AlfalfaGEDB | MsG0780041332.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041332.01

KEGG: K02885
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0022625
PFAM: PF01280

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041332.01.T01	XP_013450385.1	100	208	0	0	1	208	1	208	4.90E-149	422

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041332.01.T01	Q9LUQ6	84.466	206	29	1	1	203	1	206	1.30E-122	348

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041332.01.T01	I3SA92	100.000	208	0	0	1	208	1	208	2.34e-149	422

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048933.01	MsG0780041332.01	0.816219	6.191009e-52	4.360774e-49
MsG0080048971.01	MsG0780041332.01	0.813008	3.180306e-51	2.052766e-48
MsG0180001102.01	MsG0780041332.01	0.823177	1.593609e-53	1.362088e-50
MsG0180003115.01	MsG0780041332.01	0.836361	9.787808e-57	1.230720e-53
MsG0180003313.01	MsG0780041332.01	0.868389	6.770079e-66	2.444568e-62
MsG0180003612.01	MsG0780041332.01	0.851534	8.337084e-61	1.692627e-57
MsG0180004607.01	MsG0780041332.01	0.844271	8.384818e-59	1.346563e-55
MsG0180004609.01	MsG0780041332.01	0.812522	4.063474e-51	2.589462e-48
MsG0180004622.01	MsG0780041332.01	0.849411	3.291141e-60	6.233238e-57
MsG0180004625.01	MsG0780041332.01	0.842512	2.470862e-58	3.755215e-55

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PPI

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Gene1	Gene2	Type
MsG0780041332.01	MsG0180004829.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041332.01.T01	MTR_7g108955	100.000	208	0	1	208	1	208	5.93e-153	422
MsG0780041332.01.T01	MTR_7g108955	100.000	208	0	1	208	1	208	1.14e-152	421
MsG0780041332.01.T01	MTR_1g087910	98.925	186	2	1	186	1	186	1.09e-122	346
MsG0780041332.01.T01	MTR_1g087910	98.925	186	2	1	186	1	186	1.69e-122	345

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041332.01.T01	AT3G16780	84.466	206	29	1	1	203	1	206	1.33e-123	348
MsG0780041332.01.T01	AT1G02780	91.489	188	16	0	1	188	1	188	3.92e-116	329
MsG0780041332.01.T01	AT4G02230	91.489	188	16	0	1	188	1	188	5.55e-115	326
MsG0780041332.01.T01	AT4G16030	42.953	149	33	7	57	194	6	113	1.12e-17	75.9

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Find 82 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATAAGGAAGCTGGTTA+AGG	0.436979	7:+89692535	MsG0780041332.01.T01:CDS
AAAGGAAGACACTCTGGATA+TGG	0.389292	7:+89692632	MsG0780041332.01.T01:CDS
AACCTACCAAGATTCACTCC+AGG	0.604963	7:+89692576	MsG0780041332.01.T01:CDS
AAGAGGAAAGGAAGACACTC+TGG	0.516416	7:+89692626	MsG0780041332.01.T01:CDS
AATAAATTATAATACTCACT+GGG	0.659949	7:-89693879	None:intergenic
AATACTCACTGGGTCTGGGT+TGG	0.502471	7:-89693869	None:intergenic
AATATAAACCTAGGTTTGGG+AGG	0.611645	7:-89692236	None:intergenic
AATGTGCATAGGTAAGAGGA+AGG	0.560538	7:+89693352	MsG0780041332.01.T01:intron
ACGACCGCACTTGAGAACGC+TGG	0.620586	7:-89692359	None:intergenic
ACGAGACCTGGAGTGAATCT+TGG	0.477136	7:-89692582	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTGTCAACAATTCCA+TGG	-	Chr7:89693154-89693173	None:intergenic	30.0%
GAGATTTCGTTAACTTCATT+TGG	-	Chr7:89692403-89692422	None:intergenic	30.0%
AAACATAAGGAAGCTGGTTA+AGG	+	Chr7:89692535-89692554	MsG0780041332.01.T01:CDS	35.0%
AAATGAAGCTAATCGAGGTT+AGG	-	Chr7:89692673-89692692	None:intergenic	35.0%
AATATAAACCTAGGTTTGGG+AGG	-	Chr7:89692239-89692258	None:intergenic	35.0%
AATGAAGCTAATCGAGGTTA+GGG	-	Chr7:89692672-89692691	None:intergenic	35.0%
ACGAGTTTACATTTATGGAC+TGG	+	Chr7:89693264-89693283	MsG0780041332.01.T01:intron	35.0%
CGGAATATAAACCTAGGTTT+GGG	-	Chr7:89692242-89692261	None:intergenic	35.0%
GACATGTACATGAAGGTTAA+GGG	+	Chr7:89693491-89693510	MsG0780041332.01.T01:CDS	35.0%
GTGTTTGTTTGAATGTGCAT+AGG	+	Chr7:89693341-89693360	MsG0780041332.01.T01:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	89692202	89693886	89692202	ID=MsG0780041332.01;Name=MsG0780041332.01
Chr7	mRNA	89692202	89693886	89692202	ID=MsG0780041332.01.T01;Parent=MsG0780041332.01;Name=MsG0780041332.01.T01;_AED=0.50;_eAED=0.50;_QI=123\|1\|0.75\|1\|1\|1\|4\|0\|208
Chr7	exon	89692202	89692436	89692202	ID=MsG0780041332.01.T01:exon:41871;Parent=MsG0780041332.01.T01
Chr7	exon	89692531	89692653	89692531	ID=MsG0780041332.01.T01:exon:41872;Parent=MsG0780041332.01.T01
Chr7	exon	89693363	89693676	89693363	ID=MsG0780041332.01.T01:exon:41873;Parent=MsG0780041332.01.T01
Chr7	exon	89693809	89693886	89693809	ID=MsG0780041332.01.T01:exon:41874;Parent=MsG0780041332.01.T01
Chr7	five_prime_UTR	89692202	89692324	89692202	ID=MsG0780041332.01.T01:five_prime_utr;Parent=MsG0780041332.01.T01
Chr7	CDS	89692325	89692436	89692325	ID=MsG0780041332.01.T01:cds;Parent=MsG0780041332.01.T01
Chr7	CDS	89692531	89692653	89692531	ID=MsG0780041332.01.T01:cds;Parent=MsG0780041332.01.T01
Chr7	CDS	89693363	89693676	89693363	ID=MsG0780041332.01.T01:cds;Parent=MsG0780041332.01.T01
Chr7	CDS	89693809	89693886	89693809	ID=MsG0780041332.01.T01:cds;Parent=MsG0780041332.01.T01

Gene Sequence

>MsG0780041332.01.T01

ATGGTCTCCCTCAAATTGCAAAAGCGCCTCGCTTCCAGCGTTCTCAAGTGCGGTCGTGGCAAAGTTTGGCTTGATCCAAATGAAGTTAACGAAATCTCCATGGCTAATTCTCGCCAAAACATAAGGAAGCTGGTTAAGGATGGGTTTATCATCAGGAAACCTACCAAGATTCACTCCAGGTCTCGTGCTCGTAGAATGAAGGAAGCTAAGAGGAAAGGAAGACACTCTGGATATGGTAAGAGGAAGGGTACCAGAGAGGCAAGGCTTCCCACAAAAATCCTTTGGATGAGAAGAATGCGTGTTCTCAGACGTTTGCTCCGCAAGTACCGGGAGGCCAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTGTTTAAGAATAAGAGAGTTCTGATGGAGAGCATTCACAAGTCCAAAGCTGAGAAGGCTAGAGAGAAGACCTTGTCAGACCAGTTTGAGGCCAAACGTGCCAAGAACAAGGCCAGCCGTGAGAGGAAGCATGCTAGGAGGGAGGAGCGTTTCGCTCAAGGTCCTGGAGGAGAGAAGCCAGCAGAAGCTCCTAGTGCTGCACCTGTTGCTGCAACAAAGCCAACCCAGACCCAGTGA

Protein sequence

>MsG0780041332.01.T01

MVSLKLQKRLASSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPGGEKPAEAPSAAPVAATKPTQTQ*