic 20.0%
!! CTAAAAAAAAAAAACCTAAG+AGG + Chr5:89976307-89976326 None:intergenic 20.0%
!!! AAACTTATTAAAGGAGATTT+TGG - Chr5:89975855-89975874 MsG0580028988.01.T01:CDS 20.0%
!!! AAGACTTTGGATTTTAATAA+AGG - Chr5:89975356-89975375 MsG0580028988.01.T01:intron 20.0%
!!! AATAACATGTAGATTTTGTT+TGG - Chr5:89975945-89975964 MsG0580028988.01.T01:CDS 20.0%
!!! ACTCAATTACTTTTTTTTAG+GGG - Chr5:89975194-89975213 MsG0580028988.01.T01:intron 20.0%
!!! CATATATTGATTGCATTTTA+AGG + Chr5:89975530-89975549 None:intergenic 20.0%
!!! GAACTCAATTACTTTTTTTT+AGG - Chr5:89975192-89975211 MsG0580028988.01.T01:intron 20.0%
! ATACTAACATTCTTTCAAAG+TGG - Chr5:89974445-89974464 MsG0580028988.01.T01:intron 25.0%
! GAAGATTATGAGTTTGTATA+TGG - Chr5:89974219-89974238 MsG0580028988.01.T01:intron 25.0%
! GGCACAATAAAACTTATTAA+AGG - Chr5:89975846-89975865 MsG0580028988.01.T01:CDS 25.0%
! TAATTAAAAAATCGGCTACA+TGG - Chr5:89974721-89974740 MsG0580028988.01.T01:intron 25.0%
! TACTTCAAATAATGTCAAAC+AGG - Chr5:89975635-89975654 MsG0580028988.01.T01:intron 25.0%
! TTCATGTTAGAATTCGAATT+TGG - Chr5:89975128-89975147 MsG0580028988.01.T01:intron 25.0%
! TTTAATGTATAGTTTCTTCG+TGG - Chr5:89975573-89975592 MsG0580028988.01.T01:intron 25.0%
!! ACTAGGAAGTAAATTTTCTT+GGG + Chr5:89973926-89973945 None:intergenic 25.0%
!! ATTCGATAGTTTCCTATTTT+AGG - Chr5:89976148-89976167 MsG0580028988.01.T01:CDS 25.0%
!! ATTTTTGTGTTTGGTTGATT+GGG + Chr5:89973656-89973675 None:intergenic 25.0%
!! GTTTCTTTTATGGTTTTTCT+AGG - Chr5:89974827-89974846 MsG0580028988.01.T01:intron 25.0%
!! TACTAGGAAGTAAATTTTCT+TGG + Chr5:89973927-89973946 None:intergenic 25.0%
!!! ACTTTTTTTTTTTGAGGGAA+TGG - Chr5:89975825-89975844 MsG0580028988.01.T01:CDS 25.0%
!!! TACTTAATTTTTGGTGTACT+CGG + Chr5:89974703-89974722 None:intergenic 25.0%
!!! TATTTTTGTGTTTGGTTGAT+TGG + Chr5:89973657-89973676 None:intergenic 25.0%
!!! TGGTTTTGTATTTTTGTGTT+TGG + Chr5:89973665-89973684 None:intergenic 25.0%
AAACAATTTAAGTGCGTGTT+TGG + Chr5:89976094-89976113 None:intergenic 30.0%
AAACCACCATCATCAAATTT+GGG - Chr5:89974091-89974110 MsG0580028988.01.T01:intron 30.0%
ATAGAAGCTTAACAAGACTT+TGG - Chr5:89975343-89975362 MsG0580028988.01.T01:intron 30.0%
CAATCTTAGGTAAATCTACT+AGG + Chr5:89973943-89973962 None:intergenic 30.0%
CACTAACGAAATATCTGAAA+CGG + Chr5:89974071-89974090 None:intergenic 30.0%
CATATAAATGTCGTAGTAAG+AGG + Chr5:89974900-89974919 None:intergenic 30.0%
CTAATAGAGAAACCAATCAT+GGG - Chr5:89973713-89973732 MsG0580028988.01.T01:three_prime_UTR 30.0%
GCAATCAATATATGAAGTAG+AGG - Chr5:89975536-89975555 MsG0580028988.01.T01:intron 30.0%
GCTAAGATTATGAAGATAGA+TGG - Chr5:89973761-89973780 MsG0580028988.01.T01:three_prime_UTR 30.0%
GTAACTTCTGCAAAAAATCA+CGG - Chr5:89976033-89976052 MsG0580028988.01.T01:CDS 30.0%
GTGATAAAACTAGACATGAT+AGG + Chr5:89975022-89975041 None:intergenic 30.0%
TAGTGTTTGTGTAAGAATCA+CGG + Chr5:89976066-89976085 None:intergenic 30.0%
TCAAATACCCAATTTAGCAA+GGG - Chr5:89975883-89975902 MsG0580028988.01.T01:CDS 30.0%
TTCAAATACCCAATTTAGCA+AGG - Chr5:89975882-89975901 MsG0580028988.01.T01:CDS 30.0%
! CTATGTGAAAAGGATTTTGA+AGG - Chr5:89975658-89975677 MsG0580028988.01.T01:intron 30.0%
! GAAAACAAGCTTATGTGTTT+TGG + Chr5:89974939-89974958 None:intergenic 30.0%
! TGTTGGAGTTTTTACTTTGA+AGG + Chr5:89973792-89973811 None:intergenic 30.0%
!! TCTACATGTTATTTCTTCTC+TGG + Chr5:89975938-89975957 None:intergenic 30.0%
!!! ACTTAATTTTTGGTGTACTC+GGG + Chr5:89974702-89974721 None:intergenic 30.0%
!!! AGCTTTTTTGCTTTTTCCTA+TGG + Chr5:89973744-89973763 None:intergenic 30.0%
!!! TAACGACGTTTTTTCATCTT+GGG + Chr5:89973969-89973988 None:intergenic 30.0%
!!! TTTTTTTTAGTACCGCATGA+TGG - Chr5:89976317-89976336 MsG0580028988.01.T01:CDS 30.0%
AAAAAACGTCGTTACCTAGA+AGG - Chr5:89973975-89973994 MsG0580028988.01.T01:intron 35.0%
AAAAACGTCGTTACCTAGAA+GGG - Chr5:89973976-89973995 MsG0580028988.01.T01:intron 35.0%
AATACTCGTCGTTTACTTGT+TGG - Chr5:89975788-89975807 MsG0580028988.01.T01:intron 35.0%
ACAACTTCGTTTGATGTTGT+TGG + Chr5:89973809-89973828 None:intergenic 35.0%
AGAATCTAAGAGAACATGGT+TGG + Chr5:89973843-89973862 None:intergenic 35.0%
ATGAGTTTGTATATGGGTAG+CGG - Chr5:89974226-89974245 MsG0580028988.01.T01:intron 35.0%
CAAATACCCAATTTAGCAAG+GGG - Chr5:89975884-89975903 MsG0580028988.01.T01:CDS 35.0%
CCTAAGAGGAAATACTATTG+AGG + Chr5:89976293-89976312 None:intergenic 35.0%
CCTAATAGAGAAACCAATCA+TGG - Chr5:89973712-89973731 MsG0580028988.01.T01:three_prime_UTR 35.0%
CCTCAATAGTATTTCCTCTT+AGG - Chr5:89976290-89976309 MsG0580028988.01.T01:CDS 35.0%
CTTGAGAATCTAAGAGAACA+TGG + Chr5:89973847-89973866 None:intergenic 35.0%
GAAACCACCATCATCAAATT+TGG - Chr5:89974090-89974109 MsG0580028988.01.T01:intron 35.0%
GAATCTAAGAGAACATGGTT+GGG + Chr5:89973842-89973861 None:intergenic 35.0%
GACTTTCTTCAATCTCCATT+GGG + Chr5:89976256-89976275 None:intergenic 35.0%
TATCTATGCTACGCTAAACA+TGG - Chr5:89975061-89975080 MsG0580028988.01.T01:intron 35.0%
TCAAAGCCCAAATTTGATGA+TGG + Chr5:89974100-89974119 None:intergenic 35.0%
TCTCAAGCAGTAAAACACTT+CGG - Chr5:89973860-89973879 MsG0580028988.01.T01:CDS 35.0%
TCTTGTCTTGTGTTTCTTTG+TGG + Chr5:89973685-89973704 None:intergenic 35.0%
TGATGGAAGAGAGTAATGAT+GGG - Chr5:89974182-89974201 MsG0580028988.01.T01:intron 35.0%
TGTACATTCTAACCATCATG+CGG + Chr5:89976332-89976351 None:intergenic 35.0%
TGTTTAGCGTAGCATAGATA+AGG + Chr5:89975061-89975080 None:intergenic 35.0%
TGTTTGGTATCACATTGAGT+AGG - Chr5:89975961-89975980 MsG0580028988.01.T01:CDS 35.0%
TTGAAATCCGCAACAAGAAA+AGG + Chr5:89974547-89974566 None:intergenic 35.0%
TTGATGGAAGAGAGTAATGA+TGG - Chr5:89974181-89974200 MsG0580028988.01.T01:intron 35.0%
! ATTTTGCCCCTTGCTAAATT+GGG + Chr5:89975893-89975912 None:intergenic 35.0%
! CATCAAATTTGGGCTTTGAT+AGG - Chr5:89974101-89974120 MsG0580028988.01.T01:intron 35.0%
! TATTTTGCCCCTTGCTAAAT+TGG + Chr5:89975894-89975913 None:intergenic 35.0%
! TTCCATCAACTTTTCCAACT+GGG + Chr5:89974170-89974189 None:intergenic 35.0%
!! AGTTCTTGATTTGGCTCTAA+GGG + Chr5:89973899-89973918 None:intergenic 35.0%
!! CCATGATTGGTTTCTCTATT+AGG + Chr5:89973715-89973734 None:intergenic 35.0%
!!! AACGACGTTTTTTCATCTTG+GGG + Chr5:89973968-89973987 None:intergenic 35.0%
!!! GTAACGACGTTTTTTCATCT+TGG + Chr5:89973970-89973989 None:intergenic 35.0%
!!! TTTTTTTCCTCGTATTCTCG+TGG - Chr5:89974646-89974665 MsG0580028988.01.T01:intron 35.0%
AACTGCAAGTTGTTCTCTAG+CGG + Chr5:89975701-89975720 None:intergenic 40.0%
AATAAGGAACGTGGATGCTA+AGG - Chr5:89974012-89974031 MsG0580028988.01.T01:intron 40.0%
AATCGGGTCAAAAGAAGAAG+AGG + Chr5:89974858-89974877 None:intergenic 40.0%
AGTAAAACACTTCGGGCTTA+GGG - Chr5:89973868-89973887 MsG0580028988.01.T01:intron 40.0%
ATAAGGAACGTGGATGCTAA+GGG - Chr5:89974013-89974032 MsG0580028988.01.T01:intron 40.0%
ATACTTATACATACCCCACG+AGG + Chr5:89974301-89974320 None:intergenic 40.0%
CATAGATAAGGATGTTGCGT+TGG + Chr5:89975049-89975068 None:intergenic 40.0%
CTCAAGCAGTAAAACACTTC+GGG - Chr5:89973861-89973880 MsG0580028988.01.T01:intron 40.0%
GGACTTTCTTCAATCTCCAT+TGG + Chr5:89976257-89976276 None:intergenic 40.0%
GTCAAACAGGCTATGTGAAA+AGG - Chr5:89975648-89975667 MsG0580028988.01.T01:intron 40.0%
TTCGTTGTGGCGTTTCATAA+TGG - Chr5:89974476-89974495 MsG0580028988.01.T01:intron 40.0%
TTCTAGTGGAATAAGGAACG+TGG - Chr5:89974003-89974022 MsG0580028988.01.T01:intron 40.0%
TTGGGCTTGAGTTCTTGATT+TGG + Chr5:89973908-89973927 None:intergenic 40.0%
! AACTTTTCCAACTGGGCTTT+AGG + Chr5:89974163-89974182 None:intergenic 40.0%
! CTTCCATCAACTTTTCCAAC+TGG + Chr5:89974171-89974190 None:intergenic 40.0%
! TTGTTCTCTAGCGGTTTGTT+AGG + Chr5:89975692-89975711 None:intergenic 40.0%
!! AAGCCCAAATTTGATGATGG+TGG + Chr5:89974097-89974116 None:intergenic 40.0%
!! GAGTTCTTGATTTGGCTCTA+AGG + Chr5:89973900-89973919 None:intergenic 40.0%
AGCCCAGTTGGAAAAGTTGA+TGG - Chr5:89974165-89974184 MsG0580028988.01.T01:intron 45.0%
AGTGGCTTGAAGTTTCGTTG+TGG - Chr5:89974463-89974482 MsG0580028988.01.T01:intron 45.0%
ATTCTCGTGGCATTTGGCAA+AGG - Chr5:89974659-89974678 MsG0580028988.01.T01:intron 45.0%
CAGTAAAACACTTCGGGCTT+AGG - Chr5:89973867-89973886 MsG0580028988.01.T01:intron 45.0%
CCAATCATGGGAAACACCAT+AGG - Chr5:89973725-89973744 MsG0580028988.01.T01:three_prime_UTR 45.0%
CCTATGGTGTTTCCCATGAT+TGG + Chr5:89973728-89973747 None:intergenic 45.0%
GACTTGCGTGAAATTGCATG+TGG - Chr5:89974506-89974525 MsG0580028988.01.T01:intron 45.0%
GCTTTGATAGGCCCTTTGAT+GGG - Chr5:89974113-89974132 MsG0580028988.01.T01:intron 45.0%
GGGTACGTTCTAGTGGAATA+AGG - Chr5:89973996-89974015 MsG0580028988.01.T01:intron 45.0%
TATTGAGGAGCTGCTTCAAC+AGG + Chr5:89976278-89976297 None:intergenic 45.0%
TCATCTTGGGGCTCAATCTT+AGG + Chr5:89973956-89973975 None:intergenic 45.0%
TGCATGTGGTTGCAAAGACA+GGG - Chr5:89974520-89974539 MsG0580028988.01.T01:intron 45.0%
TTGCATGTGGTTGCAAAGAC+AGG - Chr5:89974519-89974538 MsG0580028988.01.T01:intron 45.0%
! ACAGGGTCCTTTTCTTGTTG+CGG - Chr5:89974537-89974556 MsG0580028988.01.T01:intron 45.0%
! AGCATGACGGTGATGTTTTG+CGG - Chr5:89974263-89974282 MsG0580028988.01.T01:intron 45.0%
! AGTTTGTATATGGGTAGCGG+TGG - Chr5:89974229-89974248 MsG0580028988.01.T01:intron 45.0%
! TCGTCGTTTACTTGTTGGTC+TGG - Chr5:89975793-89975812 MsG0580028988.01.T01:intron 45.0%
! TTTGGTGTACTCGGGATGTA+GGG + Chr5:89974694-89974713 None:intergenic 45.0%
!! ACGAGTGAGTTTTAGCCCAA+TGG - Chr5:89976238-89976257 MsG0580028988.01.T01:CDS 45.0%
!! AGAGAGTAATGATGGGTCTG+AGG - Chr5:89974189-89974208 MsG0580028988.01.T01:intron 45.0%
!! TTTTGGTGTACTCGGGATGT+AGG + Chr5:89974695-89974714 None:intergenic 45.0%
!! AAAAATAAAATATTATTGAA+GGG - Chr5:89975085-89975104 MsG0580028988.01.T01:intron 5.0%
!! AAATTAAGTAATTAAAAAAT+CGG - Chr5:89974713-89974732 MsG0580028988.01.T01:intron 5.0%
!! TAAAAATAAAATATTATTGA+AGG - Chr5:89975084-89975103 MsG0580028988.01.T01:intron 5.0%
!!! TTTATATTTTAATACTTAAT+TGG - Chr5:89975272-89975291 MsG0580028988.01.T01:intron 5.0%
!!! TTTTTTAATTACTTAATTTT+TGG + Chr5:89974712-89974731 None:intergenic 5.0%
AAGCCTCATCTTCACCCTCA+TGG + Chr5:89974140-89974159 None:intergenic 50.0%
ACCCTCATGGACCCATCAAA+GGG + Chr5:89974127-89974146 None:intergenic 50.0%
CCAAATGCCACGAGAATACG+AGG + Chr5:89974656-89974675 None:intergenic 50.0%
CCACTAGAACGTACCCTTCT+AGG + Chr5:89973992-89974011 None:intergenic 50.0%
CCTCGTATTCTCGTGGCATT+TGG - Chr5:89974653-89974672 MsG0580028988.01.T01:intron 50.0%
TACATACCCCACGAGGCTTT+CGG + Chr5:89974294-89974313 None:intergenic 50.0%
! CCTAGAAGGGTACGTTCTAG+TGG - Chr5:89973989-89974008 MsG0580028988.01.T01:intron 50.0%
! GGCTTTGATAGGCCCTTTGA+TGG - Chr5:89974112-89974131 MsG0580028988.01.T01:intron 50.0%
!! GAGTAATGATGGGTCTGAGG+TGG - Chr5:89974192-89974211 MsG0580028988.01.T01:intron 50.0%
!! TAATGATGGGTCTGAGGTGG+CGG - Chr5:89974195-89974214 MsG0580028988.01.T01:intron 50.0%
CACCCTCATGGACCCATCAA+AGG + Chr5:89974128-89974147 None:intergenic 55.0%
GAGGCTTCCTAAAGCCCAGT+TGG - Chr5:89974153-89974172 MsG0580028988.01.T01:intron 55.0%
GCTAAACCGAAAGCCTCGTG+GGG - Chr5:89974285-89974304 MsG0580028988.01.T01:intron 55.0%
GGCTAAACCGAAAGCCTCGT+GGG - Chr5:89974284-89974303 MsG0580028988.01.T01:intron 55.0%
GGTCCATGAGGGTGAAGATG+AGG - Chr5:89974134-89974153 MsG0580028988.01.T01:intron 55.0%
! GCCCTTTGATGGGTCCATGA+GGG - Chr5:89974123-89974142 MsG0580028988.01.T01:intron 55.0%
! TATGGGTAGCGGTGGTGATG+CGG - Chr5:89974237-89974256 MsG0580028988.01.T01:intron 55.0%
CGGCTAAACCGAAAGCCTCG+TGG - Chr5:89974283-89974302 MsG0580028988.01.T01:intron 60.0%
! GGCCCTTTGATGGGTCCATG+AGG - Chr5:89974122-89974141 MsG0580028988.01.T01:intron 60.0%
GGTGATGCGGCGGAGCATGA+CGG - Chr5:89974250-89974269 MsG0580028988.01.T01:intron 65.0%
! GGGTAGCGGTGGTGATGCGG+CGG - Chr5:89974240-89974259 MsG0580028988.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 89973646 89976469 89973646 ID=MsG0580028988.01;Name=MsG0580028988.01
Chr5 mRNA 89973646 89976469 89973646 ID=MsG0580028988.01.T01;Parent=MsG0580028988.01;Name=MsG0580028988.01.T01;_AED=0.38;_eAED=0.38;_QI=85|1|1|1|1|1|2|171|212
Chr5 exon 89973646 89973879 89973646 ID=MsG0580028988.01.T01:exon:17555;Parent=MsG0580028988.01.T01
Chr5 exon 89975809 89976469 89975809 ID=MsG0580028988.01.T01:exon:17554;Parent=MsG0580028988.01.T01
Chr5 five_prime_UTR 89976385 89976469 89976385 ID=MsG0580028988.01.T01:five_prime_utr;Parent=MsG0580028988.01.T01
Chr5 CDS 89975809 89976384 89975809 ID=MsG0580028988.01.T01:cds;Parent=MsG0580028988.01.T01
Chr5 CDS 89973817 89973879 89973817 ID=MsG0580028988.01.T01:cds;Parent=MsG0580028988.01.T01
Chr5 three_prime_UTR 89973646 89973816 89973646 ID=MsG0580028988.01.T01:three_prime_utr;Parent=MsG0580028988.01.T01
Gene Sequence

>MsG0580028988.01.T01

ATGGGAAACACCATAGGAAAAAGCAAAAAAGCTAAGATTATGAAGATAGATGGAGAAACCTTCAAAGTAAAAACTCCAACAACATCAAACGAAGTTGTCAAAGATTATCCCAACCATGTTCTCTTAGATTCTCAAGCAGTAAAACACTTCGGGCTTAGGGCTAAACCCTTAGAGCCAAATCAAGAACTCAAGCCCAAGAAAATTTACTTCCTAGTAGATTTACCTAAGATTGAGCCCCAAGATGAAAAAACGTCGTTACCTAGAAGGGTACGTTCTAGTGGAATAAGGAACGTGGATGCTAAGGGTAGACTTGAGTTATTGATGCTATCTAAACGCTCCGTTTCAGATATTTCGTTAGTGAAACCACCATCATCAAATTTGGGCTTTGATAGGCCCTTTGATGGGTCCATGAGGGTGAAGATGAGGCTTCCTAAAGCCCAGTTGGAAAAGTTGATGGAAGAGAGTAATGATGGGTCTGAGGTGGCGGAGAAGATTATGAGTTTGTATATGGGTAGCGGTGGTGATGCGGCGGAGCATGACGGTGATGTTTTGCGGCTAAACCGAAAGCCTCGTGGGAAACGAGTGAGTTTTAGCCCAATGGAGATTGAAGAAAGTCCTGTTGAAGCAGCTCCTCAATAG
Protein sequence

>MsG0580028988.01.T01

MGNTIGKSKKAKIMKIDGETFKVKTPTTSNEVVKDYPNHVLLDSQAVKHFGLRAKPLEPNQELKPKKIYFLVDLPKIEPQDEKTSLPRRVRSSGIRNVDAKGRLELLMLSKRSVSDISLVKPPSSNLGFDRPFDGSMRVKMRLPKAQLEKLMEESNDGSEVAEKIMSLYMGSGGDAAEHDGDVLRLNRKPRGKRVSFSPMEIEESPVEAAPQ*