Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032203.01.T01 | XP_013451917.2 | 80.142 | 141 | 11 | 1 | 75 | 198 | 158 | 298 | 7.55E-69 | 228 |
| MsG0680032203.01.T01 | XP_013451917.2 | 56.79 | 162 | 47 | 4 | 1 | 153 | 13 | 160 | 2.78E-41 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032203.01.T01 | Q9SKC1 | 37.063 | 143 | 66 | 4 | 75 | 194 | 140 | 281 | 3.06E-22 | 96.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032203.01.T01 | A0A396HEZ8 | 80.142 | 141 | 11 | 1 | 75 | 198 | 158 | 298 | 3.60e-69 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048185.01 | MsG0680032203.01 | -0.800485 | 1.409515e-48 | 6.570962e-46 |
| MsG0080048761.01 | MsG0680032203.01 | -0.807214 | 5.639535e-50 | 3.122879e-47 |
| MsG0180000152.01 | MsG0680032203.01 | 0.808529 | 2.961408e-50 | 1.697311e-47 |
| MsG0180001687.01 | MsG0680032203.01 | 0.804234 | 2.382582e-49 | 1.221961e-46 |
| MsG0180005371.01 | MsG0680032203.01 | 0.812710 | 3.696848e-51 | 2.367408e-48 |
| MsG0180006144.01 | MsG0680032203.01 | 0.841144 | 5.676438e-58 | 8.264513e-55 |
| MsG0280010595.01 | MsG0680032203.01 | 0.804102 | 2.537198e-49 | 1.296967e-46 |
| MsG0280011304.01 | MsG0680032203.01 | 0.803286 | 3.748509e-49 | 1.876305e-46 |
| MsG0680031114.01 | MsG0680032203.01 | 0.815391 | 9.470389e-52 | 6.520896e-49 |
| MsG0680031967.01 | MsG0680032203.01 | 0.808798 | 2.594228e-50 | 1.497297e-47 |
| MsG0680032203.01 | MsG0680032204.01 | 0.848780 | 4.926750e-60 | 9.142860e-57 |
| MsG0680032203.01 | MsG0680033792.01 | 0.828285 | 9.786981e-55 | 9.684365e-52 |
| MsG0680032203.01 | MsG0680035346.01 | 0.813807 | 2.123251e-51 | 1.400539e-48 |
| MsG0680032203.01 | MsG0680035389.01 | 0.803297 | 3.728806e-49 | 1.866975e-46 |
| MsG0680032203.01 | MsG0680035704.01 | 0.807221 | 5.619380e-50 | 3.112336e-47 |
| MsG0680032203.01 | MsG0780035948.01 | 0.809021 | 2.324632e-50 | 1.349683e-47 |
| MsG0680032203.01 | MsG0780039423.01 | 0.842960 | 1.878437e-58 | 2.894769e-55 |
| MsG0680032203.01 | MsG0780040529.01 | 0.810241 | 1.271226e-50 | 7.623081e-48 |
| MsG0680032203.01 | MsG0780040576.01 | -0.804533 | 2.063534e-49 | 1.066544e-46 |
| MsG0680032203.01 | MsG0780040596.01 | 0.810965 | 8.864776e-51 | 5.419848e-48 |
| MsG0680032203.01 | MsG0780041268.01 | 0.801390 | 9.210206e-49 | 4.393107e-46 |
| MsG0680032203.01 | MsG0880042065.01 | 0.804267 | 2.344697e-49 | 1.203600e-46 |
| MsG0680032203.01 | MsG0880042129.01 | 0.811627 | 6.367936e-51 | 3.961357e-48 |
| MsG0680032203.01 | MsG0880042314.01 | 0.808479 | 3.034813e-50 | 1.737152e-47 |
| MsG0680032203.01 | MsG0880042404.01 | 0.806379 | 8.466792e-50 | 4.588508e-47 |
| MsG0680032203.01 | MsG0880044415.01 | 0.817657 | 2.942744e-52 | 2.156018e-49 |
| MsG0680032203.01 | MsG0880044542.01 | 0.843952 | 1.020746e-58 | 1.623128e-55 |
| MsG0680032203.01 | MsG0880045583.01 | 0.814780 | 1.294235e-51 | 8.764472e-49 |
| MsG0680032203.01 | MsG0880045653.01 | 0.814630 | 1.396966e-51 | 9.422474e-49 |
| MsG0680032203.01 | MsG0880047191.01 | 0.812469 | 4.172904e-51 | 2.655600e-48 |
| MsG0480018894.01 | MsG0680032203.01 | 0.831602 | 1.521433e-55 | 1.659184e-52 |
| MsG0480018906.01 | MsG0680032203.01 | 0.809443 | 1.887506e-50 | 1.108360e-47 |
| MsG0480020675.01 | MsG0680032203.01 | 0.812249 | 4.662773e-51 | 2.949715e-48 |
| MsG0480021280.01 | MsG0680032203.01 | 0.804292 | 2.317241e-49 | 1.190297e-46 |
| MsG0480022052.01 | MsG0680032203.01 | -0.817061 | 4.008145e-52 | 2.889059e-49 |
| MsG0480022707.01 | MsG0680032203.01 | 0.811441 | 6.990728e-51 | 4.327833e-48 |
| MsG0480022877.01 | MsG0680032203.01 | 0.822847 | 1.902691e-53 | 1.611228e-50 |
| MsG0480023654.01 | MsG0680032203.01 | 0.800008 | 1.762559e-48 | 8.117865e-46 |
| MsG0580024632.01 | MsG0680032203.01 | 0.804506 | 2.090868e-49 | 1.079900e-46 |
| MsG0380016342.01 | MsG0680032203.01 | -0.813030 | 3.146261e-51 | 2.031957e-48 |
| MsG0380016940.01 | MsG0680032203.01 | 0.807202 | 5.672085e-50 | 3.139947e-47 |
| MsG0380017178.01 | MsG0680032203.01 | -0.827080 | 1.906140e-54 | 1.821119e-51 |
| MsG0580026718.01 | MsG0680032203.01 | 0.807502 | 4.898330e-50 | 2.732940e-47 |
| MsG0580027344.01 | MsG0680032203.01 | 0.806440 | 8.218578e-50 | 4.461036e-47 |
| MsG0680030667.01 | MsG0680032203.01 | 0.817719 | 2.849529e-52 | 2.091276e-49 |
| MsG0280008204.01 | MsG0680032203.01 | 0.803246 | 3.820562e-49 | 1.910447e-46 |
| MsG0280008615.01 | MsG0680032203.01 | 0.832473 | 9.268589e-56 | 1.037031e-52 |
| MsG0280008885.01 | MsG0680032203.01 | 0.800235 | 1.585124e-48 | 7.342715e-46 |
| MsG0280009739.01 | MsG0680032203.01 | 0.804154 | 2.475095e-49 | 1.266907e-46 |
| MsG0280009813.01 | MsG0680032203.01 | 0.808108 | 3.642397e-50 | 2.064557e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032203.01.T01 | MTR_6g038230 | 80.142 | 141 | 11 | 1 | 75 | 198 | 146 | 286 | 9.24e-73 | 227 |
| MsG0680032203.01.T01 | MTR_6g038230 | 55.689 | 167 | 51 | 4 | 1 | 158 | 1 | 153 | 3.42e-45 | 155 |
| MsG0680032203.01.T01 | MTR_6g038200 | 71.631 | 141 | 23 | 1 | 75 | 198 | 146 | 286 | 2.00e-63 | 203 |
| MsG0680032203.01.T01 | MTR_6g038200 | 57.364 | 129 | 40 | 4 | 1 | 124 | 1 | 119 | 2.37e-39 | 140 |
| MsG0680032203.01.T01 | MTR_6g038220 | 69.504 | 141 | 26 | 1 | 75 | 198 | 145 | 285 | 1.31e-60 | 196 |
| MsG0680032203.01.T01 | MTR_6g038220 | 78.667 | 75 | 15 | 1 | 1 | 75 | 1 | 74 | 8.89e-35 | 128 |
| MsG0680032203.01.T01 | MTR_6g038240 | 53.901 | 141 | 48 | 1 | 75 | 198 | 146 | 286 | 8.32e-45 | 154 |
| MsG0680032203.01.T01 | MTR_6g038240 | 47.761 | 134 | 59 | 3 | 1 | 133 | 1 | 124 | 3.33e-29 | 113 |
| MsG0680032203.01.T01 | MTR_6g038300 | 53.191 | 141 | 49 | 1 | 75 | 198 | 146 | 286 | 1.18e-43 | 151 |
| MsG0680032203.01.T01 | MTR_6g038300 | 56.000 | 75 | 33 | 0 | 1 | 75 | 1 | 75 | 5.44e-22 | 92.8 |
| MsG0680032203.01.T01 | MTR_8g088560 | 31.206 | 282 | 103 | 4 | 3 | 194 | 2 | 282 | 1.04e-33 | 125 |
| MsG0680032203.01.T01 | MTR_7g080940 | 44.203 | 138 | 58 | 3 | 75 | 194 | 144 | 280 | 1.78e-30 | 116 |
| MsG0680032203.01.T01 | MTR_7g080940 | 46.667 | 75 | 38 | 1 | 1 | 75 | 1 | 73 | 2.47e-16 | 77.0 |
| MsG0680032203.01.T01 | MTR_7g080935 | 42.754 | 138 | 60 | 3 | 75 | 194 | 144 | 280 | 1.35e-26 | 105 |
| MsG0680032203.01.T01 | MTR_7g080935 | 48.000 | 75 | 37 | 1 | 1 | 75 | 1 | 73 | 1.84e-18 | 82.8 |
| MsG0680032203.01.T01 | MTR_7g080900 | 39.437 | 142 | 66 | 3 | 75 | 198 | 147 | 286 | 3.16e-26 | 104 |
| MsG0680032203.01.T01 | MTR_7g080900 | 50.725 | 69 | 32 | 2 | 8 | 75 | 9 | 76 | 2.41e-15 | 73.9 |
| MsG0680032203.01.T01 | MTR_5g035580 | 41.606 | 137 | 63 | 1 | 75 | 194 | 144 | 280 | 4.03e-25 | 101 |
| MsG0680032203.01.T01 | MTR_5g035580 | 44.944 | 89 | 42 | 2 | 1 | 89 | 3 | 84 | 4.90e-17 | 79.0 |
| MsG0680032203.01.T01 | MTR_7g080950 | 37.500 | 160 | 72 | 4 | 57 | 198 | 130 | 279 | 2.63e-24 | 99.4 |
| MsG0680032203.01.T01 | MTR_7g080950 | 51.429 | 70 | 31 | 2 | 6 | 75 | 2 | 68 | 7.14e-16 | 75.5 |
| MsG0680032203.01.T01 | MTR_5g035560 | 40.146 | 137 | 65 | 1 | 75 | 194 | 142 | 278 | 3.93e-23 | 96.3 |
| MsG0680032203.01.T01 | MTR_5g035560 | 36.296 | 135 | 69 | 5 | 1 | 133 | 1 | 120 | 4.23e-16 | 76.3 |
| MsG0680032203.01.T01 | MTR_7g080960 | 52.174 | 69 | 30 | 2 | 131 | 198 | 281 | 347 | 2.53e-16 | 77.0 |
| MsG0680032203.01.T01 | MTR_7g080960 | 54.545 | 66 | 28 | 2 | 11 | 75 | 12 | 76 | 9.57e-16 | 75.1 |
| MsG0680032203.01.T01 | MTR_8g083300 | 49.180 | 61 | 31 | 0 | 13 | 73 | 9 | 69 | 2.19e-13 | 65.5 |
| MsG0680032203.01.T01 | MTR_3g084520 | 47.761 | 67 | 35 | 0 | 11 | 77 | 6 | 72 | 8.04e-13 | 66.6 |
| MsG0680032203.01.T01 | MTR_3g084530 | 34.615 | 130 | 79 | 3 | 11 | 135 | 6 | 134 | 1.21e-12 | 66.2 |
| MsG0680032203.01.T01 | MTR_3g084540 | 35.385 | 130 | 78 | 3 | 11 | 135 | 6 | 134 | 2.54e-12 | 65.1 |
| MsG0680032203.01.T01 | MTR_8g083290 | 47.541 | 61 | 32 | 0 | 13 | 73 | 6 | 66 | 1.42e-11 | 63.2 |
| MsG0680032203.01.T01 | MTR_5g004940 | 27.570 | 214 | 114 | 7 | 9 | 194 | 15 | 215 | 3.13e-11 | 62.0 |
| MsG0680032203.01.T01 | MTR_8g083280 | 49.254 | 67 | 30 | 3 | 13 | 75 | 9 | 75 | 3.59e-11 | 62.0 |
| MsG0680032203.01.T01 | MTR_1g107380 | 30.714 | 140 | 74 | 4 | 75 | 194 | 159 | 295 | 9.39e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032203.01.T01 | AT2G31790 | 37.063 | 143 | 66 | 4 | 75 | 194 | 140 | 281 | 3.12e-23 | 96.7 |
| MsG0680032203.01.T01 | AT1G05680 | 35.211 | 142 | 71 | 3 | 74 | 194 | 138 | 279 | 7.59e-21 | 89.7 |
| MsG0680032203.01.T01 | AT1G05675 | 35.915 | 142 | 70 | 3 | 74 | 194 | 138 | 279 | 1.19e-20 | 89.4 |
| MsG0680032203.01.T01 | AT2G31750 | 35.246 | 122 | 62 | 1 | 90 | 194 | 158 | 279 | 2.30e-20 | 88.6 |
| MsG0680032203.01.T01 | AT2G31750 | 35.246 | 122 | 62 | 1 | 90 | 194 | 158 | 279 | 3.17e-20 | 88.2 |
| MsG0680032203.01.T01 | AT2G43820 | 38.053 | 113 | 52 | 3 | 105 | 199 | 166 | 278 | 6.61e-16 | 75.5 |
| MsG0680032203.01.T01 | AT2G43820 | 46.667 | 75 | 35 | 2 | 1 | 75 | 1 | 70 | 9.35e-13 | 66.6 |
| MsG0680032203.01.T01 | AT2G43840 | 34.821 | 112 | 55 | 2 | 105 | 198 | 166 | 277 | 1.04e-14 | 72.0 |
| MsG0680032203.01.T01 | AT2G43840 | 45.333 | 75 | 36 | 2 | 1 | 75 | 1 | 70 | 2.03e-11 | 62.8 |
| MsG0680032203.01.T01 | AT2G43840 | 35.714 | 112 | 54 | 3 | 105 | 198 | 166 | 277 | 4.31e-14 | 70.5 |
| MsG0680032203.01.T01 | AT2G43840 | 45.333 | 75 | 36 | 2 | 1 | 75 | 1 | 70 | 2.01e-11 | 62.8 |
| MsG0680032203.01.T01 | AT1G05560 | 35.294 | 102 | 61 | 3 | 11 | 107 | 55 | 156 | 6.73e-14 | 70.1 |
| MsG0680032203.01.T01 | AT1G05560 | 35.294 | 102 | 61 | 3 | 11 | 107 | 5 | 106 | 8.51e-14 | 69.7 |
| MsG0680032203.01.T01 | AT1G24100 | 51.613 | 62 | 26 | 1 | 10 | 71 | 10 | 67 | 2.62e-13 | 68.2 |
| MsG0680032203.01.T01 | AT1G24100 | 32.787 | 122 | 62 | 3 | 93 | 194 | 163 | 284 | 2.88e-12 | 65.1 |
Find 38 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGCTAGATTCTGTATT+TGG | 0.136499 | 6:-36101711 | None:intergenic |
| ATCAGTGCCATCTTCGTATT+TGG | 0.145724 | 6:+36101641 | MsG0680032203.01.T01:CDS |
| CCTTCTCTCTTATATAAATA+TGG | 0.167874 | 6:+36100949 | MsG0680032203.01.T01:CDS |
| GATGGTCCGATTGTCTTTAA+TGG | 0.248537 | 6:-36101621 | None:intergenic |
| TGATAACTGTTTATTCATAT+TGG | 0.292730 | 6:+36100544 | MsG0680032203.01.T01:CDS |
| TCAGTTGTGTATGTCTCATT+TGG | 0.337402 | 6:+36101759 | MsG0680032203.01.T01:CDS |
| ATCAAAGATGACAAAGAATA+TGG | 0.352890 | 6:+36101672 | MsG0680032203.01.T01:CDS |
| CGCTTTGAGAATTGAATCAT+AGG | 0.365703 | 6:-36100492 | None:intergenic |
| CAGTTGTGTATGTCTCATTT+GGG | 0.398015 | 6:+36101760 | MsG0680032203.01.T01:CDS |
| CAATCTGAGTATTTGTTACC+TGG | 0.413505 | 6:+36100898 | MsG0680032203.01.T01:CDS |
| ATATGTCCTTGTGCTGGATA+AGG | 0.444665 | 6:-36100465 | None:intergenic |
| TGGATTGGTTGGCTAAGATT+TGG | 0.446047 | 6:+36101598 | MsG0680032203.01.T01:CDS |
| TTTGATAGAGAAAGGAGTAA+AGG | 0.459498 | 6:+36100515 | MsG0680032203.01.T01:CDS |
| TCAAAGCGTTTGATAGAGAA+AGG | 0.470113 | 6:+36100507 | MsG0680032203.01.T01:CDS |
| GGCTGAATGAGAAACCAAAA+AGG | 0.471817 | 6:+36101736 | MsG0680032203.01.T01:CDS |
| GATTTAGGTGGTGGATTGGT+TGG | 0.476522 | 6:+36101587 | MsG0680032203.01.T01:intron |
| AAATACTCAGATTGTGAAAG+TGG | 0.478790 | 6:-36100889 | None:intergenic |
| ATACAGAATCTAGCATCAAA+TGG | 0.488892 | 6:+36101715 | MsG0680032203.01.T01:CDS |
| ATTTGGCCATTAAAGACAAT+CGG | 0.490173 | 6:+36101615 | MsG0680032203.01.T01:CDS |
| GAGAGATAGAGAGATGGAAA+AGG | 0.497705 | 6:+36100407 | None:intergenic |
| GGATTCATATGTCCTTGTGC+TGG | 0.513849 | 6:-36100471 | None:intergenic |
| ATTTGATTTAGGTGGTGGAT+TGG | 0.525361 | 6:+36101583 | MsG0680032203.01.T01:intron |
| ATTTCAGATGGCTATGACGA+TGG | 0.545355 | 6:+36100615 | MsG0680032203.01.T01:CDS |
| ACAACTACGTCAAACACGAT+TGG | 0.552524 | 6:-36100979 | None:intergenic |
| ATTGTCTAAACTTGCTCAAG+GGG | 0.566260 | 6:+36100921 | MsG0680032203.01.T01:CDS |
| TGTGAATCAATTTCTAACAT+CGG | 0.568255 | 6:+36100999 | MsG0680032203.01.T01:CDS |
| GGATTGTCTAAACTTGCTCA+AGG | 0.572555 | 6:+36100919 | MsG0680032203.01.T01:CDS |
| TGAGCAAGTTTAGACAATCC+AGG | 0.574900 | 6:-36100916 | None:intergenic |
| AAATACGAAGATGGCACTGA+TGG | 0.577313 | 6:-36101639 | None:intergenic |
| GATTGTCTAAACTTGCTCAA+GGG | 0.585259 | 6:+36100920 | MsG0680032203.01.T01:CDS |
| CCATATTTATATAAGAGAGA+AGG | 0.609540 | 6:-36100949 | None:intergenic |
| ATAGAGAGATGGAAAAGGAG+AGG | 0.611519 | 6:+36100412 | None:intergenic |
| CAGATGGCTATGACGATGGA+GGG | 0.615649 | 6:+36100619 | MsG0680032203.01.T01:CDS |
| TCAGATGGCTATGACGATGG+AGG | 0.621440 | 6:+36100618 | MsG0680032203.01.T01:CDS |
| TACGTCAAACACGATTGGAT+AGG | 0.637459 | 6:-36100974 | None:intergenic |
| GAAGTTGAGAGCATTTCAGA+TGG | 0.645106 | 6:+36100603 | MsG0680032203.01.T01:CDS |
| ATCATACCTTATCCAGCACA+AGG | 0.674802 | 6:+36100459 | MsG0680032203.01.T01:CDS |
| TGATCAGACAGTGAGCTACA+CGG | 0.694664 | 6:-36100440 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTAAATTAATTTGATTT+AGG | + | Chr6:36101572-36101591 | MsG0680032203.01.T01:intron | 10.0% |
| !! | ATACTTATGAAAAGTAATAT+AGG | - | Chr6:36101444-36101463 | None:intergenic | 15.0% |
| !!! | TTAAATTAATTTGATTTAGG+TGG | + | Chr6:36101575-36101594 | MsG0680032203.01.T01:intron | 15.0% |
| !! | ATAAAAATAGAAGACTATCA+AGG | - | Chr6:36101538-36101557 | None:intergenic | 20.0% |
| !! | TGATAACTGTTTATTCATAT+TGG | + | Chr6:36100544-36100563 | MsG0680032203.01.T01:CDS | 20.0% |
| !!! | TAATACTATATTTCTGTTAG+TGG | - | Chr6:36101239-36101258 | None:intergenic | 20.0% |
| ! | AACACTCTATAAAATTGGTT+TGG | + | Chr6:36101465-36101484 | MsG0680032203.01.T01:intron | 25.0% |
| ! | ATCAAAGATGACAAAGAATA+TGG | + | Chr6:36101672-36101691 | MsG0680032203.01.T01:CDS | 25.0% |
| ! | CCATATTTATATAAGAGAGA+AGG | - | Chr6:36100952-36100971 | None:intergenic | 25.0% |
| ! | CCTTCTCTCTTATATAAATA+TGG | + | Chr6:36100949-36100968 | MsG0680032203.01.T01:CDS | 25.0% |
| ! | GTATCAACACTCTATAAAAT+TGG | + | Chr6:36101460-36101479 | MsG0680032203.01.T01:intron | 25.0% |
| ! | TGTGAATCAATTTCTAACAT+CGG | + | Chr6:36100999-36101018 | MsG0680032203.01.T01:CDS | 25.0% |
| !! | AATTAATTTGATTTAGGTGG+TGG | + | Chr6:36101578-36101597 | MsG0680032203.01.T01:intron | 25.0% |
| !!! | TCTAGTTTTGCTTATCTAAT+GGG | + | Chr6:36101121-36101140 | MsG0680032203.01.T01:intron | 25.0% |
| AAATACTCAGATTGTGAAAG+TGG | - | Chr6:36100892-36100911 | None:intergenic | 30.0% | |
| AACCACTAACAAACTTCTAA+GGG | - | Chr6:36101291-36101310 | None:intergenic | 30.0% | |
| AGAACAAGATTGAGTGAAAA+AGG | - | Chr6:36100825-36100844 | None:intergenic | 30.0% | |
| ATACAGAATCTAGCATCAAA+TGG | + | Chr6:36101715-36101734 | MsG0680032203.01.T01:CDS | 30.0% | |
| ATTTGGCCATTAAAGACAAT+CGG | + | Chr6:36101615-36101634 | MsG0680032203.01.T01:CDS | 30.0% | |
| CGAAGTATAGAATGACATTT+CGG | - | Chr6:36101096-36101115 | None:intergenic | 30.0% | |
| CGATAAGATCTTAAATGTTG+CGG | + | Chr6:36101171-36101190 | MsG0680032203.01.T01:intron | 30.0% | |
| TTGATGCTAGATTCTGTATT+TGG | - | Chr6:36101714-36101733 | None:intergenic | 30.0% | |
| TTTGATAGAGAAAGGAGTAA+AGG | + | Chr6:36100515-36100534 | MsG0680032203.01.T01:CDS | 30.0% | |
| ! | ATTTTATGAACTCGAACAAG+AGG | + | Chr6:36101049-36101068 | MsG0680032203.01.T01:intron | 30.0% |
| ! | CTTTTATCCAAATACGAAGA+TGG | - | Chr6:36101651-36101670 | None:intergenic | 30.0% |
| ! | TATCTAATGGGATGTGATTT+TGG | + | Chr6:36101133-36101152 | MsG0680032203.01.T01:intron | 30.0% |
| !!! | GTCTAGTTTTGCTTATCTAA+TGG | + | Chr6:36101120-36101139 | MsG0680032203.01.T01:intron | 30.0% |
| AAGTTTACATAGAGACCTTC+TGG | + | Chr6:36100664-36100683 | MsG0680032203.01.T01:intron | 35.0% | |
| AATTTCAAACCATGTTGTCG+TGG | - | Chr6:36101386-36101405 | None:intergenic | 35.0% | |
| CAAAGATGACACAATTTGGT+GGG | - | Chr6:36100746-36100765 | None:intergenic | 35.0% | |
| CAACCACTAACAAACTTCTA+AGG | - | Chr6:36101292-36101311 | None:intergenic | 35.0% | |
| CAGTTGTGTATGTCTCATTT+GGG | + | Chr6:36101760-36101779 | MsG0680032203.01.T01:CDS | 35.0% | |
| CTTCAAATTTAATCGCACAG+CGG | + | Chr6:36101213-36101232 | MsG0680032203.01.T01:intron | 35.0% | |
| CTTGATGTTGCCAAGAATTT+CGG | + | Chr6:36100786-36100805 | MsG0680032203.01.T01:intron | 35.0% | |
| CTTTGATGCAATTTGTCCTT+GGG | + | Chr6:36100761-36100780 | MsG0680032203.01.T01:intron | 35.0% | |
| GCATCAAAGATGACACAATT+TGG | - | Chr6:36100750-36100769 | None:intergenic | 35.0% | |
| TAACATCGGTAAAGCAGATT+GGG | + | Chr6:36101013-36101032 | MsG0680032203.01.T01:intron | 35.0% | |
| TCAAAGATGACACAATTTGG+TGG | - | Chr6:36100747-36100766 | None:intergenic | 35.0% | |
| TCAGTTGTGTATGTCTCATT+TGG | + | Chr6:36101759-36101778 | MsG0680032203.01.T01:CDS | 35.0% | |
| TCTTTGATGCAATTTGTCCT+TGG | + | Chr6:36100760-36100779 | MsG0680032203.01.T01:intron | 35.0% | |
| TTGATGTTGCCAAGAATTTC+GGG | + | Chr6:36100787-36100806 | MsG0680032203.01.T01:intron | 35.0% | |
| ! | ACATACACAACTGACCTTTT+TGG | - | Chr6:36101753-36101772 | None:intergenic | 35.0% |
| ! | ATTGTCTAAACTTGCTCAAG+GGG | + | Chr6:36100921-36100940 | MsG0680032203.01.T01:CDS | 35.0% |
| ! | CAATCTGAGTATTTGTTACC+TGG | + | Chr6:36100898-36100917 | MsG0680032203.01.T01:CDS | 35.0% |
| ! | GATTGTCTAAACTTGCTCAA+GGG | + | Chr6:36100920-36100939 | MsG0680032203.01.T01:CDS | 35.0% |
| ! | TCAAAGCGTTTGATAGAGAA+AGG | + | Chr6:36100507-36100526 | MsG0680032203.01.T01:CDS | 35.0% |
| !! | ATTTGATTTAGGTGGTGGAT+TGG | + | Chr6:36101583-36101602 | MsG0680032203.01.T01:intron | 35.0% |
| !! | CGCTTTGAGAATTGAATCAT+AGG | - | Chr6:36100495-36100514 | None:intergenic | 35.0% |
| ACAACTACGTCAAACACGAT+TGG | - | Chr6:36100982-36101001 | None:intergenic | 40.0% | |
| ATATGTCCTTGTGCTGGATA+AGG | - | Chr6:36100468-36100487 | None:intergenic | 40.0% | |
| ATCAGTGCCATCTTCGTATT+TGG | + | Chr6:36101641-36101660 | MsG0680032203.01.T01:CDS | 40.0% | |
| ATCATACCTTATCCAGCACA+AGG | + | Chr6:36100459-36100478 | MsG0680032203.01.T01:CDS | 40.0% | |
| ATTTCAGATGGCTATGACGA+TGG | + | Chr6:36100615-36100634 | MsG0680032203.01.T01:CDS | 40.0% | |
| CTAACATCGGTAAAGCAGAT+TGG | + | Chr6:36101012-36101031 | MsG0680032203.01.T01:intron | 40.0% | |
| GATGGTCCGATTGTCTTTAA+TGG | - | Chr6:36101624-36101643 | None:intergenic | 40.0% | |
| GATTTGTATCCACGACAACA+TGG | + | Chr6:36101374-36101393 | MsG0680032203.01.T01:intron | 40.0% | |
| GGCTGAATGAGAAACCAAAA+AGG | + | Chr6:36101736-36101755 | MsG0680032203.01.T01:CDS | 40.0% | |
| TACGTCAAACACGATTGGAT+AGG | - | Chr6:36100977-36100996 | None:intergenic | 40.0% | |
| TGAGCAAGTTTAGACAATCC+AGG | - | Chr6:36100919-36100938 | None:intergenic | 40.0% | |
| TGCGGTGGTTAGAAATCAAA+GGG | - | Chr6:36101501-36101520 | None:intergenic | 40.0% | |
| ! | AAATACGAAGATGGCACTGA+TGG | - | Chr6:36101642-36101661 | None:intergenic | 40.0% |
| ! | GGATTGTCTAAACTTGCTCA+AGG | + | Chr6:36100919-36100938 | MsG0680032203.01.T01:CDS | 40.0% |
| !! | AATGGGATGTGATTTTGGCA+AGG | + | Chr6:36101138-36101157 | MsG0680032203.01.T01:intron | 40.0% |
| !! | CTCCCTTAGAAGTTTGTTAG+TGG | + | Chr6:36101286-36101305 | MsG0680032203.01.T01:intron | 40.0% |
| !! | GAAGTTGAGAGCATTTCAGA+TGG | + | Chr6:36100603-36100622 | MsG0680032203.01.T01:CDS | 40.0% |
| !! | TGGATTGGTTGGCTAAGATT+TGG | + | Chr6:36101598-36101617 | MsG0680032203.01.T01:CDS | 40.0% |
| AAGGACTTAAAACCCGTCTG+CGG | - | Chr6:36101519-36101538 | None:intergenic | 45.0% | |
| ACCAAGTAGCCCGAAATTCT+TGG | - | Chr6:36100799-36100818 | None:intergenic | 45.0% | |
| AGTATCCGTGCTTCACAGAT+AGG | + | Chr6:36101409-36101428 | MsG0680032203.01.T01:intron | 45.0% | |
| CTGCGGTGGTTAGAAATCAA+AGG | - | Chr6:36101502-36101521 | None:intergenic | 45.0% | |
| GGATTCATATGTCCTTGTGC+TGG | - | Chr6:36100474-36100493 | None:intergenic | 45.0% | |
| TCAAGCCTATCTGTGAAGCA+CGG | - | Chr6:36101417-36101436 | None:intergenic | 45.0% | |
| TGATCAGACAGTGAGCTACA+CGG | - | Chr6:36100443-36100462 | None:intergenic | 45.0% | |
| TGATTTCTAACCACCGCAGA+CGG | + | Chr6:36101503-36101522 | MsG0680032203.01.T01:intron | 45.0% | |
| TTGGCAACATCAAGAACCCA+AGG | - | Chr6:36100780-36100799 | None:intergenic | 45.0% | |
| TTGTGATCCAACTCTCCAGA+AGG | - | Chr6:36100682-36100701 | None:intergenic | 45.0% | |
| ! | ATAGAGACCTTCTGGAGAGT+TGG | + | Chr6:36100672-36100691 | MsG0680032203.01.T01:intron | 45.0% |
| ! | TAGCCACTGACTATGAAGCA+CGG | + | Chr6:36101334-36101353 | MsG0680032203.01.T01:intron | 45.0% |
| ! | TGACGATGGAGGGTATGAAT+CGG | + | Chr6:36100629-36100648 | MsG0680032203.01.T01:intron | 45.0% |
| !! | GATTTAGGTGGTGGATTGGT+TGG | + | Chr6:36101587-36101606 | MsG0680032203.01.T01:intron | 45.0% |
| CAGATGGCTATGACGATGGA+GGG | + | Chr6:36100619-36100638 | MsG0680032203.01.T01:CDS | 50.0% | |
| GATTTCTAACCACCGCAGAC+GGG | + | Chr6:36101504-36101523 | MsG0680032203.01.T01:intron | 50.0% | |
| GCCAAGAATTTCGGGCTACT+TGG | + | Chr6:36100795-36100814 | MsG0680032203.01.T01:intron | 50.0% | |
| GCGGATAATTGCTACTGACG+TGG | + | Chr6:36101190-36101209 | MsG0680032203.01.T01:intron | 50.0% | |
| TCAGATGGCTATGACGATGG+AGG | + | Chr6:36100618-36100637 | MsG0680032203.01.T01:CDS | 50.0% | |
| TGTCCGTGCTTCATAGTCAG+TGG | - | Chr6:36101340-36101359 | None:intergenic | 50.0% | |
| GACTTAAAACCCGTCTGCGG+TGG | - | Chr6:36101516-36101535 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 36100420 | 36101812 | 36100420 | ID=MsG0680032203.01;Name=MsG0680032203.01 |
| Chr6 | mRNA | 36100420 | 36101812 | 36100420 | ID=MsG0680032203.01.T01;Parent=MsG0680032203.01;Name=MsG0680032203.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|202 |
| Chr6 | exon | 36100420 | 36100640 | 36100420 | ID=MsG0680032203.01.T01:exon:19654;Parent=MsG0680032203.01.T01 |
| Chr6 | exon | 36100852 | 36101020 | 36100852 | ID=MsG0680032203.01.T01:exon:19655;Parent=MsG0680032203.01.T01 |
| Chr6 | exon | 36101594 | 36101812 | 36101594 | ID=MsG0680032203.01.T01:exon:19656;Parent=MsG0680032203.01.T01 |
| Chr6 | CDS | 36100420 | 36100640 | 36100420 | ID=MsG0680032203.01.T01:cds;Parent=MsG0680032203.01.T01 |
| Chr6 | CDS | 36100852 | 36101020 | 36100852 | ID=MsG0680032203.01.T01:cds;Parent=MsG0680032203.01.T01 |
| Chr6 | CDS | 36101594 | 36101812 | 36101594 | ID=MsG0680032203.01.T01:cds;Parent=MsG0680032203.01.T01 |
| Gene Sequence |
| Protein sequence |
