AlfalfaGEDB | MsG0380016342.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016342.01

KEGG: K15559
GO: -
PFAM: PF04818

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016342.01.T01	XP_003602012.1	84.393	346	6	2	138	469	1	312	0	571

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016342.01.T01	Q9CSU0	30.952	168	81	2	144	310	4	137	2.16E-18	89.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048185.01	MsG0380016342.01	0.838082	3.552570e-57	4.706535e-54
MsG0180002140.01	MsG0380016342.01	-0.814039	1.887546e-51	1.252896e-48
MsG0180002489.01	MsG0380016342.01	-0.801148	1.032222e-48	4.893724e-46
MsG0180002491.01	MsG0380016342.01	-0.800573	1.353027e-48	6.321573e-46
MsG0180002686.01	MsG0380016342.01	0.818109	2.326552e-52	1.725745e-49
MsG0180003088.01	MsG0380016342.01	-0.824380	8.328836e-54	7.364910e-51
MsG0180003124.01	MsG0380016342.01	-0.804477	2.120553e-49	1.094421e-46
MsG0180005125.01	MsG0380016342.01	-0.822335	2.503328e-53	2.089215e-50
MsG0180005371.01	MsG0380016342.01	-0.820490	6.671832e-53	5.286665e-50
MsG0180005543.01	MsG0380016342.01	0.862752	4.056553e-64	1.201218e-60

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016342.01.T01	MTR_3g087840	84.393	346	6	2	138	469	1	312	0.0	571
MsG0380016342.01.T01	MTR_7g087450	38.644	295	158	4	194	474	4	289	3.85e-57	199
MsG0380016342.01.T01	MTR_7g026740	34.234	333	160	4	144	462	5	292	1.24e-51	185
MsG0380016342.01.T01	MTR_3g087830	96.667	90	3	0	4	93	590	679	1.36e-51	188
MsG0380016342.01.T01	MTR_6g027180	34.356	326	149	5	144	455	6	280	2.27e-49	179
MsG0380016342.01.T01	MTR_7g087450	31.285	179	103	3	310	474	5	177	1.21e-17	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016342.01.T01	AT5G65180	52.147	326	100	3	144	455	5	288	7.43e-104	320
MsG0380016342.01.T01	AT5G10060	50.755	331	107	4	144	459	5	294	7.45e-95	297
MsG0380016342.01.T01	AT3G26990	33.983	359	155	8	144	479	5	304	1.68e-49	179
MsG0380016342.01.T01	AT3G26990	33.983	359	155	8	144	479	5	304	1.68e-49	179
MsG0380016342.01.T01	AT5G65180	54.167	168	55	2	302	455	1	160	4.03e-48	170

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Find 135 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGTGCAGTATCTAGAC+TGG	0.587180	3:+82217800	MsG0380016342.01.T01:CDS
AAAGGTAAATAATAGATCCG+AGG	0.649093	3:-82214600	None:intergenic
AACCTTAAGGATGCAATGCT+TGG	0.458928	3:+82218082	MsG0380016342.01.T01:CDS
AACTTTGAGAAAGGAGCTCG+AGG	0.607190	3:+82218616	MsG0380016342.01.T01:CDS
AAGAATCTTCGTTATCAAGT+CGG	0.557523	3:-82219576	None:intergenic
AAGACTTTGGAGAAGTGTGC+GGG	0.495339	3:+82220512	MsG0380016342.01.T01:CDS
AAGCAAGACTACATGTTGCC+CGG	0.529913	3:+82220398	MsG0380016342.01.T01:CDS
AAGGATGCAATGCTTGGAGA+GGG	0.591734	3:+82218088	MsG0380016342.01.T01:CDS
AATAGTGGGTCCACTTTCTC+AGG	0.418737	3:-82214538	None:intergenic
AATAGTGTCTGCATTTCATT+TGG	0.356794	3:+82218383	MsG0380016342.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATAAGGTTTGAAGAAC+CGG	-	Chr3:82215092-82215111	None:intergenic	30.0%
AAACCTTTCTGGACTTAAAA+AGG	+	Chr3:82215388-82215407	MsG0380016342.01.T01:intron	30.0%
AAAGGTAAATAATAGATCCG+AGG	-	Chr3:82214603-82214622	None:intergenic	30.0%
AACAGAACTCATGATCAATT+GGG	-	Chr3:82219706-82219725	None:intergenic	30.0%
AAGAATCTTCGTTATCAAGT+CGG	-	Chr3:82219579-82219598	None:intergenic	30.0%
AATAGTGTCTGCATTTCATT+TGG	+	Chr3:82218383-82218402	MsG0380016342.01.T01:CDS	30.0%
AATGCTTTGATAGGTTACTT+TGG	+	Chr3:82217173-82217192	MsG0380016342.01.T01:intron	30.0%
AATTGGGAGAAAAAAAAACG+AGG	-	Chr3:82216546-82216565	None:intergenic	30.0%
AGGAATTTGTGATTGAATTC+TGG	+	Chr3:82217724-82217743	MsG0380016342.01.T01:CDS	30.0%
ATTTGTGATTGAATTCTGGA+AGG	+	Chr3:82217728-82217747	MsG0380016342.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	82214277	82220552	82214277	ID=MsG0380016342.01;Name=MsG0380016342.01
Chr3	mRNA	82214277	82220552	82214277	ID=MsG0380016342.01.T01;Parent=MsG0380016342.01;Name=MsG0380016342.01.T01;_AED=0.48;_eAED=0.55;_QI=0\|0.5\|0.33\|1\|0.75\|0.77\|9\|0\|550
Chr3	exon	82214277	82214660	82214277	ID=MsG0380016342.01.T01:exon:11645;Parent=MsG0380016342.01.T01
Chr3	exon	82216643	82216775	82216643	ID=MsG0380016342.01.T01:exon:11646;Parent=MsG0380016342.01.T01
Chr3	exon	82217496	82217821	82217496	ID=MsG0380016342.01.T01:exon:11647;Parent=MsG0380016342.01.T01
Chr3	exon	82218037	82218216	82218037	ID=MsG0380016342.01.T01:exon:11648;Parent=MsG0380016342.01.T01
Chr3	exon	82218354	82218510	82218354	ID=MsG0380016342.01.T01:exon:11649;Parent=MsG0380016342.01.T01
Chr3	exon	82218597	82218697	82218597	ID=MsG0380016342.01.T01:exon:11650;Parent=MsG0380016342.01.T01
Chr3	exon	82218858	82218893	82218858	ID=MsG0380016342.01.T01:exon:11651;Parent=MsG0380016342.01.T01
Chr3	exon	82219535	82219646	82219535	ID=MsG0380016342.01.T01:exon:11652;Parent=MsG0380016342.01.T01
Chr3	exon	82220329	82220552	82220329	ID=MsG0380016342.01.T01:exon:11653;Parent=MsG0380016342.01.T01
Chr3	CDS	82214277	82214660	82214277	ID=MsG0380016342.01.T01:cds;Parent=MsG0380016342.01.T01
Chr3	CDS	82216643	82216775	82216643	ID=MsG0380016342.01.T01:cds;Parent=MsG0380016342.01.T01
Chr3	CDS	82217496	82217821	82217496	ID=MsG0380016342.01.T01:cds;Parent=MsG0380016342.01.T01
Chr3	CDS	82218037	82218216	82218037	ID=MsG0380016342.01.T01:cds;Parent=MsG0380016342.01.T01
Chr3	CDS	82218354	82218510	82218354	ID=MsG0380016342.01.T01:cds;Parent=MsG0380016342.01.T01
Chr3	CDS	82218597	82218697	82218597	ID=MsG0380016342.01.T01:cds;Parent=MsG0380016342.01.T01
Chr3	CDS	82218858	82218893	82218858	ID=MsG0380016342.01.T01:cds;Parent=MsG0380016342.01.T01
Chr3	CDS	82219535	82219646	82219535	ID=MsG0380016342.01.T01:cds;Parent=MsG0380016342.01.T01
Chr3	CDS	82220329	82220552	82220329	ID=MsG0380016342.01.T01:cds;Parent=MsG0380016342.01.T01

Gene Sequence

>MsG0380016342.01.T01

ATGGCCTACAATGGTGGGCGGCTCTTAATTGCTGAGTTTGTTGATCCTGAAGAAGTGAAAATGAAGTTAGAAGCTCCTCCCACTCCTACTCCTGCTGTCAACAGTGCTCCAATAGTTCCTCCCGCACCACCCTCTTCACAGCCAGAGGCTTCCCCTCGTCAGCACAGGGAGCAACATCTTCCAGTCACTCTCCCACCTCCGCCACCATTGGTAAGGCCCCCACCAGTTGCTAGGGAACGCCTTCCATCGCCACCACCCCTTCCTGAGAAAGTGGACCCACTATTGTCACTCTGGATGATCTCTTCCGTAAAACCACTGCAACTCCTCGGATCTATTATTTACCTTTGTCAGAAGAGCAAGTTGCTGCGAAACTTGCGGCTCAGGGGTTTCGGTTCCGTTGAAGGGAAAGAGATGAGCACGAAAAATCAGTTCAAGGAGGCGATACTTGCGGATAAACTCGCCAAGCTTAATAGTACTCAGCAGTGCATTGAAAGTATCCTTTTTTTTTTTCTTCTCTCTACTGAAAGAGGCTTTTGTTGTTGTGTTTACTACTTGTTGGTGCGAAGTAGCTTGTTGTCTTTAACTTTTGACATAGCTTTATCACATTGGTGTATATTTCACCGGAGCAATGCAGAACAAGTTGTTGCGACATGGAAAAACCAATTTGACAAATCAGATATGATTCATAGAATCCCCCTTTTGTGGCTTGCAAATGACATCCTGCAGAACAGCAAGCGTAACGGAAAGGAATTTGTGATTGAATTCTGGAAGGTTCTTCCTGCAGCACTTAAAGATGTTATTGCGAAAGATGATGATCGTGGAAAGCGTGCAGTATCTAGACTGTTTGAAGTATGGGAGCAAAGGAATGTGTTTGGGTCTCGAGTACCAAACCTTAAGGATGCAATGCTTGGAGAGGGTTCTCCTCCGCCATTGGAATTCAGCAAAAAAAGACCACGTTCTGCAAGAATTATGAAAAGGGATTCTGTAAAAATTTTGAAAAGGGATTCTCGCTCTATCAAATCGAAATTGTCCATCGGAGGAACAACAGAAAAAATAGTGTCTGCATTTCATTTGGTGCTCGGTGAACAGGCCAATGAAGATGCAGAGATGAGTAAATGCAAGTCTGCTGTGCAGCTTGTAAGGAAGATAGAGAAAGATGTTGATATTGCATGTGCCACTGCTAAGGATCCTAAGCGTAAAACTTTGAGAAAGGAGCTCGAGGAGCAACAAAGTCTATTGAAATATTGCATAGAAAAACTTAAATTAGTTGAAGAAAATAGAGAATCGGATCTGGAGAATGTTCGTACACAGATGCAGGTTGCACAAGCACAAATAGAAGAGGCTAGCAACATGCAAAACCGACTTGATAACGAAGATTCTTCACAGAATGCATCAATTAAAACTTCCAATCAGAAGCAGCAACTAAAAACAAATTCTGGAGATTCAGATTTCATTTTTATGCAATGGTATACTTGGAACAAAGTTCATAAACGTATGGAAGCAAGACTACATGTTGCCCGGGAAGTGAAAGGAAACTGGCTTACCCAGAATCTGAATACCAAGTGGGTTGAATGTGCTGCTCTGTTTCAGAGATTGAAGGAAAACAGAGGGGAAGACTTTGGAGAAGTGTGCGGGGTGGGGGAGGGAAAGTGA

Protein sequence

>MsG0380016342.01.T01

MAYNGGRLLIAEFVDPEEVKMKLEAPPTPTPAVNSAPIVPPAPPSSQPEASPRQHREQHLPVTLPPPPPLVRPPPVARERLPSPPPLPEKVDPLLSLWMISSVKPLQLLGSIIYLCQKSKLLRNLRLRGFGSVEGKEMSTKNQFKEAILADKLAKLNSTQQCIESILFFFLLSTERGFCCCVYYLLVRSSLLSLTFDIALSHWCIFHRSNAEQVVATWKNQFDKSDMIHRIPLLWLANDILQNSKRNGKEFVIEFWKVLPAALKDVIAKDDDRGKRAVSRLFEVWEQRNVFGSRVPNLKDAMLGEGSPPPLEFSKKRPRSARIMKRDSVKILKRDSRSIKSKLSIGGTTEKIVSAFHLVLGEQANEDAEMSKCKSAVQLVRKIEKDVDIACATAKDPKRKTLRKELEEQQSLLKYCIEKLKLVEENRESDLENVRTQMQVAQAQIEEASNMQNRLDNEDSSQNASIKTSNQKQQLKTNSGDSDFIFMQWYTWNKVHKRMEARLHVAREVKGNWLTQNLNTKWVECAALFQRLKENRGEDFGEVCGVGEGK*