AlfalfaGEDB | MsG0380018046.01

M. sativa cultivar ZhongmuNo.1 / MsG0380018046.01

KEGG: K13249
GO: GO:0005789
PFAM: PF03896

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380018046.01.T01	XP_003604029.1	98.062	258	5	0	1	258	1	258	0	514

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380018046.01.T01	P45434	60.417	240	88	3	23	258	20	256	2.34E-83	253

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380018046.01.T01	B7FIS2	98.062	258	5	0	1	258	1	258	0.0	514

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048016.01	MsG0380018046.01	-0.822558	2.221909e-53	1.866234e-50
MsG0080048748.01	MsG0380018046.01	-0.832321	1.010551e-55	1.125457e-52
MsG0080048773.01	MsG0380018046.01	-0.830267	3.234032e-55	3.390512e-52
MsG0080048845.01	MsG0380018046.01	-0.826971	2.024160e-54	1.927720e-51
MsG0080048849.01	MsG0380018046.01	-0.803526	3.342568e-49	1.683624e-46
MsG0080048938.01	MsG0380018046.01	-0.868353	6.952335e-66	2.507182e-62
MsG0080049040.01	MsG0380018046.01	-0.836776	7.676203e-57	9.772680e-54
MsG0080049068.01	MsG0380018046.01	-0.852640	4.042045e-61	8.501014e-58
MsG0080049069.01	MsG0380018046.01	-0.817893	2.604171e-52	1.920228e-49
MsG0080049130.01	MsG0380018046.01	-0.800525	1.383601e-48	6.456574e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380018046.01.T01	MTR_3g117740	98.062	258	5	0	1	258	1	258	0.0	514
MsG0380018046.01.T01	MTR_4g075340	73.705	251	61	3	1	250	1	247	1.54e-118	339

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380018046.01.T01	AT2G16595	59.914	232	86	4	19	249	17	242	9.35e-92	271
MsG0380018046.01.T01	AT2G21160	60.417	240	88	3	23	258	20	256	2.38e-84	253
MsG0380018046.01.T01	AT2G21160	60.479	167	59	3	23	185	20	183	4.25e-66	204

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Find 97 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTAGCTAGACCCATA+TGG	0.530084	3:+103688373	MsG0380018046.01.T01:exon
AAAGTAGCCTGAACTGAAGA+TGG	0.549379	3:-103690818	None:intergenic
AACATTGCATTACCTTAGAC+AGG	0.473431	3:-103691176	None:intergenic
AAGAGATATTAATGGCGACA+GGG	0.676727	3:-103691910	None:intergenic
AATTCCTGGGGCAGAAGGGA+AGG	0.572912	3:-103689269	None:intergenic
AATTCTGTAATAGAATAGGT+TGG	0.582113	3:+103691643	MsG0380018046.01.T01:three_prime_UTR
AATTGCAACAACATTCAAAC+TGG	0.382031	3:-103689583	None:intergenic
ACAAGAAGACGATGATCGTA+TGG	0.565759	3:-103689624	None:intergenic
ACAGAATTCTGTAATAGAAT+AGG	0.479946	3:+103691639	MsG0380018046.01.T01:three_prime_UTR
ACAGCGATGGTGTCAATTCC+TGG	0.351993	3:-103689283	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTTCCATCCAAACATA+CGG	-	Chr3:103689922-103689941	None:intergenic	30.0%
AATAATACTCACGTGGTAAA+TGG	-	Chr3:103691224-103691243	None:intergenic	30.0%
AATGATGATAGAGGAAGAAA+AGG	-	Chr3:103688490-103688509	None:intergenic	30.0%
AATGGATATGAAGAAAAGGA+TGG	-	Chr3:103689064-103689083	None:intergenic	30.0%
AATTAACACAAGATTGTCAG+GGG	-	Chr3:103689382-103689401	None:intergenic	30.0%
AATTGCAACAACATTCAAAC+TGG	-	Chr3:103689586-103689605	None:intergenic	30.0%
ACACAAATCAGTATGAAAAG+GGG	-	Chr3:103691448-103691467	None:intergenic	30.0%
AGATCTATGTATGTACCAAA+TGG	-	Chr3:103690541-103690560	None:intergenic	30.0%
AGGCATGATAAATATAGAAG+GGG	-	Chr3:103690939-103690958	None:intergenic	30.0%
AGTACCATATAACATGGAAT+AGG	-	Chr3:103690489-103690508	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	103688154	103691931	103688154	ID=MsG0380018046.01;Name=MsG0380018046.01
Chr3	mRNA	103688154	103691931	103688154	ID=MsG0380018046.01.T01;Parent=MsG0380018046.01;Name=MsG0380018046.01.T01;_AED=0.34;_eAED=0.34;_QI=238\|1\|1\|1\|0.85\|0.75\|8\|341\|258
Chr3	exon	103688154	103688461	103688154	ID=MsG0380018046.01.T01:exon:18515;Parent=MsG0380018046.01.T01
Chr3	exon	103689164	103689328	103689164	ID=MsG0380018046.01.T01:exon:18516;Parent=MsG0380018046.01.T01
Chr3	exon	103689424	103689474	103689424	ID=MsG0380018046.01.T01:exon:18517;Parent=MsG0380018046.01.T01
Chr3	exon	103689577	103689665	103689577	ID=MsG0380018046.01.T01:exon:18518;Parent=MsG0380018046.01.T01
Chr3	exon	103690797	103690874	103690797	ID=MsG0380018046.01.T01:exon:18519;Parent=MsG0380018046.01.T01
Chr3	exon	103690982	103691185	103690982	ID=MsG0380018046.01.T01:exon:18520;Parent=MsG0380018046.01.T01
Chr3	exon	103691286	103691357	103691286	ID=MsG0380018046.01.T01:exon:18521;Parent=MsG0380018046.01.T01
Chr3	exon	103691543	103691931	103691543	ID=MsG0380018046.01.T01:exon:18522;Parent=MsG0380018046.01.T01
Chr3	five_prime_UTR	103688154	103688391	103688154	ID=MsG0380018046.01.T01:five_prime_utr;Parent=MsG0380018046.01.T01
Chr3	CDS	103688392	103688461	103688392	ID=MsG0380018046.01.T01:cds;Parent=MsG0380018046.01.T01
Chr3	CDS	103689164	103689328	103689164	ID=MsG0380018046.01.T01:cds;Parent=MsG0380018046.01.T01
Chr3	CDS	103689424	103689474	103689424	ID=MsG0380018046.01.T01:cds;Parent=MsG0380018046.01.T01
Chr3	CDS	103689577	103689665	103689577	ID=MsG0380018046.01.T01:cds;Parent=MsG0380018046.01.T01
Chr3	CDS	103690797	103690874	103690797	ID=MsG0380018046.01.T01:cds;Parent=MsG0380018046.01.T01
Chr3	CDS	103690982	103691185	103690982	ID=MsG0380018046.01.T01:cds;Parent=MsG0380018046.01.T01
Chr3	CDS	103691286	103691357	103691286	ID=MsG0380018046.01.T01:cds;Parent=MsG0380018046.01.T01
Chr3	CDS	103691543	103691590	103691543	ID=MsG0380018046.01.T01:cds;Parent=MsG0380018046.01.T01
Chr3	three_prime_UTR	103691591	103691931	103691591	ID=MsG0380018046.01.T01:three_prime_utr;Parent=MsG0380018046.01.T01

Gene Sequence

>MsG0380018046.01.T01

ATGGCGCTCATCAACAAGTTTTTGACTTTCTCCTTCCTTCTCTTCCTCATCGCCTCCCCTTTCCTTCAAGTTGCTAGGTGTCAGTCAGATGAAGCTGTGGAGAATACTGGTGAAGTGAATGACATCGGCATTGTTGGTGATGAAACTGATGATGCTCAAGACTTTGCTGATGGGACCTTCCCTTCTGCCCCAGGAATTGACACCATCGCTGTGTTCCCTAAGAATATTGCGAAATTGGTAAAGGGTGGTGAAGAGGCAGAGCTACTTGTCGGTCTGAAAAACGATGGGCAGTCCAGTTTGAATGTTGTTGCAATTAAGGCTAGTGTTCACCTTCCATACGATCATCGTCTTCTTGTTCAAAACCTTACTGTTCAGGTTTTCAACAATGGCTCCGTGCCATCTTCAGTTCAGGCTACTTTCCCATATATATTTTCTGTCAGCAAGTTCTTGCAGCCTGGACCATTTGATCTTGTGGGCACCATTGTATACGAGATAGACCAACATCCATACCAAAACACTTTCTATAATGGCACCATTGAAGTTGTTGAGCCTGGTGTTTTATTCAGTATGGAATCTGTTTTCCTTTTTACTCTTGGAATTGCACTTCTTATCCTACTTGGGCTATGGATTAATGGTCAAATACATAACCTGTCTAAGAAAACAAAAAGATCTTCCAAGGTTGAAGTTGGGACTAAGACTACAGATGCTTCAATGGATGAATGGCTTCAGGGAACTGCATATACTCAGTCTACGTCGAGCAAATCTAAGAAGAAGTAG

Protein sequence

>MsG0380018046.01.T01

MALINKFLTFSFLLFLIASPFLQVARCQSDEAVENTGEVNDIGIVGDETDDAQDFADGTFPSAPGIDTIAVFPKNIAKLVKGGEEAELLVGLKNDGQSSLNVVAIKASVHLPYDHRLLVQNLTVQVFNNGSVPSSVQATFPYIFSVSKFLQPGPFDLVGTIVYEIDQHPYQNTFYNGTIEVVEPGVLFSMESVFLFTLGIALLILLGLWINGQIHNLSKKTKRSSKVEVGTKTTDASMDEWLQGTAYTQSTSSKSKKK*