Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041332.01.T01 | XP_013450385.1 | 100 | 208 | 0 | 0 | 1 | 208 | 1 | 208 | 4.90E-149 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041332.01.T01 | Q9LUQ6 | 84.466 | 206 | 29 | 1 | 1 | 203 | 1 | 206 | 1.30E-122 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041332.01.T01 | I3SA92 | 100.000 | 208 | 0 | 0 | 1 | 208 | 1 | 208 | 2.34e-149 | 422 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048933.01 | MsG0780041332.01 | 0.816219 | 6.191009e-52 | 4.360774e-49 |
| MsG0080048971.01 | MsG0780041332.01 | 0.813008 | 3.180306e-51 | 2.052766e-48 |
| MsG0180001102.01 | MsG0780041332.01 | 0.823177 | 1.593609e-53 | 1.362088e-50 |
| MsG0180003115.01 | MsG0780041332.01 | 0.836361 | 9.787808e-57 | 1.230720e-53 |
| MsG0180003313.01 | MsG0780041332.01 | 0.868389 | 6.770079e-66 | 2.444568e-62 |
| MsG0180003612.01 | MsG0780041332.01 | 0.851534 | 8.337084e-61 | 1.692627e-57 |
| MsG0180004607.01 | MsG0780041332.01 | 0.844271 | 8.384818e-59 | 1.346563e-55 |
| MsG0180004609.01 | MsG0780041332.01 | 0.812522 | 4.063474e-51 | 2.589462e-48 |
| MsG0180004622.01 | MsG0780041332.01 | 0.849411 | 3.291141e-60 | 6.233238e-57 |
| MsG0180004625.01 | MsG0780041332.01 | 0.842512 | 2.470862e-58 | 3.755215e-55 |
| MsG0180005361.01 | MsG0780041332.01 | 0.853059 | 3.068393e-61 | 6.545229e-58 |
| MsG0180005366.01 | MsG0780041332.01 | 0.872547 | 2.925270e-67 | 1.229181e-63 |
| MsG0180005426.01 | MsG0780041332.01 | 0.812996 | 3.200590e-51 | 2.065174e-48 |
| MsG0180005573.01 | MsG0780041332.01 | 0.851317 | 9.600094e-61 | 1.935787e-57 |
| MsG0780040782.01 | MsG0780041332.01 | 0.805720 | 1.164884e-49 | 6.207991e-47 |
| MsG0780040900.01 | MsG0780041332.01 | 0.813764 | 2.169787e-51 | 1.429492e-48 |
| MsG0780041058.01 | MsG0780041332.01 | 0.811922 | 5.495269e-51 | 3.445287e-48 |
| MsG0780041147.01 | MsG0780041332.01 | 0.824032 | 1.005184e-53 | 8.800932e-51 |
| MsG0780041332.01 | MsG0780041461.01 | 0.830274 | 3.220075e-55 | 3.376545e-52 |
| MsG0780041332.01 | MsG0880042125.01 | 0.800483 | 1.411016e-48 | 6.577465e-46 |
| MsG0780041332.01 | MsG0880042209.01 | 0.844761 | 6.189697e-59 | 1.009514e-55 |
| MsG0780041332.01 | MsG0880042604.01 | 0.803399 | 3.551844e-49 | 1.783115e-46 |
| MsG0780041332.01 | MsG0880043517.01 | 0.843219 | 1.602978e-58 | 2.490552e-55 |
| MsG0780041332.01 | MsG0880044003.01 | 0.844505 | 7.254655e-59 | 1.173681e-55 |
| MsG0780041332.01 | MsG0880046444.01 | 0.873796 | 1.113658e-67 | 4.895380e-64 |
| MsG0780041332.01 | MsG0880047082.01 | 0.888752 | 4.466583e-73 | 3.504294e-69 |
| MsG0780041332.01 | MsG0880047388.01 | 0.819481 | 1.135601e-52 | 8.749529e-50 |
| MsG0280010801.01 | MsG0780041332.01 | 0.801270 | 9.744886e-49 | 4.634202e-46 |
| MsG0280011060.01 | MsG0780041332.01 | 0.825003 | 5.938469e-54 | 5.346667e-51 |
| MsG0280011149.01 | MsG0780041332.01 | 0.816716 | 4.790523e-52 | 3.420417e-49 |
| MsG0680030968.01 | MsG0780041332.01 | 0.805803 | 1.119184e-49 | 5.976952e-47 |
| MsG0680031763.01 | MsG0780041332.01 | 0.834962 | 2.212656e-56 | 2.667589e-53 |
| MsG0480019165.01 | MsG0780041332.01 | 0.821883 | 3.186700e-53 | 2.625425e-50 |
| MsG0480019632.01 | MsG0780041332.01 | 0.832060 | 1.172328e-55 | 1.295823e-52 |
| MsG0480020895.01 | MsG0780041332.01 | 0.839665 | 1.383380e-57 | 1.923651e-54 |
| MsG0480022363.01 | MsG0780041332.01 | 0.839774 | 1.295470e-57 | 1.807542e-54 |
| MsG0480023149.01 | MsG0780041332.01 | 0.806209 | 9.194291e-50 | 4.961531e-47 |
| MsG0480023467.01 | MsG0780041332.01 | 0.854198 | 1.444244e-61 | 3.200626e-58 |
| MsG0480023970.01 | MsG0780041332.01 | 0.868334 | 7.054484e-66 | 2.542037e-62 |
| MsG0580024369.01 | MsG0780041332.01 | 0.827250 | 1.735129e-54 | 1.666048e-51 |
| MsG0580025073.01 | MsG0780041332.01 | 0.854091 | 1.550712e-61 | 3.424460e-58 |
| MsG0580025348.01 | MsG0780041332.01 | 0.806074 | 9.814927e-50 | 5.278008e-47 |
| MsG0580025750.01 | MsG0780041332.01 | 0.829457 | 5.094385e-55 | 5.216792e-52 |
| MsG0380015494.01 | MsG0780041332.01 | 0.831857 | 1.315624e-55 | 1.445729e-52 |
| MsG0380016577.01 | MsG0780041332.01 | 0.832618 | 8.528974e-56 | 9.584423e-53 |
| MsG0380016622.01 | MsG0780041332.01 | 0.826231 | 3.038052e-54 | 2.832469e-51 |
| MsG0380016678.01 | MsG0780041332.01 | 0.823249 | 1.533283e-53 | 1.313106e-50 |
| MsG0380016733.01 | MsG0780041332.01 | 0.819299 | 1.249010e-52 | 9.573662e-50 |
| MsG0580027043.01 | MsG0780041332.01 | 0.807634 | 4.592194e-50 | 2.570828e-47 |
| MsG0580029132.01 | MsG0780041332.01 | 0.829589 | 4.729948e-55 | 4.862429e-52 |
| MsG0580029502.01 | MsG0780041332.01 | 0.800147 | 1.651914e-48 | 7.634982e-46 |
| MsG0580029702.01 | MsG0780041332.01 | 0.833861 | 4.180742e-56 | 4.876464e-53 |
| MsG0580029703.01 | MsG0780041332.01 | 0.804292 | 2.317196e-49 | 1.190275e-46 |
| MsG0580030073.01 | MsG0780041332.01 | 0.853676 | 2.041220e-61 | 4.445519e-58 |
| MsG0280006741.01 | MsG0780041332.01 | 0.807549 | 4.788534e-50 | 2.674744e-47 |
| MsG0280009372.01 | MsG0780041332.01 | 0.835058 | 2.093091e-56 | 2.530333e-53 |
| MsG0280010495.01 | MsG0780041332.01 | 0.882415 | 1.062378e-70 | 6.464737e-67 |
| MsG0280010525.01 | MsG0780041332.01 | 0.833868 | 4.165607e-56 | 4.859752e-53 |
| MsG0780036822.01 | MsG0780041332.01 | 0.853529 | 2.250152e-61 | 4.876830e-58 |
| MsG0780037097.01 | MsG0780041332.01 | 0.821568 | 3.768451e-53 | 3.076984e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780041332.01 | MsG0180004829.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041332.01.T01 | MTR_7g108955 | 100.000 | 208 | 0 | 0 | 1 | 208 | 1 | 208 | 5.93e-153 | 422 |
| MsG0780041332.01.T01 | MTR_7g108955 | 100.000 | 208 | 0 | 0 | 1 | 208 | 1 | 208 | 1.14e-152 | 421 |
| MsG0780041332.01.T01 | MTR_1g087910 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 1.09e-122 | 346 |
| MsG0780041332.01.T01 | MTR_1g087910 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 1.69e-122 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041332.01.T01 | AT3G16780 | 84.466 | 206 | 29 | 1 | 1 | 203 | 1 | 206 | 1.33e-123 | 348 |
| MsG0780041332.01.T01 | AT1G02780 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 3.92e-116 | 329 |
| MsG0780041332.01.T01 | AT4G02230 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 5.55e-115 | 326 |
| MsG0780041332.01.T01 | AT4G16030 | 42.953 | 149 | 33 | 7 | 57 | 194 | 6 | 113 | 1.12e-17 | 75.9 |
Find 82 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACGGCTGGCCTTGTTCT+TGG | 0.184984 | 7:-89693618 | None:intergenic |
| TAACCAGCTTCCTTATGTTT+TGG | 0.262188 | 7:-89692532 | None:intergenic |
| CTCTCTAGCCTTCTCAGCTT+TGG | 0.269286 | 7:-89693561 | None:intergenic |
| CATGTGCTTGTCAATCTTCT+TGG | 0.273354 | 7:-89693462 | None:intergenic |
| GAGATTTCGTTAACTTCATT+TGG | 0.301140 | 7:-89692400 | None:intergenic |
| GGCCTTGTTCTTGGCACGTT+TGG | 0.315875 | 7:-89693609 | None:intergenic |
| GGAGGTTACTTTGGGCTTAC+GGG | 0.316525 | 7:-89692218 | None:intergenic |
| GGGAGGTTACTTTGGGCTTA+CGG | 0.323708 | 7:-89692219 | None:intergenic |
| ATTATAATACTCACTGGGTC+TGG | 0.332335 | 7:-89693874 | None:intergenic |
| TGTGGGAAGCCTTGCCTCTC+TGG | 0.339458 | 7:-89693378 | None:intergenic |
| TTGTAAAATGTTTAGGGTCC+TGG | 0.366808 | 7:+89693794 | MsG0780041332.01.T01:intron |
| CTAGGTTTGGGAGGTTACTT+TGG | 0.371462 | 7:-89692227 | None:intergenic |
| GCGGAATATAAACCTAGGTT+TGG | 0.386089 | 7:-89692240 | None:intergenic |
| AAAGGAAGACACTCTGGATA+TGG | 0.389292 | 7:+89692632 | MsG0780041332.01.T01:CDS |
| AGTGCGGTCGTGGCAAAGTT+TGG | 0.396257 | 7:+89692371 | MsG0780041332.01.T01:CDS |
| TAGGTTTGGGAGGTTACTTT+GGG | 0.404762 | 7:-89692226 | None:intergenic |
| GTTGGCTTTGTTGCAGCAAC+AGG | 0.405850 | 7:-89693851 | None:intergenic |
| TGACATGTACATGAAGGTTA+AGG | 0.407532 | 7:+89693490 | MsG0780041332.01.T01:CDS |
| TTTGAATGTGCATAGGTAAG+AGG | 0.427942 | 7:+89693348 | MsG0780041332.01.T01:intron |
| AAACATAAGGAAGCTGGTTA+AGG | 0.436979 | 7:+89692535 | MsG0780041332.01.T01:CDS |
| TGTCAATCTTCTTGGCCTCC+CGG | 0.437210 | 7:-89693454 | None:intergenic |
| GACGTTTGCTCCGCAAGTAC+CGG | 0.438844 | 7:+89693435 | MsG0780041332.01.T01:CDS |
| CGGAATATAAACCTAGGTTT+GGG | 0.444563 | 7:-89692239 | None:intergenic |
| TCTGCTGGCTTCTCTCCTCC+AGG | 0.456457 | 7:-89693812 | None:intergenic |
| TGGCACGTTTGGCCTCAAAC+TGG | 0.457561 | 7:-89693598 | None:intergenic |
| AGCGTTCTCAAGTGCGGTCG+TGG | 0.462752 | 7:+89692361 | MsG0780041332.01.T01:CDS |
| TTAAGGATGGGTTTATCATC+AGG | 0.469316 | 7:+89692552 | MsG0780041332.01.T01:CDS |
| TAAGAATAAGAGAGTTCTGA+TGG | 0.474240 | 7:+89693523 | MsG0780041332.01.T01:CDS |
| ACGAGACCTGGAGTGAATCT+TGG | 0.477136 | 7:-89692582 | None:intergenic |
| AGCATGCTTCCTCTCACGGC+TGG | 0.480022 | 7:-89693630 | None:intergenic |
| TTATAATACTCACTGGGTCT+GGG | 0.483209 | 7:-89693873 | None:intergenic |
| GCAGCAGCAGCTAAGGCAAA+TGG | 0.487109 | 7:-89692274 | None:intergenic |
| GACATGTACATGAAGGTTAA+GGG | 0.489265 | 7:+89693491 | MsG0780041332.01.T01:CDS |
| TCCTAGCATGCTTCCTCTCA+CGG | 0.495294 | 7:-89693634 | None:intergenic |
| AATACTCACTGGGTCTGGGT+TGG | 0.502471 | 7:-89693869 | None:intergenic |
| GACCTTGTCAGACCAGTTTG+AGG | 0.515108 | 7:+89693586 | MsG0780041332.01.T01:CDS |
| AAGAGGAAAGGAAGACACTC+TGG | 0.516416 | 7:+89692626 | MsG0780041332.01.T01:CDS |
| TGTGTGAGCAGCAGCAGCTA+AGG | 0.521894 | 7:-89692281 | None:intergenic |
| TCTTGGCCTCCCGGTACTTG+CGG | 0.524961 | 7:-89693445 | None:intergenic |
| GCAGCACTAGGAGCTTCTGC+TGG | 0.526670 | 7:-89693827 | None:intergenic |
| ACGTTTGCTCCGCAAGTACC+GGG | 0.538079 | 7:+89693436 | MsG0780041332.01.T01:CDS |
| CATTCTACGAGCACGAGACC+TGG | 0.539613 | 7:-89692594 | None:intergenic |
| ATAAGGAAGCTGGTTAAGGA+TGG | 0.542795 | 7:+89692539 | MsG0780041332.01.T01:CDS |
| CACGCATTCTTCTCATCCAA+AGG | 0.547413 | 7:-89693406 | None:intergenic |
| GCCGTGAGAGGAAGCATGCT+AGG | 0.550143 | 7:+89693633 | MsG0780041332.01.T01:CDS |
| TCACAAGTCCAAAGCTGAGA+AGG | 0.552682 | 7:+89693553 | MsG0780041332.01.T01:CDS |
| GTCTCGTGCTCGTAGAATGA+AGG | 0.553438 | 7:+89692598 | MsG0780041332.01.T01:CDS |
| ATGAAGGAAGCTAAGAGGAA+AGG | 0.554411 | 7:+89692614 | MsG0780041332.01.T01:CDS |
| AATGTGCATAGGTAAGAGGA+AGG | 0.560538 | 7:+89693352 | MsG0780041332.01.T01:intron |
| TAAGGAAGCTGGTTAAGGAT+GGG | 0.561785 | 7:+89692540 | MsG0780041332.01.T01:CDS |
| GTAGAATGAAGGAAGCTAAG+AGG | 0.564014 | 7:+89692609 | MsG0780041332.01.T01:CDS |
| GCAGCAACAGGTGCAGCACT+AGG | 0.565218 | 7:-89693839 | None:intergenic |
| TGAGAGGAAGCATGCTAGGA+GGG | 0.573502 | 7:+89693637 | MsG0780041332.01.T01:CDS |
| AGAACAAGGCCAGCCGTGAG+AGG | 0.576244 | 7:+89693621 | MsG0780041332.01.T01:CDS |
| AGGCCAAAACATAAGGAAGC+TGG | 0.578002 | 7:+89692529 | MsG0780041332.01.T01:intron |
| ACTTGAGAACGCTGGAAGCG+AGG | 0.578193 | 7:-89692351 | None:intergenic |
| GGCCTCAAACTGGTCTGACA+AGG | 0.581380 | 7:-89693588 | None:intergenic |
| TTGCAATTTGAGGGAGACCA+TGG | 0.583099 | 7:-89692323 | None:intergenic |
| AGCTAAGGCAAATGGTGGAA+TGG | 0.586649 | 7:-89692266 | None:intergenic |
| CAAAGTAACCTCCCAAACCT+AGG | 0.588394 | 7:+89692228 | MsG0780041332.01.T01:five_prime_UTR |
| GGCCAAACGTGCCAAGAACA+AGG | 0.590924 | 7:+89693607 | MsG0780041332.01.T01:CDS |
| TAACCTTCATGTACATGTCA+TGG | 0.601477 | 7:-89693487 | None:intergenic |
| AACCTACCAAGATTCACTCC+AGG | 0.604963 | 7:+89692576 | MsG0780041332.01.T01:CDS |
| AATATAAACCTAGGTTTGGG+AGG | 0.611645 | 7:-89692236 | None:intergenic |
| TGAAGTTAACGAAATCTCCA+TGG | 0.615795 | 7:+89692405 | MsG0780041332.01.T01:CDS |
| ACGACCGCACTTGAGAACGC+TGG | 0.620586 | 7:-89692359 | None:intergenic |
| GTGAGAGGAAGCATGCTAGG+AGG | 0.624464 | 7:+89693636 | MsG0780041332.01.T01:CDS |
| GCAGCAGCTAAGGCAAATGG+TGG | 0.625597 | 7:-89692271 | None:intergenic |
| GCTTCCAGCGTTCTCAAGTG+CGG | 0.631493 | 7:+89692355 | MsG0780041332.01.T01:CDS |
| TAAAATGTTTAGGGTCCTGG+AGG | 0.638656 | 7:+89693797 | MsG0780041332.01.T01:intron |
| GGAATGCGGAATATAAACCT+AGG | 0.644195 | 7:-89692245 | None:intergenic |
| TAGCTTACGAGAATTAGCCA+TGG | 0.650085 | 7:-89692422 | None:intergenic |
| GTACCATGACATGTACATGA+AGG | 0.655137 | 7:+89693484 | MsG0780041332.01.T01:CDS |
| GACCTGGAGTGAATCTTGGT+AGG | 0.656690 | 7:-89692578 | None:intergenic |
| GAGGAAGCATGCTAGGAGGG+AGG | 0.658603 | 7:+89693640 | MsG0780041332.01.T01:CDS |
| GGAAGGGTACCAGAGAGGCA+AGG | 0.658732 | 7:+89693369 | MsG0780041332.01.T01:CDS |
| AATAAATTATAATACTCACT+GGG | 0.659949 | 7:-89693879 | None:intergenic |
| CAGAAACAAGCAATCAACCA+TGG | 0.677132 | 7:+89692306 | MsG0780041332.01.T01:exon |
| GCAAATGGTGGAATGGAATG+CGG | 0.677584 | 7:-89692259 | None:intergenic |
| TAAGAGGAAGGGTACCAGAG+AGG | 0.678708 | 7:+89693364 | MsG0780041332.01.T01:CDS |
| ATGTGCATAGGTAAGAGGAA+GGG | 0.705490 | 7:+89693353 | MsG0780041332.01.T01:intron |
| TTTGCTCCGCAAGTACCGGG+AGG | 0.725507 | 7:+89693439 | MsG0780041332.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATAAACAAACAAAA+TGG | - | Chr7:89692799-89692818 | None:intergenic | 10.0% |
| !!! | ATTCTTTTTGAAATTATTAA+TGG | + | Chr7:89693755-89693774 | MsG0780041332.01.T01:intron | 10.0% |
| !! | ATCTATTCTTATTATGATTT+AGG | + | Chr7:89692696-89692715 | MsG0780041332.01.T01:intron | 15.0% |
| !! | TAATAATTGTTTGAAAACTA+TGG | + | Chr7:89693128-89693147 | MsG0780041332.01.T01:intron | 15.0% |
| !!! | TTTTCTTTGTAAAATGTTTA+GGG | + | Chr7:89693788-89693807 | MsG0780041332.01.T01:intron | 15.0% |
| !! | AAAGAATTTCAAGAAATCAT+AGG | - | Chr7:89693689-89693708 | None:intergenic | 20.0% |
| !! | ATGTATTTCAGTTTACAAAA+TGG | + | Chr7:89693093-89693112 | MsG0780041332.01.T01:intron | 20.0% |
| !!! | AAAGTTGATTTTGATTTTGT+AGG | + | Chr7:89692509-89692528 | MsG0780041332.01.T01:intron | 20.0% |
| !!! | CTAAACATTTTACAAAGAAA+AGG | - | Chr7:89693789-89693808 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTGTAAAATGTTT+AGG | + | Chr7:89693787-89693806 | MsG0780041332.01.T01:intron | 20.0% |
| !!! | TCATATTTTACAAAACAACA+TGG | - | Chr7:89693239-89693258 | None:intergenic | 20.0% |
| ! | ACATAGATGTATATGATTTG+AGG | + | Chr7:89693713-89693732 | MsG0780041332.01.T01:intron | 25.0% |
| ! | GAAATACGAGTTTACATTTA+TGG | + | Chr7:89693259-89693278 | MsG0780041332.01.T01:intron | 25.0% |
| ! | TTAGGTTATACACTCAAAAT+AGG | + | Chr7:89692714-89692733 | MsG0780041332.01.T01:intron | 25.0% |
| !! | ATTTAAAATGAAGCTAATCG+AGG | - | Chr7:89692678-89692697 | None:intergenic | 25.0% |
| AAAAACTGTCAACAATTCCA+TGG | - | Chr7:89693154-89693173 | None:intergenic | 30.0% | |
| GAGATTTCGTTAACTTCATT+TGG | - | Chr7:89692403-89692422 | None:intergenic | 30.0% | |
| ! | AACTAATCAATCTAAGACAG+TGG | - | Chr7:89693005-89693024 | None:intergenic | 30.0% |
| ! | ATTTTGTAGGCCAAAACATA+AGG | + | Chr7:89692522-89692541 | MsG0780041332.01.T01:intron | 30.0% |
| ! | TAAGAATAAGAGAGTTCTGA+TGG | + | Chr7:89693523-89693542 | MsG0780041332.01.T01:CDS | 30.0% |
| ! | TGAGTGAAAAGCTAACATTT+TGG | - | Chr7:89693062-89693081 | None:intergenic | 30.0% |
| AAACATAAGGAAGCTGGTTA+AGG | + | Chr7:89692535-89692554 | MsG0780041332.01.T01:CDS | 35.0% | |
| AAATGAAGCTAATCGAGGTT+AGG | - | Chr7:89692673-89692692 | None:intergenic | 35.0% | |
| AATATAAACCTAGGTTTGGG+AGG | - | Chr7:89692239-89692258 | None:intergenic | 35.0% | |
| AATGAAGCTAATCGAGGTTA+GGG | - | Chr7:89692672-89692691 | None:intergenic | 35.0% | |
| ACGAGTTTACATTTATGGAC+TGG | + | Chr7:89693264-89693283 | MsG0780041332.01.T01:intron | 35.0% | |
| CGGAATATAAACCTAGGTTT+GGG | - | Chr7:89692242-89692261 | None:intergenic | 35.0% | |
| GACATGTACATGAAGGTTAA+GGG | + | Chr7:89693491-89693510 | MsG0780041332.01.T01:CDS | 35.0% | |
| GTGTTTGTTTGAATGTGCAT+AGG | + | Chr7:89693341-89693360 | MsG0780041332.01.T01:intron | 35.0% | |
| TAACCTTCATGTACATGTCA+TGG | - | Chr7:89693490-89693509 | None:intergenic | 35.0% | |
| TGAAGTTAACGAAATCTCCA+TGG | + | Chr7:89692405-89692424 | MsG0780041332.01.T01:CDS | 35.0% | |
| TGACATGTACATGAAGGTTA+AGG | + | Chr7:89693490-89693509 | MsG0780041332.01.T01:CDS | 35.0% | |
| TTACTGAGTTGCTCATCAAT+TGG | + | Chr7:89693205-89693224 | MsG0780041332.01.T01:intron | 35.0% | |
| TTGTTTGAAAACTATGGCCA+TGG | + | Chr7:89693134-89693153 | MsG0780041332.01.T01:intron | 35.0% | |
| TTTGAATGTGCATAGGTAAG+AGG | + | Chr7:89693348-89693367 | MsG0780041332.01.T01:intron | 35.0% | |
| ! | CTCATCCAAAGGATTTTTGT+GGG | - | Chr7:89693398-89693417 | None:intergenic | 35.0% |
| ! | TAACCAGCTTCCTTATGTTT+TGG | - | Chr7:89692535-89692554 | None:intergenic | 35.0% |
| ! | TCTCATCCAAAGGATTTTTG+TGG | - | Chr7:89693399-89693418 | None:intergenic | 35.0% |
| ! | TTAAGGATGGGTTTATCATC+AGG | + | Chr7:89692552-89692571 | MsG0780041332.01.T01:CDS | 35.0% |
| ! | TTGTAAAATGTTTAGGGTCC+TGG | + | Chr7:89693794-89693813 | MsG0780041332.01.T01:intron | 35.0% |
| !! | GCTAACATTTTGGTGTGAAA+AGG | - | Chr7:89693052-89693071 | None:intergenic | 35.0% |
| AAAGGAAGACACTCTGGATA+TGG | + | Chr7:89692632-89692651 | MsG0780041332.01.T01:CDS | 40.0% | |
| AATGTGCATAGGTAAGAGGA+AGG | + | Chr7:89693352-89693371 | MsG0780041332.01.T01:intron | 40.0% | |
| ATAAGGAAGCTGGTTAAGGA+TGG | + | Chr7:89692539-89692558 | MsG0780041332.01.T01:CDS | 40.0% | |
| ATATCTCTAGATGACCAGAC+AGG | - | Chr7:89693303-89693322 | None:intergenic | 40.0% | |
| ATGAAGCTAATCGAGGTTAG+GGG | - | Chr7:89692671-89692690 | None:intergenic | 40.0% | |
| ATGAAGGAAGCTAAGAGGAA+AGG | + | Chr7:89692614-89692633 | MsG0780041332.01.T01:CDS | 40.0% | |
| ATGTGCATAGGTAAGAGGAA+GGG | + | Chr7:89693353-89693372 | MsG0780041332.01.T01:intron | 40.0% | |
| CAGAAACAAGCAATCAACCA+TGG | + | Chr7:89692306-89692325 | MsG0780041332.01.T01:exon | 40.0% | |
| CATGTGCTTGTCAATCTTCT+TGG | - | Chr7:89693465-89693484 | None:intergenic | 40.0% | |
| GCGGAATATAAACCTAGGTT+TGG | - | Chr7:89692243-89692262 | None:intergenic | 40.0% | |
| GGAATGCGGAATATAAACCT+AGG | - | Chr7:89692248-89692267 | None:intergenic | 40.0% | |
| GTACCATGACATGTACATGA+AGG | + | Chr7:89693484-89693503 | MsG0780041332.01.T01:CDS | 40.0% | |
| GTAGAATGAAGGAAGCTAAG+AGG | + | Chr7:89692609-89692628 | MsG0780041332.01.T01:CDS | 40.0% | |
| TAAGGAAGCTGGTTAAGGAT+GGG | + | Chr7:89692540-89692559 | MsG0780041332.01.T01:CDS | 40.0% | |
| TAGCTTACGAGAATTAGCCA+TGG | - | Chr7:89692425-89692444 | None:intergenic | 40.0% | |
| ! | TAAAATGTTTAGGGTCCTGG+AGG | + | Chr7:89693797-89693816 | MsG0780041332.01.T01:intron | 40.0% |
| ! | TAGGTTTGGGAGGTTACTTT+GGG | - | Chr7:89692229-89692248 | None:intergenic | 40.0% |
| AACCTACCAAGATTCACTCC+AGG | + | Chr7:89692576-89692595 | MsG0780041332.01.T01:CDS | 45.0% | |
| AAGAGGAAAGGAAGACACTC+TGG | + | Chr7:89692626-89692645 | MsG0780041332.01.T01:CDS | 45.0% | |
| AGGCCAAAACATAAGGAAGC+TGG | + | Chr7:89692529-89692548 | MsG0780041332.01.T01:intron | 45.0% | |
| CAAAGTAACCTCCCAAACCT+AGG | + | Chr7:89692228-89692247 | MsG0780041332.01.T01:five_prime_UTR | 45.0% | |
| CACGCATTCTTCTCATCCAA+AGG | - | Chr7:89693409-89693428 | None:intergenic | 45.0% | |
| CTAGGTTTGGGAGGTTACTT+TGG | - | Chr7:89692230-89692249 | None:intergenic | 45.0% | |
| GAAGACACTCTGGATATGGT+TGG | + | Chr7:89692636-89692655 | MsG0780041332.01.T01:intron | 45.0% | |
| GGCTTCCCACAAAAATCCTT+TGG | + | Chr7:89693390-89693409 | MsG0780041332.01.T01:CDS | 45.0% | |
| TCACAAGTCCAAAGCTGAGA+AGG | + | Chr7:89693553-89693572 | MsG0780041332.01.T01:CDS | 45.0% | |
| TTGCAATTTGAGGGAGACCA+TGG | - | Chr7:89692326-89692345 | None:intergenic | 45.0% | |
| ! | AGCTAAGGCAAATGGTGGAA+TGG | - | Chr7:89692269-89692288 | None:intergenic | 45.0% |
| ! | GCAAATGGTGGAATGGAATG+CGG | - | Chr7:89692262-89692281 | None:intergenic | 45.0% |
| !! | GAGGCGCTTTTGCAATTTGA+GGG | - | Chr7:89692335-89692354 | None:intergenic | 45.0% |
| !!! | AATAAATTTTATTTTAAGAT+CGG | - | Chr7:89692835-89692854 | None:intergenic | 5.0% |
| ACGAGACCTGGAGTGAATCT+TGG | - | Chr7:89692585-89692604 | None:intergenic | 50.0% | |
| GACCTGGAGTGAATCTTGGT+AGG | - | Chr7:89692581-89692600 | None:intergenic | 50.0% | |
| GACCTTGTCAGACCAGTTTG+AGG | + | Chr7:89693586-89693605 | MsG0780041332.01.T01:CDS | 50.0% | |
| GCTCAAAGCATGTTCCTGTC+TGG | + | Chr7:89693286-89693305 | MsG0780041332.01.T01:intron | 50.0% | |
| GTCTCGTGCTCGTAGAATGA+AGG | + | Chr7:89692598-89692617 | MsG0780041332.01.T01:CDS | 50.0% | |
| TCCTAGCATGCTTCCTCTCA+CGG | - | Chr7:89693637-89693656 | None:intergenic | 50.0% | |
| TGTCAATCTTCTTGGCCTCC+CGG | - | Chr7:89693457-89693476 | None:intergenic | 50.0% | |
| ! | CTCTCTAGCCTTCTCAGCTT+TGG | - | Chr7:89693564-89693583 | None:intergenic | 50.0% |
| ! | GGAGGTTACTTTGGGCTTAC+GGG | - | Chr7:89692221-89692240 | None:intergenic | 50.0% |
| ! | GGGAGGTTACTTTGGGCTTA+CGG | - | Chr7:89692222-89692241 | None:intergenic | 50.0% |
| ! | TGAGAGGAAGCATGCTAGGA+GGG | + | Chr7:89693637-89693656 | MsG0780041332.01.T01:CDS | 50.0% |
| !! | CGAGGCGCTTTTGCAATTTG+AGG | - | Chr7:89692336-89692355 | None:intergenic | 50.0% |
| !! | GTTGGCTTTGTTGCAGCAAC+AGG | - | Chr7:89693854-89693873 | None:intergenic | 50.0% |
| !! | TAAGAGGAAGGGTACCAGAG+AGG | + | Chr7:89693364-89693383 | MsG0780041332.01.T01:CDS | 50.0% |
| ACGTTTGCTCCGCAAGTACC+GGG | + | Chr7:89693436-89693455 | MsG0780041332.01.T01:CDS | 55.0% | |
| ACTTGAGAACGCTGGAAGCG+AGG | - | Chr7:89692354-89692373 | None:intergenic | 55.0% | |
| AGTGCGGTCGTGGCAAAGTT+TGG | + | Chr7:89692371-89692390 | MsG0780041332.01.T01:CDS | 55.0% | |
| CATTCTACGAGCACGAGACC+TGG | - | Chr7:89692597-89692616 | None:intergenic | 55.0% | |
| GACGTTTGCTCCGCAAGTAC+CGG | + | Chr7:89693435-89693454 | MsG0780041332.01.T01:CDS | 55.0% | |
| GCAGCAGCAGCTAAGGCAAA+TGG | - | Chr7:89692277-89692296 | None:intergenic | 55.0% | |
| GCAGCAGCTAAGGCAAATGG+TGG | - | Chr7:89692274-89692293 | None:intergenic | 55.0% | |
| GCTTCCAGCGTTCTCAAGTG+CGG | + | Chr7:89692355-89692374 | MsG0780041332.01.T01:CDS | 55.0% | |
| GGCCAAACGTGCCAAGAACA+AGG | + | Chr7:89693607-89693626 | MsG0780041332.01.T01:CDS | 55.0% | |
| TGGCACGTTTGGCCTCAAAC+TGG | - | Chr7:89693601-89693620 | None:intergenic | 55.0% | |
| TGTGTGAGCAGCAGCAGCTA+AGG | - | Chr7:89692284-89692303 | None:intergenic | 55.0% | |
| ! | GGCCTCAAACTGGTCTGACA+AGG | - | Chr7:89693591-89693610 | None:intergenic | 55.0% |
| ! | GTGAGAGGAAGCATGCTAGG+AGG | + | Chr7:89693636-89693655 | MsG0780041332.01.T01:CDS | 55.0% |
| !! | GGCCTTGTTCTTGGCACGTT+TGG | - | Chr7:89693612-89693631 | None:intergenic | 55.0% |
| ACGACCGCACTTGAGAACGC+TGG | - | Chr7:89692362-89692381 | None:intergenic | 60.0% | |
| AGAACAAGGCCAGCCGTGAG+AGG | + | Chr7:89693621-89693640 | MsG0780041332.01.T01:CDS | 60.0% | |
| AGCATGCTTCCTCTCACGGC+TGG | - | Chr7:89693633-89693652 | None:intergenic | 60.0% | |
| AGCGTTCTCAAGTGCGGTCG+TGG | + | Chr7:89692361-89692380 | MsG0780041332.01.T01:CDS | 60.0% | |
| GCAGCAACAGGTGCAGCACT+AGG | - | Chr7:89693842-89693861 | None:intergenic | 60.0% | |
| GCAGCACTAGGAGCTTCTGC+TGG | - | Chr7:89693830-89693849 | None:intergenic | 60.0% | |
| TCTTGGCCTCCCGGTACTTG+CGG | - | Chr7:89693448-89693467 | None:intergenic | 60.0% | |
| TGTGGGAAGCCTTGCCTCTC+TGG | - | Chr7:89693381-89693400 | None:intergenic | 60.0% | |
| ! | GAGGAAGCATGCTAGGAGGG+AGG | + | Chr7:89693640-89693659 | MsG0780041332.01.T01:CDS | 60.0% |
| ! | GCCGTGAGAGGAAGCATGCT+AGG | + | Chr7:89693633-89693652 | MsG0780041332.01.T01:CDS | 60.0% |
| !! | CTCACGGCTGGCCTTGTTCT+TGG | - | Chr7:89693621-89693640 | None:intergenic | 60.0% |
| !! | GGAAGGGTACCAGAGAGGCA+AGG | + | Chr7:89693369-89693388 | MsG0780041332.01.T01:CDS | 60.0% |
| !! | TCTGCTGGCTTCTCTCCTCC+AGG | - | Chr7:89693815-89693834 | None:intergenic | 60.0% |
| !! | TTTGCTCCGCAAGTACCGGG+AGG | + | Chr7:89693439-89693458 | MsG0780041332.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 89692202 | 89693886 | 89692202 | ID=MsG0780041332.01;Name=MsG0780041332.01 |
| Chr7 | mRNA | 89692202 | 89693886 | 89692202 | ID=MsG0780041332.01.T01;Parent=MsG0780041332.01;Name=MsG0780041332.01.T01;_AED=0.50;_eAED=0.50;_QI=123|1|0.75|1|1|1|4|0|208 |
| Chr7 | exon | 89692202 | 89692436 | 89692202 | ID=MsG0780041332.01.T01:exon:41871;Parent=MsG0780041332.01.T01 |
| Chr7 | exon | 89692531 | 89692653 | 89692531 | ID=MsG0780041332.01.T01:exon:41872;Parent=MsG0780041332.01.T01 |
| Chr7 | exon | 89693363 | 89693676 | 89693363 | ID=MsG0780041332.01.T01:exon:41873;Parent=MsG0780041332.01.T01 |
| Chr7 | exon | 89693809 | 89693886 | 89693809 | ID=MsG0780041332.01.T01:exon:41874;Parent=MsG0780041332.01.T01 |
| Chr7 | five_prime_UTR | 89692202 | 89692324 | 89692202 | ID=MsG0780041332.01.T01:five_prime_utr;Parent=MsG0780041332.01.T01 |
| Chr7 | CDS | 89692325 | 89692436 | 89692325 | ID=MsG0780041332.01.T01:cds;Parent=MsG0780041332.01.T01 |
| Chr7 | CDS | 89692531 | 89692653 | 89692531 | ID=MsG0780041332.01.T01:cds;Parent=MsG0780041332.01.T01 |
| Chr7 | CDS | 89693363 | 89693676 | 89693363 | ID=MsG0780041332.01.T01:cds;Parent=MsG0780041332.01.T01 |
| Chr7 | CDS | 89693809 | 89693886 | 89693809 | ID=MsG0780041332.01.T01:cds;Parent=MsG0780041332.01.T01 |
| Gene Sequence |
| Protein sequence |
