Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020895.01.T01 | XP_013468295.1 | 93.443 | 122 | 8 | 0 | 1 | 122 | 1 | 122 | 5.25E-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020895.01.T01 | Q9M5L0 | 90.756 | 119 | 11 | 0 | 3 | 121 | 4 | 122 | 1.87E-70 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020895.01.T01 | I3T617 | 93.443 | 122 | 8 | 0 | 1 | 122 | 1 | 122 | 2.51e-72 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048922.01 | MsG0480020895.01 | 0.835572 | 1.552408e-56 | 1.905880e-53 |
| MsG0180003313.01 | MsG0480020895.01 | 0.875221 | 3.656683e-68 | 1.694233e-64 |
| MsG0180003585.01 | MsG0480020895.01 | 0.816867 | 4.430772e-52 | 3.176761e-49 |
| MsG0180003897.01 | MsG0480020895.01 | 0.859310 | 4.519253e-63 | 1.188290e-59 |
| MsG0180004607.01 | MsG0480020895.01 | 0.804894 | 1.735264e-49 | 9.053924e-47 |
| MsG0180004609.01 | MsG0480020895.01 | 0.833931 | 4.017199e-56 | 4.695615e-53 |
| MsG0180004625.01 | MsG0480020895.01 | 0.837903 | 3.949450e-57 | 5.204067e-54 |
| MsG0180005361.01 | MsG0480020895.01 | 0.858674 | 7.005973e-63 | 1.802322e-59 |
| MsG0180005366.01 | MsG0480020895.01 | 0.840805 | 6.970659e-58 | 1.004316e-54 |
| MsG0180005384.01 | MsG0480020895.01 | 0.800473 | 1.417702e-48 | 6.606865e-46 |
| MsG0180005573.01 | MsG0480020895.01 | 0.868068 | 8.591219e-66 | 3.066870e-62 |
| MsG0280010995.01 | MsG0480020895.01 | 0.808215 | 3.455522e-50 | 1.964299e-47 |
| MsG0280011060.01 | MsG0480020895.01 | 0.865838 | 4.417558e-65 | 1.457811e-61 |
| MsG0280011234.01 | MsG0480020895.01 | 0.855918 | 4.568712e-62 | 1.071766e-58 |
| MsG0280011308.01 | MsG0480020895.01 | 0.815128 | 1.083353e-51 | 7.405661e-49 |
| MsG0380011643.01 | MsG0480020895.01 | 0.840485 | 8.453846e-58 | 1.205929e-54 |
| MsG0480019165.01 | MsG0480020895.01 | 0.882431 | 1.047895e-70 | 6.380488e-67 |
| MsG0480019632.01 | MsG0480020895.01 | 0.901997 | 1.520461e-78 | 2.108115e-74 |
| MsG0480020895.01 | MsG0480020911.01 | 0.857976 | 1.130517e-62 | 2.841128e-59 |
| MsG0480020895.01 | MsG0480021279.01 | 0.866175 | 3.454565e-65 | 1.153542e-61 |
| MsG0480020895.01 | MsG0480021417.01 | 0.854795 | 9.703440e-62 | 2.193106e-58 |
| MsG0480020895.01 | MsG0480022363.01 | 0.898912 | 3.330343e-77 | 4.020633e-73 |
| MsG0480020895.01 | MsG0480022789.01 | 0.862448 | 5.030529e-64 | 1.473894e-60 |
| MsG0480020895.01 | MsG0480023380.01 | 0.810794 | 9.653643e-51 | 5.874786e-48 |
| MsG0480020895.01 | MsG0480023467.01 | 0.874634 | 5.795411e-68 | 2.627760e-64 |
| MsG0480020895.01 | MsG0480023770.01 | 0.848083 | 7.682295e-60 | 1.393494e-56 |
| MsG0480020895.01 | MsG0480023774.01 | 0.849874 | 2.443282e-60 | 4.698238e-57 |
| MsG0480020895.01 | MsG0480023931.01 | 0.842091 | 3.195610e-58 | 4.792795e-55 |
| MsG0480020895.01 | MsG0480023970.01 | 0.874524 | 6.314097e-68 | 2.851077e-64 |
| MsG0480020895.01 | MsG0580024369.01 | 0.845177 | 4.776834e-59 | 7.893862e-56 |
| MsG0480020895.01 | MsG0580024481.01 | 0.815243 | 1.021669e-51 | 7.005764e-49 |
| MsG0480020895.01 | MsG0580024540.01 | 0.831652 | 1.478322e-55 | 1.614458e-52 |
| MsG0480020895.01 | MsG0580024738.01 | 0.841059 | 5.977407e-58 | 8.678969e-55 |
| MsG0480020895.01 | MsG0580025750.01 | 0.882317 | 1.152653e-70 | 6.989612e-67 |
| MsG0480020895.01 | MsG0580029702.01 | 0.884358 | 2.053246e-71 | 1.350438e-67 |
| MsG0480020895.01 | MsG0580029703.01 | 0.849550 | 3.008636e-60 | 5.723750e-57 |
| MsG0480020895.01 | MsG0580030073.01 | 0.855192 | 7.439810e-62 | 1.703458e-58 |
| MsG0480020895.01 | MsG0680031763.01 | 0.856332 | 3.454895e-62 | 8.217235e-59 |
| MsG0480020895.01 | MsG0680035611.01 | 0.854882 | 9.156283e-62 | 2.075112e-58 |
| MsG0480020895.01 | MsG0780036822.01 | 0.814537 | 1.464555e-51 | 9.853549e-49 |
| MsG0480020895.01 | MsG0780036877.01 | 0.800180 | 1.626773e-48 | 7.524996e-46 |
| MsG0480020895.01 | MsG0780037097.01 | 0.834623 | 2.692664e-56 | 3.213127e-53 |
| MsG0480020895.01 | MsG0780038383.01 | 0.850841 | 1.307874e-60 | 2.596133e-57 |
| MsG0480020895.01 | MsG0780039271.01 | 0.842922 | 1.923511e-58 | 2.960514e-55 |
| MsG0480020895.01 | MsG0780040782.01 | 0.814309 | 1.644797e-51 | 1.099863e-48 |
| MsG0480020895.01 | MsG0780041058.01 | 0.886816 | 2.459303e-72 | 1.783628e-68 |
| MsG0480020895.01 | MsG0780041147.01 | 0.884064 | 2.636646e-71 | 1.714358e-67 |
| MsG0480020895.01 | MsG0780041240.01 | 0.804749 | 1.860469e-49 | 9.670516e-47 |
| MsG0480020895.01 | MsG0780041244.01 | 0.827852 | 1.244080e-54 | 1.215645e-51 |
| MsG0480020895.01 | MsG0780041332.01 | 0.839665 | 1.383380e-57 | 1.923651e-54 |
| MsG0480020895.01 | MsG0780041461.01 | 0.877218 | 7.494826e-69 | 3.739012e-65 |
| MsG0480020895.01 | MsG0780041522.01 | 0.891840 | 2.749305e-74 | 2.450285e-70 |
| MsG0480020895.01 | MsG0780041790.01 | 0.827623 | 1.412300e-54 | 1.370617e-51 |
| MsG0480020895.01 | MsG0880041941.01 | 0.814780 | 1.293840e-51 | 8.761884e-49 |
| MsG0480020895.01 | MsG0880042125.01 | 0.849603 | 2.908113e-60 | 5.542406e-57 |
| MsG0480020895.01 | MsG0880042517.01 | 0.849594 | 2.924633e-60 | 5.572142e-57 |
| MsG0480020895.01 | MsG0880043076.01 | 0.827869 | 1.232852e-54 | 1.205228e-51 |
| MsG0480020895.01 | MsG0880043517.01 | 0.913052 | 9.614216e-84 | 2.230567e-79 |
| MsG0480020895.01 | MsG0880044003.01 | 0.821485 | 3.938258e-53 | 3.208177e-50 |
| MsG0480020895.01 | MsG0880046220.01 | 0.830472 | 2.880932e-55 | 3.038130e-52 |
| MsG0480020895.01 | MsG0880046486.01 | 0.803576 | 3.263180e-49 | 1.645751e-46 |
| MsG0480020895.01 | MsG0880046879.01 | 0.849025 | 4.213003e-60 | 7.881332e-57 |
| MsG0480020895.01 | MsG0880047082.01 | 0.856298 | 3.535157e-62 | 8.397469e-59 |
| MsG0480020895.01 | MsG0880047310.01 | 0.831850 | 1.321287e-55 | 1.451607e-52 |
| MsG0380015494.01 | MsG0480020895.01 | 0.888961 | 3.708025e-73 | 2.934459e-69 |
| MsG0380015857.01 | MsG0480020895.01 | 0.802550 | 5.319930e-49 | 2.613347e-46 |
| MsG0380016577.01 | MsG0480020895.01 | 0.854898 | 9.056665e-62 | 2.053535e-58 |
| MsG0380016622.01 | MsG0480020895.01 | 0.836422 | 9.447262e-57 | 1.189981e-53 |
| MsG0380016678.01 | MsG0480020895.01 | 0.869208 | 3.678173e-66 | 1.368927e-62 |
| MsG0380016733.01 | MsG0480020895.01 | 0.835147 | 1.987172e-56 | 2.408765e-53 |
| MsG0480018084.01 | MsG0480020895.01 | 0.812828 | 3.482838e-51 | 2.237122e-48 |
| MsG0480018164.01 | MsG0480020895.01 | 0.821422 | 4.072897e-53 | 3.312090e-50 |
| MsG0280006629.01 | MsG0480020895.01 | 0.880194 | 6.708328e-70 | 3.744534e-66 |
| MsG0280006664.01 | MsG0480020895.01 | 0.818342 | 2.060548e-52 | 1.538423e-49 |
| MsG0280006747.01 | MsG0480020895.01 | 0.835582 | 1.543322e-56 | 1.895304e-53 |
| MsG0280006819.01 | MsG0480020895.01 | 0.850787 | 1.354605e-60 | 2.683973e-57 |
| MsG0280006836.01 | MsG0480020895.01 | 0.830725 | 2.497832e-55 | 2.654024e-52 |
| MsG0280007055.01 | MsG0480020895.01 | 0.850724 | 1.410778e-60 | 2.789344e-57 |
| MsG0280007643.01 | MsG0480020895.01 | 0.861785 | 8.038977e-64 | 2.300966e-60 |
| MsG0280007995.01 | MsG0480020895.01 | 0.905576 | 3.709823e-80 | 6.037055e-76 |
| MsG0280009372.01 | MsG0480020895.01 | 0.813770 | 2.162869e-51 | 1.425187e-48 |
| MsG0280010495.01 | MsG0480020895.01 | 0.836956 | 6.905270e-57 | 8.838799e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0480020895.01 | MsG0180003651.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020895.01.T01 | MTR_1g067490 | 93.443 | 122 | 8 | 0 | 1 | 122 | 1 | 122 | 6.36e-76 | 221 |
| MsG0480020895.01.T01 | MTR_4g062410 | 94.215 | 121 | 7 | 0 | 2 | 122 | 3 | 123 | 1.15e-75 | 220 |
| MsG0480020895.01.T01 | MTR_1g115545 | 90.000 | 120 | 12 | 0 | 3 | 122 | 2 | 121 | 6.92e-72 | 210 |
| MsG0480020895.01.T01 | MTR_4g072410 | 90.756 | 119 | 11 | 0 | 4 | 122 | 3 | 121 | 4.99e-71 | 208 |
| MsG0480020895.01.T01 | MTR_7g080090 | 85.000 | 120 | 18 | 0 | 3 | 122 | 4 | 123 | 9.16e-66 | 195 |
| MsG0480020895.01.T01 | MTR_1g105880 | 70.787 | 89 | 15 | 1 | 10 | 98 | 2 | 79 | 4.91e-34 | 113 |
| MsG0480020895.01.T01 | MTR_5g045540 | 85.294 | 34 | 5 | 0 | 67 | 100 | 3 | 36 | 3.18e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020895.01.T01 | AT2G39390 | 86.555 | 119 | 16 | 0 | 3 | 121 | 4 | 122 | 5.66e-68 | 201 |
| MsG0480020895.01.T01 | AT3G09500 | 85.714 | 119 | 17 | 0 | 3 | 121 | 4 | 122 | 3.49e-67 | 199 |
| MsG0480020895.01.T01 | AT5G02610 | 86.555 | 119 | 16 | 0 | 3 | 121 | 4 | 122 | 3.57e-67 | 198 |
| MsG0480020895.01.T01 | AT3G55170 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.18e-65 | 195 |
| MsG0480020895.01.T01 | AT3G55170 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.18e-65 | 195 |
| MsG0480020895.01.T01 | AT3G55170 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.18e-65 | 195 |
| MsG0480020895.01.T01 | AT5G02610 | 72.535 | 142 | 16 | 1 | 3 | 121 | 4 | 145 | 2.01e-61 | 185 |
| MsG0480020895.01.T01 | AT3G55170 | 83.505 | 97 | 16 | 0 | 3 | 99 | 4 | 100 | 1.32e-50 | 156 |
| MsG0480020895.01.T01 | AT3G55170 | 83.505 | 97 | 16 | 0 | 3 | 99 | 4 | 100 | 1.32e-50 | 156 |
Find 35 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATAGCTCTTGTCTTCT+TGG | 0.184523 | 4:+50308059 | None:intergenic |
| AGCATTGAGGGAAGTTTATA+AGG | 0.261646 | 4:-50308112 | MsG0480020895.01.T01:CDS |
| GGTCCAACATTACGCCTTAA+TGG | 0.287059 | 4:+50306725 | None:intergenic |
| TACATCTTGGAAAGCTTGTT+TGG | 0.300449 | 4:+50308581 | None:intergenic |
| CTAATAGCTCTTGTCTTCTT+GGG | 0.344589 | 4:+50308060 | None:intergenic |
| TTTAACTTATCTTCATGAAA+TGG | 0.348353 | 4:-50306617 | MsG0480020895.01.T01:three_prime_UTR |
| ACATCTTGGAAAGCTTGTTT+GGG | 0.366421 | 4:+50308582 | None:intergenic |
| CATGAATTTCGATTTGTTGT+TGG | 0.373914 | 4:-50306692 | MsG0480020895.01.T01:three_prime_UTR |
| AGTGAGAAAGTATGCCATTA+AGG | 0.406198 | 4:-50306739 | MsG0480020895.01.T01:CDS |
| AACAATATATAATCTGAAAC+TGG | 0.407053 | 4:+50306554 | None:intergenic |
| GGGCAAGAAGTACTTGCCTT+TGG | 0.416589 | 4:-50308091 | MsG0480020895.01.T01:CDS |
| TTTGAACGCAATAGCTATCA+AGG | 0.421455 | 4:-50308708 | MsG0480020895.01.T01:intron |
| GCGATTCAAGATCTGCGAAA+TGG | 0.425071 | 4:-50308827 | MsG0480020895.01.T01:exon |
| TCGAAATTCATGCAAAAGAA+AGG | 0.425679 | 4:+50306703 | None:intergenic |
| CGATTCAAGATCTGCGAAAT+GGG | 0.431683 | 4:-50308826 | MsG0480020895.01.T01:intron |
| TTGGATGCAGCAAGGTTGTT+CGG | 0.445039 | 4:-50308182 | MsG0480020895.01.T01:intron |
| GAAGATAAGTTAAACTCAAA+AGG | 0.456428 | 4:+50306626 | None:intergenic |
| GCATTGAGGGAAGTTTATAA+GGG | 0.470641 | 4:-50308111 | MsG0480020895.01.T01:CDS |
| CTTCGCGTTGCGAAAGTCAC+CGG | 0.488670 | 4:-50308611 | MsG0480020895.01.T01:CDS |
| AAGCTTGTTTGGGGCACCGC+CGG | 0.495153 | 4:+50308592 | None:intergenic |
| GAAACAAAAGACAGCATTGA+GGG | 0.506620 | 4:-50308124 | MsG0480020895.01.T01:CDS |
| CGAAATTCATGCAAAAGAAA+GGG | 0.512267 | 4:+50306704 | None:intergenic |
| AAGACGCCTCACTAAGCATC+AGG | 0.512300 | 4:-50308037 | MsG0480020895.01.T01:intron |
| TTAATGGCATACTTTCTCAC+TGG | 0.517469 | 4:+50306741 | None:intergenic |
| ATCGCCGCGAGAAAACTTGT+TGG | 0.536369 | 4:+50308845 | None:intergenic |
| TTCTTGGGACGGAGATCCAA+AGG | 0.574336 | 4:+50308075 | None:intergenic |
| TAGCTCTTGTCTTCTTGGGA+CGG | 0.580244 | 4:+50308064 | None:intergenic |
| TAATGGCATACTTTCTCACT+GGG | 0.582481 | 4:+50306742 | None:intergenic |
| GACAGAGCGTGAGAAGAAGA+AGG | 0.584517 | 4:-50306775 | MsG0480020895.01.T01:CDS |
| ATGCCATTAAGGCGTAATGT+TGG | 0.585342 | 4:-50306728 | MsG0480020895.01.T01:exon |
| CATCTTGGAAAGCTTGTTTG+GGG | 0.612959 | 4:+50308583 | None:intergenic |
| CTATCAAGGTTTATGAGCTG+AGG | 0.615557 | 4:-50308694 | MsG0480020895.01.T01:CDS |
| CGCGTTGCGAAAGTCACCGG+CGG | 0.627530 | 4:-50308608 | MsG0480020895.01.T01:CDS |
| AGAAACAAAAGACAGCATTG+AGG | 0.664403 | 4:-50308125 | MsG0480020895.01.T01:CDS |
| CATGTACCTGATGCTTAGTG+AGG | 0.666111 | 4:+50308031 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTACAATTATAATTAT+GGG | - | Chr4:50308236-50308255 | MsG0480020895.01.T01:intron | 10.0% |
| !! | AAATTTAGAGAATAGAATAA+AGG | + | Chr4:50306621-50306640 | None:intergenic | 15.0% |
| !! | ATTATGAAAAAATGAGTAAA+TGG | + | Chr4:50308175-50308194 | None:intergenic | 15.0% |
| !! | CTTTGTTACAATTATAATTA+TGG | - | Chr4:50308235-50308254 | MsG0480020895.01.T01:intron | 15.0% |
| !! | TATAAGCTTTCTTAATAAAA+TGG | - | Chr4:50308566-50308585 | MsG0480020895.01.T01:intron | 15.0% |
| !! | TTGTTACAATTATAATTATG+GGG | - | Chr4:50308237-50308256 | MsG0480020895.01.T01:intron | 15.0% |
| !!! | AGCAAAAAAACTATTTTTTT+AGG | + | Chr4:50307134-50307153 | None:intergenic | 15.0% |
| !!! | TGAATTAATTTGATGAAATT+CGG | - | Chr4:50307451-50307470 | MsG0480020895.01.T01:intron | 15.0% |
| !!! | TTTGTTTTAATTTAAATACG+CGG | - | Chr4:50306915-50306934 | MsG0480020895.01.T01:intron | 15.0% |
| !!! | TTTTTTCATAATTGTTTATG+TGG | - | Chr4:50308183-50308202 | MsG0480020895.01.T01:intron | 15.0% |
| !! | AATGTAAACATTATTGTTCT+AGG | - | Chr4:50307664-50307683 | MsG0480020895.01.T01:intron | 20.0% |
| !! | ATGTAAACATTATTGTTCTA+GGG | - | Chr4:50307665-50307684 | MsG0480020895.01.T01:intron | 20.0% |
| !!! | AACAATATATAATCTGAAAC+TGG | + | Chr4:50308854-50308873 | None:intergenic | 20.0% |
| !!! | GACAATGTTCTAAAAATATT+TGG | - | Chr4:50308735-50308754 | MsG0480020895.01.T01:intron | 20.0% |
| !!! | TAAGCAAAAAACAACTTTTT+AGG | - | Chr4:50307045-50307064 | MsG0480020895.01.T01:intron | 20.0% |
| !!! | TGATCTATAGTAATTTTGAT+TGG | + | Chr4:50307002-50307021 | None:intergenic | 20.0% |
| !!! | TGATTGTTTTTGTTATTGTT+TGG | - | Chr4:50307204-50307223 | MsG0480020895.01.T01:intron | 20.0% |
| !!! | TTAATAGTTTGTAAAGTTTG+TGG | - | Chr4:50307525-50307544 | MsG0480020895.01.T01:intron | 20.0% |
| !!! | TTTAACTTATCTTCATGAAA+TGG | - | Chr4:50308788-50308807 | MsG0480020895.01.T01:intron | 20.0% |
| ! | AATTAAGTGCAATAGAATAG+CGG | + | Chr4:50306858-50306877 | None:intergenic | 25.0% |
| ! | ATAATGATTTCCATGATGTA+TGG | - | Chr4:50307580-50307599 | MsG0480020895.01.T01:intron | 25.0% |
| ! | ATGAGTACAAAAAATGATGT+TGG | + | Chr4:50306648-50306667 | None:intergenic | 25.0% |
| ! | ATGTATGTGGTCTATATTAA+TGG | - | Chr4:50307083-50307102 | MsG0480020895.01.T01:intron | 25.0% |
| ! | CATTGAATAAATGATGTATG+TGG | - | Chr4:50307070-50307089 | MsG0480020895.01.T01:intron | 25.0% |
| ! | GAAGATAAGTTAAACTCAAA+AGG | + | Chr4:50308782-50308801 | None:intergenic | 25.0% |
| ! | TAGAGAATAGAATAAAGGAT+TGG | + | Chr4:50306616-50306635 | None:intergenic | 25.0% |
| ! | TGAAAAAATGAGTAAATGGT+TGG | + | Chr4:50308171-50308190 | None:intergenic | 25.0% |
| !! | AAGCTATCTTTGTAGATTTT+TGG | - | Chr4:50307700-50307719 | MsG0480020895.01.T01:intron | 25.0% |
| !! | AGCTATCTTTGTAGATTTTT+GGG | - | Chr4:50307701-50307720 | MsG0480020895.01.T01:intron | 25.0% |
| !! | ATAGCTTCTTATGATGTTTT+CGG | - | Chr4:50308493-50308512 | MsG0480020895.01.T01:intron | 25.0% |
| !! | ATTTTATCAATGTGCCTTAT+TGG | - | Chr4:50308306-50308325 | MsG0480020895.01.T01:intron | 25.0% |
| !! | TCTTTTAAATATTGGAGTTC+TGG | - | Chr4:50307638-50307657 | MsG0480020895.01.T01:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | Chr4:50307146-50307165 | MsG0480020895.01.T01:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | Chr4:50307165-50307146 | None:intergenic | 25.0% |
| !!! | ACATACATGTTTTGACTTTT+AGG | - | Chr4:50308424-50308443 | MsG0480020895.01.T01:intron | 25.0% |
| !!! | CATACATGTTTTGACTTTTA+GGG | - | Chr4:50308425-50308444 | MsG0480020895.01.T01:intron | 25.0% |
| !!! | CTAGAGTGTCTTTTAAATAT+TGG | - | Chr4:50307630-50307649 | MsG0480020895.01.T01:intron | 25.0% |
| AATGGCTGAATGAATTTACT+TGG | - | Chr4:50308584-50308603 | MsG0480020895.01.T01:CDS | 30.0% | |
| AATTATAATTATGGGGACTG+GGG | - | Chr4:50308244-50308263 | MsG0480020895.01.T01:intron | 30.0% | |
| ACAATTATAATTATGGGGAC+TGG | - | Chr4:50308242-50308261 | MsG0480020895.01.T01:intron | 30.0% | |
| ATGAAATTCGGACTTATTCT+TGG | - | Chr4:50307463-50307482 | MsG0480020895.01.T01:intron | 30.0% | |
| CAATTATAATTATGGGGACT+GGG | - | Chr4:50308243-50308262 | MsG0480020895.01.T01:intron | 30.0% | |
| CATTGAATGAATGATGTATG+TGG | + | Chr4:50307109-50307128 | None:intergenic | 30.0% | |
| CGAAATTCATGCAAAAGAAA+GGG | + | Chr4:50308704-50308723 | None:intergenic | 30.0% | |
| GTAAGTGTTTCTTTCTATGA+AGG | - | Chr4:50307412-50307431 | MsG0480020895.01.T01:intron | 30.0% | |
| GTTTATGTGGACAATACTTA+TGG | - | Chr4:50308196-50308215 | MsG0480020895.01.T01:intron | 30.0% | |
| TATAGATCATATATTCCCTC+CGG | - | Chr4:50307013-50307032 | MsG0480020895.01.T01:intron | 30.0% | |
| TCGAAATTCATGCAAAAGAA+AGG | + | Chr4:50308705-50308724 | None:intergenic | 30.0% | |
| TTGCGTTCAAAAAAGAAGAA+AGG | + | Chr4:50306688-50306707 | None:intergenic | 30.0% | |
| ! | TTTAATTTAAATACGCGGCT+GGG | - | Chr4:50306920-50306939 | MsG0480020895.01.T01:intron | 30.0% |
| !! | CATGAATTTCGATTTGTTGT+TGG | - | Chr4:50308713-50308732 | MsG0480020895.01.T01:intron | 30.0% |
| !!! | TTTTAATTTAAATACGCGGC+TGG | - | Chr4:50306919-50306938 | MsG0480020895.01.T01:intron | 30.0% |
| AAAACATGTATGTACGTGCT+CGG | + | Chr4:50308417-50308436 | None:intergenic | 35.0% | |
| ACAACTTCACCAACAAAGAT+TGG | + | Chr4:50308451-50308470 | None:intergenic | 35.0% | |
| ACATGTGGTACCATTAATTG+AGG | - | Chr4:50308144-50308163 | MsG0480020895.01.T01:CDS | 35.0% | |
| AGAAACAAAAGACAGCATTG+AGG | - | Chr4:50307280-50307299 | MsG0480020895.01.T01:intron | 35.0% | |
| AGATTAAGCTTGAACTTGCA+TGG | - | Chr4:50308110-50308129 | MsG0480020895.01.T01:CDS | 35.0% | |
| ATATCACCTATGCTCCAATA+AGG | + | Chr4:50308323-50308342 | None:intergenic | 35.0% | |
| ATTAATGGTACCACATGTTG+TGG | + | Chr4:50308142-50308161 | None:intergenic | 35.0% | |
| ATTATAATTATGGGGACTGG+GGG | - | Chr4:50308245-50308264 | MsG0480020895.01.T01:intron | 35.0% | |
| CAACCATTCATGAAAAGTCA+AGG | + | Chr4:50308534-50308553 | None:intergenic | 35.0% | |
| CTAATAGCTCTTGTCTTCTT+GGG | + | Chr4:50307348-50307367 | None:intergenic | 35.0% | |
| GCATTGAGGGAAGTTTATAA+GGG | - | Chr4:50307294-50307313 | MsG0480020895.01.T01:intron | 35.0% | |
| TAATGGCATACTTTCTCACT+GGG | + | Chr4:50308666-50308685 | None:intergenic | 35.0% | |
| TCTAATAGCTCTTGTCTTCT+TGG | + | Chr4:50307349-50307368 | None:intergenic | 35.0% | |
| TTAATGGCATACTTTCTCAC+TGG | + | Chr4:50308667-50308686 | None:intergenic | 35.0% | |
| TTAGTGTTGTCAAATAGCAG+CGG | - | Chr4:50307728-50307747 | MsG0480020895.01.T01:intron | 35.0% | |
| TTATTCTTGGTAAGCTGAGA+CGG | - | Chr4:50307476-50307495 | MsG0480020895.01.T01:intron | 35.0% | |
| TTTGAACGCAATAGCTATCA+AGG | - | Chr4:50306697-50306716 | MsG0480020895.01.T01:three_prime_UTR | 35.0% | |
| ! | AATGGTTGGTCCTCAATTAA+TGG | + | Chr4:50308157-50308176 | None:intergenic | 35.0% |
| ! | ACATCTTGGAAAGCTTGTTT+GGG | + | Chr4:50306826-50306845 | None:intergenic | 35.0% |
| ! | AGCATTGAGGGAAGTTTATA+AGG | - | Chr4:50307293-50307312 | MsG0480020895.01.T01:intron | 35.0% |
| ! | AGTGAGAAAGTATGCCATTA+AGG | - | Chr4:50308666-50308685 | MsG0480020895.01.T01:CDS | 35.0% |
| ! | GAAACAAAAGACAGCATTGA+GGG | - | Chr4:50307281-50307300 | MsG0480020895.01.T01:intron | 35.0% |
| ! | TACATCTTGGAAAGCTTGTT+TGG | + | Chr4:50306827-50306846 | None:intergenic | 35.0% |
| !! | CTTAATCTTTGACTTGCTGA+AGG | + | Chr4:50308098-50308117 | None:intergenic | 35.0% |
| !! | GTTGTAGAGTTTTGCTGTAA+TGG | - | Chr4:50308279-50308298 | MsG0480020895.01.T01:intron | 35.0% |
| AAACATGTATGTACGTGCTC+GGG | + | Chr4:50308416-50308435 | None:intergenic | 40.0% | |
| AGAGAAGCTTCCATACATCA+TGG | + | Chr4:50307593-50307612 | None:intergenic | 40.0% | |
| AGCGGAAAATGCATACATCT+TGG | + | Chr4:50306840-50306859 | None:intergenic | 40.0% | |
| AGCTTGAACTTGCATGGTTT+AGG | - | Chr4:50308116-50308135 | MsG0480020895.01.T01:CDS | 40.0% | |
| ATGCCATTAAGGCGTAATGT+TGG | - | Chr4:50308677-50308696 | MsG0480020895.01.T01:CDS | 40.0% | |
| CGATTCAAGATCTGCGAAAT+GGG | - | Chr4:50306579-50306598 | MsG0480020895.01.T01:three_prime_UTR | 40.0% | |
| CTATCAAGGTTTATGAGCTG+AGG | - | Chr4:50306711-50306730 | MsG0480020895.01.T01:three_prime_UTR | 40.0% | |
| GACAACACTTTGTACTACAG+CGG | + | Chr4:50307809-50307828 | None:intergenic | 40.0% | |
| GTGGAAGTAATAGAGGACTT+CGG | + | Chr4:50307978-50307997 | None:intergenic | 40.0% | |
| GTTATTGTTTGGATGCAGCA+AGG | - | Chr4:50307215-50307234 | MsG0480020895.01.T01:intron | 40.0% | |
| TATTCTTGGTAAGCTGAGAC+GGG | - | Chr4:50307477-50307496 | MsG0480020895.01.T01:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | Chr4:50307150-50307169 | MsG0480020895.01.T01:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | Chr4:50307169-50307150 | None:intergenic | 40.0% | |
| TGGAAGTAATAGAGGACTTC+GGG | + | Chr4:50307977-50307996 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | Chr4:50307149-50307168 | MsG0480020895.01.T01:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | Chr4:50307168-50307149 | None:intergenic | 40.0% | |
| ! | AATGTGCCTTATTGGAGCAT+AGG | - | Chr4:50308314-50308333 | MsG0480020895.01.T01:intron | 40.0% |
| ! | CATCTTGGAAAGCTTGTTTG+GGG | + | Chr4:50306825-50306844 | None:intergenic | 40.0% |
| ! | GTGCCTTGACTTTTCATGAA+TGG | - | Chr4:50308528-50308547 | MsG0480020895.01.T01:intron | 40.0% |
| ! | TCTACCAACAAGTTTTCTCG+CGG | - | Chr4:50306556-50306575 | MsG0480020895.01.T01:three_prime_UTR | 40.0% |
| !! | TTAGGGAAGTGTTTGTCTCA+AGG | + | Chr4:50308033-50308052 | None:intergenic | 40.0% |
| !! | TTTGACTTGCTGAAGGAATG+TGG | + | Chr4:50308091-50308110 | None:intergenic | 40.0% |
| !!! | CTTTTAGGGCCAATCTTTGT+TGG | - | Chr4:50308439-50308458 | MsG0480020895.01.T01:intron | 40.0% |
| AAGGGCTTTGCGGAATATTG+TGG | + | Chr4:50307950-50307969 | None:intergenic | 45.0% | |
| AAGTAATAGAGGACTTCGGG+AGG | + | Chr4:50307974-50307993 | None:intergenic | 45.0% | |
| ATATTGTCCGTCGCAGATGA+CGG | + | Chr4:50307891-50307910 | None:intergenic | 45.0% | |
| ATCTGCGACGGACAATATTG+TGG | - | Chr4:50307893-50307912 | MsG0480020895.01.T01:intron | 45.0% | |
| ATGGTTTAGGCCACAACATG+TGG | - | Chr4:50308129-50308148 | MsG0480020895.01.T01:CDS | 45.0% | |
| CATGTACCTGATGCTTAGTG+AGG | + | Chr4:50307377-50307396 | None:intergenic | 45.0% | |
| CGGATAGCAGAACAATACAC+AGG | + | Chr4:50307789-50307808 | None:intergenic | 45.0% | |
| GACAAACACTTCCCTAAGCT+TGG | - | Chr4:50308036-50308055 | MsG0480020895.01.T01:intron | 45.0% | |
| GCGATTCAAGATCTGCGAAA+TGG | - | Chr4:50306578-50306597 | MsG0480020895.01.T01:three_prime_UTR | 45.0% | |
| GGAGCAAGTGGAAGTAATAG+AGG | + | Chr4:50307985-50308004 | None:intergenic | 45.0% | |
| GGTCCAACATTACGCCTTAA+TGG | + | Chr4:50308683-50308702 | None:intergenic | 45.0% | |
| TAGCAACAACTTACTCCCTC+CGG | + | Chr4:50307168-50307187 | None:intergenic | 45.0% | |
| TAGCTCTTGTCTTCTTGGGA+CGG | + | Chr4:50307344-50307363 | None:intergenic | 45.0% | |
| TGCACAAGTCGTCTGATAAG+AGG | + | Chr4:50308351-50308370 | None:intergenic | 45.0% | |
| TTGGATGCAGCAAGGTTGTT+CGG | - | Chr4:50307223-50307242 | MsG0480020895.01.T01:intron | 45.0% | |
| ! | CTATTTTCCGTCATCTGCGA+CGG | - | Chr4:50307881-50307900 | MsG0480020895.01.T01:intron | 45.0% |
| ! | GAAGTGTTTGTCTCAAGGAG+GGG | + | Chr4:50308028-50308047 | None:intergenic | 45.0% |
| !! | GGAAGTGTTTGTCTCAAGGA+GGG | + | Chr4:50308029-50308048 | None:intergenic | 45.0% |
| !! | TCGCAGATGACGGAAAATAG+CGG | + | Chr4:50307881-50307900 | None:intergenic | 45.0% |
| AAGACGCCTCACTAAGCATC+AGG | - | Chr4:50307368-50307387 | MsG0480020895.01.T01:intron | 50.0% | |
| ACGCTATAGCACCGCAATAG+CGG | + | Chr4:50307834-50307853 | None:intergenic | 50.0% | |
| ACTTCCCTAAGCTTGGAACG+TGG | - | Chr4:50308043-50308062 | MsG0480020895.01.T01:CDS | 50.0% | |
| AGTGTTGTCAGCCGCTATTG+CGG | - | Chr4:50307820-50307839 | MsG0480020895.01.T01:intron | 50.0% | |
| ATAGAGGACTTCGGGAGGAA+AGG | + | Chr4:50307969-50307988 | None:intergenic | 50.0% | |
| ATCGCCGCGAGAAAACTTGT+TGG | + | Chr4:50306563-50306582 | None:intergenic | 50.0% | |
| ATCTGCCACGTTCCAAGCTT+AGG | + | Chr4:50308051-50308070 | None:intergenic | 50.0% | |
| GACAGAGCGTGAGAAGAAGA+AGG | - | Chr4:50308630-50308649 | MsG0480020895.01.T01:CDS | 50.0% | |
| TAGAGGACTTCGGGAGGAAA+GGG | + | Chr4:50307968-50307987 | None:intergenic | 50.0% | |
| TCTGCCACGTTCCAAGCTTA+GGG | + | Chr4:50308050-50308069 | None:intergenic | 50.0% | |
| TGTTTGTCTCAAGGAGGGGA+GGG | + | Chr4:50308024-50308043 | None:intergenic | 50.0% | |
| TTATGGGGACTGGGGGAAAT+TGG | - | Chr4:50308252-50308271 | MsG0480020895.01.T01:intron | 50.0% | |
| TTCTTGGGACGGAGATCCAA+AGG | + | Chr4:50307333-50307352 | None:intergenic | 50.0% | |
| !! | GGGAAGTGTTTGTCTCAAGG+AGG | + | Chr4:50308030-50308049 | None:intergenic | 50.0% |
| !! | GGGCAAGAAGTACTTGCCTT+TGG | - | Chr4:50307314-50307333 | MsG0480020895.01.T01:intron | 50.0% |
| CTTCGCGTTGCGAAAGTCAC+CGG | - | Chr4:50306794-50306813 | MsG0480020895.01.T01:intron | 55.0% | |
| GGAAAGGAGGAAGGAGCAAG+TGG | + | Chr4:50307997-50308016 | None:intergenic | 55.0% | |
| GTGTTTGTCTCAAGGAGGGG+AGG | + | Chr4:50308025-50308044 | None:intergenic | 55.0% | |
| TTCGGGAGGAAAGGGCTTTG+CGG | + | Chr4:50307960-50307979 | None:intergenic | 55.0% | |
| !! | GCTATTGCGGTGCTATAGCG+TGG | - | Chr4:50307833-50307852 | MsG0480020895.01.T01:intron | 55.0% |
| GAGGGCAGTGGAAAGGAGGA+AGG | + | Chr4:50308006-50308025 | None:intergenic | 60.0% | |
| !! | AAGCTTGTTTGGGGCACCGC+CGG | + | Chr4:50306816-50306835 | None:intergenic | 60.0% |
| AGGAGGGGAGGGCAGTGGAA+AGG | + | Chr4:50308013-50308032 | None:intergenic | 65.0% | |
| AGGGGAGGGCAGTGGAAAGG+AGG | + | Chr4:50308010-50308029 | None:intergenic | 65.0% | |
| CGCGTTGCGAAAGTCACCGG+CGG | - | Chr4:50306797-50306816 | MsG0480020895.01.T01:intron | 65.0% | |
| TCTCAAGGAGGGGAGGGCAG+TGG | + | Chr4:50308018-50308037 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 50306538 | 50308889 | 50306538 | ID=MsG0480020895.01;Name=MsG0480020895.01 |
| Chr4 | mRNA | 50306538 | 50308889 | 50306538 | ID=MsG0480020895.01.T01;Parent=MsG0480020895.01;Name=MsG0480020895.01.T01;_AED=0.37;_eAED=0.37;_QI=59|1|1|1|1|1|4|196|122 |
| Chr4 | exon | 50306538 | 50306808 | 50306538 | ID=MsG0480020895.01.T01:exon:16622;Parent=MsG0480020895.01.T01 |
| Chr4 | exon | 50308038 | 50308194 | 50308038 | ID=MsG0480020895.01.T01:exon:16621;Parent=MsG0480020895.01.T01 |
| Chr4 | exon | 50308584 | 50308716 | 50308584 | ID=MsG0480020895.01.T01:exon:16620;Parent=MsG0480020895.01.T01 |
| Chr4 | exon | 50308827 | 50308889 | 50308827 | ID=MsG0480020895.01.T01:exon:16619;Parent=MsG0480020895.01.T01 |
| Chr4 | five_prime_UTR | 50308831 | 50308889 | 50308831 | ID=MsG0480020895.01.T01:five_prime_utr;Parent=MsG0480020895.01.T01 |
| Chr4 | CDS | 50308827 | 50308830 | 50308827 | ID=MsG0480020895.01.T01:cds;Parent=MsG0480020895.01.T01 |
| Chr4 | CDS | 50308584 | 50308716 | 50308584 | ID=MsG0480020895.01.T01:cds;Parent=MsG0480020895.01.T01 |
| Chr4 | CDS | 50308038 | 50308194 | 50308038 | ID=MsG0480020895.01.T01:cds;Parent=MsG0480020895.01.T01 |
| Chr4 | CDS | 50306734 | 50306808 | 50306734 | ID=MsG0480020895.01.T01:cds;Parent=MsG0480020895.01.T01 |
| Chr4 | three_prime_UTR | 50306538 | 50306733 | 50306538 | ID=MsG0480020895.01.T01:three_prime_utr;Parent=MsG0480020895.01.T01 |
| Gene Sequence |
| Protein sequence |
