AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035704.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035704.01.T01 MTR_6g088010 95.192 208 10 0 1 208 1 208 4.54e-148 410
MsG0680035704.01.T01 MTR_6g088020 85.577 208 30 0 1 208 1 208 1.00e-132 371
MsG0680035704.01.T01 MTR_5g005470 60.870 207 79 1 1 207 1 205 1.24e-87 257
MsG0680035704.01.T01 MTR_5g016220 56.522 207 88 1 2 208 127 331 2.82e-80 243
MsG0680035704.01.T01 MTR_5g016220 44.361 133 74 0 1 133 1 133 1.99e-31 117
MsG0680035704.01.T01 MTR_5g016200 59.024 205 77 2 1 204 1 199 3.22e-80 238
MsG0680035704.01.T01 MTR_6g042230 56.522 207 87 1 1 207 1 204 2.17e-78 233
MsG0680035704.01.T01 MTR_7g090220 41.361 191 107 2 16 205 59 245 6.99e-44 147
MsG0680035704.01.T01 MTR_3g058520 50.000 66 32 1 131 196 94 158 1.37e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035704.01.T01 AT3G22320 55.392 204 89 1 2 205 1 202 4.92e-79 235
MsG0680035704.01.T01 AT5G57980 42.995 207 112 3 5 207 5 209 4.05e-54 172
MsG0680035704.01.T01 AT2G41340 37.000 200 121 2 10 208 23 218 2.08e-39 135
MsG0680035704.01.T01 AT3G57080 35.294 204 127 2 3 205 20 219 2.61e-38 132
MsG0680035704.01.T01 AT3G54490 36.548 197 120 2 10 205 38 230 1.92e-35 125
MsG0680035704.01.T01 AT2G41340 33.143 175 103 3 10 183 23 184 1.82e-23 93.2
MsG0680035704.01.T01 AT2G41340 35.220 159 98 2 10 167 23 177 5.69e-23 91.7

Find 38 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCGCCTTGAAGTCTTTC+TGG 0.158098 6:+110982667 MsG0680035704.01.T01:CDS
TTTCATGTGTTCGCCGTATT+TGG 0.178722 6:-110982429 None:intergenic
GAATGTTGATAATGGGATTT+TGG 0.182720 6:+110982580 MsG0680035704.01.T01:CDS
GATCCTGTTGCGAGATATTA+TGG 0.267061 6:+110986465 MsG0680035704.01.T01:CDS
CTTGGTGTTAAGATTGTTAG+AGG 0.323964 6:+110982533 MsG0680035704.01.T01:CDS
AGTTTCTGTCGGATAACATT+TGG 0.355496 6:-110982358 None:intergenic
TTGAACGAGAATGTTGATAA+TGG 0.358712 6:+110982572 MsG0680035704.01.T01:CDS
GGATCCGACGTCAAAATTCT+AGG 0.372876 6:-110986447 None:intergenic
TTCTCGAGACATGGTAAGTT+CGG 0.383852 6:-110982396 None:intergenic
TGGGTTGTTTCTGTGAGTTT+TGG 0.406142 6:-110982471 None:intergenic
ACACATGAAACGAGAACAAT+TGG 0.418532 6:+110982442 MsG0680035704.01.T01:CDS
AGTCCATAATATCTCGCAAC+AGG 0.442138 6:-110986468 None:intergenic
TGAACGAGAATGTTGATAAT+GGG 0.456181 6:+110982573 MsG0680035704.01.T01:CDS
GACAAGTTGTCAGGATTATC+CGG 0.456842 6:+110986499 MsG0680035704.01.T01:CDS
CAATTACCAGAAAGACTTCA+AGG 0.467927 6:-110982673 None:intergenic
TTCTCTGATGATGCTAAACT+TGG 0.475053 6:+110982515 MsG0680035704.01.T01:CDS
CACAGTGTATTTCTTGAGCA+AGG 0.476320 6:-110985138 None:intergenic
GTTGCTGAAATGAGTTCTGT+TGG 0.477137 6:+110982641 MsG0680035704.01.T01:CDS
GATAAGCTCAAGAAGCAATT+CGG 0.487663 6:-110986554 None:intergenic
TAAGGCGTGGACAAGTTGTC+AGG 0.488439 6:+110986490 MsG0680035704.01.T01:CDS
GAAGATTTCATCTCCAAATA+CGG 0.498349 6:+110982416 MsG0680035704.01.T01:CDS
TTCGACAAGGTAGTTTCTGT+CGG 0.515425 6:-110982369 None:intergenic
TGTCGGATAACATTTGGAGA+AGG 0.521778 6:-110982352 None:intergenic
GTCGGATAACATTTGGAGAA+GGG 0.526708 6:-110982351 None:intergenic
TTGCGAGATATTATGGACTA+AGG 0.534711 6:+110986472 MsG0680035704.01.T01:CDS
TCTCAGCGTCAGTGAGAACC+TGG 0.535150 6:-110985109 None:intergenic
TGCCTGCAGTCTCACTTGGC+CGG 0.539482 6:-110986518 None:intergenic
TATGTGCCTGCAGTCTCACT+TGG 0.550720 6:-110986522 None:intergenic
GGTGCAGGAGGATGAACTGC+TGG 0.602196 6:+110985052 MsG0680035704.01.T01:intron
ATCCGGCCAAGTGAGACTGC+AGG 0.602297 6:+110986516 MsG0680035704.01.T01:CDS
GATGAAATCTTCTCGAGACA+TGG 0.607302 6:-110982405 None:intergenic
ATACACTGTGAAAGATACTC+AGG 0.612579 6:+110985151 MsG0680035704.01.T01:CDS
CGAACGTGTACCTCCACACC+AGG 0.612581 6:+110985091 MsG0680035704.01.T01:CDS
AGATATTATGGACTAAGGCG+TGG 0.621762 6:+110986477 MsG0680035704.01.T01:CDS
AACTGCTGGTGAACATAACA+AGG 0.623262 6:+110985066 MsG0680035704.01.T01:CDS
GCGTCAGTGAGAACCTGGTG+TGG 0.644520 6:-110985104 None:intergenic
TCAGTGAGAACCTGGTGTGG+AGG 0.656519 6:-110985101 None:intergenic
TAAGTTCGGTTTCTTCGACA+AGG 0.667255 6:-110982382 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAATTTTCATATTATTAT+CGG - Chr6:110983231-110983250 None:intergenic 10.0%
!!! ATTTTAACAAATTATTATCA+GGG - Chr6:110982872-110982891 None:intergenic 10.0%
!!! TATTTTAACAAATTATTATC+AGG - Chr6:110982873-110982892 None:intergenic 10.0%
!!! TTTTTTTTTCAAATTATTAG+CGG + Chr6:110983000-110983019 MsG0680035704.01.T01:intron 10.0%
!! ATAAACATGAAACAAATTAT+TGG - Chr6:110983644-110983663 None:intergenic 15.0%
!! TAAACATGAAACAAATTATT+GGG - Chr6:110983643-110983662 None:intergenic 15.0%
!! TGTTTATATGATAAGATATT+AGG - Chr6:110983705-110983724 None:intergenic 15.0%
!!! ATTTTCACAAATTATTATCA+AGG - Chr6:110983165-110983184 None:intergenic 15.0%
!!! TTTTTTTATCTTGTGATAAA+CGG + Chr6:110983787-110983806 MsG0680035704.01.T01:intron 15.0%
!! AAATTCTAATACATGCATTA+TGG + Chr6:110985635-110985654 MsG0680035704.01.T01:intron 20.0%
!! AAGGTTATTACTGATAAAAT+AGG - Chr6:110985425-110985444 None:intergenic 20.0%
!! AGTAATATTCATTATTCTTG+CGG - Chr6:110983478-110983497 None:intergenic 20.0%
!! ATTCTAACAAAAAAAATTCC+TGG - Chr6:110984950-110984969 None:intergenic 20.0%
!! GACTAAAAAAATTCAATTGA+AGG - Chr6:110984453-110984472 None:intergenic 20.0%
!! GGTAAAACTTATATCAAAAT+AGG - Chr6:110983684-110983703 None:intergenic 20.0%
!! TACATCATTTAATCTAGAAA+TGG - Chr6:110985871-110985890 None:intergenic 20.0%
!! TTTAGTGTAATTATAAGTGT+CGG - Chr6:110982972-110982991 None:intergenic 20.0%
!!! ACTTGTTACAAAATAAACAT+AGG - Chr6:110983742-110983761 None:intergenic 20.0%
!!! ATGTTTATTTTGTAACAAGT+TGG + Chr6:110983742-110983761 MsG0680035704.01.T01:intron 20.0%
!!! GTGATTAAAGTAAAGTTTTT+TGG + Chr6:110985948-110985967 MsG0680035704.01.T01:intron 20.0%
!!! TCTTTATCTAATGGATTTAT+TGG + Chr6:110986322-110986341 MsG0680035704.01.T01:intron 20.0%
!!! TTTTGTAATATCTGAATTGT+TGG + Chr6:110983267-110983286 MsG0680035704.01.T01:intron 20.0%
! AAAGAAAACAAATTCATCAC+TGG - Chr6:110983616-110983635 None:intergenic 25.0%
! AATTGTTGGATAATAGATAG+GGG + Chr6:110983281-110983300 MsG0680035704.01.T01:intron 25.0%
! ATCCATTAGATAAAGAATGA+AGG - Chr6:110986318-110986337 None:intergenic 25.0%
! GAATTGTTGGATAATAGATA+GGG + Chr6:110983280-110983299 MsG0680035704.01.T01:intron 25.0%
! GATCTTAATCTTGTTCAATT+GGG - Chr6:110985732-110985751 None:intergenic 25.0%
! GTATATACTATAACTCTGTT+TGG + Chr6:110985888-110985907 MsG0680035704.01.T01:intron 25.0%
! TAAGATCACTTCATATTTGA+TGG + Chr6:110985745-110985764 MsG0680035704.01.T01:intron 25.0%
! TATTCTTGAGCTATGTAATT+GGG - Chr6:110983515-110983534 None:intergenic 25.0%
! TCATTTAATCTAGAAATGGA+AGG - Chr6:110985867-110985886 None:intergenic 25.0%
! TGAATTGTTGGATAATAGAT+AGG + Chr6:110983279-110983298 MsG0680035704.01.T01:intron 25.0%
! TGATCTTAATCTTGTTCAAT+TGG - Chr6:110985733-110985752 None:intergenic 25.0%
! TTAACAAATTATTATCAGGG+TGG - Chr6:110982869-110982888 None:intergenic 25.0%
! TTACTGATAAAATAGGAACT+AGG - Chr6:110985418-110985437 None:intergenic 25.0%
! TTAGCAACTTCAATTTCTTA+TGG + Chr6:110986266-110986285 MsG0680035704.01.T01:intron 25.0%
! TTATTCTTGAGCTATGTAAT+TGG - Chr6:110983516-110983535 None:intergenic 25.0%
! TTCACAGCTATCTATTATTA+GGG - Chr6:110983969-110983988 None:intergenic 25.0%
! TTGCAAATTCGTAAATTTGA+AGG + Chr6:110984633-110984652 MsG0680035704.01.T01:intron 25.0%
!! AATGATACTTTTACAACAGA+TGG - Chr6:110984484-110984503 None:intergenic 25.0%
!!! TAGTTTTGTTATGTCTTCTT+CGG - Chr6:110982315-110982334 None:intergenic 25.0%
!!! TTGTTAGAGGTTTTATTACT+AGG + Chr6:110982546-110982565 MsG0680035704.01.T01:CDS 25.0%
!!! TTTTATTACTAGCTTTACAG+AGG - Chr6:110985576-110985595 None:intergenic 25.0%
!!! TTTTGTCATTTCTGAATTGT+TGG + Chr6:110982708-110982727 MsG0680035704.01.T01:intron 25.0%
AACAAATATCGTGCAAACTT+AGG - Chr6:110986202-110986221 None:intergenic 30.0%
AACTAGGAACAGATCAAATT+CGG - Chr6:110985402-110985421 None:intergenic 30.0%
ACAAATATCGTGCAAACTTA+GGG - Chr6:110986201-110986220 None:intergenic 30.0%
AGATGATAACTTCTAACATG+TGG + Chr6:110985307-110985326 MsG0680035704.01.T01:intron 30.0%
ATATAATTGCATCACAATGC+AGG - Chr6:110985537-110985556 None:intergenic 30.0%
CAAACACTTCAAATTCAATC+TGG + Chr6:110986140-110986159 MsG0680035704.01.T01:intron 30.0%
CTAATACATGCATTATGGTT+TGG + Chr6:110985640-110985659 MsG0680035704.01.T01:intron 30.0%
CTCCTTCATTCTTTATCTAA+TGG + Chr6:110986313-110986332 MsG0680035704.01.T01:intron 30.0%
CTTCACAGCTATCTATTATT+AGG - Chr6:110983970-110983989 None:intergenic 30.0%
GAAATTATAATCGAACCTGA+TGG - Chr6:110983570-110983589 None:intergenic 30.0%
GAAGATTTCATCTCCAAATA+CGG + Chr6:110982416-110982435 MsG0680035704.01.T01:CDS 30.0%
GTATATTAACTAACAAGCCT+AGG - Chr6:110985510-110985529 None:intergenic 30.0%
TATTCATTATTCTTGCGGTT+TGG - Chr6:110983473-110983492 None:intergenic 30.0%
TCACAGCTATCTATTATTAG+GGG - Chr6:110983968-110983987 None:intergenic 30.0%
TGATGCAATTATATCCGAAT+TGG + Chr6:110985543-110985562 MsG0680035704.01.T01:intron 30.0%
TGGAAATGAATTGAAAGAGA+TGG - Chr6:110983596-110983615 None:intergenic 30.0%
TTGACGAATGTGTAGAAAAA+TGG + Chr6:110984781-110984800 MsG0680035704.01.T01:intron 30.0%
! CAGATTGAATTTGAAGTGTT+TGG - Chr6:110986142-110986161 None:intergenic 30.0%
! GAAGTGTTTGGTAAAATTAG+CGG - Chr6:110986130-110986149 None:intergenic 30.0%
! GTGATTCATTCTTTTACAAG+AGG + Chr6:110984696-110984715 MsG0680035704.01.T01:intron 30.0%
! TGTTTGATAGCTATGAAACA+CGG + Chr6:110984224-110984243 MsG0680035704.01.T01:intron 30.0%
! TTGAACGAGAATGTTGATAA+TGG + Chr6:110982572-110982591 MsG0680035704.01.T01:CDS 30.0%
! TTGTTATTCTCATCATTAGC+AGG + Chr6:110985837-110985856 MsG0680035704.01.T01:intron 30.0%
!! ACAGAGGTTATTTTCCAATT+CGG - Chr6:110985560-110985579 None:intergenic 30.0%
!! TGAACGAGAATGTTGATAAT+GGG + Chr6:110982573-110982592 MsG0680035704.01.T01:CDS 30.0%
!! TGCAGTATTGACAATCAAAA+TGG + Chr6:110984674-110984693 MsG0680035704.01.T01:intron 30.0%
!! TTTTGATTGTCAATACTGCA+AGG - Chr6:110984674-110984693 None:intergenic 30.0%
!!! AACACACAGATTTTTTCAGA+TGG - Chr6:110982494-110982513 None:intergenic 30.0%
!!! ACACACAGATTTTTTCAGAT+GGG - Chr6:110982493-110982512 None:intergenic 30.0%
!!! ATGGCTTGATGTTTTGAAAA+AGG + Chr6:110984374-110984393 MsG0680035704.01.T01:intron 30.0%
!!! GAATGTTGATAATGGGATTT+TGG + Chr6:110982580-110982599 MsG0680035704.01.T01:CDS 30.0%
!!! TGGCTTGATGTTTTGAAAAA+GGG + Chr6:110984375-110984394 MsG0680035704.01.T01:intron 30.0%
AAAAAATTCCTGGTGACATG+TGG - Chr6:110984940-110984959 None:intergenic 35.0%
AAGTTGCTAAGACAAGTGAA+AGG - Chr6:110986256-110986275 None:intergenic 35.0%
ACACATGAAACGAGAACAAT+TGG + Chr6:110982442-110982461 MsG0680035704.01.T01:CDS 35.0%
AGTTTCTGTCGGATAACATT+TGG - Chr6:110982361-110982380 None:intergenic 35.0%
ATACACTGTGAAAGATACTC+AGG + Chr6:110985151-110985170 MsG0680035704.01.T01:CDS 35.0%
ATCACATATCGTGTCAAACA+CGG - Chr6:110984167-110984186 None:intergenic 35.0%
ATCATTCTTTGAACCATCAC+AGG + Chr6:110984498-110984517 MsG0680035704.01.T01:intron 35.0%
ATTGATATGCAACACTGACA+CGG + Chr6:110982731-110982750 MsG0680035704.01.T01:intron 35.0%
CAATTACCAGAAAGACTTCA+AGG - Chr6:110982676-110982695 None:intergenic 35.0%
GGTTTGGACAATGCATATAA+GGG + Chr6:110985656-110985675 MsG0680035704.01.T01:intron 35.0%
TAAGTCTACCACTAATCCTA+CGG + Chr6:110984575-110984594 MsG0680035704.01.T01:intron 35.0%
TACTATAACTCTGTTTGGCA+AGG + Chr6:110985893-110985912 MsG0680035704.01.T01:intron 35.0%
TCAAGCTCTATCTAACTTTG+TGG - Chr6:110984108-110984127 None:intergenic 35.0%
TGCAAACAAGAACTAAGAAC+AGG - Chr6:110984552-110984571 None:intergenic 35.0%
TTAGATAGAGCTTGATGTGT+AGG + Chr6:110984113-110984132 MsG0680035704.01.T01:intron 35.0%
TTCAATAGAATTGCGTGTGT+CGG + Chr6:110984292-110984311 MsG0680035704.01.T01:intron 35.0%
! AATCTTGTTCAATTGGGTTG+CGG - Chr6:110985726-110985745 None:intergenic 35.0%
! AGATAAAAAAGCATGCGGTT+TGG - Chr6:110983892-110983911 None:intergenic 35.0%
! ATGTTTTCTGCACAAATCCT+AGG + Chr6:110985490-110985509 MsG0680035704.01.T01:intron 35.0%
! GCGGAATTTAGCATTTCTTT+TGG - Chr6:110985707-110985726 None:intergenic 35.0%
! TGGTTTGGACAATGCATATA+AGG + Chr6:110985655-110985674 MsG0680035704.01.T01:intron 35.0%
! TTCTCTGATGATGCTAAACT+TGG + Chr6:110982515-110982534 MsG0680035704.01.T01:CDS 35.0%
! TTGCGAGATATTATGGACTA+AGG + Chr6:110986472-110986491 MsG0680035704.01.T01:CDS 35.0%
!! ATTATTCTTGCGGTTTGGTT+TGG - Chr6:110983468-110983487 None:intergenic 35.0%
!! CTTGGTGTTAAGATTGTTAG+AGG + Chr6:110982533-110982552 MsG0680035704.01.T01:CDS 35.0%
!! TGGTTTGCGGTTTTTCTATT+GGG - Chr6:110983325-110983344 None:intergenic 35.0%
!! TGTTGGAAGGTGTTTGAAAA+AGG + Chr6:110984136-110984155 MsG0680035704.01.T01:intron 35.0%
!! TTTTGAAAAAGGGTGATGAC+TGG + Chr6:110984385-110984404 MsG0680035704.01.T01:intron 35.0%
!!! ACATTTGGAGAAGGGTTTTT+TGG - Chr6:110982346-110982365 None:intergenic 35.0%
!!! GTTTTTCTATTGGGTTGGTT+CGG - Chr6:110983316-110983335 None:intergenic 35.0%
!!! TTGGTTTGCGGTTTTTCTAT+TGG - Chr6:110983326-110983345 None:intergenic 35.0%
AACTGCTGGTGAACATAACA+AGG + Chr6:110985066-110985085 MsG0680035704.01.T01:CDS 40.0%
AAGGTTGAGGTAATCATCGA+TGG + Chr6:110985031-110985050 MsG0680035704.01.T01:intron 40.0%
AGTCCATAATATCTCGCAAC+AGG - Chr6:110986471-110986490 None:intergenic 40.0%
ATAGCTATGAAACACGGACA+TGG + Chr6:110984230-110984249 MsG0680035704.01.T01:intron 40.0%
ATTCTTTGAACCATCACAGG+TGG + Chr6:110984501-110984520 MsG0680035704.01.T01:intron 40.0%
CAAACCAAACCAAACCAATG+CGG - Chr6:110983834-110983853 None:intergenic 40.0%
CACAGTGTATTTCTTGAGCA+AGG - Chr6:110985141-110985160 None:intergenic 40.0%
CACATTCGTCAAATTCGCAA+TGG - Chr6:110984773-110984792 None:intergenic 40.0%
CTTACACATGCTATGAAGCA+CGG - Chr6:110983050-110983069 None:intergenic 40.0%
GACAAGTTGTCAGGATTATC+CGG + Chr6:110986499-110986518 MsG0680035704.01.T01:CDS 40.0%
GAGTAGTAGAGATTTGTGCA+AGG + Chr6:110984866-110984885 MsG0680035704.01.T01:intron 40.0%
GAGTCCTTCTTCATATGTGT+TGG + Chr6:110984995-110985014 MsG0680035704.01.T01:intron 40.0%
GATCCTGTTGCGAGATATTA+TGG + Chr6:110986465-110986484 MsG0680035704.01.T01:CDS 40.0%
GATGAAATCTTCTCGAGACA+TGG - Chr6:110982408-110982427 None:intergenic 40.0%
GTCGGATAACATTTGGAGAA+GGG - Chr6:110982354-110982373 None:intergenic 40.0%
GTGTTTGGTAAAATTAGCGG+TGG - Chr6:110986127-110986146 None:intergenic 40.0%
GTTGCTGAAATGAGTTCTGT+TGG + Chr6:110982641-110982660 MsG0680035704.01.T01:CDS 40.0%
TAAGTTCGGTTTCTTCGACA+AGG - Chr6:110982385-110982404 None:intergenic 40.0%
TCCTTCTTCATATGTGTTGG+TGG + Chr6:110984998-110985017 MsG0680035704.01.T01:intron 40.0%
TGTCGGATAACATTTGGAGA+AGG - Chr6:110982355-110982374 None:intergenic 40.0%
TTCGACAAGGTAGTTTCTGT+CGG - Chr6:110982372-110982391 None:intergenic 40.0%
TTCTCGAGACATGGTAAGTT+CGG - Chr6:110982399-110982418 None:intergenic 40.0%
TTTCATGTGTTCGCCGTATT+TGG - Chr6:110982432-110982451 None:intergenic 40.0%
! AGATATTATGGACTAAGGCG+TGG + Chr6:110986477-110986496 MsG0680035704.01.T01:CDS 40.0%
! CCTTCTTCATATGTGTTGGT+GGG + Chr6:110984999-110985018 MsG0680035704.01.T01:intron 40.0%
! CTGTTTGGTATAGTGTTGGA+TGG - Chr6:110986177-110986196 None:intergenic 40.0%
! TTGCGGTTTTTCTATTGGGT+TGG - Chr6:110983321-110983340 None:intergenic 40.0%
! TTTGGTATAGTGTTGGATGG+TGG - Chr6:110986174-110986193 None:intergenic 40.0%
!! AAAAAGCATGCGGTTTGGTT+TGG - Chr6:110983887-110983906 None:intergenic 40.0%
!! GCTACCTAGAATTTTGACGT+CGG + Chr6:110986443-110986462 MsG0680035704.01.T01:intron 40.0%
!! GTTTGGATTGGTTTGGTTTG+CGG - Chr6:110983338-110983357 None:intergenic 40.0%
!! TCTATTATTAGGGGTGTTCG+CGG - Chr6:110983959-110983978 None:intergenic 40.0%
!! TGGTTTGGTTTGGTTTGGTT+TGG + Chr6:110983837-110983856 MsG0680035704.01.T01:intron 40.0%
!!! TGCTTTTTTATCTCGCGGTT+TGG + Chr6:110983899-110983918 MsG0680035704.01.T01:intron 40.0%
!!! TGGGTTGTTTCTGTGAGTTT+TGG - Chr6:110982474-110982493 None:intergenic 40.0%
AAACCGCAAAAAACCGCACT+TGG + Chr6:110983360-110983379 MsG0680035704.01.T01:intron 45.0%
AACACTGCACTCTGCACATA+AGG - Chr6:110985444-110985463 None:intergenic 45.0%
AATTTCTGCCACATGTCACC+AGG + Chr6:110984929-110984948 MsG0680035704.01.T01:intron 45.0%
ACCACTAATCCTACGGACAA+TGG + Chr6:110984582-110984601 MsG0680035704.01.T01:intron 45.0%
ACCATTGTCCGTAGGATTAG+TGG - Chr6:110984586-110984605 None:intergenic 45.0%
ACTAATCCTACGGACAATGG+TGG + Chr6:110984585-110984604 MsG0680035704.01.T01:intron 45.0%
AGAGCTTGATGTGTAGGTGT+TGG + Chr6:110984119-110984138 MsG0680035704.01.T01:intron 45.0%
CAAACCAAACCAATGCGGTT+TGG - Chr6:110983829-110983848 None:intergenic 45.0%
CAGTATTCATCCACCTGTGA+TGG - Chr6:110984514-110984533 None:intergenic 45.0%
CATGCTATGAAGCACGGATA+CGG - Chr6:110983044-110983063 None:intergenic 45.0%
CCCACCAACACATATGAAGA+AGG - Chr6:110985002-110985021 None:intergenic 45.0%
CCTGATACGCTAAAAGCTAG+CGG - Chr6:110985924-110985943 None:intergenic 45.0%
GAATTCATCCGAACCAAGTG+CGG - Chr6:110983376-110983395 None:intergenic 45.0%
GACACACTGTCCATAAGTGT+CGG + Chr6:110984337-110984356 MsG0680035704.01.T01:intron 45.0%
GCAAAAAACCGCACTTGGTT+CGG + Chr6:110983365-110983384 MsG0680035704.01.T01:intron 45.0%
GCAAGGTTGCACAGTATAGA+GGG + Chr6:110984883-110984902 MsG0680035704.01.T01:intron 45.0%
GCACTTACACTTCTGATGGA+AGG - Chr6:110984086-110984105 None:intergenic 45.0%
GCTAAGACAAGTGAAAGGCA+AGG - Chr6:110986251-110986270 None:intergenic 45.0%
GGATCCGACGTCAAAATTCT+AGG - Chr6:110986450-110986469 None:intergenic 45.0%
GGGTCTGTTTGGTATAGTGT+TGG - Chr6:110986181-110986200 None:intergenic 45.0%
GTGCAAACTTAGGGTCTGTT+TGG - Chr6:110986192-110986211 None:intergenic 45.0%
TAAGCGCCTTGAAGTCTTTC+TGG + Chr6:110982667-110982686 MsG0680035704.01.T01:CDS 45.0%
TACGCTAAAAGCTAGCGGTT+TGG - Chr6:110985919-110985938 None:intergenic 45.0%
TCTTATCCACCATTGTCCGT+AGG - Chr6:110984594-110984613 None:intergenic 45.0%
TGCAAGGTTGCACAGTATAG+AGG + Chr6:110984882-110984901 MsG0680035704.01.T01:intron 45.0%
TGTGGCACTTACACTTCTGA+TGG - Chr6:110984090-110984109 None:intergenic 45.0%
TGTTGGACAGTGTCAGACAA+TGG + Chr6:110984315-110984334 MsG0680035704.01.T01:intron 45.0%
! ATTAGCGGTGTCAGAGTGTT+TGG + Chr6:110983015-110983034 MsG0680035704.01.T01:intron 45.0%
! CAAACCAATGCGGTTTGGAT+TGG - Chr6:110983824-110983843 None:intergenic 45.0%
! CCGCGAGATAAAAAAGCATG+CGG - Chr6:110983897-110983916 None:intergenic 45.0%
! TCTTCATATGTGTTGGTGGG+TGG + Chr6:110985002-110985021 MsG0680035704.01.T01:intron 45.0%
! TGTTGGTGGGTGGTTCTTTA+AGG + Chr6:110985012-110985031 MsG0680035704.01.T01:intron 45.0%
! TTTTCCATCGTTGCACCATC+AGG + Chr6:110983552-110983571 MsG0680035704.01.T01:intron 45.0%
!! AAGGAGTGTCAGTGCTTCAT+AGG - Chr6:110982922-110982941 None:intergenic 45.0%
!! CAAACCGCATTGGTTTGGTT+TGG + Chr6:110983827-110983846 MsG0680035704.01.T01:intron 45.0%
!! CAATCCAAACCGCATTGGTT+TGG + Chr6:110983822-110983841 MsG0680035704.01.T01:intron 45.0%
!! CAATGCGGTTTGGATTGGTT+CGG - Chr6:110983819-110983838 None:intergenic 45.0%
!! CCATAAGTGTCGGTGCTATA+GGG + Chr6:110984347-110984366 MsG0680035704.01.T01:intron 45.0%
!! CGCATTGGTTTGGTTTGGTT+TGG + Chr6:110983832-110983851 MsG0680035704.01.T01:intron 45.0%
!! CGGTTTGGTTTGGTTTGGTT+CGG - Chr6:110983458-110983477 None:intergenic 45.0%
!! CTTGATGTGTAGGTGTTGGA+AGG + Chr6:110984123-110984142 MsG0680035704.01.T01:intron 45.0%
!! GCACTTGGTTCGGATGAATT+CGG + Chr6:110983375-110983394 MsG0680035704.01.T01:intron 45.0%
!! GGTTTCGGTTTGGATTGGTT+TGG - Chr6:110983345-110983364 None:intergenic 45.0%
!! TCCATAAGTGTCGGTGCTAT+AGG + Chr6:110984346-110984365 MsG0680035704.01.T01:intron 45.0%
!! TCTTGCGGTTTGGTTTGGTT+TGG - Chr6:110983463-110983482 None:intergenic 45.0%
!! TGGGTGGTTCTTTAAGGTTG+AGG + Chr6:110985018-110985037 MsG0680035704.01.T01:intron 45.0%
!! TTTGCGGTTTCGGTTTGGAT+TGG - Chr6:110983350-110983369 None:intergenic 45.0%
!!! AGTGCGGTTTTTTGCGGTTT+CGG - Chr6:110983360-110983379 None:intergenic 45.0%
!!! CCGCATGCTTTTTTATCTCG+CGG + Chr6:110983894-110983913 MsG0680035704.01.T01:intron 45.0%
!!! GAACCAAGTGCGGTTTTTTG+CGG - Chr6:110983366-110983385 None:intergenic 45.0%
!!! GGTTTTTTGCGGTTTCGGTT+TGG - Chr6:110983355-110983374 None:intergenic 45.0%
!! ATTAAAAATAAATATAAAGA+AGG - Chr6:110985190-110985209 None:intergenic 5.0%
CGAACCAATCCAAACCGCAT+TGG + Chr6:110983817-110983836 MsG0680035704.01.T01:intron 50.0%
CTAGGTAGCTGAGAAGCAGA+CGG - Chr6:110986432-110986451 None:intergenic 50.0%
GAGGTAATCATCGATGGTGC+AGG + Chr6:110985037-110985056 MsG0680035704.01.T01:intron 50.0%
GTAATCATCGATGGTGCAGG+AGG + Chr6:110985040-110985059 MsG0680035704.01.T01:intron 50.0%
TAAGGCGTGGACAAGTTGTC+AGG + Chr6:110986490-110986509 MsG0680035704.01.T01:CDS 50.0%
TATGTGCCTGCAGTCTCACT+TGG - Chr6:110986525-110986544 None:intergenic 50.0%
TCCTTCGATTAGGTGTGTCC+CGG + Chr6:110982937-110982956 MsG0680035704.01.T01:intron 50.0%
! AGAATTGCGTGTGTCGGTGT+TGG + Chr6:110984298-110984317 MsG0680035704.01.T01:intron 50.0%
! GCACTGACACTCCTTCGATT+AGG + Chr6:110982927-110982946 MsG0680035704.01.T01:intron 50.0%
!! CCCTATAGCACCGACACTTA+TGG - Chr6:110984350-110984369 None:intergenic 50.0%
!! GCATGCGGTTTGGTTTGGTT+CGG - Chr6:110983882-110983901 None:intergenic 50.0%
!! GTCGGTGCTATAGGGTTAGA+TGG + Chr6:110984355-110984374 MsG0680035704.01.T01:intron 50.0%
!! TAAGTGTCGGTGTCTGACAC+CGG - Chr6:110982959-110982978 None:intergenic 50.0%
!!! CCGCTAGCTTTTAGCGTATC+AGG + Chr6:110985921-110985940 MsG0680035704.01.T01:intron 50.0%
ACCGGGACACACCTAATCGA+AGG - Chr6:110982941-110982960 None:intergenic 55.0%
TCAGTGAGAACCTGGTGTGG+AGG - Chr6:110985104-110985123 None:intergenic 55.0%
TCTCAGCGTCAGTGAGAACC+TGG - Chr6:110985112-110985131 None:intergenic 55.0%
! CGAACCTGATGGTGCAACGA+TGG - Chr6:110983559-110983578 None:intergenic 55.0%
! GACTTTTGCACTGAACCGCG+CGG + Chr6:110983400-110983419 MsG0680035704.01.T01:intron 55.0%
!! AAGTGTCGGTGTCTGACACC+GGG - Chr6:110982958-110982977 None:intergenic 55.0%
!! TATTAGGGGTGTTCGCGGTG+CGG - Chr6:110983954-110983973 None:intergenic 55.0%
ATCCGGCCAAGTGAGACTGC+AGG + Chr6:110986516-110986535 MsG0680035704.01.T01:CDS 60.0%
CGAACGTGTACCTCCACACC+AGG + Chr6:110985091-110985110 MsG0680035704.01.T01:CDS 60.0%
CTGAACCGCGCGGTTCAGTT+CGG + Chr6:110983410-110983429 MsG0680035704.01.T01:intron 60.0%
GCAAACCGAACTGAACCGCG+CGG - Chr6:110983418-110983437 None:intergenic 60.0%
GCGTCAGTGAGAACCTGGTG+TGG - Chr6:110985107-110985126 None:intergenic 60.0%
GGTGCAGGAGGATGAACTGC+TGG + Chr6:110985052-110985071 MsG0680035704.01.T01:intron 60.0%
TGCCTGCAGTCTCACTTGGC+CGG - Chr6:110986521-110986540 None:intergenic 60.0%
! GCGCGGTTCAGTTCGGTTTG+CGG + Chr6:110983417-110983436 MsG0680035704.01.T01:intron 60.0%
! GGGGTGTTCGCGGTGCGGTT+TGG - Chr6:110983949-110983968 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 110982302 110986569 110982302 ID=MsG0680035704.01;Name=MsG0680035704.01
Chr6 mRNA 110982302 110986569 110982302 ID=MsG0680035704.01.T01;Parent=MsG0680035704.01;Name=MsG0680035704.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|208
Chr6 exon 110982302 110982688 110982302 ID=MsG0680035704.01.T01:exon:9011;Parent=MsG0680035704.01.T01
Chr6 exon 110985059 110985172 110985059 ID=MsG0680035704.01.T01:exon:9012;Parent=MsG0680035704.01.T01
Chr6 exon 110986444 110986569 110986444 ID=MsG0680035704.01.T01:exon:9013;Parent=MsG0680035704.01.T01
Chr6 CDS 110982302 110982688 110982302 ID=MsG0680035704.01.T01:cds;Parent=MsG0680035704.01.T01
Chr6 CDS 110985059 110985172 110985059 ID=MsG0680035704.01.T01:cds;Parent=MsG0680035704.01.T01
Chr6 CDS 110986444 110986569 110986444 ID=MsG0680035704.01.T01:cds;Parent=MsG0680035704.01.T01
Gene Sequence

>MsG0680035704.01.T01

ATGGTGTTTTCCGAAGAAGACATAACAAAACTATTCAGAATCCAAAAAACCCTTCTCCAAATGTTATCCGACAGAAACTACCTTGTCGAAGAAACCGAACTTACCATGTCTCGAGAAGATTTCATCTCCAAATACGGCGAACACATGAAACGAGAACAATTGGAAATCACCAAAACTCACAGAAACAACCCATCTGAAAAAATCTGTGTGTTCTTCTCTGATGATGCTAAACTTGGTGTTAAGATTGTTAGAGGTTTTATTACTAGGATGTTGAACGAGAATGTTGATAATGGGATTTTGGTTTGTCAGAATAAATTAAATCATTATGCTAGAAGTGCTGTTGCTGAAATGAGTTCTGTTGGTTCTAAGCGCCTTGAAGTCTTTCTGGAGGATGAACTGCTGGTGAACATAACAAGGCACGAACGTGTACCTCCACACCAGGTTCTCACTGACGCTGAGAAGAAAGCCTTGCTCAAGAAATACACTGTGAAAGATACTCAGCTACCTAGAATTTTGACGTCGGATCCTGTTGCGAGATATTATGGACTAAGGCGTGGACAAGTTGTCAGGATTATCCGGCCAAGTGAGACTGCAGGCACATATATTACATACCGAATTGCTTCTTGA

Protein sequence

>MsG0680035704.01.T01

MVFSEEDITKLFRIQKTLLQMLSDRNYLVEETELTMSREDFISKYGEHMKREQLEITKTHRNNPSEKICVFFSDDAKLGVKIVRGFITRMLNENVDNGILVCQNKLNHYARSAVAEMSSVGSKRLEVFLEDELLVNITRHERVPPHQVLTDAEKKALLKKYTVKDTQLPRILTSDPVARYYGLRRGQVVRIIRPSETAGTYITYRIAS*