AlfalfaGEDB | MsG0280011234.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011234.01

KEGG: K02903
GO: -
PFAM: PF01778

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011234.01.T01	XP_003597635.1	99.31	145	1	0	1	145	1	145	5.31E-100	293

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011234.01.T01	Q9M0E2	72.028	143	40	0	1	143	1	143	1.27E-72	216

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011234.01.T01	G7IUL4	99.310	145	1	0	1	145	1	145	2.54e-100	293

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048971.01	MsG0280011234.01	0.850674	1.457824e-60	2.877642e-57
MsG0180003313.01	MsG0280011234.01	0.852882	3.449110e-61	7.312942e-58
MsG0180004129.01	MsG0280011234.01	0.832425	9.520687e-56	1.063734e-52
MsG0180004607.01	MsG0280011234.01	0.805358	1.387102e-49	7.323622e-47
MsG0180005361.01	MsG0280011234.01	0.865676	4.966877e-65	1.629989e-61
MsG0180005366.01	MsG0280011234.01	0.885456	8.004590e-72	5.497540e-68
MsG0180005426.01	MsG0280011234.01	0.838478	2.807461e-57	3.764921e-54
MsG0180006041.01	MsG0280011234.01	0.813706	2.234470e-51	1.469888e-48
MsG0280010801.01	MsG0280011234.01	0.849199	3.769323e-60	7.091709e-57
MsG0280010995.01	MsG0280011234.01	0.830891	2.274106e-55	2.428244e-52
MsG0280011060.01	MsG0280011234.01	0.805246	1.464166e-49	7.707908e-47
MsG0280011234.01	MsG0280011308.01	0.822354	2.478172e-53	2.069316e-50
MsG0280011234.01	MsG0380012073.01	0.830289	3.192816e-55	3.349368e-52
MsG0280011234.01	MsG0380015494.01	0.853947	1.705776e-61	3.748771e-58
MsG0280011234.01	MsG0380016577.01	0.825954	3.535690e-54	3.270601e-51
MsG0280011234.01	MsG0380016622.01	0.803161	3.978687e-49	1.985209e-46
MsG0280011234.01	MsG0380016733.01	0.853545	2.225916e-61	4.826903e-58
MsG0280011234.01	MsG0380017382.01	0.848322	6.597629e-60	1.206205e-56
MsG0280011234.01	MsG0480018084.01	0.851660	7.679842e-61	1.565447e-57
MsG0280011234.01	MsG0480019632.01	0.837587	4.761009e-57	6.212957e-54
MsG0280011234.01	MsG0480020895.01	0.855918	4.568712e-62	1.071766e-58
MsG0280011234.01	MsG0480021159.01	0.912484	1.846845e-83	4.163193e-79
MsG0280011234.01	MsG0480022764.01	0.806118	9.606310e-50	5.171804e-47
MsG0280011234.01	MsG0480022789.01	0.820015	8.574969e-53	6.706132e-50
MsG0280011234.01	MsG0480023093.01	0.828859	7.113430e-55	7.156618e-52
MsG0280011234.01	MsG0480023149.01	0.836680	8.119925e-57	1.030717e-53
MsG0280011234.01	MsG0480023467.01	0.932862	4.496533e-95	3.091804e-90
MsG0280011234.01	MsG0480023771.01	0.841759	3.909725e-58	5.802409e-55
MsG0280011234.01	MsG0480023970.01	0.840001	1.130744e-57	1.589181e-54
MsG0280011234.01	MsG0580024369.01	0.940811	1.231457e-100	1.378299e-95
MsG0280011234.01	MsG0580027043.01	0.830643	2.615859e-55	2.772654e-52
MsG0280011234.01	MsG0580028561.01	0.815020	1.145024e-51	7.804605e-49
MsG0280011234.01	MsG0580029132.01	0.872743	2.514801e-67	1.064196e-63
MsG0280011234.01	MsG0580029702.01	0.903290	4.041163e-79	5.945494e-75
MsG0280011234.01	MsG0580029703.01	0.802688	4.981152e-49	2.455621e-46
MsG0280011234.01	MsG0680031763.01	0.872952	2.140485e-67	9.125265e-64
MsG0280011234.01	MsG0680032770.01	0.852932	3.336596e-61	7.086076e-58
MsG0280011234.01	MsG0680035848.01	0.869156	3.822944e-66	1.420125e-62
MsG0280011234.01	MsG0780036822.01	0.834453	2.970997e-56	3.527506e-53
MsG0280011234.01	MsG0780038587.01	0.879981	7.989114e-70	4.424294e-66
MsG0280011234.01	MsG0780039271.01	0.850212	1.965537e-60	3.821731e-57
MsG0280011234.01	MsG0780039848.01	0.810084	1.374211e-50	8.206753e-48
MsG0280011234.01	MsG0780040511.01	0.862359	5.359248e-64	1.565127e-60
MsG0280011234.01	MsG0780040782.01	0.844973	5.423209e-59	8.904760e-56
MsG0280011234.01	MsG0780041058.01	0.829602	4.696706e-55	4.830085e-52
MsG0280011234.01	MsG0780041147.01	0.941963	1.660990e-101	2.016405e-96
MsG0280011234.01	MsG0780041223.01	0.807505	4.892801e-50	2.730017e-47
MsG0280011234.01	MsG0780041224.01	0.819131	1.364562e-52	1.041118e-49
MsG0280011234.01	MsG0880041967.01	0.838292	3.136025e-57	4.181208e-54
MsG0280011234.01	MsG0880042125.01	0.876654	1.175995e-68	5.747556e-65
MsG0280011234.01	MsG0880043517.01	0.894655	2.009909e-75	2.016813e-71
MsG0280011234.01	MsG0880043770.01	0.899334	2.196301e-77	2.704021e-73
MsG0280011234.01	MsG0880046444.01	0.836589	8.563654e-57	1.084055e-53
MsG0280011234.01	MsG0880046879.01	0.885279	9.327662e-72	6.363345e-68
MsG0280011234.01	MsG0880047082.01	0.810924	9.049271e-51	5.526385e-48
MsG0280006819.01	MsG0280011234.01	0.906005	2.352574e-80	3.907225e-76
MsG0280006836.01	MsG0280011234.01	0.910762	1.302266e-82	2.701193e-78
MsG0280007634.01	MsG0280011234.01	0.848977	4.343991e-60	8.113069e-57
MsG0280007643.01	MsG0280011234.01	0.844523	7.174219e-59	1.161342e-55
MsG0280007995.01	MsG0280011234.01	0.800541	1.373172e-48	6.410527e-46
MsG0280008118.01	MsG0280011234.01	0.805814	1.113064e-49	5.945985e-47
MsG0280009375.01	MsG0280011234.01	0.813949	1.975236e-51	1.307871e-48
MsG0280009591.01	MsG0280011234.01	0.822653	2.110892e-53	1.777754e-50
MsG0280010495.01	MsG0280011234.01	0.874836	4.944251e-68	2.259382e-64
MsG0280010525.01	MsG0280011234.01	0.852092	5.791357e-61	1.196927e-57

PPI

Gene1	Gene2	Type
MsG0880042517.01	MsG0280011234.01	PPI
MsG0280011234.01	MsG0880042517.01	PPI
MsG0280011234.01	MsG0780040704.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011234.01.T01	MTR_2g100410	99.310	145	1	1	145	1	145	6.43e-104	293
MsG0280011234.01.T01	MTR_8g015570	90.909	143	13	1	143	1	143	3.03e-94	268
MsG0280011234.01.T01	MTR_8g015570	91.429	105	9	1	105	1	105	8.15e-69	203

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011234.01.T01	AT4G29410	72.028	143	40	1	143	1	143	1.30e-73	216
MsG0280011234.01.T01	AT4G29410	72.028	143	40	1	143	1	143	1.30e-73	216
MsG0280011234.01.T01	AT2G19730	72.727	143	39	1	143	1	143	9.98e-73	214
MsG0280011234.01.T01	AT2G19730	72.727	143	39	1	143	1	143	9.98e-73	214
MsG0280011234.01.T01	AT2G19730	72.727	143	39	1	143	1	143	9.98e-73	214

Find 45 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTCCAAATCCAAAGCAAATT+AGG	0.196350	2:+81293315	None:intergenic
GATTTATAGCAAAATGAAAT+TGG	0.232438	2:-81293342	None:intergenic
TTAAGATTGTAAAGATTATT+AGG	0.248943	2:-81293626	None:intergenic
ACCCTAATTTGCTTTGGATT+TGG	0.255167	2:-81293317	None:intergenic
CGTCTTATTATACTTTAAAC+TGG	0.279627	2:+81296467	MsG0280011234.01.T01:three_prime_UTR
CAAGGTTGAGTGCTGTTAAT+AGG	0.286054	2:+81296238	MsG0280011234.01.T01:CDS
AGAATGCATAAACTACAAAA+AGG	0.290999	2:-81296370	None:intergenic
CAGTACCTGGACCACTTGTT+TGG	0.329181	2:+81293525	MsG0280011234.01.T01:CDS
TTGGAAACCCTAATTTGCTT+TGG	0.357324	2:-81293323	None:intergenic
TCCAAATCCAAAGCAAATTA+GGG	0.361271	2:+81293316	None:intergenic
ATACTAACCAGAGTATTTGT+AGG	0.368013	2:-81293651	None:intergenic
TAGAATACTGGAGTTCAGTT+TGG	0.380104	2:+81296405	MsG0280011234.01.T01:three_prime_UTR
GAACTCCAGTATTCTAGAAT+AGG	0.383776	2:-81296398	None:intergenic
AGAACCCTATTCTAGAATAC+TGG	0.410113	2:+81296393	MsG0280011234.01.T01:three_prime_UTR
AGCCTCCGAGTTGCAAAGTC+TGG	0.420492	2:+81296261	MsG0280011234.01.T01:CDS
AGTACCTGGACCACTTGTTT+GGG	0.420976	2:+81293526	MsG0280011234.01.T01:CDS
GAGTGAGATTTGAGAAGAAG+AGG	0.422905	2:-81293379	None:intergenic
GGCTAAGGCTGTGCAAAATC+AGG	0.425465	2:+81294359	MsG0280011234.01.T01:CDS
AAGTGAATTGAGAAGAGAGT+TGG	0.449263	2:+81296312	MsG0280011234.01.T01:exon
AACTCCAGTATTCTAGAATA+GGG	0.453784	2:-81296397	None:intergenic
AAGAAGATGGCAACAGTACC+TGG	0.461908	2:+81293512	MsG0280011234.01.T01:exon
CTGTTATGAAGAAAGAGTTC+AGG	0.475739	2:+81294331	MsG0280011234.01.T01:CDS
CAAAGATCAGTCTGTGTTGT+TGG	0.477149	2:+81294257	MsG0280011234.01.T01:CDS
ACTGTAACTATTCAGTCTGC+TGG	0.486689	2:+81294234	MsG0280011234.01.T01:CDS
CTGGCGCTAAGAAGAGAAAC+AGG	0.489005	2:+81296280	MsG0280011234.01.T01:CDS
AATACCTTGGATTGTTGTTG+AGG	0.511851	2:-81293403	None:intergenic
CTTAACTCCTACAAATACTC+TGG	0.532818	2:+81293644	MsG0280011234.01.T01:CDS
GATTTGTGAAGCAAAGCAGC+AGG	0.534387	2:-81294309	None:intergenic
AAGAAGAGAAACAGGCATGC+AGG	0.536717	2:+81296288	MsG0280011234.01.T01:CDS
AGAGTTCAGGAGGATGGCTA+AGG	0.539424	2:+81294344	MsG0280011234.01.T01:CDS
ATCTCCCAAACAAGTGGTCC+AGG	0.541178	2:-81293530	None:intergenic
GTCTTATTATACTTTAAACT+GGG	0.549531	2:+81296468	MsG0280011234.01.T01:three_prime_UTR
CTCTCCTCAACAACAATCCA+AGG	0.551487	2:+81293399	MsG0280011234.01.T01:five_prime_UTR
TTAAGAAGGCGGCTCTTGCA+AGG	0.554765	2:+81296220	MsG0280011234.01.T01:CDS
AGAGCCGCCTTCTTAAGATC+AGG	0.566181	2:-81296213	None:intergenic
CTACAGACCTGATCTTAAGA+AGG	0.570922	2:+81296206	MsG0280011234.01.T01:CDS
TTCACGATCTCCCAAACAAG+TGG	0.590177	2:-81293536	None:intergenic
TAGCGCCAGACTTTGCAACT+CGG	0.593837	2:-81296266	None:intergenic
GAAGAAAGAGTTCAGGAGGA+TGG	0.603864	2:+81294338	MsG0280011234.01.T01:CDS
CGCCAGACTTTGCAACTCGG+AGG	0.606941	2:-81296263	None:intergenic
TGTTGGCAACCACCAAGCCA+AGG	0.638986	2:+81294274	MsG0280011234.01.T01:CDS
TTATGAAGAAAGAGTTCAGG+AGG	0.639998	2:+81294334	MsG0280011234.01.T01:CDS
CAGTTTAAAGTATAATAAGA+CGG	0.646637	2:-81296466	None:intergenic
TTGTTTGGGAGATCGTGAAG+AGG	0.651216	2:+81293540	MsG0280011234.01.T01:CDS
CAGACCTGATCTTAAGAAGG+CGG	0.695458	2:+81296209	MsG0280011234.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTTCTAATTCAAAATAATT+TGG	-	Chr2:81294600-81294619	None:intergenic	10.0%
!!!	AAAATAATTTTGTAACTATA+TGG	+	Chr2:81295537-81295556	MsG0280011234.01.T01:intron	10.0%
!!!	ACAAATTATTTTAGAATAAT+TGG	+	Chr2:81296032-81296051	MsG0280011234.01.T01:intron	10.0%
!!!	ATAATAGTTTTATGATTAAT+GGG	+	Chr2:81293694-81293713	MsG0280011234.01.T01:intron	10.0%
!!!	ATTATTCTAAAATAATTTGT+TGG	-	Chr2:81296032-81296051	None:intergenic	10.0%
!!!	TAGCAATTTTAATTTTTTTT+TGG	+	Chr2:81294154-81294173	MsG0280011234.01.T01:intron	10.0%
!!!	TATAATAGTTTTATGATTAA+TGG	+	Chr2:81293693-81293712	MsG0280011234.01.T01:intron	10.0%
!!!	TTAATTGAAATCATTTTAAA+CGG	+	Chr2:81295004-81295023	MsG0280011234.01.T01:intron	10.0%
!!!	TTATTCTAAAATAATTTGTT+GGG	-	Chr2:81296031-81296050	None:intergenic	10.0%
!!	AAACAAATAGATAATTTGAA+TGG	-	Chr2:81294986-81295005	None:intergenic	15.0%
!!	AAACTTGAATTAAAAAATCA+AGG	-	Chr2:81295950-81295969	None:intergenic	15.0%
!!	AACAAATAGATAATTTGAAT+GGG	-	Chr2:81294985-81295004	None:intergenic	15.0%
!!	TAGTTCAAAAATAAAACATT+TGG	+	Chr2:81294692-81294711	MsG0280011234.01.T01:intron	15.0%
!!	TTAAGATTGTAAAGATTATT+AGG	-	Chr2:81293629-81293648	None:intergenic	15.0%
!!!	AAACTATTTTGAATTATAAG+AGG	-	Chr2:81295406-81295425	None:intergenic	15.0%
!!!	TGTTTTTATTATGGTATAAT+AGG	+	Chr2:81294195-81294214	MsG0280011234.01.T01:intron	15.0%
!!!	TTTTTTTTTATATTCTGTGA+TGG	+	Chr2:81293735-81293754	MsG0280011234.01.T01:intron	15.0%
!!	AAATTATGAAGAGATCAAAA+GGG	-	Chr2:81295693-81295712	None:intergenic	20.0%
!!	ACAATAAACAAGAGATAAAA+AGG	-	Chr2:81295444-81295463	None:intergenic	20.0%
!!	ATAAAAAGGTTAGATTCATT+AGG	-	Chr2:81295430-81295449	None:intergenic	20.0%
!!	ATCACATTTGATTAAAACTT+AGG	-	Chr2:81294043-81294062	None:intergenic	20.0%
!!	GATTTATAGCAAAATGAAAT+TGG	-	Chr2:81293345-81293364	None:intergenic	20.0%
!!	TAAATTATGAAGAGATCAAA+AGG	-	Chr2:81295694-81295713	None:intergenic	20.0%
!!	TTAGAAATATTCACGATAAT+TGG	+	Chr2:81294612-81294631	MsG0280011234.01.T01:intron	20.0%
!!	TTATTATGGTATAATAGGTT+TGG	+	Chr2:81294200-81294219	MsG0280011234.01.T01:intron	20.0%
!!	TTTGCATCTTAAAGTATAAT+GGG	+	Chr2:81293801-81293820	MsG0280011234.01.T01:intron	20.0%
!!!	AATTTATGTTATTTGTCTGA+GGG	+	Chr2:81295708-81295727	MsG0280011234.01.T01:intron	20.0%
!!!	AGTTGAAAATTGTTTTGAAT+TGG	+	Chr2:81294568-81294587	MsG0280011234.01.T01:intron	20.0%
!!!	CAGTTTAAAGTATAATAAGA+CGG	-	Chr2:81296469-81296488	None:intergenic	20.0%
!!!	CTTACTTCATGTTTTTATTA+TGG	+	Chr2:81294186-81294205	MsG0280011234.01.T01:intron	20.0%
!!!	GTCTTATTATACTTTAAACT+GGG	+	Chr2:81296468-81296487	MsG0280011234.01.T01:three_prime_UTR	20.0%
!!!	GTTTTATTTTTGAACTAATC+CGG	-	Chr2:81294689-81294708	None:intergenic	20.0%
!!!	TAATTTATGTTATTTGTCTG+AGG	+	Chr2:81295707-81295726	MsG0280011234.01.T01:intron	20.0%
!!!	TTATCTTTGATTTTCAGATT+TGG	+	Chr2:81293447-81293466	MsG0280011234.01.T01:intron	20.0%
!!!	TTTTGCATCTTAAAGTATAA+TGG	+	Chr2:81293800-81293819	MsG0280011234.01.T01:intron	20.0%
!	AAAATTCGAACAAAGAAAGA+GGG	-	Chr2:81294768-81294787	None:intergenic	25.0%
!	AGAATGCATAAACTACAAAA+AGG	-	Chr2:81296373-81296392	None:intergenic	25.0%
!	ATTCATATAGTTGTCATTCT+AGG	+	Chr2:81294507-81294526	MsG0280011234.01.T01:intron	25.0%
!	ATTTACACAGATAAATCACA+TGG	-	Chr2:81295214-81295233	None:intergenic	25.0%
!	GAATGCATAAACTACAAAAA+GGG	-	Chr2:81296372-81296391	None:intergenic	25.0%
!	GGATTCTTCTTATATGTTAA+CGG	-	Chr2:81295589-81295608	None:intergenic	25.0%
!	TAAATGCAAAATAGCATATG+AGG	-	Chr2:81295762-81295781	None:intergenic	25.0%
!	TAAGCATTTATTATACTGCT+TGG	-	Chr2:81293996-81294015	None:intergenic	25.0%
!	TCAAATTAGCTCATAGATTA+AGG	-	Chr2:81296146-81296165	None:intergenic	25.0%
!	TGAAATATTATTGTTACGCT+TGG	+	Chr2:81294842-81294861	MsG0280011234.01.T01:intron	25.0%
!	TTGAATTATAAGAGGTCAAT+AGG	-	Chr2:81295398-81295417	None:intergenic	25.0%
!!	AATAGTTACAGTTTTCTTGT+TGG	-	Chr2:81294226-81294245	None:intergenic	25.0%
!!	AGTTTAAAGTTACAAAAGAG+AGG	-	Chr2:81294947-81294966	None:intergenic	25.0%
!!	ATTTATGTTATTTGTCTGAG+GGG	+	Chr2:81295709-81295728	MsG0280011234.01.T01:intron	25.0%
!!	ATTTTGTAACTATATGGACT+AGG	+	Chr2:81295543-81295562	MsG0280011234.01.T01:intron	25.0%
!!	CGTCTTATTATACTTTAAAC+TGG	+	Chr2:81296467-81296486	MsG0280011234.01.T01:three_prime_UTR	25.0%
!!	GTTTTCATGTTTCACAATAT+TGG	+	Chr2:81294472-81294491	MsG0280011234.01.T01:intron	25.0%
!!!	AAGTTTTTATTTAGAGAAGC+TGG	+	Chr2:81295964-81295983	MsG0280011234.01.T01:intron	25.0%
!!!	ATTTTCGTTTTGTGCTTTTT+AGG	+	Chr2:81293423-81293442	MsG0280011234.01.T01:intron	25.0%
!!!	GAAAATTGTTTTGAATTGGT+TGG	+	Chr2:81294572-81294591	MsG0280011234.01.T01:intron	25.0%
!!!	TCTTTTTTGGTTAAAGAGTT+TGG	+	Chr2:81293569-81293588	MsG0280011234.01.T01:CDS	25.0%
!!!	TTTTCGTTTTGTGCTTTTTA+GGG	+	Chr2:81293424-81293443	MsG0280011234.01.T01:intron	25.0%
	AAATTCGAACAAAGAAAGAG+GGG	-	Chr2:81294767-81294786	None:intergenic	30.0%
	AGATAAATCACATGGCAATA+AGG	-	Chr2:81295206-81295225	None:intergenic	30.0%
	ATAATTTGAATGGGAACGTA+AGG	-	Chr2:81294976-81294995	None:intergenic	30.0%
	ATATAAGAAGAATCCCTATG+TGG	+	Chr2:81295594-81295613	MsG0280011234.01.T01:intron	30.0%
	ATATAAGATGAATCCCTATG+TGG	+	Chr2:81295297-81295316	MsG0280011234.01.T01:intron	30.0%
	ATTTACACAGATAAATCGCA+TGG	-	Chr2:81295516-81295535	None:intergenic	30.0%
	CTTGTTGAAATTAGTGAAGT+TGG	+	Chr2:81294077-81294096	MsG0280011234.01.T01:intron	30.0%
	GAAAATTCGAACAAAGAAAG+AGG	-	Chr2:81294769-81294788	None:intergenic	30.0%
	GGATTCATCTTATATGTTAG+AGG	-	Chr2:81295292-81295311	None:intergenic	30.0%
	TAATTTGAATGGGAACGTAA+GGG	-	Chr2:81294975-81294994	None:intergenic	30.0%
	TATAAGAAGAATCCCTATGT+GGG	+	Chr2:81295595-81295614	MsG0280011234.01.T01:intron	30.0%
	TATAAGATGAATCCCTATGT+GGG	+	Chr2:81295298-81295317	MsG0280011234.01.T01:intron	30.0%
!	AGTCATTTGCTGCAAAATAA+AGG	-	Chr2:81295995-81296014	None:intergenic	30.0%
!	ATACTAACCAGAGTATTTGT+AGG	-	Chr2:81293654-81293673	None:intergenic	30.0%
!	GTTGGAAAATTTTGCTAAGT+TGG	+	Chr2:81294447-81294466	MsG0280011234.01.T01:intron	30.0%
!	TGAAATTTACTTGTTACGCT+TGG	+	Chr2:81295330-81295349	MsG0280011234.01.T01:intron	30.0%
!!	AACTCCAGTATTCTAGAATA+GGG	-	Chr2:81296400-81296419	None:intergenic	30.0%
!!	CATTTTAATGGAAATACTGC+CGG	+	Chr2:81294667-81294686	MsG0280011234.01.T01:intron	30.0%
!!	GTTGTTTCAGTGCATTTTAA+TGG	+	Chr2:81294655-81294674	MsG0280011234.01.T01:intron	30.0%
!!!	ATGGCTGTTTTTGTTGTTAA+AGG	+	Chr2:81293754-81293773	MsG0280011234.01.T01:intron	30.0%
!!!	TGGCTGTTTTTGTTGTTAAA+GGG	+	Chr2:81293755-81293774	MsG0280011234.01.T01:intron	30.0%
	AAGTGAATTGAGAAGAGAGT+TGG	+	Chr2:81296312-81296331	MsG0280011234.01.T01:exon	35.0%
	ACCAGATCACCAGAAAAAAA+AGG	-	Chr2:81295180-81295199	None:intergenic	35.0%
	AGCACAAAACGAAAATACCT+TGG	-	Chr2:81293419-81293438	None:intergenic	35.0%
	ATAAAACATTTGGAAACGCG+TGG	+	Chr2:81294702-81294721	MsG0280011234.01.T01:intron	35.0%
	ATCTAGTCAAATCTACTGCT+AGG	+	Chr2:81294538-81294557	MsG0280011234.01.T01:intron	35.0%
	CACTGAATAAACCCAACAAA+TGG	-	Chr2:81294824-81294843	None:intergenic	35.0%
	CCAGATCACCAGAAAAAAAA+GGG	-	Chr2:81295179-81295198	None:intergenic	35.0%
	CTAGATCTGTGTTGTGTTAT+AGG	+	Chr2:81293477-81293496	MsG0280011234.01.T01:intron	35.0%
	CTATGAAACCATCATACACA+TGG	-	Chr2:81294134-81294153	None:intergenic	35.0%
	CTGTTATGAAGAAAGAGTTC+AGG	+	Chr2:81294331-81294350	MsG0280011234.01.T01:CDS	35.0%
	CTTAACTCCTACAAATACTC+TGG	+	Chr2:81293644-81293663	MsG0280011234.01.T01:CDS	35.0%
	GCATTCAATCATATTAGCAG+TGG	-	Chr2:81295816-81295835	None:intergenic	35.0%
	GTTAGAAGGATCCATTTGTT+GGG	+	Chr2:81294810-81294829	MsG0280011234.01.T01:intron	35.0%
	GTTGAAGAAGAAGAAGAAGA+TGG	+	Chr2:81293499-81293518	MsG0280011234.01.T01:exon	35.0%
	TAAATCGCATGGTAGCAATT+AGG	-	Chr2:81295505-81295524	None:intergenic	35.0%
	TAGAATACTGGAGTTCAGTT+TGG	+	Chr2:81296405-81296424	MsG0280011234.01.T01:three_prime_UTR	35.0%
	TATGATTGAATGCTTCCCAT+CGG	+	Chr2:81295823-81295842	MsG0280011234.01.T01:intron	35.0%
	TCATTGAAGAAACCCACATA+GGG	-	Chr2:81295313-81295332	None:intergenic	35.0%
	TCCACACAAAGAACAAGAAT+CGG	-	Chr2:81294420-81294439	None:intergenic	35.0%
	TGTTAATGCCATGTGTATGA+TGG	+	Chr2:81294123-81294142	MsG0280011234.01.T01:intron	35.0%
	TGTTCTTTGTGTGGAATTAG+TGG	+	Chr2:81294425-81294444	MsG0280011234.01.T01:intron	35.0%
	TGTTGTTAAAGGGTTCTGTT+TGG	+	Chr2:81293765-81293784	MsG0280011234.01.T01:intron	35.0%
	TTATGAAGAAAGAGTTCAGG+AGG	+	Chr2:81294334-81294353	MsG0280011234.01.T01:CDS	35.0%
	TTCAATCATATTAGCAGTGG+TGG	-	Chr2:81295813-81295832	None:intergenic	35.0%
	TTCATTGAAGAAACCCACAT+AGG	-	Chr2:81295314-81295333	None:intergenic	35.0%
!	AACCTGGTCTCTATTTTATC+TGG	+	Chr2:81295467-81295486	MsG0280011234.01.T01:intron	35.0%
!	AATACCTTGGATTGTTGTTG+AGG	-	Chr2:81293406-81293425	None:intergenic	35.0%
!	TTGCGTTTTCAATACAAGAC+TGG	+	Chr2:81296439-81296458	MsG0280011234.01.T01:three_prime_UTR	35.0%
!!	ACCCTAATTTGCTTTGGATT+TGG	-	Chr2:81293320-81293339	None:intergenic	35.0%
!!	AGAACCCTATTCTAGAATAC+TGG	+	Chr2:81296393-81296412	MsG0280011234.01.T01:three_prime_UTR	35.0%
!!	ATAATTTGTTGGGCAGCATT+TGG	-	Chr2:81296021-81296040	None:intergenic	35.0%
!!	GAACTCCAGTATTCTAGAAT+AGG	-	Chr2:81296401-81296420	None:intergenic	35.0%
!!	TAATTTGTTGGGCAGCATTT+GGG	-	Chr2:81296020-81296039	None:intergenic	35.0%
!!	TTGGAAACCCTAATTTGCTT+TGG	-	Chr2:81293326-81293345	None:intergenic	35.0%
!!	TTTTGTTTATTGTGCGAACC+TGG	+	Chr2:81295150-81295169	MsG0280011234.01.T01:intron	35.0%
!!!	GAAGAGGAACAACTCTTTTT+TGG	+	Chr2:81293556-81293575	MsG0280011234.01.T01:CDS	35.0%
	AAATGGATCCTTCTAACGTG+TGG	-	Chr2:81294807-81294826	None:intergenic	40.0%
	AACACGTAAGAAGGTTCCTT+TGG	+	Chr2:81295858-81295877	MsG0280011234.01.T01:intron	40.0%
	AATGGATCCTTCTAACGTGT+GGG	-	Chr2:81294806-81294825	None:intergenic	40.0%
	ACGTAAGAAGAATCCTATGC+GGG	+	Chr2:81295065-81295084	MsG0280011234.01.T01:intron	40.0%
	ACTGTAACTATTCAGTCTGC+TGG	+	Chr2:81294234-81294253	MsG0280011234.01.T01:CDS	40.0%
	ATTCAACTAGTGTTACCCAG+CGG	+	Chr2:81295027-81295046	MsG0280011234.01.T01:intron	40.0%
	CAAAGAAAGAGGGGTTCAAA+TGG	-	Chr2:81294758-81294777	None:intergenic	40.0%
	CAAAGATCAGTCTGTGTTGT+TGG	+	Chr2:81294257-81294276	MsG0280011234.01.T01:CDS	40.0%
	CACCAGATAAAATAGAGACC+AGG	-	Chr2:81295472-81295491	None:intergenic	40.0%
	CACGTAAGAAGAATCCTATG+CGG	+	Chr2:81295064-81295083	MsG0280011234.01.T01:intron	40.0%
	CCACACAAAGAACAAGAATC+GGG	-	Chr2:81294419-81294438	None:intergenic	40.0%
	CGTTAGAAGGATCCATTTGT+TGG	+	Chr2:81294809-81294828	MsG0280011234.01.T01:intron	40.0%
	CTACAGACCTGATCTTAAGA+AGG	+	Chr2:81296206-81296225	MsG0280011234.01.T01:CDS	40.0%
	CTTTGTGTGGAATTAGTGGT+TGG	+	Chr2:81294429-81294448	MsG0280011234.01.T01:intron	40.0%
	GAGTGAGATTTGAGAAGAAG+AGG	-	Chr2:81293382-81293401	None:intergenic	40.0%
	TAGTAGTTATCTGCAACCTG+AGG	-	Chr2:81296189-81296208	None:intergenic	40.0%
	TCATTGAAGAAACCCACCAA+AGG	-	Chr2:81295877-81295896	None:intergenic	40.0%
	TGAGCTGTTAACACGTAAGA+AGG	+	Chr2:81295849-81295868	MsG0280011234.01.T01:intron	40.0%
!	AAAGAGAGGCACGCTATTAA+CGG	-	Chr2:81294933-81294952	None:intergenic	40.0%
!	CAAGGTTGAGTGCTGTTAAT+AGG	+	Chr2:81296238-81296257	MsG0280011234.01.T01:CDS	40.0%
!	TCTTGTTTATTGTGCGAACC+TGG	+	Chr2:81295451-81295470	MsG0280011234.01.T01:intron	40.0%
!!!	CCCTTTTTTTTCTGGTGATC+TGG	+	Chr2:81295176-81295195	MsG0280011234.01.T01:intron	40.0%
	AAGAAGAGAAACAGGCATGC+AGG	+	Chr2:81296288-81296307	MsG0280011234.01.T01:CDS	45.0%
	AAGAAGATGGCAACAGTACC+TGG	+	Chr2:81293512-81293531	MsG0280011234.01.T01:exon	45.0%
	ACACCAAATCTAACTGGCAG+AGG	-	Chr2:81295252-81295271	None:intergenic	45.0%
	ACGTAAGAAGGTTCCTTTGG+TGG	+	Chr2:81295861-81295880	MsG0280011234.01.T01:intron	45.0%
	AGTACCTGGACCACTTGTTT+GGG	+	Chr2:81293526-81293545	MsG0280011234.01.T01:CDS	45.0%
	CAGACCTGATCTTAAGAAGG+CGG	+	Chr2:81296209-81296228	MsG0280011234.01.T01:CDS	45.0%
	CCAGAAAAAAAAGGGATGCC+AGG	-	Chr2:81295171-81295190	None:intergenic	45.0%
	CCCGATTCTTGTTCTTTGTG+TGG	+	Chr2:81294416-81294435	MsG0280011234.01.T01:intron	45.0%
	CGTAAGAAGGTTCCTTTGGT+GGG	+	Chr2:81295862-81295881	MsG0280011234.01.T01:intron	45.0%
	CTCTCCTCAACAACAATCCA+AGG	+	Chr2:81293399-81293418	MsG0280011234.01.T01:five_prime_UTR	45.0%
	GAAGAAAGAGTTCAGGAGGA+TGG	+	Chr2:81294338-81294357	MsG0280011234.01.T01:CDS	45.0%
	GATTTGTGAAGCAAAGCAGC+AGG	-	Chr2:81294312-81294331	None:intergenic	45.0%
	GTTAACAGCTCATCACCGAT+GGG	-	Chr2:81295841-81295860	None:intergenic	45.0%
	GTTAATAGCTCATCACCGCT+GGG	-	Chr2:81295045-81295064	None:intergenic	45.0%
	TGGGGAACACCAAATCTAAC+TGG	-	Chr2:81295258-81295277	None:intergenic	45.0%
	TGTTAACAGCTCATCACCGA+TGG	-	Chr2:81295842-81295861	None:intergenic	45.0%
	TGTTAATAGCTCATCACCGC+TGG	-	Chr2:81295046-81295065	None:intergenic	45.0%
	TTCACGATCTCCCAAACAAG+TGG	-	Chr2:81293539-81293558	None:intergenic	45.0%
	TTCATTGAAGAAGCCCGCAT+AGG	-	Chr2:81295081-81295100	None:intergenic	45.0%
	TTGTTTGGGAGATCGTGAAG+AGG	+	Chr2:81293540-81293559	MsG0280011234.01.T01:CDS	45.0%
!!!	CCTGGCATCCCTTTTTTTTC+TGG	+	Chr2:81295168-81295187	MsG0280011234.01.T01:intron	45.0%
!!!	CTTGTTTTGCTTCCTTGGCT+TGG	-	Chr2:81294289-81294308	None:intergenic	45.0%
	AGAGCCGCCTTCTTAAGATC+AGG	-	Chr2:81296216-81296235	None:intergenic	50.0%
	AGAGTTCAGGAGGATGGCTA+AGG	+	Chr2:81294344-81294363	MsG0280011234.01.T01:CDS	50.0%
	ATCTCCCAAACAAGTGGTCC+AGG	-	Chr2:81293533-81293552	None:intergenic	50.0%
	CAGTACCTGGACCACTTGTT+TGG	+	Chr2:81293525-81293544	MsG0280011234.01.T01:CDS	50.0%
	CTGGCGCTAAGAAGAGAAAC+AGG	+	Chr2:81296280-81296299	MsG0280011234.01.T01:CDS	50.0%
	GCACCTCTGCCAGTTAGATT+TGG	+	Chr2:81295246-81295265	MsG0280011234.01.T01:intron	50.0%
	GCTATTAACGGTGCAGGCAA+AGG	-	Chr2:81294921-81294940	None:intergenic	50.0%
	GGCTAAGGCTGTGCAAAATC+AGG	+	Chr2:81294359-81294378	MsG0280011234.01.T01:CDS	50.0%
	GTTAACGGCTCATCACTGCT+GGG	-	Chr2:81295574-81295593	None:intergenic	50.0%
	GTTAGAGGCTCATCACTGCT+GGG	-	Chr2:81295277-81295296	None:intergenic	50.0%
	TAGCGCCAGACTTTGCAACT+CGG	-	Chr2:81296269-81296288	None:intergenic	50.0%
	TGATGAGCCCACACGTTAGA+AGG	+	Chr2:81294796-81294815	MsG0280011234.01.T01:intron	50.0%
	TGCAGGCAAAGGAGATCAGA+AGG	-	Chr2:81294910-81294929	None:intergenic	50.0%
	TGTTAACGGCTCATCACTGC+TGG	-	Chr2:81295575-81295594	None:intergenic	50.0%
	TGTTAGAGGCTCATCACTGC+TGG	-	Chr2:81295278-81295297	None:intergenic	50.0%
	TTAACGGCTCATCACTGCTG+GGG	-	Chr2:81295573-81295592	None:intergenic	50.0%
	TTAAGAAGGCGGCTCTTGCA+AGG	+	Chr2:81296220-81296239	MsG0280011234.01.T01:CDS	50.0%
	TTAGAGGCTCATCACTGCTG+GGG	-	Chr2:81295276-81295295	None:intergenic	50.0%
!!!	GCAGGCTTGTTTTGCTTCCT+TGG	-	Chr2:81294294-81294313	None:intergenic	50.0%
!!!	GTTTTGCTTCCTTGGCTTGG+TGG	-	Chr2:81294286-81294305	None:intergenic	50.0%
	AGCCTCCGAGTTGCAAAGTC+TGG	+	Chr2:81296261-81296280	MsG0280011234.01.T01:CDS	55.0%
	AGGCACGCTATTAACGGTGC+AGG	-	Chr2:81294927-81294946	None:intergenic	55.0%
	CGTGTGGGCTCATCACAACA+AGG	-	Chr2:81294791-81294810	None:intergenic	55.0%
	TGTTGGCAACCACCAAGCCA+AGG	+	Chr2:81294274-81294293	MsG0280011234.01.T01:CDS	55.0%
	TTGCGTGTGTGATGTGCCTC+AGG	+	Chr2:81296170-81296189	MsG0280011234.01.T01:intron	55.0%
	CGCCAGACTTTGCAACTCGG+AGG	-	Chr2:81296266-81296285	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	81293317	81296536	81293317	ID=MsG0280011234.01;Name=MsG0280011234.01
Chr2	mRNA	81293317	81296536	81293317	ID=MsG0280011234.01.T01;Parent=MsG0280011234.01;Name=MsG0280011234.01.T01;_AED=0.39;_eAED=0.39;_QI=123\|1\|1\|1\|0.66\|0.75\|4\|219\|145
Chr2	exon	81293317	81293420	81293317	ID=MsG0280011234.01.T01:exon:12009;Parent=MsG0280011234.01.T01
Chr2	exon	81293499	81293665	81293499	ID=MsG0280011234.01.T01:exon:12010;Parent=MsG0280011234.01.T01
Chr2	exon	81294217	81294380	81294217	ID=MsG0280011234.01.T01:exon:12011;Parent=MsG0280011234.01.T01
Chr2	exon	81296192	81296536	81296192	ID=MsG0280011234.01.T01:exon:12012;Parent=MsG0280011234.01.T01
Chr2	five_prime_UTR	81293317	81293420	81293317	ID=MsG0280011234.01.T01:five_prime_utr;Parent=MsG0280011234.01.T01
Chr2	five_prime_UTR	81293499	81293517	81293499	ID=MsG0280011234.01.T01:five_prime_utr;Parent=MsG0280011234.01.T01
Chr2	CDS	81293518	81293665	81293518	ID=MsG0280011234.01.T01:cds;Parent=MsG0280011234.01.T01
Chr2	CDS	81294217	81294380	81294217	ID=MsG0280011234.01.T01:cds;Parent=MsG0280011234.01.T01
Chr2	CDS	81296192	81296317	81296192	ID=MsG0280011234.01.T01:cds;Parent=MsG0280011234.01.T01
Chr2	three_prime_UTR	81296318	81296536	81296318	ID=MsG0280011234.01.T01:three_prime_utr;Parent=MsG0280011234.01.T01

Gene Sequence

>MsG0280011234.01.T01

ATGGCAACAGTACCTGGACCACTTGTTTGGGAGATCGTGAAGAGGAACAACTCTTTTTTGGTTAAAGAGTTTGGAAATAACACTCAGAGTGTTCAGTTCAGCAGAGAACCTAATAATCTTTACAATCTTAACTCCTACAAATACTCTGGTTTGGCCAACAAGAAAACTGTAACTATTCAGTCTGCTGGCAAAGATCAGTCTGTGTTGTTGGCAACCACCAAGCCAAGGAAGCAAAACAAGCCTGCTGCTTTGCTTCACAAATCTGTTATGAAGAAAGAGTTCAGGAGGATGGCTAAGGCTGTGCAAAATCAGGTTGCAGATAACTACTACAGACCTGATCTTAAGAAGGCGGCTCTTGCAAGGTTGAGTGCTGTTAATAGGAGCCTCCGAGTTGCAAAGTCTGGCGCTAAGAAGAGAAACAGGCATGCAGGAAAGTGA

Protein sequence

>MsG0280011234.01.T01

MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPNNLYNLNSYKYSGLANKKTVTIQSAGKDQSVLLATTKPRKQNKPAALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLRVAKSGAKKRNRHAGK*