AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030303.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030303.01.T01 MTR_6g018315 65.702 242 66 9 1 231 128 363 2.38e-89 273
MsG0680030303.01.T01 MTR_6g018360 65.702 242 66 10 1 231 143 378 2.60e-89 274
MsG0680030303.01.T01 MTR_2g047180 59.641 223 74 6 13 231 153 363 1.15e-81 253
MsG0680030303.01.T01 MTR_6g027100 61.472 231 73 7 14 242 168 384 5.85e-81 253
MsG0680030303.01.T01 MTR_6g027040 63.761 218 63 7 14 229 168 371 1.60e-80 250
MsG0680030303.01.T01 MTR_6g018390 63.801 221 64 7 11 230 157 362 2.60e-79 246
MsG0680030303.01.T01 MTR_3g029650 60.829 217 75 6 18 231 149 358 7.53e-77 250
MsG0680030303.01.T01 MTR_3g029650 47.111 225 101 8 14 229 531 746 4.25e-46 167
MsG0680030303.01.T01 MTR_6g018400 58.874 231 80 7 1 230 149 365 9.18e-75 235
MsG0680030303.01.T01 MTR_1g026850 57.269 227 71 8 15 230 149 360 1.19e-68 219
MsG0680030303.01.T01 MTR_1g007260 54.299 221 89 7 11 229 173 383 3.54e-68 218
MsG0680030303.01.T01 MTR_5g042230 61.053 190 65 5 37 223 6 189 2.27e-66 207
MsG0680030303.01.T01 MTR_3g092000 57.477 214 83 5 19 231 190 396 2.24e-65 212
MsG0680030303.01.T01 MTR_3g030380 55.556 216 77 7 17 231 157 354 9.26e-65 209
MsG0680030303.01.T01 MTR_3g030080 51.282 234 92 9 4 231 152 369 8.48e-63 204
MsG0680030303.01.T01 MTR_3g030480 54.206 214 79 7 17 229 155 350 6.32e-62 201
MsG0680030303.01.T01 MTR_6g018370 64.535 172 52 5 6 174 94 259 6.70e-62 198
MsG0680030303.01.T01 MTR_3g030440 53.738 214 80 7 17 229 156 351 2.43e-61 200
MsG0680030303.01.T01 MTR_3g030360 52.727 220 67 7 13 231 165 348 5.78e-61 199
MsG0680030303.01.T01 MTR_3g091990 54.751 221 92 6 19 238 177 390 1.02e-60 200
MsG0680030303.01.T01 MTR_1g016570 49.776 223 85 6 13 231 158 357 2.75e-58 192
MsG0680030303.01.T01 MTR_3g029920 47.577 227 97 6 13 231 164 376 2.99e-56 187
MsG0680030303.01.T01 MTR_1g007250 60.606 165 54 3 65 226 4 160 4.81e-55 177
MsG0680030303.01.T01 MTR_1g049170 49.302 215 99 6 19 231 175 381 1.10e-54 184
MsG0680030303.01.T01 MTR_3g029750 45.532 235 109 7 1 229 161 382 3.33e-54 182
MsG0680030303.01.T01 MTR_7g007440 94.898 98 5 0 237 334 1 98 5.20e-54 172
MsG0680030303.01.T01 MTR_1g007220 50.746 201 61 6 28 226 3 167 1.17e-52 171
MsG0680030303.01.T01 MTR_3g029670 46.610 236 105 9 1 229 161 382 2.69e-52 177
MsG0680030303.01.T01 MTR_1g016540 55.249 181 65 6 62 231 1 176 9.94e-52 169
MsG0680030303.01.T01 MTR_3g030355 45.259 232 93 9 17 229 174 390 4.87e-49 169
MsG0680030303.01.T01 MTR_3g029640 47.964 221 90 8 18 230 157 360 1.00e-48 167
MsG0680030303.01.T01 MTR_3g029620 47.248 218 97 9 21 231 164 370 2.35e-47 164
MsG0680030303.01.T01 MTR_3g030050 44.068 236 89 8 32 231 190 418 2.39e-47 165
MsG0680030303.01.T01 MTR_3g029800 45.413 218 100 8 18 231 151 353 2.84e-45 158
MsG0680030303.01.T01 MTR_3g047980 44.541 229 98 8 13 240 166 366 2.88e-45 158
MsG0680030303.01.T01 MTR_3g037710 42.672 232 102 6 18 231 42 260 5.10e-45 155
MsG0680030303.01.T01 MTR_3g029950 47.500 200 84 7 19 218 164 342 1.34e-44 156
MsG0680030303.01.T01 MTR_3g029820 50.000 186 65 8 55 230 156 323 4.16e-44 154
MsG0680030303.01.T01 MTR_3g030560 46.759 216 102 9 19 231 165 370 6.00e-44 155
MsG0680030303.01.T01 MTR_3g029840 51.163 172 68 6 19 190 164 319 1.25e-43 154
MsG0680030303.01.T01 MTR_3g029900 46.047 215 88 8 19 229 264 454 1.86e-43 156
MsG0680030303.01.T01 MTR_5g078450 59.701 134 34 1 98 231 2 115 4.24e-43 145
MsG0680030303.01.T01 MTR_3g029870 41.667 216 77 6 3 218 143 309 3.28e-37 136
MsG0680030303.01.T01 MTR_3g058460 44.560 193 89 8 50 231 188 373 2.23e-33 127
MsG0680030303.01.T01 MTR_7g082640 53.933 89 41 0 246 334 6 94 4.14e-32 115
MsG0680030303.01.T01 MTR_8g035995 57.292 96 38 2 71 166 1 93 1.06e-27 106
MsG0680030303.01.T01 MTR_7g005990 38.249 217 103 7 19 231 165 354 1.25e-27 111
MsG0680030303.01.T01 MTR_6g082480 49.383 81 41 0 254 334 12 92 2.75e-26 100
MsG0680030303.01.T01 MTR_4g022880 44.853 136 59 2 107 231 39 169 1.11e-25 101
MsG0680030303.01.T01 MTR_1g109650 42.222 90 52 0 245 334 3 92 1.43e-23 93.2
MsG0680030303.01.T01 MTR_6g004260 77.778 63 9 1 109 171 1 58 1.15e-22 92.8
MsG0680030303.01.T01 MTR_1g007200 52.542 118 43 5 119 233 1 108 2.64e-22 90.9
MsG0680030303.01.T01 MTR_8g074610 35.263 190 96 6 50 227 215 389 2.35e-20 91.3
MsG0680030303.01.T01 MTR_7g082590 42.529 87 50 0 246 332 6 92 1.03e-19 83.2
MsG0680030303.01.T01 MTR_2g041510 35.233 193 94 8 50 227 188 364 1.22e-19 89.0
MsG0680030303.01.T01 MTR_2g041510 35.233 193 94 8 50 227 208 384 1.59e-19 89.0
MsG0680030303.01.T01 MTR_8g032080 63.380 71 22 3 11 81 33 99 7.22e-19 86.3
MsG0680030303.01.T01 MTR_8g074640 34.884 172 92 8 50 209 196 359 7.39e-18 84.0
MsG0680030303.01.T01 MTR_7g012990 56.627 83 30 4 50 131 79 156 1.83e-17 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030303.01.T01 AT3G18280 49.438 89 42 1 246 334 35 120 1.38e-28 107
MsG0680030303.01.T01 AT3G18280 49.438 89 42 1 246 334 11 96 8.51e-28 104
MsG0680030303.01.T01 AT2G17036 37.056 197 103 6 50 230 189 380 1.08e-27 112
MsG0680030303.01.T01 AT2G17036 37.056 197 103 6 50 230 190 381 1.08e-27 112
MsG0680030303.01.T01 AT1G48750 55.556 72 32 0 263 334 23 94 1.58e-26 101
MsG0680030303.01.T01 AT2G17030 32.636 239 131 10 14 230 157 387 6.51e-23 99.0
MsG0680030303.01.T01 AT1G66850 50.725 69 34 0 266 334 34 102 2.13e-20 85.1
MsG0680030303.01.T01 AT1G73780 34.694 98 64 0 237 334 1 98 1.80e-19 82.4
MsG0680030303.01.T01 AT1G43666 46.154 91 43 3 244 334 11 95 6.93e-18 78.2
MsG0680030303.01.T01 AT5G38170 45.588 68 37 0 267 334 36 103 3.99e-17 76.3
MsG0680030303.01.T01 AT5G38195 47.761 67 35 0 268 334 29 95 2.59e-16 73.9
MsG0680030303.01.T01 AT1G43667 35.000 100 61 2 237 334 1 98 6.61e-16 72.8
MsG0680030303.01.T01 AT5G38160 41.176 68 40 0 267 334 36 103 1.54e-15 72.0
MsG0680030303.01.T01 AT5G38180 36.000 100 57 2 237 334 1 95 4.62e-15 70.5
MsG0680030303.01.T01 AT5G24040 27.273 187 125 4 50 230 28 209 2.24e-14 71.6
MsG0680030303.01.T01 AT5G24040 27.273 187 125 4 50 230 100 281 3.08e-14 72.4
MsG0680030303.01.T01 AT5G24040 27.273 187 125 4 50 230 185 366 3.42e-14 73.2
MsG0680030303.01.T01 AT2G14846 48.276 58 30 0 277 334 42 99 4.32e-13 65.1
MsG0680030303.01.T01 AT3G57310 36.364 66 42 0 269 334 38 103 1.20e-12 63.9
MsG0680030303.01.T01 AT1G43665 38.235 68 40 1 265 332 30 95 1.62e-12 64.3
MsG0680030303.01.T01 AT4G12825 38.806 67 39 1 268 334 31 95 2.46e-11 60.1
MsG0680030303.01.T01 AT1G07747 40.909 66 37 1 269 334 29 92 2.69e-11 60.1
MsG0680030303.01.T01 AT5G38197 44.828 58 32 0 277 334 39 96 3.33e-11 59.7

Find 84 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAAATTGTGTTATCTTTA+TGG 0.112775 6:+297663 MsG0680030303.01.T01:CDS
CCTTATGCCACCGACAAATT+TGG 0.232300 6:+297343 MsG0680030303.01.T01:CDS
CAAATTTGGTAAGACAATTA+TGG 0.239364 6:+297357 MsG0680030303.01.T01:CDS
CCAATGGTTCAGCCACTAAT+TGG 0.282829 6:-297405 None:intergenic
GTGACAGCAACGACCTTAAA+AGG 0.287923 6:-297166 None:intergenic
CAATGTAGTTGACATTATAT+TGG 0.293187 6:-297141 None:intergenic
GTAGAGTTCAGTCCTTGTTT+AGG 0.334416 6:+301596 MsG0680030303.01.T01:CDS
GTCTCTGCTCTCTTAACTTC+TGG 0.337118 6:-301658 None:intergenic
TGGGTGAAGTTGACTAGTTT+AGG 0.338247 6:+297571 MsG0680030303.01.T01:CDS
TTTACTCTCCTGGTGCTAGA+AGG 0.339135 6:+301726 MsG0680030303.01.T01:CDS
TTTCTGCATTTCAACAATAT+CGG 0.340176 6:-297241 None:intergenic
TTAAACACATCAATCCTTAC+AGG 0.340322 6:-297526 None:intergenic
GGGTGAAGTTGACTAGTTTA+GGG 0.344790 6:+297572 MsG0680030303.01.T01:CDS
CAGAACAAGTTGGAAAATTC+AGG 0.347648 6:-297775 None:intergenic
AAAGATAACACAATTTCCTT+TGG 0.357321 6:-297659 None:intergenic
CCAAATTTGTCGGTGGCATA+AGG 0.385137 6:-297343 None:intergenic
AATGCAGAAATGATGAGAAT+TGG 0.409857 6:+297254 MsG0680030303.01.T01:CDS
GAGCAGAGACCATGCCTTTG+TGG 0.411218 6:+301671 MsG0680030303.01.T01:CDS
ATCCTTACAGGATCATGATC+AGG 0.413261 6:-297514 None:intergenic
GAAGGGTTACTAGCTCTTGT+GGG 0.413579 6:+301744 MsG0680030303.01.T01:CDS
TTCTGGCAACAAGCACTTGT+TGG 0.433827 6:-301641 None:intergenic
AATTGTCTTACCAAATTTGT+CGG 0.441386 6:-297353 None:intergenic
ATGATTGATGGCTAACAAGT+TGG 0.442427 6:-301776 None:intergenic
GTTTATGAGTGTATACGTAC+TGG 0.445637 6:+297487 MsG0680030303.01.T01:CDS
AAGTCAATCGACATGTCATC+CGG 0.450912 6:-297286 None:intergenic
TAAATATACTGCTTGAGGCT+TGG 0.456606 6:-301707 None:intergenic
GTGGCTGAACCATTGGTTGA+TGG 0.457464 6:+297412 MsG0680030303.01.T01:CDS
TTCAACGTGCCGACAATAAG+AGG 0.466207 6:-297205 None:intergenic
AAACAAGGACTGAACTCTAC+AGG 0.466330 6:-301593 None:intergenic
AGTTGACTAGTTTAGGGGAC+AGG 0.466974 6:+297578 MsG0680030303.01.T01:CDS
TTGACGATCCACTCGGGAGG+TGG 0.473832 6:-297799 None:intergenic
CTGAACCATTGGTTGATGGT+GGG 0.486758 6:+297416 MsG0680030303.01.T01:CDS
CATAAGGCTGTCCTTTGAAA+AGG 0.491804 6:-297327 None:intergenic
TGGCAACAAGCACTTGTTGG+TGG 0.497936 6:-301638 None:intergenic
AGAAGGGTTACTAGCTCTTG+TGG 0.498825 6:+301743 MsG0680030303.01.T01:CDS
CCAATTAGTGGCTGAACCAT+TGG 0.504565 6:+297405 MsG0680030303.01.T01:CDS
TGATTGATGGCTAACAAGTT+GGG 0.507677 6:-301775 None:intergenic
TGTTTATGCAGTAGTGGTTG+TGG 0.508459 6:+301517 MsG0680030303.01.T01:CDS
TTTGGTAAGACAATTATGGT+TGG 0.510631 6:+297361 MsG0680030303.01.T01:CDS
CATTTCAACAATATCGGCTG+TGG 0.512787 6:-297235 None:intergenic
AAGCAGTATATTTACTCTCC+TGG 0.517554 6:+301716 MsG0680030303.01.T01:CDS
GTCGTTGCTGTCACATGCCA+TGG 0.518917 6:+297175 MsG0680030303.01.T01:CDS
TCCCTGATCATGATCCTGTA+AGG 0.523145 6:+297512 MsG0680030303.01.T01:CDS
TGTGTTTAAGCTTAATGAGA+AGG 0.523648 6:+297540 MsG0680030303.01.T01:CDS
TGGTATTGTTTATGCAGTAG+TGG 0.524181 6:+301511 MsG0680030303.01.T01:CDS
CTAGTAACCCTTCTAGCACC+AGG 0.531212 6:-301734 None:intergenic
TTACTCTCCTGGTGCTAGAA+GGG 0.532631 6:+301727 MsG0680030303.01.T01:CDS
TGGGGACATGAAATTCTTAG+TGG 0.533278 6:+297435 MsG0680030303.01.T01:CDS
TCAGATTTGTGTGTTTCCAA+AGG 0.534070 6:+297643 MsG0680030303.01.T01:CDS
TTAATGAGAAGGAGAAGAAG+TGG 0.534717 6:+297551 MsG0680030303.01.T01:CDS
TGAGAATTGGAAGGTAATCC+CGG 0.535577 6:+297267 MsG0680030303.01.T01:CDS
CAATAAGAGGTCTTCTTCCA+TGG 0.539509 6:-297192 None:intergenic
GGAAGAAGACCTCTTATTGT+CGG 0.547172 6:+297196 MsG0680030303.01.T01:CDS
GCTTGAGGCTTGGATTCTTG+AGG 0.548134 6:-301697 None:intergenic
TAAGACAATTATGGTTGGAC+TGG 0.550467 6:+297366 MsG0680030303.01.T01:CDS
TGAACCATTGGTTGATGGTG+GGG 0.555708 6:+297417 MsG0680030303.01.T01:CDS
CAATATAATGTCAACTACAT+TGG 0.556883 6:+297142 MsG0680030303.01.T01:CDS
TAATGAGAAGGAGAAGAAGT+GGG 0.560700 6:+297552 MsG0680030303.01.T01:CDS
ATGAAGAAACACTCTAGCTA+TGG 0.561126 6:+301491 MsG0680030303.01.T01:CDS
TGACTCGAGTGTCCAATTAG+TGG 0.563746 6:+297393 MsG0680030303.01.T01:CDS
TGATGGCTAACAAGTTGGGA+AGG 0.576643 6:-301771 None:intergenic
GCTGAACCATTGGTTGATGG+TGG 0.578776 6:+297415 MsG0680030303.01.T01:CDS
GAGAGTAAATATACTGCTTG+AGG 0.582416 6:-301712 None:intergenic
TTTATGAGTGTATACGTACT+GGG 0.586115 6:+297488 MsG0680030303.01.T01:CDS
AAGGGTTACTAGCTCTTGTG+GGG 0.597115 6:+301745 MsG0680030303.01.T01:CDS
GTTGACTAGTTTAGGGGACA+GGG 0.597165 6:+297579 MsG0680030303.01.T01:CDS
GAAATTCTTAGTGGAGAGCG+AGG 0.597288 6:+297444 MsG0680030303.01.T01:CDS
TGTCTTACCAAATTTGTCGG+TGG 0.597817 6:-297350 None:intergenic
AGTCAATCGACATGTCATCC+GGG 0.600302 6:-297285 None:intergenic
GGGAGGTGGCCAGAACAAGT+TGG 0.600858 6:-297785 None:intergenic
CAGAAATGATGAGAATTGGA+AGG 0.601643 6:+297258 MsG0680030303.01.T01:CDS
ATGTCCCCACCATCAACCAA+TGG 0.604743 6:-297421 None:intergenic
TCCTTACAGGATCATGATCA+GGG 0.608547 6:-297513 None:intergenic
GTTGACATTATATTGGAATG+TGG 0.617294 6:-297134 None:intergenic
GGAGGAGACTTACATGGCAA+AGG 0.624840 6:+301556 MsG0680030303.01.T01:CDS
AACAAGGACTGAACTCTACA+GGG 0.629235 6:-301592 None:intergenic
ATTTCAACAATATCGGCTGT+GGG 0.640269 6:-297234 None:intergenic
TTCACATCAGATATCTACGA+TGG 0.646707 6:+297694 MsG0680030303.01.T01:CDS
GATGGCTAACAAGTTGGGAA+GGG 0.649759 6:-301770 None:intergenic
TTGAGGTAACCACAAAGGCA+TGG 0.650224 6:-301680 None:intergenic
GATTCTTGAGGTAACCACAA+AGG 0.669776 6:-301685 None:intergenic
GGTGAAGTTGACTAGTTTAG+GGG 0.680051 6:+297573 MsG0680030303.01.T01:CDS
AAATTCTTAGTGGAGAGCGA+GGG 0.683320 6:+297445 MsG0680030303.01.T01:CDS
GTTGTGATTGATCCTAAACA+AGG 0.684294 6:-301608 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATAGTAGTAATATA+TGG + Chr6:299121-299140 MsG0680030303.01.T01:intron 10.0%
!! ACTTATAAAAAAAAGAAAAA+TGG + Chr6:297937-297956 MsG0680030303.01.T01:intron 10.0%
!! TATTAATAATAGATCAATAA+TGG + Chr6:299065-299084 MsG0680030303.01.T01:intron 10.0%
!!! TCTCTATTATTATTTTTGTA+TGG - Chr6:299843-299862 None:intergenic 15.0%
!! AGAAGAATATAATTATTCTG+TGG + Chr6:300650-300669 MsG0680030303.01.T01:intron 20.0%
!! ATGATAAAATGAATATATGC+AGG + Chr6:298111-298130 MsG0680030303.01.T01:intron 20.0%
!! CAAAAAAATAGATGAAGAAA+AGG + Chr6:298706-298725 MsG0680030303.01.T01:intron 20.0%
!! TAAATAAACAAGAAACAAAC+AGG - Chr6:299418-299437 None:intergenic 20.0%
!! TATAAACAAAATGTACACAA+TGG + Chr6:298945-298964 MsG0680030303.01.T01:intron 20.0%
!! TCAACAAACTATATATAGAT+AGG - Chr6:300110-300129 None:intergenic 20.0%
!! TGATTTATATAATGAAACGT+CGG - Chr6:301400-301419 None:intergenic 20.0%
!! TGCTTAATTTATGTTTAGTT+TGG + Chr6:297895-297914 MsG0680030303.01.T01:intron 20.0%
!! TTATGAAGTTTCTAAACTAA+AGG + Chr6:298156-298175 MsG0680030303.01.T01:intron 20.0%
!! TTCAATGCAATAAAAACAAA+TGG - Chr6:301126-301145 None:intergenic 20.0%
!! TTCTGTATTTGAAAATAATC+TGG + Chr6:299894-299913 MsG0680030303.01.T01:intron 20.0%
!!! ATAGTTTGTTGAGATTTAAT+AGG + Chr6:300118-300137 MsG0680030303.01.T01:intron 20.0%
!!! ATATCAAGTGATTTAACTTA+AGG + Chr6:298375-298394 MsG0680030303.01.T01:intron 20.0%
!!! ATTTTGTTTTGACTCTTTTT+TGG + Chr6:298076-298095 MsG0680030303.01.T01:intron 20.0%
!!! GTTTCTTGTTTATTTAGATT+AGG + Chr6:299422-299441 MsG0680030303.01.T01:intron 20.0%
!!! TAGAACTACTTTATGTATTT+TGG - Chr6:300376-300395 None:intergenic 20.0%
!!! TTGTTTTTTTTGGCTAAAAT+CGG - Chr6:298640-298659 None:intergenic 20.0%
!!! TTTGTATGGTAAACAATTTT+AGG - Chr6:299829-299848 None:intergenic 20.0%
!!! TTTGTTTTTATTGCATTGAA+TGG + Chr6:301126-301145 MsG0680030303.01.T01:intron 20.0%
!!! TTTTGTTTTGACTCTTTTTT+GGG + Chr6:298077-298096 MsG0680030303.01.T01:intron 20.0%
! AAAGATAACACAATTTCCTT+TGG - Chr6:297662-297681 None:intergenic 25.0%
! AATATAATTATTCTGTGGCA+GGG + Chr6:300655-300674 MsG0680030303.01.T01:intron 25.0%
! AATTGTCTTACCAAATTTGT+CGG - Chr6:297356-297375 None:intergenic 25.0%
! AGGAAATTGTGTTATCTTTA+TGG + Chr6:297663-297682 MsG0680030303.01.T01:CDS 25.0%
! ATCAAAAAAGAAGAATGCAT+GGG - Chr6:298917-298936 None:intergenic 25.0%
! CAAATTTGGTAAGACAATTA+TGG + Chr6:297357-297376 MsG0680030303.01.T01:CDS 25.0%
! CAATAAGATACTATGAAAGT+GGG - Chr6:298834-298853 None:intergenic 25.0%
! CAATATAATGTCAACTACAT+TGG + Chr6:297142-297161 MsG0680030303.01.T01:CDS 25.0%
! CAATGTAGTTGACATTATAT+TGG - Chr6:297144-297163 None:intergenic 25.0%
! CACTTTCATAGTATCTTATT+GGG + Chr6:298833-298852 MsG0680030303.01.T01:intron 25.0%
! CTATTGTTATACTAGTCAAA+AGG - Chr6:301353-301372 None:intergenic 25.0%
! GAAAAAAAAAAAGACCCAAT+AGG - Chr6:298864-298883 None:intergenic 25.0%
! GAATTAATGTCTAGAAACAT+TGG + Chr6:300952-300971 MsG0680030303.01.T01:intron 25.0%
! GCCAAAAAAAACAAAAAAAG+CGG + Chr6:298646-298665 MsG0680030303.01.T01:intron 25.0%
! GTACATTGGTATTGTTAAAA+TGG + Chr6:299923-299942 MsG0680030303.01.T01:intron 25.0%
! TAAAGTTGAAACGAATTGAT+CGG + Chr6:298451-298470 MsG0680030303.01.T01:intron 25.0%
! TAGTATAACAATAGGAGAAA+AGG + Chr6:301359-301378 MsG0680030303.01.T01:intron 25.0%
! TATCTAACACAAAATTGGTT+AGG + Chr6:300520-300539 MsG0680030303.01.T01:intron 25.0%
! TCAACTATCTAACACAAAAT+TGG + Chr6:300515-300534 MsG0680030303.01.T01:intron 25.0%
! TTTCTGCATTTCAACAATAT+CGG - Chr6:297244-297263 None:intergenic 25.0%
!! TGTACCAAATCAACAAATTT+TGG - Chr6:299766-299785 None:intergenic 25.0%
!! TTCATAAGAATAACTTGTCA+TGG - Chr6:298143-298162 None:intergenic 25.0%
!! TTTAGTGTTGGATCTATAAA+GGG + Chr6:300461-300480 MsG0680030303.01.T01:intron 25.0%
!! TTTTCTTTGATATCAAAGGT+GGG + Chr6:300246-300265 MsG0680030303.01.T01:intron 25.0%
!!! ACCGCTTTTTTTGTTTTTTT+TGG - Chr6:298650-298669 None:intergenic 25.0%
!!! CTTTTGACTAGTATAACAAT+AGG + Chr6:301351-301370 MsG0680030303.01.T01:intron 25.0%
!!! TGAATTTTGAGTGATGTTTA+AGG + Chr6:299160-299179 MsG0680030303.01.T01:intron 25.0%
!!! TGTACCAAAATTTGTTGATT+TGG + Chr6:299759-299778 MsG0680030303.01.T01:intron 25.0%
!!! TTATTTTATTGCTCAAGTAG+TGG - Chr6:299108-299127 None:intergenic 25.0%
!!! TTCAGTACTTGTGTTTTTAT+CGG - Chr6:300019-300038 None:intergenic 25.0%
!!! TTTGTTTTGACTCTTTTTTG+GGG + Chr6:298078-298097 MsG0680030303.01.T01:intron 25.0%
AAGAAAGTTGTGATCATTCA+AGG + Chr6:298261-298280 MsG0680030303.01.T01:intron 30.0%
AATGCAGAAATGATGAGAAT+TGG + Chr6:297254-297273 MsG0680030303.01.T01:CDS 30.0%
ACAATGATAGACTCACTATT+GGG - Chr6:301298-301317 None:intergenic 30.0%
ACATCGAAATAACATTACCA+AGG - Chr6:298405-298424 None:intergenic 30.0%
ATAGAGATGCAATTGTGTTA+TGG + Chr6:301075-301094 MsG0680030303.01.T01:intron 30.0%
ATATAATTATTCTGTGGCAG+GGG + Chr6:300656-300675 MsG0680030303.01.T01:intron 30.0%
ATCTCAACTAAGTTTACCTA+AGG + Chr6:298488-298507 MsG0680030303.01.T01:intron 30.0%
ATCTGTTATCTGTAGCTATT+TGG + Chr6:299457-299476 MsG0680030303.01.T01:intron 30.0%
ATTCCCTGGGAAATAAAATA+TGG - Chr6:300714-300733 None:intergenic 30.0%
ATTGTGATATGCTGTAATCA+AGG - Chr6:300836-300855 None:intergenic 30.0%
CCAATAAGATACTATGAAAG+TGG - Chr6:298835-298854 None:intergenic 30.0%
CCACTTTCATAGTATCTTAT+TGG + Chr6:298832-298851 MsG0680030303.01.T01:intron 30.0%
CTGAATAACATATCTATGTC+TGG + Chr6:299386-299405 MsG0680030303.01.T01:intron 30.0%
GAACAAAGGAATAATTTCAG+TGG + Chr6:300982-301001 MsG0680030303.01.T01:intron 30.0%
GAATATAATTATTCTGTGGC+AGG + Chr6:300654-300673 MsG0680030303.01.T01:intron 30.0%
GAATGAATGAAAAAGACCTA+AGG - Chr6:299527-299546 None:intergenic 30.0%
GAGTCTATCATTGTACTATT+AGG + Chr6:301304-301323 MsG0680030303.01.T01:intron 30.0%
GATAGATGAAGAAGACAAAA+TGG + Chr6:298735-298754 MsG0680030303.01.T01:intron 30.0%
GATCAAAAAAGAAGAATGCA+TGG - Chr6:298918-298937 None:intergenic 30.0%
GGAAAAGTAATTTCATTGTG+TGG + Chr6:301033-301052 MsG0680030303.01.T01:intron 30.0%
GTAACAACTAACAATGTTGA+TGG + Chr6:298178-298197 MsG0680030303.01.T01:intron 30.0%
GTATGTTATCTTGCATTGAA+AGG + Chr6:297841-297860 MsG0680030303.01.T01:intron 30.0%
GTTGACATTATATTGGAATG+TGG - Chr6:297137-297156 None:intergenic 30.0%
GTTTAACTGTTTATGTGGTT+TGG + Chr6:301222-301241 MsG0680030303.01.T01:intron 30.0%
TAAACCAACTTCATTTCACT+TGG - Chr6:299613-299632 None:intergenic 30.0%
TAAAGGTTGAACTTTAGTGT+TGG + Chr6:300449-300468 MsG0680030303.01.T01:intron 30.0%
TACAATGATAGACTCACTAT+TGG - Chr6:301299-301318 None:intergenic 30.0%
TAGAGATGCAATTGTGTTAT+GGG + Chr6:301076-301095 MsG0680030303.01.T01:intron 30.0%
TCAAATCAGTCATTGTCTTT+CGG - Chr6:300079-300098 None:intergenic 30.0%
TCAATACTGTGTAGTCATAT+GGG + Chr6:299652-299671 MsG0680030303.01.T01:intron 30.0%
TGAGTGTTTAACTGTTTATG+TGG + Chr6:301217-301236 MsG0680030303.01.T01:intron 30.0%
TGTGACTATGTGTATTGAAT+TGG - Chr6:301460-301479 None:intergenic 30.0%
TGTGTTTAAGCTTAATGAGA+AGG + Chr6:297540-297559 MsG0680030303.01.T01:CDS 30.0%
TTAAACACATCAATCCTTAC+AGG - Chr6:297529-297548 None:intergenic 30.0%
TTCAATACTGTGTAGTCATA+TGG + Chr6:299651-299670 MsG0680030303.01.T01:intron 30.0%
TTCCAAAATTGAGTCAAGAA+TGG + Chr6:300348-300367 MsG0680030303.01.T01:intron 30.0%
TTCTTGCATATAGGTGATTA+GGG + Chr6:301168-301187 MsG0680030303.01.T01:intron 30.0%
TTTATGAGTGTATACGTACT+GGG + Chr6:297488-297507 MsG0680030303.01.T01:CDS 30.0%
TTTGGTAAGACAATTATGGT+TGG + Chr6:297361-297380 MsG0680030303.01.T01:CDS 30.0%
! AAAATTGGTTAGGAGTGTAA+GGG + Chr6:300530-300549 MsG0680030303.01.T01:intron 30.0%
! AAATACATGTGTTTTGCACT+TGG + Chr6:297720-297739 MsG0680030303.01.T01:CDS 30.0%
! AGCGTTTTCTTTGATATCAA+AGG + Chr6:300242-300261 MsG0680030303.01.T01:intron 30.0%
! ATTTAACTTAAGGTTGACCT+TGG + Chr6:298385-298404 MsG0680030303.01.T01:intron 30.0%
! CTTTAGTGTTGGATCTATAA+AGG + Chr6:300460-300479 MsG0680030303.01.T01:intron 30.0%
! GTTTTCTTTGATATCAAAGG+TGG + Chr6:300245-300264 MsG0680030303.01.T01:intron 30.0%
! TCATTGTGGTGATGTAAATT+TGG + Chr6:298327-298346 MsG0680030303.01.T01:intron 30.0%
!! AATAGGGTAATTGTTGTTTG+TGG + Chr6:300588-300607 MsG0680030303.01.T01:intron 30.0%
!! ACTTCCATATTTTATTTCCC+AGG + Chr6:300707-300726 MsG0680030303.01.T01:intron 30.0%
!! ATGTCGATTGACTTTTACAT+GGG + Chr6:297295-297314 MsG0680030303.01.T01:CDS 30.0%
!! CTTCCATATTTTATTTCCCA+GGG + Chr6:300708-300727 MsG0680030303.01.T01:intron 30.0%
!! TCAGTACTTGTGTTTTTATC+GGG - Chr6:300018-300037 None:intergenic 30.0%
!! TGTTTTTATCGGGATTAAGT+TGG - Chr6:300008-300027 None:intergenic 30.0%
!!! AACTAGCTTTTACTGAAATC+TGG + Chr6:298039-298058 MsG0680030303.01.T01:intron 30.0%
!!! ACTAACAATGTTGATGGTTT+TGG + Chr6:298184-298203 MsG0680030303.01.T01:intron 30.0%
!!! GCTTTTTTTGCTTCTATTTC+TGG - Chr6:298687-298706 None:intergenic 30.0%
AAAGGAATAATTTCAGTGGC+AGG + Chr6:300986-301005 MsG0680030303.01.T01:intron 35.0%
AAGCAGTATATTTACTCTCC+TGG + Chr6:301716-301735 MsG0680030303.01.T01:CDS 35.0%
AATGAAACGTCGGTAACATA+TGG - Chr6:301390-301409 None:intergenic 35.0%
ACAAAAAAAGCGGTCAAAAG+CGG + Chr6:298656-298675 MsG0680030303.01.T01:intron 35.0%
ACATTGGTGTGTTTGAACAA+AGG + Chr6:300968-300987 MsG0680030303.01.T01:intron 35.0%
ACTCTTTCTTCAAATGTGAC+TGG + Chr6:300921-300940 MsG0680030303.01.T01:intron 35.0%
ACTTTCGTATTATGGACCTT+AGG + Chr6:299508-299527 MsG0680030303.01.T01:intron 35.0%
AGAAAGACAAATGAAGAAGG+TGG + Chr6:298767-298786 MsG0680030303.01.T01:intron 35.0%
AGAACTTAGAAGGGATTTAC+AGG + Chr6:299554-299573 MsG0680030303.01.T01:intron 35.0%
AGATGAAGAAGACAAAATGG+TGG + Chr6:298738-298757 MsG0680030303.01.T01:intron 35.0%
AGCCATAATAATGAGCTTAG+CGG - Chr6:300199-300218 None:intergenic 35.0%
ATGAAACGTCGGTAACATAT+GGG - Chr6:301389-301408 None:intergenic 35.0%
ATGAAGAAACACTCTAGCTA+TGG + Chr6:301491-301510 MsG0680030303.01.T01:CDS 35.0%
CAAGATCATAGTTGTCAAAG+CGG - Chr6:299323-299342 None:intergenic 35.0%
CAAGTTGTCTAGAAACATCT+TGG + Chr6:300784-300803 MsG0680030303.01.T01:intron 35.0%
CAGAAATGATGAGAATTGGA+AGG + Chr6:297258-297277 MsG0680030303.01.T01:CDS 35.0%
CGATAAGGACTTTCGTATTA+TGG + Chr6:299500-299519 MsG0680030303.01.T01:intron 35.0%
CTGAAGTGTAAGGTGAATAT+AGG + Chr6:300034-300053 MsG0680030303.01.T01:intron 35.0%
CTTCTTGCATATAGGTGATT+AGG + Chr6:301167-301186 MsG0680030303.01.T01:intron 35.0%
GAACTGAAAATGCCTAAGAA+GGG - Chr6:300301-300320 None:intergenic 35.0%
GACTGCTAAGCTCATTATTA+GGG + Chr6:300156-300175 MsG0680030303.01.T01:intron 35.0%
GAGAGTAAATATACTGCTTG+AGG - Chr6:301715-301734 None:intergenic 35.0%
GGAAGAAAGACAAATGAAGA+AGG + Chr6:298764-298783 MsG0680030303.01.T01:intron 35.0%
GTCTAGAAACATCTTGGATT+TGG + Chr6:300790-300809 MsG0680030303.01.T01:intron 35.0%
GTGCAGAAATTAGCACAATA+GGG + Chr6:300572-300591 MsG0680030303.01.T01:intron 35.0%
GTTGTGATTGATCCTAAACA+AGG - Chr6:301611-301630 None:intergenic 35.0%
GTTTATGAGTGTATACGTAC+TGG + Chr6:297487-297506 MsG0680030303.01.T01:CDS 35.0%
TAAATATACTGCTTGAGGCT+TGG - Chr6:301710-301729 None:intergenic 35.0%
TAAGACAATTATGGTTGGAC+TGG + Chr6:297366-297385 MsG0680030303.01.T01:CDS 35.0%
TAATGAGAAGGAGAAGAAGT+GGG + Chr6:297552-297571 MsG0680030303.01.T01:CDS 35.0%
TAGAGAAGACGTCTAATTCA+AGG - Chr6:299871-299890 None:intergenic 35.0%
TATAATTATTCTGTGGCAGG+GGG + Chr6:300657-300676 MsG0680030303.01.T01:intron 35.0%
TCAGATTTGTGTGTTTCCAA+AGG + Chr6:297643-297662 MsG0680030303.01.T01:CDS 35.0%
TCATAGTATCTTATTGGGCT+GGG + Chr6:298838-298857 MsG0680030303.01.T01:intron 35.0%
TCATTCGTCAGAACTTAGAA+GGG + Chr6:299545-299564 MsG0680030303.01.T01:intron 35.0%
TGAACTGAAAATGCCTAAGA+AGG - Chr6:300302-300321 None:intergenic 35.0%
TGACTGCTAAGCTCATTATT+AGG + Chr6:300155-300174 MsG0680030303.01.T01:intron 35.0%
TGGTATTGTTTATGCAGTAG+TGG + Chr6:301511-301530 MsG0680030303.01.T01:CDS 35.0%
TGTGCAGAAATTAGCACAAT+AGG + Chr6:300571-300590 MsG0680030303.01.T01:intron 35.0%
TGTTATCTGTAGCTATTTGG+AGG + Chr6:299460-299479 MsG0680030303.01.T01:intron 35.0%
TGTTCCAAGTGAAATGAAGT+TGG + Chr6:299606-299625 MsG0680030303.01.T01:intron 35.0%
TTAATGAGAAGGAGAAGAAG+TGG + Chr6:297551-297570 MsG0680030303.01.T01:CDS 35.0%
TTCACATCAGATATCTACGA+TGG + Chr6:297694-297713 MsG0680030303.01.T01:CDS 35.0%
TTCATAGTATCTTATTGGGC+TGG + Chr6:298837-298856 MsG0680030303.01.T01:intron 35.0%
TTCATTCGTCAGAACTTAGA+AGG + Chr6:299544-299563 MsG0680030303.01.T01:intron 35.0%
TTGACAACTATGATCTTGGT+TGG + Chr6:299325-299344 MsG0680030303.01.T01:intron 35.0%
! AAGAAGACAAAATGGTGGAA+GGG + Chr6:298743-298762 MsG0680030303.01.T01:intron 35.0%
! AGTTTACCTAAGGTTGATCT+TGG + Chr6:298498-298517 MsG0680030303.01.T01:intron 35.0%
! ATTTCAACAATATCGGCTGT+GGG - Chr6:297237-297256 None:intergenic 35.0%
! CAAAATTGGTTAGGAGTGTA+AGG + Chr6:300529-300548 MsG0680030303.01.T01:intron 35.0%
! CAACTACATTGGTCCTTTTA+AGG + Chr6:297153-297172 MsG0680030303.01.T01:CDS 35.0%
! CAGAACAAGTTGGAAAATTC+AGG - Chr6:297778-297797 None:intergenic 35.0%
! CATTATTATGGCTGGTTCTT+TGG + Chr6:300206-300225 MsG0680030303.01.T01:intron 35.0%
! CTCCATTCTTGACTCAATTT+TGG - Chr6:300353-300372 None:intergenic 35.0%
! GTTGTGGCAATAGTGTTTTT+GGG + Chr6:301533-301552 MsG0680030303.01.T01:CDS 35.0%
!! AACACAAGTACTGAAGTGTA+AGG + Chr6:300024-300043 MsG0680030303.01.T01:intron 35.0%
!! ACTGTTTATGTGGTTTGGTA+AGG + Chr6:301227-301246 MsG0680030303.01.T01:intron 35.0%
!! CATGTCGATTGACTTTTACA+TGG + Chr6:297294-297313 MsG0680030303.01.T01:CDS 35.0%
!! CTGAATTTTCCAACTTGTTC+TGG + Chr6:297776-297795 MsG0680030303.01.T01:CDS 35.0%
!! TTGAATGGAACTGTTTCTAG+TGG + Chr6:301141-301160 MsG0680030303.01.T01:intron 35.0%
!! TTGTGGCAATAGTGTTTTTG+GGG + Chr6:301534-301553 MsG0680030303.01.T01:CDS 35.0%
!!! AATTTTGGAACAAGCTCGTA+AGG - Chr6:300338-300357 None:intergenic 35.0%
!!! GGTTTTGGATGTCTTCTTTT+GGG + Chr6:298199-298218 MsG0680030303.01.T01:intron 35.0%
!!! TGGTTTTGGATGTCTTCTTT+TGG + Chr6:298198-298217 MsG0680030303.01.T01:intron 35.0%
AAAAGGTTGCCGTGAAAGAA+GGG - Chr6:301336-301355 None:intergenic 40.0%
AAACAAGGACTGAACTCTAC+AGG - Chr6:301596-301615 None:intergenic 40.0%
AAATTCTTAGTGGAGAGCGA+GGG + Chr6:297445-297464 MsG0680030303.01.T01:CDS 40.0%
AACAAGGACTGAACTCTACA+GGG - Chr6:301595-301614 None:intergenic 40.0%
AAGTCAATCGACATGTCATC+CGG - Chr6:297289-297308 None:intergenic 40.0%
AGACAAATGAAGAAGGTGGT+TGG + Chr6:298771-298790 MsG0680030303.01.T01:intron 40.0%
AGCCAAAAAAACCGCTATCT+CGG - Chr6:298562-298581 None:intergenic 40.0%
AGTGGATGCTTCTTGCATAT+AGG + Chr6:301159-301178 MsG0680030303.01.T01:intron 40.0%
ATAGGTGATTAGGGAATGTG+TGG + Chr6:301177-301196 MsG0680030303.01.T01:intron 40.0%
ATCCTTACAGGATCATGATC+AGG - Chr6:297517-297536 None:intergenic 40.0%
ATGCAATTGTGTTATGGGAG+TGG + Chr6:301081-301100 MsG0680030303.01.T01:intron 40.0%
ATTTGGTACACATCCAGGAT+GGG + Chr6:299776-299795 MsG0680030303.01.T01:intron 40.0%
CAATAAGAGGTCTTCTTCCA+TGG - Chr6:297195-297214 None:intergenic 40.0%
CAGTAAAAGCTAGTTGCATG+TGG - Chr6:298034-298053 None:intergenic 40.0%
CAGTACCATAACAATGCAAG+TGG - Chr6:298431-298450 None:intergenic 40.0%
CCTTAAAGAACACCCTTCTT+AGG + Chr6:300286-300305 MsG0680030303.01.T01:intron 40.0%
CGCTTTGACAACTATGATCT+TGG + Chr6:299321-299340 MsG0680030303.01.T01:intron 40.0%
CTATGACCAAGATCAACCTT+AGG - Chr6:298507-298526 None:intergenic 40.0%
GAATAATTTCAGTGGCAGGT+TGG + Chr6:300990-301009 MsG0680030303.01.T01:intron 40.0%
GACCGCTAAGCTCATTATTA+TGG + Chr6:300194-300213 MsG0680030303.01.T01:intron 40.0%
GATTCTTGAGGTAACCACAA+AGG - Chr6:301688-301707 None:intergenic 40.0%
GCTAAGCTCATTATTATGGC+TGG + Chr6:300198-300217 MsG0680030303.01.T01:intron 40.0%
GGAAGAAGACCTCTTATTGT+CGG + Chr6:297196-297215 MsG0680030303.01.T01:CDS 40.0%
GGGTCTGTATTGTGTATACT+GGG + Chr6:299796-299815 MsG0680030303.01.T01:intron 40.0%
GTCAGGAGTTTGTATATAGC+AGG + Chr6:301012-301031 MsG0680030303.01.T01:intron 40.0%
GTGGACAATGATGAAACAGA+AGG + Chr6:300607-300626 MsG0680030303.01.T01:intron 40.0%
GTGTTGGATCTATAAAGGGA+GGG + Chr6:300465-300484 MsG0680030303.01.T01:intron 40.0%
GTTGAAACGAATTGATCGGT+TGG + Chr6:298455-298474 MsG0680030303.01.T01:intron 40.0%
GTTGACCACTTGCATTGTTA+TGG + Chr6:298423-298442 MsG0680030303.01.T01:intron 40.0%
TAATCTGGCTGTGAGTACAT+TGG + Chr6:299909-299928 MsG0680030303.01.T01:intron 40.0%
TAGTTGTCAAAGCGGAAATG+CGG - Chr6:299315-299334 None:intergenic 40.0%
TCCTTACAGGATCATGATCA+GGG - Chr6:297516-297535 None:intergenic 40.0%
TGAGAATTGGAAGGTAATCC+CGG + Chr6:297267-297286 MsG0680030303.01.T01:CDS 40.0%
TGGGGACATGAAATTCTTAG+TGG + Chr6:297435-297454 MsG0680030303.01.T01:CDS 40.0%
TGGGTCTGTATTGTGTATAC+TGG + Chr6:299795-299814 MsG0680030303.01.T01:intron 40.0%
TGGTACAAACCCTTTCACTT+GGG - Chr6:299746-299765 None:intergenic 40.0%
TGTAGTCATATGGGTAGAGT+AGG + Chr6:299661-299680 MsG0680030303.01.T01:intron 40.0%
TGTCTTACCAAATTTGTCGG+TGG - Chr6:297353-297372 None:intergenic 40.0%
TGTTTATGCAGTAGTGGTTG+TGG + Chr6:301517-301536 MsG0680030303.01.T01:CDS 40.0%
TTGAATCCAAGTGCTTGTCT+TGG + Chr6:300861-300880 MsG0680030303.01.T01:intron 40.0%
TTGGTACAAACCCTTTCACT+TGG - Chr6:299747-299766 None:intergenic 40.0%
! AGAGTAGGACTAGTAGTACA+AGG + Chr6:299676-299695 MsG0680030303.01.T01:intron 40.0%
! AGTGTTGGATCTATAAAGGG+AGG + Chr6:300464-300483 MsG0680030303.01.T01:intron 40.0%
! CAACTTTTCGACTATTCCCT+GGG - Chr6:300727-300746 None:intergenic 40.0%
! CATAAGGCTGTCCTTTGAAA+AGG - Chr6:297330-297349 None:intergenic 40.0%
! CATTTCAACAATATCGGCTG+TGG - Chr6:297238-297257 None:intergenic 40.0%
! GAAGAAGACAAAATGGTGGA+AGG + Chr6:298742-298761 MsG0680030303.01.T01:intron 40.0%
! GGTTGTGGCAATAGTGTTTT+TGG + Chr6:301532-301551 MsG0680030303.01.T01:CDS 40.0%
! GTAGAGTTCAGTCCTTGTTT+AGG + Chr6:301596-301615 MsG0680030303.01.T01:CDS 40.0%
! TCAACTTTTCGACTATTCCC+TGG - Chr6:300728-300747 None:intergenic 40.0%
! TGGGTTGAAGGATGAACTAA+AGG + Chr6:300432-300451 MsG0680030303.01.T01:intron 40.0%
! TGTGTTTTGCACTTGGATCA+AGG + Chr6:297727-297746 MsG0680030303.01.T01:CDS 40.0%
! TTCTTCGTTGTGCATCGATA+AGG + Chr6:299485-299504 MsG0680030303.01.T01:intron 40.0%
! TTTGATTCGATGTTGACCAC+TGG + Chr6:298302-298321 MsG0680030303.01.T01:intron 40.0%
! TTTGGATGTCTTCTTTTGGG+TGG + Chr6:298202-298221 MsG0680030303.01.T01:intron 40.0%
!! AATCACTCTGAATGGGTTGA+AGG + Chr6:300420-300439 MsG0680030303.01.T01:intron 40.0%
!! CCTAAGAAGGGTGTTCTTTA+AGG - Chr6:300289-300308 None:intergenic 40.0%
!! GGGTGAAGTTGACTAGTTTA+GGG + Chr6:297572-297591 MsG0680030303.01.T01:CDS 40.0%
!! GGTGAAGTTGACTAGTTTAG+GGG + Chr6:297573-297592 MsG0680030303.01.T01:CDS 40.0%
!! TGGGTGAAGTTGACTAGTTT+AGG + Chr6:297571-297590 MsG0680030303.01.T01:CDS 40.0%
!! TGTTGATTTGGTACACATCC+AGG + Chr6:299771-299790 MsG0680030303.01.T01:intron 40.0%
!! TTATCGGGATTAAGTTGGTG+TGG - Chr6:300003-300022 None:intergenic 40.0%
!!! TGTGGCAATAGTGTTTTTGG+GGG + Chr6:301535-301554 MsG0680030303.01.T01:CDS 40.0%
!!! TTTTGCTTCTATTTCTGGCG+CGG - Chr6:298682-298701 None:intergenic 40.0%
AAACGTCGGTAACATATGGG+TGG - Chr6:301386-301405 None:intergenic 45.0%
AACAGACCAAGACAAGCACT+TGG - Chr6:300870-300889 None:intergenic 45.0%
AACGTCGGTAACATATGGGT+GGG - Chr6:301385-301404 None:intergenic 45.0%
AGCTGAAAGAATGGAGGTGA+TGG + Chr6:300680-300699 MsG0680030303.01.T01:intron 45.0%
AGGCATTAGCCCTTCTTTCA+CGG + Chr6:301324-301343 MsG0680030303.01.T01:intron 45.0%
AGTCAATCGACATGTCATCC+GGG - Chr6:297288-297307 None:intergenic 45.0%
CAAAAGGTTGCCGTGAAAGA+AGG - Chr6:301337-301356 None:intergenic 45.0%
CAAATGAAGAAGGTGGTTGG+CGG + Chr6:298774-298793 MsG0680030303.01.T01:intron 45.0%
CCAAATTTGTCGGTGGCATA+AGG - Chr6:297346-297365 None:intergenic 45.0%
CCAATGGTTCAGCCACTAAT+TGG - Chr6:297408-297427 None:intergenic 45.0%
CCAATTAGTGGCTGAACCAT+TGG + Chr6:297405-297424 MsG0680030303.01.T01:CDS 45.0%
CCTTATGCCACCGACAAATT+TGG + Chr6:297343-297362 MsG0680030303.01.T01:CDS 45.0%
GAAATTCTTAGTGGAGAGCG+AGG + Chr6:297444-297463 MsG0680030303.01.T01:CDS 45.0%
GGCGGCTGCATAAAAAACTA+GGG + Chr6:298792-298811 MsG0680030303.01.T01:intron 45.0%
GGTACAAACCCTTTCACTTG+GGG - Chr6:299745-299764 None:intergenic 45.0%
GTCTCTGCTCTCTTAACTTC+TGG - Chr6:301661-301680 None:intergenic 45.0%
GTGACAGCAACGACCTTAAA+AGG - Chr6:297169-297188 None:intergenic 45.0%
TACACAATACAGACCCATCC+TGG - Chr6:299792-299811 None:intergenic 45.0%
TCCCTGATCATGATCCTGTA+AGG + Chr6:297512-297531 MsG0680030303.01.T01:CDS 45.0%
TCGCTGGAATCACTCTGAAT+GGG + Chr6:300413-300432 MsG0680030303.01.T01:intron 45.0%
TGACTCGAGTGTCCAATTAG+TGG + Chr6:297393-297412 MsG0680030303.01.T01:CDS 45.0%
TGGCGGCTGCATAAAAAACT+AGG + Chr6:298791-298810 MsG0680030303.01.T01:intron 45.0%
TTCTGGCAACAAGCACTTGT+TGG - Chr6:301644-301663 None:intergenic 45.0%
TTGAGGTAACCACAAAGGCA+TGG - Chr6:301683-301702 None:intergenic 45.0%
! AAGGGTTACTAGCTCTTGTG+GGG + Chr6:301745-301764 MsG0680030303.01.T01:CDS 45.0%
! AGAAGGGTTACTAGCTCTTG+TGG + Chr6:301743-301762 MsG0680030303.01.T01:CDS 45.0%
! GAAGGGTTACTAGCTCTTGT+GGG + Chr6:301744-301763 MsG0680030303.01.T01:CDS 45.0%
! GATTTGGTACACATCCAGGA+TGG + Chr6:299775-299794 MsG0680030303.01.T01:intron 45.0%
! GGAGACATCTGCCTTTTCAA+AGG + Chr6:297316-297335 MsG0680030303.01.T01:CDS 45.0%
! GGTTAGGAGTGTAAGGGATT+CGG + Chr6:300536-300555 MsG0680030303.01.T01:intron 45.0%
! TCAGCTTTTGACGATCCACT+CGG - Chr6:297809-297828 None:intergenic 45.0%
! TTACTCTCCTGGTGCTAGAA+GGG + Chr6:301727-301746 MsG0680030303.01.T01:CDS 45.0%
! TTCAACGTGCCGACAATAAG+AGG - Chr6:297208-297227 None:intergenic 45.0%
! TTTACTCTCCTGGTGCTAGA+AGG + Chr6:301726-301745 MsG0680030303.01.T01:CDS 45.0%
!! AATACATAAGAGCACCTCGC+TGG + Chr6:300397-300416 MsG0680030303.01.T01:intron 45.0%
!! AGTTGACTAGTTTAGGGGAC+AGG + Chr6:297578-297597 MsG0680030303.01.T01:CDS 45.0%
!! CTGAACCATTGGTTGATGGT+GGG + Chr6:297416-297435 MsG0680030303.01.T01:CDS 45.0%
!! CTGGTTCTTTGGCTCTTGAA+GGG + Chr6:300217-300236 MsG0680030303.01.T01:intron 45.0%
!! GTTGACTAGTTTAGGGGACA+GGG + Chr6:297579-297598 MsG0680030303.01.T01:CDS 45.0%
!! TGAACCATTGGTTGATGGTG+GGG + Chr6:297417-297436 MsG0680030303.01.T01:CDS 45.0%
!! TGGTTCTTTGGCTCTTGAAG+GGG + Chr6:300218-300237 MsG0680030303.01.T01:intron 45.0%
!! TTTTGGGTGGATAAGCGTTC+TGG + Chr6:298215-298234 MsG0680030303.01.T01:intron 45.0%
!!! GACCGAGATAGCGGTTTTTT+TGG + Chr6:298557-298576 MsG0680030303.01.T01:intron 45.0%
AAGGGGGACTCTCTTACAAG+GGG + Chr6:300492-300511 MsG0680030303.01.T01:intron 50.0%
ATGTCCCCACCATCAACCAA+TGG - Chr6:297424-297443 None:intergenic 50.0%
CAAGGGGGACTCTCTTACAA+GGG + Chr6:300491-300510 MsG0680030303.01.T01:intron 50.0%
CATCACCACAATGATGCCAG+TGG - Chr6:298321-298340 None:intergenic 50.0%
CATTCAGAGTGATTCCAGCG+AGG - Chr6:300414-300433 None:intergenic 50.0%
CCATCTTGCCCCAAGTGAAA+GGG + Chr6:299734-299753 MsG0680030303.01.T01:intron 50.0%
CTAGTAACCCTTCTAGCACC+AGG - Chr6:301737-301756 None:intergenic 50.0%
CTATAAAGGGAGGGCTGCAA+GGG + Chr6:300474-300493 MsG0680030303.01.T01:intron 50.0%
CTCGCTGGAATCACTCTGAA+TGG + Chr6:300412-300431 MsG0680030303.01.T01:intron 50.0%
GCTTGAGGCTTGGATTCTTG+AGG - Chr6:301700-301719 None:intergenic 50.0%
GGAGGAGACTTACATGGCAA+AGG + Chr6:301556-301575 MsG0680030303.01.T01:CDS 50.0%
GTTGACCACTGGCATCATTG+TGG + Chr6:298313-298332 MsG0680030303.01.T01:intron 50.0%
TATAAAGGGAGGGCTGCAAG+GGG + Chr6:300475-300494 MsG0680030303.01.T01:intron 50.0%
TCCATCTTGCCCCAAGTGAA+AGG + Chr6:299733-299752 MsG0680030303.01.T01:intron 50.0%
TCTATAAAGGGAGGGCTGCA+AGG + Chr6:300473-300492 MsG0680030303.01.T01:intron 50.0%
TTTGGGGGAGGAGACTTACA+TGG + Chr6:301550-301569 MsG0680030303.01.T01:CDS 50.0%
! CAGCTTTTGACGATCCACTC+GGG - Chr6:297808-297827 None:intergenic 50.0%
! CTTATTGGGCTGGGCCTATT+GGG + Chr6:298847-298866 MsG0680030303.01.T01:intron 50.0%
! GTGGCTGAACCATTGGTTGA+TGG + Chr6:297412-297431 MsG0680030303.01.T01:CDS 50.0%
! TCTTATTGGGCTGGGCCTAT+TGG + Chr6:298846-298865 MsG0680030303.01.T01:intron 50.0%
! TGGCAACAAGCACTTGTTGG+TGG - Chr6:301641-301660 None:intergenic 50.0%
!! ATTTCAGTGGCAGGTTGGTC+AGG + Chr6:300995-301014 MsG0680030303.01.T01:intron 50.0%
!! GCTGAACCATTGGTTGATGG+TGG + Chr6:297415-297434 MsG0680030303.01.T01:CDS 50.0%
!! GCTGGTTCTTTGGCTCTTGA+AGG + Chr6:300216-300235 MsG0680030303.01.T01:intron 50.0%
!!! GGCAATAGTGTTTTTGGGGG+AGG + Chr6:301538-301557 MsG0680030303.01.T01:CDS 50.0%
AGGGGGAGCTGAAAGAATGG+AGG + Chr6:300674-300693 MsG0680030303.01.T01:intron 55.0%
ATAAAGGGAGGGCTGCAAGG+GGG + Chr6:300476-300495 MsG0680030303.01.T01:intron 55.0%
ATGGCCGATGCGGTCAAAAG+CGG + Chr6:298614-298633 MsG0680030303.01.T01:intron 55.0%
CCCTTTCACTTGGGGCAAGA+TGG - Chr6:299737-299756 None:intergenic 55.0%
GAGCAGAGACCATGCCTTTG+TGG + Chr6:301671-301690 MsG0680030303.01.T01:CDS 55.0%
GCAAGGGGGACTCTCTTACA+AGG + Chr6:300490-300509 MsG0680030303.01.T01:intron 55.0%
GCGGGCGATATTTCATGACG+CGG - Chr6:299242-299261 None:intergenic 55.0%
GGCCACCCCAAAAATTGACG+CGG - Chr6:299284-299303 None:intergenic 55.0%
GTCGTTGCTGTCACATGCCA+TGG + Chr6:297175-297194 MsG0680030303.01.T01:CDS 55.0%
TGGGTGGATAAGCGTTCTGG+TGG + Chr6:298218-298237 MsG0680030303.01.T01:intron 55.0%
! CTTTTGACGATCCACTCGGG+AGG - Chr6:297805-297824 None:intergenic 55.0%
ATCGGCCATCAGACACGCAC+CGG - Chr6:298603-298622 None:intergenic 60.0%
CCCAAAAATTGACGCGGCGC+GGG - Chr6:299278-299297 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG - Chr6:299279-299298 None:intergenic 60.0%
GGCAGGGGGAGCTGAAAGAA+TGG + Chr6:300671-300690 MsG0680030303.01.T01:intron 60.0%
GGGAGGTGGCCAGAACAAGT+TGG - Chr6:297788-297807 None:intergenic 60.0%
GTCAAAGCGGAAATGCGGCG+CGG - Chr6:299310-299329 None:intergenic 60.0%
TGCGTGTCTGATGGCCGATG+CGG + Chr6:298604-298623 MsG0680030303.01.T01:intron 60.0%
TTCTCCGCGTTGAGCTGTGC+CGG + Chr6:298581-298600 MsG0680030303.01.T01:intron 60.0%
TTGACGATCCACTCGGGAGG+TGG - Chr6:297802-297821 None:intergenic 60.0%
! CCCGCGCCGCGTCAATTTTT+GGG + Chr6:299275-299294 MsG0680030303.01.T01:intron 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG + Chr6:299276-299295 MsG0680030303.01.T01:intron 60.0%
! TCCCGCGCCGCGTCAATTTT+TGG + Chr6:299274-299293 MsG0680030303.01.T01:intron 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG + Chr6:299279-299298 MsG0680030303.01.T01:intron 60.0%
!!! TCGGCCGCTTTTGACCGCAT+CGG - Chr6:298621-298640 None:intergenic 60.0%
AATTGACGCGGCGCGGGATG+CGG - Chr6:299272-299291 None:intergenic 65.0%
CCGCTATCTCGGTCGCGAAG+CGG - Chr6:298551-298570 None:intergenic 65.0%
CCGCTTCGCGACCGAGATAG+CGG + Chr6:298548-298567 MsG0680030303.01.T01:intron 65.0%
CGCTATCTCGGTCGCGAAGC+GGG - Chr6:298550-298569 None:intergenic 65.0%
TATCTCGGTCGCGAAGCGGG+CGG - Chr6:298547-298566 None:intergenic 65.0%
TGTTCTGGCCACCTCCCGAG+TGG + Chr6:297791-297810 MsG0680030303.01.T01:intron 65.0%
! CTGTGCCGGTGCGTGTCTGA+TGG + Chr6:298595-298614 MsG0680030303.01.T01:intron 65.0%
ATTGACGCGGCGCGGGATGC+GGG - Chr6:299271-299290 None:intergenic 70.0%
! CGCACCGGCACAGCTCAACG+CGG - Chr6:298588-298607 None:intergenic 70.0%
AGCGGAAATGCGGCGCGGCG+CGG - Chr6:299305-299324 None:intergenic 75.0%
CGCGGGATGCGGGAGCGAAG+CGG - Chr6:299261-299280 None:intergenic 75.0%
GCGGGATGCGGGAGCGAAGC+GGG - Chr6:299260-299279 None:intergenic 75.0%
! CGGTCGCGAAGCGGGCGGCG+CGG - Chr6:298542-298561 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr6 gene 297118 301787 297118 ID=MsG0680030303.01;Name=MsG0680030303.01
Chr6 mRNA 297118 301787 297118 ID=MsG0680030303.01.T01;Parent=MsG0680030303.01;Name=MsG0680030303.01.T01;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0|2|0|334
Chr6 exon 297118 297809 297118 ID=MsG0680030303.01.T01:exon:2033;Parent=MsG0680030303.01.T01
Chr6 exon 301475 301787 301475 ID=MsG0680030303.01.T01:exon:2034;Parent=MsG0680030303.01.T01
Chr6 CDS 297118 297809 297118 ID=MsG0680030303.01.T01:cds;Parent=MsG0680030303.01.T01
Chr6 CDS 301475 301787 301475 ID=MsG0680030303.01.T01:cds;Parent=MsG0680030303.01.T01
Gene Sequence

>MsG0680030303.01.T01

ATGGACAACTACGACACCACATTCCAATATAATGTCAACTACATTGGTCCTTTTAAGGTCGTTGCTGTCACATGCCATGGAAGAAGACCTCTTATTGTCGGCACGTTGAACTGTGTCCCACAGCCGATATTGTTGAAATGCAGAAATGATGAGAATTGGAAGGTAATCCCGGATGACATGTCGATTGACTTTTACATGGGAGACATCTGCCTTTTCAAAGGACAGCCTTATGCCACCGACAAATTTGGTAAGACAATTATGGTTGGACTGGATGATGACTCGAGTGTCCAATTAGTGGCTGAACCATTGGTTGATGGTGGGGACATGAAATTCTTAGTGGAGAGCGAGGGTGATTTGTTGTTAGTAGATGTTTATGAGTGTATACGTACTGGGTTCCCTGATCATGATCCTGTAAGGATTGATGTGTTTAAGCTTAATGAGAAGGAGAAGAAGTGGGTGAAGTTGACTAGTTTAGGGGACAGGGTTTTGTTTTTGAACTTTATATGCTCATTTTCTGCATCTGCTTCAGATTTGTGTGTTTCCAAAGGAAATTGTGTTATCTTTATGGATTATCTCTTCACATCAGATATCTACGATGGACGAAATACATGTGTTTTGCACTTGGATCAAGGTCGACTATCATCTGTGTCTGATTCTCCTGAATTTTCCAACTTGTTCTGGCCACCTCCCGATCACAAAAAGAAAAACATGAAGAAACACTCTAGCTATGGTATTGTTTATGCAGTAGTGGTTGTGGCAATAGTGTTTTTGGGGGAGGAGACTTACATGGCAAAGGCATTGACTTGTAGCCCTGTAGAGTTCAGTCCTTGTTTAGGATCAATCACAACTTCTTCTCCACCAACAAGTGCTTGTTGCCAGAAGTTAAGAGAGCAGAGACCATGCCTTTGTGGTTACCTCAAGAATCCAAGCCTCAAGCAGTATATTTACTCTCCTGGTGCTAGAAGGGTTACTAGCTCTTGTGGGGTTCCCTTCCCAACTTGTTAG

Protein sequence

>MsG0680030303.01.T01

MDNYDTTFQYNVNYIGPFKVVAVTCHGRRPLIVGTLNCVPQPILLKCRNDENWKVIPDDMSIDFYMGDICLFKGQPYATDKFGKTIMVGLDDDSSVQLVAEPLVDGGDMKFLVESEGDLLLVDVYECIRTGFPDHDPVRIDVFKLNEKEKKWVKLTSLGDRVLFLNFICSFSASASDLCVSKGNCVIFMDYLFTSDIYDGRNTCVLHLDQGRLSSVSDSPEFSNLFWPPPDHKKKNMKKHSSYGIVYAVVVVAIVFLGEETYMAKALTCSPVEFSPCLGSITTSSPPTSACCQKLREQRPCLCGYLKNPSLKQYIYSPGARRVTSSCGVPFPTC*