AlfalfaGEDB | MsG0380012091.01

M. sativa cultivar ZhongmuNo.1 / MsG0380012091.01

KEGG: -
GO: GO:0043531
PFAM: PF00931

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012091.01.T01	XP_039687298.1	63.465	1166	241	14	1	991	1	1156	0	1305

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012091.01.T01	Q7XA40	30.833	1080	498	30	40	991	32	990	1.74E-116	385

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000091.01	MsG0380012091.01	0.843892	1.059119e-58	1.681130e-55
MsG0180000100.01	MsG0380012091.01	0.832608	8.578200e-56	9.636762e-53
MsG0180000116.01	MsG0380012091.01	0.856809	2.503398e-62	6.047255e-59
MsG0180000251.01	MsG0380012091.01	0.816884	4.392392e-52	3.150633e-49
MsG0180000470.01	MsG0380012091.01	0.813842	2.086028e-51	1.377234e-48
MsG0180000652.01	MsG0380012091.01	0.807388	5.178557e-50	2.880704e-47
MsG0180000702.01	MsG0380012091.01	0.814336	1.622395e-51	1.085628e-48
MsG0180001971.01	MsG0380012091.01	0.814963	1.178663e-51	8.021461e-49
MsG0180002842.01	MsG0380012091.01	0.801748	7.779338e-49	3.744211e-46
MsG0180003193.01	MsG0380012091.01	0.819046	1.426341e-52	1.085808e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0380012091.01.T01	MTR_3g027200	63.465	1166	241	14	1	991	1	1156	1305
MsG0380012091.01.T01	MTR_3g027420	56.996	1165	310	20	1	996	1	1143	1143
MsG0380012091.01.T01	MTR_3g027250	55.160	1153	343	14	1	992	1	1140	1134
MsG0380012091.01.T01	MTR_3g022060	57.283	1016	286	13	88	991	62	1041	1028
MsG0380012091.01.T01	MTR_7g021000	52.581	1143	373	20	1	991	1	1126	1028
MsG0380012091.01.T01	MTR_3g018930	50.815	1165	385	17	1	991	3	1153	1016
MsG0380012091.01.T01	MTR_3g027470	58.107	993	304	18	84	991	32	997	999
MsG0380012091.01.T01	MTR_3g018980	50.861	1162	387	18	1	993	1	1147	994
MsG0380012091.01.T01	MTR_3g015260	50.215	1161	357	19	1	991	3	1112	966
MsG0380012091.01.T01	MTR_3g019000	48.359	1158	423	20	1	991	1	1150	934

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012091.01.T01	AT3G14470	38.506	522	257	9	1	472	4	511	2.66e-103	347
MsG0380012091.01.T01	AT3G14470	30.303	495	264	17	419	873	563	1016	2.29e-45	178
MsG0380012091.01.T01	AT3G14470	38.506	522	257	9	1	472	4	511	2.66e-103	347
MsG0380012091.01.T01	AT3G14470	30.303	495	264	17	419	873	563	1016	2.29e-45	178
MsG0380012091.01.T01	AT3G14460	34.252	508	286	11	5	469	1	503	1.72e-75	272
MsG0380012091.01.T01	AT3G14460	36.434	258	150	6	481	728	621	874	5.17e-33	139
MsG0380012091.01.T01	AT3G14460	37.209	172	103	4	822	993	1254	1420	6.32e-19	93.6
MsG0380012091.01.T01	AT3G50950	28.682	516	290	16	1	460	1	494	3.15e-51	195
MsG0380012091.01.T01	AT3G50950	28.682	516	290	16	1	460	1	494	3.15e-51	195
MsG0380012091.01.T01	AT3G07040	31.421	366	223	11	125	469	163	521	1.78e-47	184

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Find 230 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTAAGGGACAAGAA+AGG	0.572567	3:+10799606	None:intergenic
AAAACTGATTGGTTCGAGAG+AGG	0.627248	3:-10799025	MsG0380012091.01.T01:CDS
AAAATAGTGGACAAGTGTGG+AGG	0.608101	3:-10801023	MsG0380012091.01.T01:CDS
AAACAAAGCTTCCGATTGGA+AGG	0.508238	3:+10800849	None:intergenic
AAACCGACTATGCTGATTAT+TGG	0.261123	3:+10801521	None:intergenic
AAACGTGGAGTCCTTCCCAG+AGG	0.770799	3:-10798941	MsG0380012091.01.T01:CDS
AAAGAAGATGCCAAAGCATA+TGG	0.384120	3:-10800135	MsG0380012091.01.T01:CDS
AAAGAGTTGGGATTGGGAGA+AGG	0.585861	3:-10801701	MsG0380012091.01.T01:CDS
AAAGCATATATGTGAAGAAC+TGG	0.427933	3:-10801927	MsG0380012091.01.T01:CDS
AAAGGAAGAAACTGAAGAGT+TGG	0.510729	3:+10798904	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATTAAGGGACAAGAA+AGG	+	Chr3:10801156-10801175	None:intergenic	30.0%
AAAGCATATATGTGAAGAAC+TGG	-	Chr3:10798832-10798851	MsG0380012091.01.T01:CDS	30.0%
AACCATTCTTATTAAAGGGT+TGG	-	Chr3:10800744-10800763	MsG0380012091.01.T01:CDS	30.0%
AACTGTTAGATGAGATTTCT+AGG	-	Chr3:10798892-10798911	MsG0380012091.01.T01:CDS	30.0%
AAGGTAATAGCTTTCCAAAT+TGG	-	Chr3:10800956-10800975	MsG0380012091.01.T01:CDS	30.0%
AATCAAATAGCAACTTGAAG+AGG	-	Chr3:10800914-10800933	MsG0380012091.01.T01:CDS	30.0%
AATGTTTCAAGGAATTGAGT+TGG	+	Chr3:10801773-10801792	None:intergenic	30.0%
AATTGAAAACAAGCCATTGT+TGG	-	Chr3:10799641-10799660	MsG0380012091.01.T01:CDS	30.0%
ACCATTCTTATTAAAGGGTT+GGG	-	Chr3:10800745-10800764	MsG0380012091.01.T01:CDS	30.0%
AGTTCTTCACATATATGCTT+TGG	+	Chr3:10798833-10798852	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	10798648	10802133	10798648	ID=MsG0380012091.01;Name=MsG0380012091.01
Chr3	mRNA	10798648	10802133	10798648	ID=MsG0380012091.01.T01;Parent=MsG0380012091.01;Name=MsG0380012091.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|4\|0\|997
Chr3	exon	10801886	10802133	10801886	ID=MsG0380012091.01.T01:exon:268;Parent=MsG0380012091.01.T01
Chr3	exon	10800556	10801769	10800556	ID=MsG0380012091.01.T01:exon:267;Parent=MsG0380012091.01.T01
Chr3	exon	10799524	10800251	10799524	ID=MsG0380012091.01.T01:exon:266;Parent=MsG0380012091.01.T01
Chr3	exon	10798648	10799451	10798648	ID=MsG0380012091.01.T01:exon:265;Parent=MsG0380012091.01.T01
Chr3	CDS	10801886	10802133	10801886	ID=MsG0380012091.01.T01:cds;Parent=MsG0380012091.01.T01
Chr3	CDS	10800556	10801769	10800556	ID=MsG0380012091.01.T01:cds;Parent=MsG0380012091.01.T01
Chr3	CDS	10799524	10800251	10799524	ID=MsG0380012091.01.T01:cds;Parent=MsG0380012091.01.T01
Chr3	CDS	10798648	10799451	10798648	ID=MsG0380012091.01.T01:cds;Parent=MsG0380012091.01.T01

Gene Sequence

>MsG0380012091.01.T01

ATGGCAGAATTGGTAGCTGGGGCATTTCTTCAGTCTTCCTTTCAAGTGATTATTGAGAAGTTGGCTTCGGTTGATATCAGAGACTACTTCGGTTGTAATAATGTTGACGACCTTGTGAAAGAACTTAATATTGCACTCAATTCTATCAACTTAGTACTGGATGAAGCGGAGATAAAGCAGTACCAAAGCATATATGTGAAGAACTGGCTTGATGAACTTAAACATGTTCTTTATGAAGCAGACCAACTACTTAATGAACAACTAGATAAACTAGAACTTCTTGCAAAGCCAAAGAAAGAGTTGGGATTGGGAGAAGGTCCTTGTGCTAGTAATGAAGGCTTAGTCAGTTGGAAACCTTCAAAAAGATTGTCATCTACAGCTCTCATGGATGAGTCAAGCATATATGGTCGAGATGATGATAAGGACAAGTTAATCAAGTTTTTACTTGCAGGCAATGACAGTGGCAACCGGGTTCCAATAATCAGCATAGTCGGTTTAGGAGGGATGGGGAAAACCACCCTTGCTAAGCTTGTGTACAACGACAACAAGATAGAGGAGCATTTTGAACTTAAAGCATGGGTCTATGTTTCAGAATCTTTTGATGTTGTTGGACTCACCAAAGCAATTCTTAAGTCATTTAATTCTTCGGCAGATGGTGAAGACTTGAATCTACTCCAACATCAACTCCAACACATGCTAATGGGGAAGAAATACTTGCTTGTTTTAGATGATATCTGGAATGGGGATGCAGAATGTTGGGAGCTGTTACTTCTTCCCTTTAACCATGGATCTTCTGGAAGTAAGATTATCGTGACAACACGTGAAAAGGAGGTAGCATATCATGTTTTAAAATCCACCGAGTTATTTGATTTACAGCAATTGAAAACAAGCCATTGTTGGAGTTTATTTGTGATACATGCTTTTCAAGGAAAAAGTGTGTGTCAATATCCAACCCTTGAAGCAATTGGCAGGAAAATAGTGGACAAGTGTGGAGGGTTGCCTTTAGCTGTAAAAACATTGGGGCAACTATTGCGAAGAAAATTTTCTCAACATGAATGGTCTGAGATATTGGAGACTGATATGTGGCAATTATTAGATGGGGACAACAAAATTAACCCAGTGCTGAGATTGAGTTACCACAATCTCCCTTCCAATCGGAAGCTTTGTTTTGCCTATTGTTCCATTTTTCCCAAGGGTTATGAATTTAAAAAAGATGGATTGATCAGGCTTTGGATGGCAGAAGGTTTGTTGAAGTGTTGCGGAAGAGACAAAAGAGAAGAAGAGTTAGGTAATGAAATTTTCAGTGATCTTGAGTCAATTTCGTTTTTCCAAATATCACATCGGAACACCTATTCCATGCATGATCTTGTCAATGATTTATCCAAATCAGTGTCAGGAGAATTTTGCAAGCAAATAAGGGTGCTATGGTGGAAGGTAGCCTTGAAAGGACGCGTCATATTCGGCTGTGATGAATTGACAGAGCTCCCATCAAATTTTTCCAAACTCATCAATTTACGTCATCTTGAACTCCCAAGTGATTATAGAGGCACTAGAATAAAGAAGATGCCAAAGCATATGGGAAAACAAAACAATCTTCAAACCCTGTCATATTTTATTGTGGAAGACCATAATGGATCTGATCTTAAAGAGTTGGCAAAACTAAACCATCTTCATGGAACCATTCTTATTAAAGGGTTGGGTAATGTGATTGATCCTGCAGATGCTGCGACAGCCAATTTAACAGATAAGAAGCATTTAGAAGAATTACATTTGATGTTTAATGGTACAAGAAAAGAAATGGATGGCTCAACAATTGAATGCAATGTGTCTGTCTTGGAGGCTCTTCAATCAAATAGCAACTTGAAGAGGCTTACCATCTCACAATACAAAGGTAATAGCTTTCCAAATTGGCTAAGGGGTTGTCATTTACCCAACTTAGTATCTCTTAAACTAAAGGGTTGTGGATTATGTTCTTTGTTGCCACCACTTGGGACGCTCCCCTTTCTCCAGAAGCTTTCTATTTCAGACTGTGATGGAATAAAGATCATTGGTGAAGAGATTTATGGTAACAATTTAACAAATGTTCCTTTCTTGTCCCTTAATGTTTTGGAATTTGAGAAGATGAACAATTGGGAGGAGTGGTTGTGTCTTGAAGGGTTTCCTTTGCTTAAAGAGCTTTATATAATAACTTTGGAGGCATCAATTCCCAAGAGTGATAATATTATAGAGTTAGATATACAGAGATGTGGTAGAATTTTGGTAAATGAATTGCCGACTAGCCTGAAAAAGTTACTCCTTCTGCGAAATCGGTACACCGAGTTCTCCGTGGACCAAAGTTTAATCAATTTTCCCTTTCTTGAAGCGTTGGAGTTGGATTGGAGTGGCTCTATAAAATGTCCTTCTTTGGATTTACGTTGCTATAATTCTCTTCATCAACTTTCAATAACAGGATGGGGCTCGTCCTCCTTGCCTTTTTCACTACACTTGTTCATCAAACTTCAATCTCTTCATATGTACGATTGTCCAGAGCTGGAATCATTTCCAATGGGTGGTTTGCCTTCCAACTTGAGTTTCCTTTATATAGAGAATTGTCCAAAACTGATTGGTTCGAGAGAGGAGTGGGGTTTTTTCCAACTCAATTCCTTGAAACATTTCACTGTTGGTGATTATGAGTTTGAAAACGTGGAGTCCTTCCCAGAGGAGAATCTGTTGCCACCAACTCTTCAGTTTCTTCCTTTGTTTAATTGTTCAAAGCTAAGAATAATGAACAACAAGGGTTTTCTCCACCTCAAATCTCTCAGTTATCTATCTATTTCCAACTGCCCTAGTCTTGAGAGCTTGCCAGAGAAGAAGGCTCTACCCAACTCTCTTTCTTGGTTGTCGATTAAAGATTGTCCAATAATAAAGGAGAAGTATGAAAAGGGGGGAGGAGAGCGTTGGCATACAATTAGTCACATCCCGAATGTGATAATTGACGGAATTTGGCAGTATTGA

Protein sequence

>MsG0380012091.01.T01

MAELVAGAFLQSSFQVIIEKLASVDIRDYFGCNNVDDLVKELNIALNSINLVLDEAEIKQYQSIYVKNWLDELKHVLYEADQLLNEQLDKLELLAKPKKELGLGEGPCASNEGLVSWKPSKRLSSTALMDESSIYGRDDDKDKLIKFLLAGNDSGNRVPIISIVGLGGMGKTTLAKLVYNDNKIEEHFELKAWVYVSESFDVVGLTKAILKSFNSSADGEDLNLLQHQLQHMLMGKKYLLVLDDIWNGDAECWELLLLPFNHGSSGSKIIVTTREKEVAYHVLKSTELFDLQQLKTSHCWSLFVIHAFQGKSVCQYPTLEAIGRKIVDKCGGLPLAVKTLGQLLRRKFSQHEWSEILETDMWQLLDGDNKINPVLRLSYHNLPSNRKLCFAYCSIFPKGYEFKKDGLIRLWMAEGLLKCCGRDKREEELGNEIFSDLESISFFQISHRNTYSMHDLVNDLSKSVSGEFCKQIRVLWWKVALKGRVIFGCDELTELPSNFSKLINLRHLELPSDYRGTRIKKMPKHMGKQNNLQTLSYFIVEDHNGSDLKELAKLNHLHGTILIKGLGNVIDPADAATANLTDKKHLEELHLMFNGTRKEMDGSTIECNVSVLEALQSNSNLKRLTISQYKGNSFPNWLRGCHLPNLVSLKLKGCGLCSLLPPLGTLPFLQKLSISDCDGIKIIGEEIYGNNLTNVPFLSLNVLEFEKMNNWEEWLCLEGFPLLKELYIITLEASIPKSDNIIELDIQRCGRILVNELPTSLKKLLLLRNRYTEFSVDQSLINFPFLEALELDWSGSIKCPSLDLRCYNSLHQLSITGWGSSSLPFSLHLFIKLQSLHMYDCPELESFPMGGLPSNLSFLYIENCPKLIGSREEWGFFQLNSLKHFTVGDYEFENVESFPEENLLPPTLQFLPLFNCSKLRIMNNKGFLHLKSLSYLSISNCPSLESLPEKKALPNSLSWLSIKDCPIIKEKYEKGGGERWHTISHIPNVIIDGIWQY*