AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021061.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021061.01.T01 MTR_4g065050 70.455 132 39 0 1 132 23 154 1.03e-62 189
MsG0480021061.01.T01 MTR_4g065050 67.797 118 38 0 1 118 1 118 2.51e-53 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 36 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTAATTTCCCCATATCTA+TGG 0.308925 4:+52819528 None:intergenic
ACAAGAACATATTCTTTAGA+AGG 0.321927 4:-52819412 MsG0480021061.01.T01:three_prime_UTR
TTCACAATTACTTTCTAAAT+AGG 0.322641 4:+52819435 None:intergenic
GCCATAGATATGGGGAAATT+AGG 0.328183 4:-52819529 MsG0480021061.01.T01:exon
AGCATGAGAGGACGCGATTT+AGG 0.328687 4:+52819356 None:intergenic
TGCAGGTCCATTATGTAAAA+TGG 0.330791 4:-52819873 MsG0480021061.01.T01:CDS
GGAAGAGGATATGTCTCTTC+AGG 0.339040 4:-52820011 MsG0480021061.01.T01:exon
GAACAACCGGAGCATCTTGC+AGG 0.385771 4:-52819890 MsG0480021061.01.T01:CDS
TGCATTAATTGCGGAACAAC+CGG 0.397610 4:-52819903 MsG0480021061.01.T01:CDS
AAGACAGAAAGCCATAGATA+TGG 0.404902 4:-52819539 MsG0480021061.01.T01:exon
GAAGAAACGGATCATATTCC+AGG 0.409810 4:-52819782 MsG0480021061.01.T01:CDS
TGAATTGATTGCAGCCGAAT+TGG 0.427925 4:-52820032 MsG0480021061.01.T01:five_prime_UTR
TCTTCAGGATTCATTGAGAA+AGG 0.440370 4:-52819996 MsG0480021061.01.T01:CDS
GGTTCTCTGAGATATTTGTT+TGG 0.454082 4:-52819391 MsG0480021061.01.T01:three_prime_UTR
TGAGATATTTGTTTGGAAAG+AGG 0.461787 4:-52819384 MsG0480021061.01.T01:three_prime_UTR
AGACATATCCTCTTCCAATT+CGG 0.468675 4:+52820018 None:intergenic
TGAATTTATTGAGGAAGAAA+CGG 0.471592 4:-52819795 MsG0480021061.01.T01:CDS
AATAAATAGTGGTTAAATTG+TGG 0.476337 4:-52819486 MsG0480021061.01.T01:three_prime_UTR
AGACAGAAAGCCATAGATAT+GGG 0.478143 4:-52819538 MsG0480021061.01.T01:exon
CAATATTGATGAATTTATTG+AGG 0.493374 4:-52819804 MsG0480021061.01.T01:CDS
AATGGACCTGCAAGATGCTC+CGG 0.528367 4:+52819884 None:intergenic
ATTTGTCAATGAATTGTACA+TGG 0.532546 4:-52819714 MsG0480021061.01.T01:CDS
GATTGCAGCCGAATTGGAAG+AGG 0.533785 4:-52820026 MsG0480021061.01.T01:five_prime_UTR
TGCTTACTAGAAACTGTTTG+TGG 0.539123 4:-52820069 MsG0480021061.01.T01:intron
GTCAATGAATTGTACATGGA+TGG 0.549535 4:-52819710 MsG0480021061.01.T01:CDS
AAGGTATGCTGCTTTGTATG+TGG 0.584948 4:-52819681 MsG0480021061.01.T01:CDS
AGTATCAAATTAAGCATGAG+AGG 0.594420 4:+52819344 None:intergenic
TGTACATGGATGGACAAGAA+AGG 0.594997 4:-52819700 MsG0480021061.01.T01:CDS
ATAGTGGTTAAATTGTGGAC+TGG 0.599291 4:-52819481 MsG0480021061.01.T01:three_prime_UTR
GTACATGAAAGCGAGAAAAG+AGG 0.599519 4:-52819840 MsG0480021061.01.T01:CDS
GGGATGTGCAAAGAGCTCAA+TGG 0.617279 4:-52822082 MsG0480021061.01.T01:five_prime_UTR
GGAGATGGATGCATTAATTG+CGG 0.639286 4:-52819912 MsG0480021061.01.T01:CDS
TTGTATGTGGAGAAGTCTAG+TGG 0.643539 4:-52819668 MsG0480021061.01.T01:CDS
GACAGAAAGCCATAGATATG+GGG 0.651329 4:-52819537 MsG0480021061.01.T01:exon
TGTATGTGGAGAAGTCTAGT+GGG 0.662396 4:-52819667 MsG0480021061.01.T01:intron
AATGGAGCTGAGTCTCCTCA+AGG 0.668562 4:-52822064 MsG0480021061.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTTAAAATATTA+TGG - Chr4:52819607-52819626 MsG0480021061.01.T01:intron 0.0%
!! ACTATTTAGATTTATGATAA+TGG - Chr4:52820675-52820694 MsG0480021061.01.T01:intron 15.0%
!! ATGTTGAATTAAATGTTATT+AGG - Chr4:52819388-52819407 MsG0480021061.01.T01:three_prime_UTR 15.0%
!! ATTAATAAAAGAGACATTTA+TGG + Chr4:52820637-52820656 None:intergenic 15.0%
!! ATTAATAACTAGCAAAAATA+CGG + Chr4:52819574-52819593 None:intergenic 15.0%
!! CAAATCTTCTATTTAAATTA+TGG + Chr4:52820341-52820360 None:intergenic 15.0%
!! CTATTTAGATTTATGATAAT+GGG - Chr4:52820676-52820695 MsG0480021061.01.T01:intron 15.0%
!! TGTTGAATTAAATGTTATTA+GGG - Chr4:52819389-52819408 MsG0480021061.01.T01:three_prime_UTR 15.0%
!!! AAATTACATGTATTTTTTGT+AGG + Chr4:52819493-52819512 None:intergenic 15.0%
!!! AATTACATGTATTTTTTGTA+GGG + Chr4:52819492-52819511 None:intergenic 15.0%
!!! TAAAAGTTTCCAATTTTATA+GGG + Chr4:52819432-52819451 None:intergenic 15.0%
!!! TTAAAAGTTTCCAATTTTAT+AGG + Chr4:52819433-52819452 None:intergenic 15.0%
!! AAAAACTGTAAGAAGTTATA+AGG + Chr4:52821792-52821811 None:intergenic 20.0%
!! AAAACTGTAAGAAGTTATAA+GGG + Chr4:52821791-52821810 None:intergenic 20.0%
!! AAATATTTATTATTGGGTGT+AGG - Chr4:52821051-52821070 MsG0480021061.01.T01:intron 20.0%
!! AAATGAAATTCTTGAAAATG+TGG - Chr4:52820207-52820226 MsG0480021061.01.T01:intron 20.0%
!! AATAAATAGTGGTTAAATTG+TGG - Chr4:52821904-52821923 MsG0480021061.01.T01:intron 20.0%
!! CAATATTGATGAATTTATTG+AGG - Chr4:52821586-52821605 MsG0480021061.01.T01:intron 20.0%
!! CATAAACTAATTCATATGTT+AGG - Chr4:52820839-52820858 MsG0480021061.01.T01:intron 20.0%
!! TATGCTATAAGCTTAAAATT+AGG - Chr4:52820133-52820152 MsG0480021061.01.T01:intron 20.0%
!! TTAATAACTAGCAAAAATAC+GGG + Chr4:52819573-52819592 None:intergenic 20.0%
!! TTCACAATTACTTTCTAAAT+AGG + Chr4:52821958-52821977 None:intergenic 20.0%
!!! AAACAAACTTTGTTATAGAA+GGG + Chr4:52819520-52819539 None:intergenic 20.0%
!!! AAACATTTTTATTCAAAAGC+AGG + Chr4:52821190-52821209 None:intergenic 20.0%
!!! ATCATCTAAATGATCATTTT+GGG + Chr4:52820269-52820288 None:intergenic 20.0%
!!! ATTAGGGTTAAATATGTTTT+TGG - Chr4:52819405-52819424 MsG0480021061.01.T01:three_prime_UTR 20.0%
!!! GTCTCTTTTATTAATCATTT+CGG - Chr4:52820642-52820661 MsG0480021061.01.T01:intron 20.0%
!!! GTGTTTTTTCAAATAAATAG+TGG - Chr4:52821893-52821912 MsG0480021061.01.T01:intron 20.0%
!!! TAAACAAACTTTGTTATAGA+AGG + Chr4:52819521-52819540 None:intergenic 20.0%
!!! TATCATCTAAATGATCATTT+TGG + Chr4:52820270-52820289 None:intergenic 20.0%
!!! TTTGCGTTGTTATTTTATTT+GGG - Chr4:52820375-52820394 MsG0480021061.01.T01:intron 20.0%
!!! TTTTGCGTTGTTATTTTATT+TGG - Chr4:52820374-52820393 MsG0480021061.01.T01:intron 20.0%
! AATAAAAATGTTTCTTGCTG+TGG - Chr4:52821197-52821216 MsG0480021061.01.T01:intron 25.0%
! AATTAATCATTAGCAATCAG+TGG + Chr4:52820759-52820778 None:intergenic 25.0%
! AATTCAACATTAGTACTACT+GGG + Chr4:52819378-52819397 None:intergenic 25.0%
! ACAAGAACATATTCTTTAGA+AGG - Chr4:52821978-52821997 MsG0480021061.01.T01:intron 25.0%
! ATTATCATCAACTTATAGTC+AGG + Chr4:52820176-52820195 None:intergenic 25.0%
! ATTTGTCAATGAATTGTACA+TGG - Chr4:52821676-52821695 MsG0480021061.01.T01:intron 25.0%
! GGTGTAAATTTAAAAGTTGA+GGG - Chr4:52820697-52820716 MsG0480021061.01.T01:intron 25.0%
! GGTTAATACTGAAAATATAG+AGG - Chr4:52820228-52820247 MsG0480021061.01.T01:intron 25.0%
! TAATTCAACATTAGTACTAC+TGG + Chr4:52819379-52819398 None:intergenic 25.0%
! TGAATTTATTGAGGAAGAAA+CGG - Chr4:52821595-52821614 MsG0480021061.01.T01:intron 25.0%
! TTATCATCAACTTATAGTCA+GGG + Chr4:52820175-52820194 None:intergenic 25.0%
!! ATAAAAATGTTTCTTGCTGT+GGG - Chr4:52821198-52821217 MsG0480021061.01.T01:intron 25.0%
!! TTAGTGACCATTTTACATAA+TGG + Chr4:52821527-52821546 None:intergenic 25.0%
!!! GCTGTTTTAATAAGCTATAT+TGG + Chr4:52820055-52820074 None:intergenic 25.0%
!!! GGGATATAAATTCTTTTTTG+AGG + Chr4:52819358-52819377 None:intergenic 25.0%
!!! TTGCGTTGTTATTTTATTTG+GGG - Chr4:52820376-52820395 MsG0480021061.01.T01:intron 25.0%
!!! TTTTAAGTTTGATTAGTCTG+TGG - Chr4:52820901-52820920 MsG0480021061.01.T01:intron 25.0%
AACTTGAATTTGGCTGTAAA+TGG - Chr4:52821274-52821293 MsG0480021061.01.T01:intron 30.0%
AGAAGAGAATAATAAGCAAC+CGG - Chr4:52821249-52821268 MsG0480021061.01.T01:intron 30.0%
AGTATCAAATTAAGCATGAG+AGG + Chr4:52822049-52822068 None:intergenic 30.0%
ATTCACAACAAACATAGATC+AGG - Chr4:52819937-52819956 MsG0480021061.01.T01:CDS 30.0%
CATAGATCAGGAAAGTTAAA+CGG - Chr4:52819949-52819968 MsG0480021061.01.T01:CDS 30.0%
CTGATTTATGCACAATCTAT+TGG + Chr4:52821023-52821042 None:intergenic 30.0%
GGGTGTAAATTTAAAAGTTG+AGG - Chr4:52820696-52820715 MsG0480021061.01.T01:intron 30.0%
TGAGATATTTGTTTGGAAAG+AGG - Chr4:52822006-52822025 MsG0480021061.01.T01:intron 30.0%
TGTTGATCATATTGAAGATG+TGG - Chr4:52820312-52820331 MsG0480021061.01.T01:intron 30.0%
TTAAAAAGAGCAGAAAGACA+GGG - Chr4:52819538-52819557 MsG0480021061.01.T01:exon 30.0%
TTAGGGATTACCAGTTAAAA+CGG + Chr4:52819704-52819723 None:intergenic 30.0%
TTTAAAAAGAGCAGAAAGAC+AGG - Chr4:52819537-52819556 MsG0480021061.01.T01:exon 30.0%
TTTATGTTAAAACAGATCCC+AGG + Chr4:52820825-52820844 None:intergenic 30.0%
! ACAGTTTTTCTTGTCACTAT+AGG - Chr4:52821803-52821822 MsG0480021061.01.T01:intron 30.0%
! CTTGTGGATGATTATTGATT+AGG - Chr4:52820929-52820948 MsG0480021061.01.T01:intron 30.0%
! GGATGATTATTGATTAGGAT+CGG - Chr4:52820934-52820953 MsG0480021061.01.T01:intron 30.0%
!! GCATATTTTTACTTAGAGTC+GGG - Chr4:52820398-52820417 MsG0480021061.01.T01:intron 30.0%
!! GGCATATTTTTACTTAGAGT+CGG - Chr4:52820397-52820416 MsG0480021061.01.T01:intron 30.0%
!! TACTATTTTGAAAGAGGAGA+TGG - Chr4:52821463-52821482 MsG0480021061.01.T01:intron 30.0%
!! TTACGCTACTATTTTGAAAG+AGG - Chr4:52821457-52821476 MsG0480021061.01.T01:intron 30.0%
!!! GGATTTTTGGTTTTGCTTTT+TGG + Chr4:52819682-52819701 None:intergenic 30.0%
!!! GTTTTTGGTCCCTATAAAAT+TGG - Chr4:52819420-52819439 MsG0480021061.01.T01:three_prime_UTR 30.0%
AAAAACCCTAAAAGAGAACG+AGG - Chr4:52821433-52821452 MsG0480021061.01.T01:intron 35.0%
AAGACAGAAAGCCATAGATA+TGG - Chr4:52821851-52821870 MsG0480021061.01.T01:intron 35.0%
AAGTAGCAGATACAACAAGT+TGG - Chr4:52819756-52819775 MsG0480021061.01.T01:CDS 35.0%
AAGTGACTACTTCAATACAG+AGG + Chr4:52820783-52820802 None:intergenic 35.0%
ACATAAGCTGTCAATAGCAT+AGG + Chr4:52820102-52820121 None:intergenic 35.0%
AGACAGAAAGCCATAGATAT+GGG - Chr4:52821852-52821871 MsG0480021061.01.T01:intron 35.0%
AGACATATCCTCTTCCAATT+CGG + Chr4:52821375-52821394 None:intergenic 35.0%
AGCTACTAGGTTATGTTGTT+AGG + Chr4:52819722-52819741 None:intergenic 35.0%
AGTGACTACTTCAATACAGA+GGG + Chr4:52820782-52820801 None:intergenic 35.0%
ATAGTGGTTAAATTGTGGAC+TGG - Chr4:52821909-52821928 MsG0480021061.01.T01:intron 35.0%
GAATTTGGCTGTAAATGGAT+GGG - Chr4:52821279-52821298 MsG0480021061.01.T01:intron 35.0%
GCTACTAGGTTATGTTGTTA+GGG + Chr4:52819721-52819740 None:intergenic 35.0%
GCTATTGACAGCTTATGTTT+AGG - Chr4:52820104-52820123 MsG0480021061.01.T01:intron 35.0%
GTCAATAGCATAGGTTCTAT+GGG + Chr4:52820093-52820112 None:intergenic 35.0%
GTCAATGAATTGTACATGGA+TGG - Chr4:52821680-52821699 MsG0480021061.01.T01:intron 35.0%
TAGGGATTACCAGTTAAAAC+GGG + Chr4:52819703-52819722 None:intergenic 35.0%
TCCATAAATCAGTATGACAG+CGG + Chr4:52820582-52820601 None:intergenic 35.0%
TCTTCAGGATTCATTGAGAA+AGG - Chr4:52821394-52821413 MsG0480021061.01.T01:intron 35.0%
TGAATTTGGCTGTAAATGGA+TGG - Chr4:52821278-52821297 MsG0480021061.01.T01:intron 35.0%
TGCAGGTCCATTATGTAAAA+TGG - Chr4:52821517-52821536 MsG0480021061.01.T01:intron 35.0%
TGCTTACTAGAAACTGTTTG+TGG - Chr4:52821321-52821340 MsG0480021061.01.T01:intron 35.0%
TGTCAATAGCATAGGTTCTA+TGG + Chr4:52820094-52820113 None:intergenic 35.0%
! ACAGCCAAATTCAAGTTTAC+CGG + Chr4:52821271-52821290 None:intergenic 35.0%
! ACCAGTTAAAACGGGATTTT+TGG + Chr4:52819695-52819714 None:intergenic 35.0%
! ATCTCTATTTTCAATGCACC+TGG + Chr4:52821629-52821648 None:intergenic 35.0%
! GTAAACCTCGTTCTCTTTTA+GGG + Chr4:52821441-52821460 None:intergenic 35.0%
! TGATATCCAATAGTGTTGCT+AGG - Chr4:52820982-52821001 MsG0480021061.01.T01:intron 35.0%
! TGTTAGGTCACTTGTTGAAT+AGG - Chr4:52820855-52820874 MsG0480021061.01.T01:intron 35.0%
!! ACCAAAAATCCCGTTTTAAC+TGG - Chr4:52819691-52819710 MsG0480021061.01.T01:CDS 35.0%
!! GGTTCTCTGAGATATTTGTT+TGG - Chr4:52821999-52822018 MsG0480021061.01.T01:intron 35.0%
ACTTATAGTCAGGGTGTGTA+TGG + Chr4:52820166-52820185 None:intergenic 40.0%
CAAAAGCCTAGCAACACTAT+TGG + Chr4:52820991-52821010 None:intergenic 40.0%
CAGAGCTAGCTAATAACTAG+GGG + Chr4:52820736-52820755 None:intergenic 40.0%
CATCATCATCATCATCATCC+AGG - Chr4:52819793-52819812 MsG0480021061.01.T01:CDS 40.0%
CCGAACAGAAAAAGAGAGAA+GGG + Chr4:52819827-52819846 None:intergenic 40.0%
CGAACAGAAAAAGAGAGAAG+GGG + Chr4:52819826-52819845 None:intergenic 40.0%
GAAGAAACGGATCATATTCC+AGG - Chr4:52821608-52821627 MsG0480021061.01.T01:intron 40.0%
GACAGAAAGCCATAGATATG+GGG - Chr4:52821853-52821872 MsG0480021061.01.T01:intron 40.0%
GCAACCGGTAAACTTGAATT+TGG - Chr4:52821264-52821283 MsG0480021061.01.T01:intron 40.0%
GCAGAGCTAGCTAATAACTA+GGG + Chr4:52820737-52820756 None:intergenic 40.0%
GCCATAGATATGGGGAAATT+AGG - Chr4:52821861-52821880 MsG0480021061.01.T01:intron 40.0%
GCCTAATTTCCCCATATCTA+TGG + Chr4:52821865-52821884 None:intergenic 40.0%
GGAGATGGATGCATTAATTG+CGG - Chr4:52821478-52821497 MsG0480021061.01.T01:intron 40.0%
GTACATGAAAGCGAGAAAAG+AGG - Chr4:52821550-52821569 MsG0480021061.01.T01:intron 40.0%
TCCGAACAGAAAAAGAGAGA+AGG + Chr4:52819828-52819847 None:intergenic 40.0%
TGAATTGATTGCAGCCGAAT+TGG - Chr4:52821358-52821377 MsG0480021061.01.T01:intron 40.0%
TGCATTAATTGCGGAACAAC+CGG - Chr4:52821487-52821506 MsG0480021061.01.T01:intron 40.0%
TGGGTGTAGGAACAAAATTG+AGG - Chr4:52821064-52821083 MsG0480021061.01.T01:intron 40.0%
TGTACATGGATGGACAAGAA+AGG - Chr4:52821690-52821709 MsG0480021061.01.T01:intron 40.0%
TGTATGTGGAGAAGTCTAGT+GGG - Chr4:52821723-52821742 MsG0480021061.01.T01:intron 40.0%
TTAGTCTGTGGATGTTCTTG+TGG - Chr4:52820913-52820932 MsG0480021061.01.T01:intron 40.0%
TTATACAAGCCTATGCTCCT+GGG - Chr4:52820805-52820824 MsG0480021061.01.T01:intron 40.0%
TTGTATGTGGAGAAGTCTAG+TGG - Chr4:52821722-52821741 MsG0480021061.01.T01:intron 40.0%
TTTATACAAGCCTATGCTCC+TGG - Chr4:52820804-52820823 MsG0480021061.01.T01:intron 40.0%
! CCCTTCTCTCTTTTTCTGTT+CGG - Chr4:52819824-52819843 MsG0480021061.01.T01:CDS 40.0%
! CGTAAACCTCGTTCTCTTTT+AGG + Chr4:52821442-52821461 None:intergenic 40.0%
! CTAGTGGGTAAGTTATACAC+TGG - Chr4:52821738-52821757 MsG0480021061.01.T01:intron 40.0%
! TGTATCTGCTACTTGTTCAG+AGG + Chr4:52819750-52819769 None:intergenic 40.0%
!! AAGGTATGCTGCTTTGTATG+TGG - Chr4:52821709-52821728 MsG0480021061.01.T01:intron 40.0%
!! CAATAGTGTTGCTAGGCTTT+TGG - Chr4:52820989-52821008 MsG0480021061.01.T01:intron 40.0%
!! TCCGCTGTCATACTGATTTA+TGG - Chr4:52820578-52820597 MsG0480021061.01.T01:intron 40.0%
!!! TTTTTGAGGCTCATACCTTG+AGG + Chr4:52819344-52819363 None:intergenic 40.0%
CAACATTTCCGAGAAGTCCA+TGG - Chr4:52821110-52821129 MsG0480021061.01.T01:intron 45.0%
GACAGCGGAGTATACAATCA+GGG + Chr4:52820567-52820586 None:intergenic 45.0%
GGAAGAGGATATGTCTCTTC+AGG - Chr4:52821379-52821398 MsG0480021061.01.T01:intron 45.0%
GGCAGAGCTAGCTAATAACT+AGG + Chr4:52820738-52820757 None:intergenic 45.0%
TAGAGTCGACCCTATCAAAC+TGG + Chr4:52820427-52820446 None:intergenic 45.0%
TATGTATGCGATTCCATCGC+TGG - Chr4:52819884-52819903 MsG0480021061.01.T01:CDS 45.0%
TGACAGCGGAGTATACAATC+AGG + Chr4:52820568-52820587 None:intergenic 45.0%
TTCCGAGAAGTCCATGGAAA+AGG - Chr4:52821116-52821135 MsG0480021061.01.T01:intron 45.0%
TTCCTTCCCCTTTCTCGATA+CGG - Chr4:52819850-52819869 MsG0480021061.01.T01:CDS 45.0%
! AAAACAGATCCCAGGAGCAT+AGG + Chr4:52820817-52820836 None:intergenic 45.0%
! CACCTTTTCCATGGACTTCT+CGG + Chr4:52821121-52821140 None:intergenic 45.0%
! TGTATGTCGCACCTTTTCCA+TGG + Chr4:52821130-52821149 None:intergenic 45.0%
!! TATTCTAAATATTTATTATT+GGG - Chr4:52821045-52821064 MsG0480021061.01.T01:intron 5.0%
!! TTATTCTAAATATTTATTAT+TGG - Chr4:52821044-52821063 MsG0480021061.01.T01:intron 5.0%
AATGGACCTGCAAGATGCTC+CGG + Chr4:52821509-52821528 None:intergenic 50.0%
AATGGAGCTGAGTCTCCTCA+AGG - Chr4:52819326-52819345 MsG0480021061.01.T01:three_prime_UTR 50.0%
AGCATGAGAGGACGCGATTT+AGG + Chr4:52822037-52822056 None:intergenic 50.0%
AGTCGGGTCTCCAGTTTGAT+AGG - Chr4:52820414-52820433 MsG0480021061.01.T01:intron 50.0%
CGGTTGAGTAGACGACTGTT+TGG - Chr4:52819969-52819988 MsG0480021061.01.T01:CDS 50.0%
GAGAGAAGGGGAAACAAACC+TGG + Chr4:52819814-52819833 None:intergenic 50.0%
GATTGCAGCCGAATTGGAAG+AGG - Chr4:52821364-52821383 MsG0480021061.01.T01:intron 50.0%
GTCGGGTCTCCAGTTTGATA+GGG - Chr4:52820415-52820434 MsG0480021061.01.T01:intron 50.0%
! CTTGCTGTGGGCAAAACTGA+AGG - Chr4:52821210-52821229 MsG0480021061.01.T01:intron 50.0%
CTTCCCCTTTCTCGATACGG+CGG - Chr4:52819853-52819872 MsG0480021061.01.T01:CDS 55.0%
GTGAATCGCGCCGCATTGAA+GGG + Chr4:52819923-52819942 None:intergenic 55.0%
TGAATCGCGCCGCATTGAAG+GGG + Chr4:52819922-52819941 None:intergenic 55.0%
TGTGAATCGCGCCGCATTGA+AGG + Chr4:52819924-52819943 None:intergenic 55.0%
! GAACAACCGGAGCATCTTGC+AGG - Chr4:52821500-52821519 MsG0480021061.01.T01:intron 55.0%
! TTCAGAGGCGCAGAGCTACT+AGG + Chr4:52819735-52819754 None:intergenic 55.0%
CCGCATTGAAGGGGCGGATA+CGG + Chr4:52819913-52819932 None:intergenic 60.0%
CCGTATCCGCCCCTTCAATG+CGG - Chr4:52819910-52819929 MsG0480021061.01.T01:CDS 60.0%
CGCCGTATCGAGAAAGGGGA+AGG + Chr4:52819855-52819874 None:intergenic 60.0%
TGCGCCGCCGTATCGAGAAA+GGG + Chr4:52819860-52819879 None:intergenic 60.0%
ATCGCGCCGCATTGAAGGGG+CGG + Chr4:52819919-52819938 None:intergenic 65.0%
GCGCCGCCGTATCGAGAAAG+GGG + Chr4:52819859-52819878 None:intergenic 65.0%
GTGCGCCGCCGTATCGAGAA+AGG + Chr4:52819861-52819880 None:intergenic 65.0%
GCGGATACGGCAGCCAGCGA+TGG + Chr4:52819900-52819919 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 52819311 52822101 52819311 ID=MsG0480021061.01;Name=MsG0480021061.01
Chr4 mRNA 52819311 52822101 52819311 ID=MsG0480021061.01.T01;Parent=MsG0480021061.01;Name=MsG0480021061.01.T01;_AED=0.48;_eAED=0.54;_QI=129|0.5|0.33|1|0.5|0.33|3|234|132
Chr4 exon 52819311 52819587 52819311 ID=MsG0480021061.01.T01:exon:28558;Parent=MsG0480021061.01.T01
Chr4 exon 52819668 52820081 52819668 ID=MsG0480021061.01.T01:exon:28557;Parent=MsG0480021061.01.T01
Chr4 exon 52822031 52822101 52822031 ID=MsG0480021061.01.T01:exon:28556;Parent=MsG0480021061.01.T01
Chr4 five_prime_UTR 52822031 52822101 52822031 ID=MsG0480021061.01.T01:five_prime_utr;Parent=MsG0480021061.01.T01
Chr4 five_prime_UTR 52820024 52820081 52820024 ID=MsG0480021061.01.T01:five_prime_utr;Parent=MsG0480021061.01.T01
Chr4 CDS 52819668 52820023 52819668 ID=MsG0480021061.01.T01:cds;Parent=MsG0480021061.01.T01
Chr4 CDS 52819545 52819587 52819545 ID=MsG0480021061.01.T01:cds;Parent=MsG0480021061.01.T01
Chr4 three_prime_UTR 52819311 52819544 52819311 ID=MsG0480021061.01.T01:three_prime_utr;Parent=MsG0480021061.01.T01
Gene Sequence

>MsG0480021061.01.T01

ATGTCTCTTCAGGATTCATTGAGAAAGGTTAATGACTTGTTTATAAAAACCCTAAAAGAGAACGAGGTTTACGCTACTATTTTGAAAGAGGAGATGGATGCATTAATTGCGGAACAACCGGAGCATCTTGCAGGTCCATTATGTAAAATGGTCACTAAAATGTACATGAAAGCGAGAAAAGAGGTCAGTGAATTGTACAATATTGATGAATTTATTGAGGAAGAAACGGATCATATTCCAGGTGCATTGAAAATAGAGATGATTAAATCGTACATGAAATTGCAAAAATTTGTCAATGAATTGTACATGGATGGACAAGAAAGGTATGCTGCTTTGTATGTGGAGAAGTCTAGTGGGCTAATCAAAGACAAAACAGAAAAGCAAGACAGAAAGCCATAG

Protein sequence

>MsG0480021061.01.T01

MSLQDSLRKVNDLFIKTLKENEVYATILKEEMDALIAEQPEHLAGPLCKMVTKMYMKARKEVSELYNIDEFIEEETDHIPGALKIEMIKSYMKLQKFVNELYMDGQERYAALYVEKSSGLIKDKTEKQDRKP*