AlfalfaGEDB | MsG0580030204.01

M. sativa cultivar ZhongmuNo.1 / MsG0580030204.01

KEGG: K12394
GO: GO:0006886 GO:0015031 GO:0016192 GO:0030117
PFAM: PF01217

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580030204.01.T01	XP_003618095.1	99.242	132	1	0	13	144	30	161	1.20E-89	268

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580030204.01.T01	Q8LEZ8	90.909	132	12	0	13	144	30	161	7.70E-87	253

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580030204.01.T01	A0A2K3PIF4	97.727	132	3	0	13	144	29	160	5.02e-84	268

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0580030204.01	0.853859	1.808488e-61	3.962944e-58
MsG0080047825.01	MsG0580030204.01	0.811228	7.777367e-51	4.787575e-48
MsG0080048058.01	MsG0580030204.01	0.805209	1.491083e-49	7.842259e-47
MsG0080048197.01	MsG0580030204.01	0.824256	8.909099e-54	7.849845e-51
MsG0080048383.01	MsG0580030204.01	0.871136	8.598301e-67	3.430115e-63
MsG0080048784.01	MsG0580030204.01	0.812580	3.946668e-51	2.518774e-48
MsG0080048856.01	MsG0580030204.01	0.824476	7.905384e-54	7.009676e-51
MsG0080048928.01	MsG0580030204.01	0.811754	5.976635e-51	3.730568e-48
MsG0080048952.01	MsG0580030204.01	0.846402	2.222088e-59	3.820305e-56
MsG0080048968.01	MsG0580030204.01	0.866661	2.421434e-65	8.226758e-62

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PPI

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Gene1	Gene2	Type
MsG0480021776.01	MsG0580030204.01	PPI
MsG0580025815.01	MsG0580030204.01	PPI
MsG0580030204.01	MsG0480023782.01	PPI
MsG0880045293.01	MsG0580030204.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580030204.01.T01	MTR_5g098940	99.242	132	1	0	13	144	30	161	1.46e-93	268
MsG0580030204.01.T01	MTR_5g087820	78.947	133	28	0	12	144	53	185	3.65e-77	227
MsG0580030204.01.T01	MTR_1g025190	55.357	112	50	0	13	124	30	141	1.05e-40	133
MsG0580030204.01.T01	MTR_7g100010	45.536	112	57	1	16	123	30	141	1.49e-30	107
MsG0580030204.01.T01	MTR_8g102180	45.536	112	57	1	16	123	30	141	1.49e-30	107
MsG0580030204.01.T01	MTR_8g077600	37.037	135	75	2	13	142	30	159	1.90e-24	92.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580030204.01.T01	AT2G17380	90.909	132	12	0	13	144	30	161	7.85e-88	253
MsG0580030204.01.T01	AT4G35410	90.840	131	12	0	13	143	30	160	2.87e-86	249
MsG0580030204.01.T01	AT4G35410	90.000	70	7	0	12	81	29	98	1.85e-43	139
MsG0580030204.01.T01	AT1G47830	53.571	112	52	0	13	124	30	141	2.20e-39	130
MsG0580030204.01.T01	AT2G19790	45.536	112	57	1	16	123	30	141	5.44e-30	106
MsG0580030204.01.T01	AT3G50860	37.984	129	69	2	13	136	30	152	4.67e-23	89.4
MsG0580030204.01.T01	AT3G50860	38.739	111	63	1	13	118	30	140	6.68e-23	88.2

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Find 35 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGTAATCCGTGAGCTCAG+TGG	0.653418	5:-108211708	MsG0580030204.01.T01:CDS
AATGCCAACAATTACAACAG+CGG	0.693532	5:+108210573	None:intergenic
AATTACAGAGCTTGGGAGCA+CGG	0.567062	5:+108211673	None:intergenic
AATTTCATCAAGTATATAAT+AGG	0.297509	5:+108210873	None:intergenic
AGATGTAAATACACATATCA+AGG	0.517714	5:+108211746	None:intergenic
ATATCCGCTGTTGTAATTGT+TGG	0.443732	5:-108210577	MsG0580030204.01.T01:three_prime_UTR
ATCGCACAAGCTACTAAATA+AGG	0.320939	5:-108210652	MsG0580030204.01.T01:exon
ATGTGTTGCAATTCTATGGA+TGG	0.589205	5:-108210419	MsG0580030204.01.T01:three_prime_UTR
ATTCAACTTAACAATAAACA+TGG	0.633889	5:+108210489	None:intergenic
ATTGGTGGAGACTGCTAAGG+AGG	0.602252	5:-108210698	MsG0580030204.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAGACCAATAATAATGAC+AGG	+	Chr5:108211108-108211127	None:intergenic	30.0%
ACTAGACTGAATATAAAGAC+AGG	+	Chr5:108210920-108210939	None:intergenic	30.0%
AGCAGATATTCATTATACCA+TGG	+	Chr5:108210506-108210525	None:intergenic	30.0%
CTTGATATTCAACTTCCATA+AGG	-	Chr5:108210766-108210785	MsG0580030204.01.T01:intron	30.0%
CTTGATGAAATTCTAATTGC+TGG	-	Chr5:108211181-108211200	MsG0580030204.01.T01:intron	30.0%
GAATATAAAGACAGGTGATA+TGG	+	Chr5:108210912-108210931	None:intergenic	30.0%
GATAATATTACTCAAGGAAC+TGG	+	Chr5:108211374-108211393	None:intergenic	30.0%
GGATTATTAATAGGAGTTAC+AGG	+	Chr5:108210849-108210868	None:intergenic	30.0%
TCTACAAAATTACAGAGCTT+GGG	+	Chr5:108210380-108210399	None:intergenic	30.0%
TTAAACTTGGACATACCTTA+TGG	+	Chr5:108210784-108210803	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	108210299	108211766	108210299	ID=MsG0580030204.01;Name=MsG0580030204.01
Chr5	mRNA	108210299	108211766	108210299	ID=MsG0580030204.01.T01;Parent=MsG0580030204.01;Name=MsG0580030204.01.T01;_AED=0.49;_eAED=0.51;_QI=0\|1\|0.8\|1\|1\|1\|5\|355\|144
Chr5	exon	108210299	108210725	108210299	ID=MsG0580030204.01.T01:exon:17647;Parent=MsG0580030204.01.T01
Chr5	exon	108210810	108210896	108210810	ID=MsG0580030204.01.T01:exon:17646;Parent=MsG0580030204.01.T01
Chr5	exon	108211278	108211313	108211278	ID=MsG0580030204.01.T01:exon:17645;Parent=MsG0580030204.01.T01
Chr5	exon	108211427	108211535	108211427	ID=MsG0580030204.01.T01:exon:17644;Parent=MsG0580030204.01.T01
Chr5	exon	108211636	108211766	108211636	ID=MsG0580030204.01.T01:exon:17643;Parent=MsG0580030204.01.T01
Chr5	CDS	108211636	108211766	108211636	ID=MsG0580030204.01.T01:cds;Parent=MsG0580030204.01.T01
Chr5	CDS	108211427	108211535	108211427	ID=MsG0580030204.01.T01:cds;Parent=MsG0580030204.01.T01
Chr5	CDS	108211278	108211313	108211278	ID=MsG0580030204.01.T01:cds;Parent=MsG0580030204.01.T01
Chr5	CDS	108210810	108210896	108210810	ID=MsG0580030204.01.T01:cds;Parent=MsG0580030204.01.T01
Chr5	CDS	108210654	108210725	108210654	ID=MsG0580030204.01.T01:cds;Parent=MsG0580030204.01.T01
Chr5	three_prime_UTR	108210299	108210653	108210299	ID=MsG0580030204.01.T01:three_prime_utr;Parent=MsG0580030204.01.T01

Gene Sequence

>MsG0580030204.01.T01

TTGATATGTGTATTTACATCTCATATTTTTATTGACAAGGTAATCCGTGAGCTCAGTGGAGTGATTCTTAGCCGTGCTCCCAAGCTCTGTAATTTTGTAGAGTGGAGAGGATATAAAGTTGTTTATAAAAGATATGCTAGTCTATATTTCTGTATGTGTATTGATGATGCTGACAACGAATTGGAAGTACTTGAAATGATTCATCATTTTGTGGAGATTCTTGATCGGTATTTTGGCAGTGTCTGTGAATTGGACTTGATATTCAACTTCCATAAGGCCTATTATATACTTGATGAAATTCTAATTGCTGGCGAGCTTCAGGAGTCGAGCAAAAAAACTGTTGCTCGGTTGATAGCTGCACAGGATTCATTGGTGGAGACTGCTAAGGAGGAAGCCAGTTCCTTGAGTAATATTATCGCACAAGCTACTAAATAA

Protein sequence

>MsG0580030204.01.T01

LICVFTSHIFIDKVIRELSGVILSRAPKLCNFVEWRGYKVVYKRYASLYFCMCIDDADNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEEASSLSNIIAQATK*