AlfalfaGEDB | MsG0680033793.01

M. sativa cultivar ZhongmuNo.1 / MsG0680033793.01

KEGG: -
GO: GO:0051087
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680033793.01.T01	XP_013442804.1	67.582	364	53	7	1	311	4	355	7.09E-144	419

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680033793.01.T01	Q0WUQ1	38.304	342	111	10	32	311	39	342	4.79E-55	185

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680033793.01.T01	A0A072TGZ0	67.582	364	53	7	1	311	4	355	3.38e-144	419

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0680033793.01	0.810029	1.412507e-50	8.423943e-48
MsG0080048058.01	MsG0680033793.01	0.850316	1.837256e-60	3.584587e-57
MsG0180000001.01	MsG0680033793.01	0.841932	3.519734e-58	5.252198e-55
MsG0180000295.01	MsG0680033793.01	0.830099	3.553084e-55	3.706771e-52
MsG0180000364.01	MsG0680033793.01	0.806841	6.762778e-50	3.708858e-47
MsG0180001117.01	MsG0680033793.01	0.852239	5.258728e-61	1.091848e-57
MsG0180001173.01	MsG0680033793.01	0.801515	8.684232e-49	4.155277e-46
MsG0180001237.01	MsG0680033793.01	0.817069	3.992324e-52	2.878210e-49
MsG0180001566.01	MsG0680033793.01	0.827627	1.409353e-54	1.367898e-51
MsG0180004754.01	MsG0680033793.01	0.804601	1.997252e-49	1.034123e-46
MsG0180005188.01	MsG0680033793.01	0.816179	6.318552e-52	4.445669e-49
MsG0180005443.01	MsG0680033793.01	0.828006	1.142511e-54	1.121472e-51
MsG0180005451.01	MsG0680033793.01	0.827766	1.304869e-54	1.271755e-51
MsG0180005493.01	MsG0680033793.01	0.872164	3.924742e-67	1.625512e-63
MsG0180006235.01	MsG0680033793.01	0.812986	3.216909e-51	2.075078e-48
MsG0680030740.01	MsG0680033793.01	0.811580	6.520092e-51	4.051121e-48
MsG0680033793.01	MsG0780036663.01	0.800948	1.134251e-48	5.350347e-46
MsG0680033793.01	MsG0880042547.01	0.806278	8.891447e-50	4.806428e-47
MsG0680033793.01	MsG0880044803.01	0.806923	6.498559e-50	3.571411e-47
MsG0680033793.01	MsG0880046027.01	0.845926	2.994771e-59	5.070185e-56
MsG0680033793.01	MsG0880046086.01	0.827368	1.625741e-54	1.566562e-51
MsG0680033793.01	MsG0880046132.01	0.801481	8.824714e-49	4.218926e-46
MsG0680033793.01	MsG0880047183.01	0.822413	2.400957e-53	2.008264e-50
MsG0480020331.01	MsG0680033793.01	0.820502	6.630272e-53	5.255345e-50
MsG0480021158.01	MsG0680033793.01	0.803181	3.940604e-49	1.967228e-46
MsG0480021772.01	MsG0680033793.01	0.807864	4.104978e-50	2.311788e-47
MsG0480022094.01	MsG0680033793.01	0.802736	4.868990e-49	2.403356e-46
MsG0480022228.01	MsG0680033793.01	0.818094	2.344933e-52	1.738577e-49
MsG0480022325.01	MsG0680033793.01	0.807987	3.864165e-50	2.183323e-47
MsG0480022717.01	MsG0680033793.01	0.815702	8.072585e-52	5.606194e-49
MsG0480023053.01	MsG0680033793.01	0.830078	3.596079e-55	3.749176e-52
MsG0480023620.01	MsG0680033793.01	0.829488	5.004388e-55	5.129260e-52
MsG0480023755.01	MsG0680033793.01	0.818486	1.911842e-52	1.433005e-49
MsG0580024618.01	MsG0680033793.01	0.825933	3.577338e-54	3.307205e-51
MsG0580024749.01	MsG0680033793.01	0.813976	1.948889e-51	1.291345e-48
MsG0380015713.01	MsG0680033793.01	0.818252	2.160298e-52	1.608678e-49
MsG0380017240.01	MsG0680033793.01	0.829210	5.847010e-55	5.944912e-52
MsG0580028060.01	MsG0680033793.01	0.844675	6.527488e-59	1.061667e-55
MsG0280006692.01	MsG0680033793.01	0.813969	1.955603e-51	1.295597e-48
MsG0280007321.01	MsG0680033793.01	0.801991	6.934568e-49	3.358302e-46
MsG0280007790.01	MsG0680033793.01	0.800239	1.582283e-48	7.330278e-46
MsG0280008614.01	MsG0680033793.01	0.823578	1.284652e-53	1.110513e-50
MsG0280008909.01	MsG0680033793.01	0.820720	5.908647e-53	4.711722e-50
MsG0280009417.01	MsG0680033793.01	0.801705	7.938349e-49	3.816582e-46
MsG0280010001.01	MsG0680033793.01	0.816848	4.475264e-52	3.206886e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680033793.01.T01	MTR_0086s0010	67.582	364	53	7	1	311	4	355	8.58e-148	419
MsG0680033793.01.T01	MTR_1g101440	44.134	358	98	10	21	311	11	333	1.28e-71	225
MsG0680033793.01.T01	MTR_4g102740	33.441	311	103	8	20	276	20	280	3.55e-35	129
MsG0680033793.01.T01	MTR_2g018860	30.996	271	151	10	7	275	7	243	1.63e-27	107
MsG0680033793.01.T01	MTR_2g018860	36.095	169	55	2	78	193	19	187	3.17e-24	97.8
MsG0680033793.01.T01	MTR_7g069610	29.289	239	87	6	16	193	3	220	9.77e-16	75.5
MsG0680033793.01.T01	MTR_6g022020	33.113	151	81	6	15	163	23	155	4.08e-14	69.3
MsG0680033793.01.T01	MTR_4g017810	45.238	84	46	0	91	174	51	134	2.16e-13	69.3
MsG0680033793.01.T01	MTR_6g022040	33.333	144	65	4	15	152	23	141	2.91e-12	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680033793.01.T01	AT5G52060	38.304	342	111	10	32	311	39	342	4.88e-56	185
MsG0680033793.01.T01	AT5G07220	35.127	353	118	10	14	311	7	303	1.22e-46	159
MsG0680033793.01.T01	AT5G62100	36.688	308	134	10	29	310	12	284	2.20e-46	158
MsG0680033793.01.T01	AT5G62100	36.129	310	144	9	29	310	12	295	3.12e-46	158
MsG0680033793.01.T01	AT5G62100	49.660	147	61	1	29	175	12	145	1.59e-38	134
MsG0680033793.01.T01	AT5G62100	49.660	147	61	1	29	175	12	145	1.59e-38	134
MsG0680033793.01.T01	AT5G62100	49.324	148	62	1	28	175	11	145	3.11e-37	132
MsG0680033793.01.T01	AT5G62100	49.324	148	62	1	28	175	11	145	4.61e-37	132
MsG0680033793.01.T01	AT5G14360	33.884	121	63	3	31	150	47	151	3.88e-13	66.6

Find 93 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAGTCAAGAGAAAAGGATTT+TGG	0.200313	6:+73656016	MsG0680033793.01.T01:CDS
GTGACATTGGTTGGTGTTGC+AGG	0.234039	6:+73655843	MsG0680033793.01.T01:CDS
GAGTTGTTGTTACTACAAAA+TGG	0.278243	6:+73657307	MsG0680033793.01.T01:CDS
CTGCAACCACCTGAGCTTAT+AGG	0.279994	6:-73655271	None:intergenic
CTTAGGAGGACCTGAATTAT+TGG	0.280440	6:-73657403	None:intergenic
TGGTTCCTACAATTAGAGTT+AGG	0.283648	6:+73655382	MsG0680033793.01.T01:CDS
CTGTAAAGATCTTTGCTTTG+AGG	0.303482	6:+73654787	MsG0680033793.01.T01:five_prime_UTR
AGGTGGTTGCAGAGCTGAAC+CGG	0.333790	6:+73655282	MsG0680033793.01.T01:CDS
TCTTCTTGTTGTTCTTGAAT+TGG	0.338014	6:-73657219	None:intergenic
ATTCATTCAAATGGTTATCA+TGG	0.346114	6:+73657186	MsG0680033793.01.T01:CDS
GCTAAGAATTCTATACAAAA+TGG	0.347968	6:+73657081	MsG0680033793.01.T01:CDS
GAGAATCAATTCCTCATCAT+TGG	0.385614	6:+73654626	MsG0680033793.01.T01:five_prime_UTR
AGACAAAGAGAGGGATTCTA+AGG	0.387250	6:+73655932	MsG0680033793.01.T01:CDS
TCTTTGAAGTTCTTGAGAAA+TGG	0.387398	6:-73654605	None:intergenic
CCTTCAATGACCAATAATTC+AGG	0.387889	6:+73657393	MsG0680033793.01.T01:CDS
AACATGTTCTAGCAGCCTTT+TGG	0.390705	6:+73654997	MsG0680033793.01.T01:five_prime_UTR
GTAGATGGAAATGTGATTAA+TGG	0.398757	6:-73657351	None:intergenic
ATTGTGGACTTGTGGAATGC+TGG	0.399723	6:+73654958	MsG0680033793.01.T01:five_prime_UTR
ATTAGAGTTAGGGTCAAGTT+TGG	0.404587	6:+73655393	MsG0680033793.01.T01:CDS
TTCAAATCGTAACCCTGCTT+TGG	0.405274	6:+73655362	MsG0680033793.01.T01:CDS
GAAGAATCAATAACTTTAGT+AGG	0.406720	6:-73654849	None:intergenic
AGATTAGCTTGGAAGTAGAT+AGG	0.410787	6:+73656087	MsG0680033793.01.T01:CDS
CCTCAACAAAAGCATTCAAA+TGG	0.422309	6:+73657129	MsG0680033793.01.T01:CDS
GGTTCCTACAATTAGAGTTA+GGG	0.435115	6:+73655383	MsG0680033793.01.T01:CDS
CTAATTGTAGGAACCAAAGC+AGG	0.435383	6:-73655375	None:intergenic
TTGACCCTAACTCTAATTGT+AGG	0.437016	6:-73655387	None:intergenic
TTGGAAGTAGATAGGCTTGC+CGG	0.437951	6:+73656095	MsG0680033793.01.T01:CDS
AAAATGTTGTCAGGACCAAC+TGG	0.440623	6:+73655876	MsG0680033793.01.T01:CDS
CCTGAATTATTGGTCATTGA+AGG	0.451892	6:-73657393	None:intergenic
TGACATTGGTTGGTGTTGCA+GGG	0.456584	6:+73655844	MsG0680033793.01.T01:CDS
CATGGTAATAATAAGACAAA+TGG	0.457366	6:+73655238	MsG0680033793.01.T01:CDS
CAGAGCTGAACCGGGTTCAA+TGG	0.458677	6:+73655291	MsG0680033793.01.T01:CDS
AAGAATTCCCAACTGAACTT+AGG	0.466020	6:-73657420	None:intergenic
AGTTGTTGTTACTACAAAAT+GGG	0.466295	6:+73657308	MsG0680033793.01.T01:CDS
TTGTGGACTTGTGGAATGCT+GGG	0.467379	6:+73654959	MsG0680033793.01.T01:five_prime_UTR
TTGTGGAATGCTGGGGTCAG+AGG	0.476312	6:+73654967	MsG0680033793.01.T01:five_prime_UTR
TCTTGATGTAGTTGGTGTAA+AGG	0.476551	6:+73655959	MsG0680033793.01.T01:CDS
CTGAACCGGGTTCAATGGAA+TGG	0.478419	6:+73655296	MsG0680033793.01.T01:CDS
CTCTCGTAATTGTGGACTTG+TGG	0.486669	6:+73654950	MsG0680033793.01.T01:five_prime_UTR
ATCCTATTAGTCAAGAGAAA+AGG	0.488781	6:+73656009	MsG0680033793.01.T01:CDS
ATCTATCTCACAGATTAGCT+TGG	0.490471	6:+73656076	MsG0680033793.01.T01:CDS
TCAAAAGTATGTTGAAACAT+TGG	0.493311	6:+73657047	MsG0680033793.01.T01:CDS
AAATGTGGCTGAAATATTGA+TGG	0.493651	6:-73654762	None:intergenic
GTTTCTTCACCTATAAGCTC+AGG	0.498812	6:+73655262	MsG0680033793.01.T01:CDS
TGTGATTTGGTGACATTGGT+TGG	0.499091	6:+73655834	MsG0680033793.01.T01:CDS
CACCGACCCAATTCACCAAA+AGG	0.500699	6:-73655012	None:intergenic
CAGGTCCTCCTAAGTTCAGT+TGG	0.500744	6:+73657412	MsG0680033793.01.T01:CDS
GATTTGAAGAAAATGTTGTC+AGG	0.501668	6:+73655867	MsG0680033793.01.T01:CDS
ATTGAGGAAGAATGCTAAGA+TGG	0.502442	6:+73656040	MsG0680033793.01.T01:CDS
TGAAAGAAGATGTGAGGATG+AGG	0.503174	6:+73655203	MsG0680033793.01.T01:exon
TTCATTCAAATGGTTATCAT+GGG	0.504869	6:+73657187	MsG0680033793.01.T01:CDS
ATGGAATGGGAGATGAGGCC+AGG	0.517312	6:+73655310	MsG0680033793.01.T01:CDS
TGTTTGAACACCATTCCACC+TGG	0.526653	6:-73655328	None:intergenic
ATGAGGAATAATCATAATCA+TGG	0.527299	6:+73655220	MsG0680033793.01.T01:CDS
CTCAACAAAAGCATTCAAAT+GGG	0.530855	6:+73657130	MsG0680033793.01.T01:CDS
GCATTCAAATGGGAAACGAT+TGG	0.532681	6:+73657140	MsG0680033793.01.T01:CDS
AGGTCCTCCTAAGTTCAGTT+GGG	0.534106	6:+73657413	MsG0680033793.01.T01:CDS
GATGAAATCAATGAGAAGCT+AGG	0.534284	6:-73654669	None:intergenic
GATGGAAATGTGATTAATGG+TGG	0.538741	6:-73657348	None:intergenic
GGAGATGAGGCCAGGTGGAA+TGG	0.539106	6:+73655318	MsG0680033793.01.T01:CDS
GAAGTTCTTGAGAAATGGAA+GGG	0.539458	6:-73654600	None:intergenic
GACATTGGTTGGTGTTGCAG+GGG	0.543960	6:+73655845	MsG0680033793.01.T01:CDS
TGAAGTTCTTGAGAAATGGA+AGG	0.545725	6:-73654601	None:intergenic
TGAACCGGGTTCAATGGAAT+GGG	0.545913	6:+73655297	MsG0680033793.01.T01:CDS
CAAATCTAAACTAGTTCTTG+TGG	0.548510	6:+73655983	MsG0680033793.01.T01:CDS
TCACAACTATGCAACAAAAG+TGG	0.555123	6:-73655177	None:intergenic
TCTTCACCTATAAGCTCAGG+TGG	0.558010	6:+73655265	MsG0680033793.01.T01:CDS
GAACAACAACACCAACCCTC+AGG	0.567003	6:+73657285	MsG0680033793.01.T01:CDS
ATCTCCCATTCCATTGAACC+CGG	0.567397	6:-73655301	None:intergenic
AATTCCCAACTGAACTTAGG+AGG	0.568401	6:-73657417	None:intergenic
AAGTTGTGATTTGGTGACAT+TGG	0.568698	6:+73655830	MsG0680033793.01.T01:intron
ATGGAAATGTGATTAATGGT+GGG	0.575408	6:-73657347	None:intergenic
TATTAGTTCACAAGCCACAT+TGG	0.579057	6:+73655437	MsG0680033793.01.T01:CDS
AGTAAACAATTCCAATGATG+AGG	0.587569	6:-73654637	None:intergenic
GTTGTGGATGTAGATGTAGA+TGG	0.595278	6:-73657366	None:intergenic
GTAGTAACAACAACTCCTGA+GGG	0.597798	6:-73657300	None:intergenic
GGTGGTTGCAGAGCTGAACC+GGG	0.606693	6:+73655283	MsG0680033793.01.T01:CDS
TGTAGTAACAACAACTCCTG+AGG	0.608014	6:-73657301	None:intergenic
AGGGTTACGATTTGAATCAG+TGG	0.610632	6:-73655355	None:intergenic
GTTCAATGGAATGGGAGATG+AGG	0.632010	6:+73655305	MsG0680033793.01.T01:CDS
AATGTGGCTGAAATATTGAT+GGG	0.632457	6:-73654761	None:intergenic
GGTCATTGAAGGAGTAGTTG+TGG	0.633027	6:-73657382	None:intergenic
AAGATCTTTACAGCAAAATG+TGG	0.634708	6:-73654777	None:intergenic
TAACAACAACTCCTGAGGGT+TGG	0.635228	6:-73657296	None:intergenic
TCTTGATGATGTAAACCAGT+TGG	0.653777	6:-73655891	None:intergenic
GAAGTAGATAGGCTTGCCGG+AGG	0.657063	6:+73656098	MsG0680033793.01.T01:CDS
TGTGAAAAGATTTACCAATG+TGG	0.658850	6:-73655451	None:intergenic
GAATGGGAGATGAGGCCAGG+TGG	0.662952	6:+73655313	MsG0680033793.01.T01:CDS
TGGAAATGTGATTAATGGTG+GGG	0.663979	6:-73657346	None:intergenic
AAGTAGATAGGCTTGCCGGA+GGG	0.673781	6:+73656099	MsG0680033793.01.T01:CDS
TAATTGTAGGAACCAAAGCA+GGG	0.677158	6:-73655374	None:intergenic
TGAAAGTGAAAGAAGATGTG+AGG	0.698225	6:+73655197	MsG0680033793.01.T01:five_prime_UTR
TGTGGACTTGTGGAATGCTG+GGG	0.714561	6:+73654960	MsG0680033793.01.T01:five_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATATCAAAATAAAAACA+AGG	-	Chr6:73656719-73656738	None:intergenic	10.0%
!!	ATTTGATGAATAAATTAAAT+TGG	+	Chr6:73656382-73656401	MsG0680033793.01.T01:intron	10.0%
!!!	TTTATTTTTTTCTTACTTAT+TGG	+	Chr6:73654709-73654728	MsG0680033793.01.T01:five_prime_UTR	10.0%
!!!	AAAACAATAAACAGTTATTT+TGG	-	Chr6:73656954-73656973	None:intergenic	15.0%
!!!	ATTATTTTTATATTTCCATG+CGG	+	Chr6:73656805-73656824	MsG0680033793.01.T01:intron	15.0%
!!!	TACTTGTTCATTAATTTTAT+GGG	+	Chr6:73656988-73657007	MsG0680033793.01.T01:intron	15.0%
!!!	TATTTTTTAAAGTTGTGATT+TGG	+	Chr6:73655821-73655840	MsG0680033793.01.T01:intron	15.0%
!!!	TTACTTGTTCATTAATTTTA+TGG	+	Chr6:73656987-73657006	MsG0680033793.01.T01:intron	15.0%
!!	ATCTAATTATTTGTCCATTA+GGG	-	Chr6:73656294-73656313	None:intergenic	20.0%
!!	GAGAAAAAAAACAAAATTTG+AGG	-	Chr6:73654929-73654948	None:intergenic	20.0%
!!	TATCTAATTATTTGTCCATT+AGG	-	Chr6:73656295-73656314	None:intergenic	20.0%
!!	TGAATGAATATAAAAATGAG+TGG	-	Chr6:73654546-73654565	None:intergenic	20.0%
!!	TTTGAATCAATAATTAGCAA+AGG	+	Chr6:73656553-73656572	MsG0680033793.01.T01:intron	20.0%
!!!	TAACCATTTGAATGAATTTT+TGG	-	Chr6:73657183-73657202	None:intergenic	20.0%
!!!	TAATGGACAAATAATTAGAT+AGG	+	Chr6:73656294-73656313	MsG0680033793.01.T01:intron	20.0%
!!!	TTGCAGATTAAATTTTTGTT+GGG	+	Chr6:73654812-73654831	MsG0680033793.01.T01:five_prime_UTR	20.0%
!!!	TTTGCAGATTAAATTTTTGT+TGG	+	Chr6:73654811-73654830	MsG0680033793.01.T01:five_prime_UTR	20.0%
!!!	TTTTTCTTACTTATTGGTTA+AGG	+	Chr6:73654715-73654734	MsG0680033793.01.T01:five_prime_UTR	20.0%
!	AATCAATAATTAGCAAAGGT+GGG	+	Chr6:73656557-73656576	MsG0680033793.01.T01:intron	25.0%
!	AATCAATTGCTTAAATTGGA+TGG	+	Chr6:73656624-73656643	MsG0680033793.01.T01:intron	25.0%
!	ACCTTCAAAATGTTTCAAAT+TGG	-	Chr6:73657018-73657037	None:intergenic	25.0%
!	ACTTTATGAGTCATACAATT+TGG	+	Chr6:73656254-73656273	MsG0680033793.01.T01:intron	25.0%
!	ATGAGGAATAATCATAATCA+TGG	+	Chr6:73655220-73655239	MsG0680033793.01.T01:CDS	25.0%
!	ATTAGTTACTGGAATTGATT+AGG	+	Chr6:73656522-73656541	MsG0680033793.01.T01:intron	25.0%
!	ATTCATTCAAATGGTTATCA+TGG	+	Chr6:73657186-73657205	MsG0680033793.01.T01:CDS	25.0%
!	ATTGAGTACTAATTAGTTAC+TGG	+	Chr6:73656511-73656530	MsG0680033793.01.T01:intron	25.0%
!	CAACCAAAAATTCATTCAAA+TGG	+	Chr6:73657177-73657196	MsG0680033793.01.T01:CDS	25.0%
!	CATGGTAATAATAAGACAAA+TGG	+	Chr6:73655238-73655257	MsG0680033793.01.T01:CDS	25.0%
!	GAAGAATCAATAACTTTAGT+AGG	-	Chr6:73654852-73654871	None:intergenic	25.0%
!	GATGAATCAATTGCTTAAAT+TGG	+	Chr6:73656620-73656639	MsG0680033793.01.T01:intron	25.0%
!	GCTAAGAATTCTATACAAAA+TGG	+	Chr6:73657081-73657100	MsG0680033793.01.T01:CDS	25.0%
!	TAAATATGAGGTAATACACT+TGG	-	Chr6:73656927-73656946	None:intergenic	25.0%
!	TCAAAAGAAGAGAAATTACT+TGG	-	Chr6:73655768-73655787	None:intergenic	25.0%
!	TTCAAACAATTATATGAGTG+AGG	+	Chr6:73656453-73656472	MsG0680033793.01.T01:intron	25.0%
!	TTCATTCAAATGGTTATCAT+GGG	+	Chr6:73657187-73657206	MsG0680033793.01.T01:CDS	25.0%
!!	AGATTAAATTTTTGTTGGGT+TGG	+	Chr6:73654816-73654835	MsG0680033793.01.T01:five_prime_UTR	25.0%
!!	AGTTGTTGTTACTACAAAAT+GGG	+	Chr6:73657308-73657327	MsG0680033793.01.T01:CDS	25.0%
!!	TCAAAAGTATGTTGAAACAT+TGG	+	Chr6:73657047-73657066	MsG0680033793.01.T01:CDS	25.0%
!!!	TCCAATTTGAAACATTTTGA+AGG	+	Chr6:73657014-73657033	MsG0680033793.01.T01:intron	25.0%
!!!	TTTGAAACATTTTGAAGGTA+AGG	+	Chr6:73657019-73657038	MsG0680033793.01.T01:intron	25.0%
	AAATGTGGCTGAAATATTGA+TGG	-	Chr6:73654765-73654784	None:intergenic	30.0%
	AACAATTATATGAGTGAGGT+TGG	+	Chr6:73656457-73656476	MsG0680033793.01.T01:intron	30.0%
	AAGATCTTTACAGCAAAATG+TGG	-	Chr6:73654780-73654799	None:intergenic	30.0%
	AATGTGGCTGAAATATTGAT+GGG	-	Chr6:73654764-73654783	None:intergenic	30.0%
	AGTAAACAATTCCAATGATG+AGG	-	Chr6:73654640-73654659	None:intergenic	30.0%
	ATCCTATTAGTCAAGAGAAA+AGG	+	Chr6:73656009-73656028	MsG0680033793.01.T01:CDS	30.0%
	ATGGAAATGTGATTAATGGT+GGG	-	Chr6:73657350-73657369	None:intergenic	30.0%
	CAAATTGCAAAGAAAAATGC+AGG	+	Chr6:73656668-73656687	MsG0680033793.01.T01:intron	30.0%
	GAATCAATAATTAGCAAAGG+TGG	+	Chr6:73656556-73656575	MsG0680033793.01.T01:intron	30.0%
	GATTTGAAGAAAATGTTGTC+AGG	+	Chr6:73655867-73655886	MsG0680033793.01.T01:CDS	30.0%
	GTAGATGGAAATGTGATTAA+TGG	-	Chr6:73657354-73657373	None:intergenic	30.0%
	TCAAAAATCGTAATGAAGCA+TGG	-	Chr6:73655613-73655632	None:intergenic	30.0%
	TCATTGACCAATTTGACTAA+CGG	-	Chr6:73656847-73656866	None:intergenic	30.0%
	TGTCAAATTATTAGCTGTGT+CGG	+	Chr6:73655564-73655583	MsG0680033793.01.T01:intron	30.0%
	TGTGAAAAGATTTACCAATG+TGG	-	Chr6:73655454-73655473	None:intergenic	30.0%
	TTGGATGGTATAATTACTGA+TGG	+	Chr6:73656639-73656658	MsG0680033793.01.T01:intron	30.0%
!	ATCCTTTTCTCTTGACTAAT+AGG	-	Chr6:73656014-73656033	None:intergenic	30.0%
!	CAAATCTAAACTAGTTCTTG+TGG	+	Chr6:73655983-73656002	MsG0680033793.01.T01:CDS	30.0%
!	GAGTTGTTGTTACTACAAAA+TGG	+	Chr6:73657307-73657326	MsG0680033793.01.T01:CDS	30.0%
!	GTTTTACAAAGACAAAGAGA+GGG	+	Chr6:73655923-73655942	MsG0680033793.01.T01:CDS	30.0%
!	TAGTCAAGAGAAAAGGATTT+TGG	+	Chr6:73656016-73656035	MsG0680033793.01.T01:CDS	30.0%
!	TGTTTTACAAAGACAAAGAG+AGG	+	Chr6:73655922-73655941	MsG0680033793.01.T01:CDS	30.0%
!	TTCGAGTTTAAATCTTACTC+AGG	-	Chr6:73655687-73655706	None:intergenic	30.0%
!!	CTCAACAAAAGCATTCAAAT+GGG	+	Chr6:73657130-73657149	MsG0680033793.01.T01:CDS	30.0%
!!	TCTTCTTGTTGTTCTTGAAT+TGG	-	Chr6:73657222-73657241	None:intergenic	30.0%
!!	TCTTTGAAGTTCTTGAGAAA+TGG	-	Chr6:73654608-73654627	None:intergenic	30.0%
!!!	AATTGGTGATTGACTTGTTT+TGG	+	Chr6:73656399-73656418	MsG0680033793.01.T01:intron	30.0%
!!!	AGAAAAGGATTTTGGAATTG+AGG	+	Chr6:73656024-73656043	MsG0680033793.01.T01:CDS	30.0%
!!!	AGCTCATTTGAGTTTTTTCT+AGG	-	Chr6:73657249-73657268	None:intergenic	30.0%
!!!	TATTTTGGTCGCTAAATATG+AGG	-	Chr6:73656939-73656958	None:intergenic	30.0%
	AAGAATTCCCAACTGAACTT+AGG	-	Chr6:73657423-73657442	None:intergenic	35.0%
	ATCGTAATGAAGCATGGATA+CGG	-	Chr6:73655607-73655626	None:intergenic	35.0%
	ATTAGAGTTAGGGTCAAGTT+TGG	+	Chr6:73655393-73655412	MsG0680033793.01.T01:CDS	35.0%
	ATTGAGGAAGAATGCTAAGA+TGG	+	Chr6:73656040-73656059	MsG0680033793.01.T01:CDS	35.0%
	CACTTGGTCTCTAAATATGT+CGG	-	Chr6:73656911-73656930	None:intergenic	35.0%
	CCTGAATTATTGGTCATTGA+AGG	-	Chr6:73657396-73657415	None:intergenic	35.0%
	CCTTCAATGACCAATAATTC+AGG	+	Chr6:73657393-73657412	MsG0680033793.01.T01:CDS	35.0%
	CTGTAAAGATCTTTGCTTTG+AGG	+	Chr6:73654787-73654806	MsG0680033793.01.T01:five_prime_UTR	35.0%
	GAAGTTCTTGAGAAATGGAA+GGG	-	Chr6:73654603-73654622	None:intergenic	35.0%
	GACTCATGTAATTCGAAGTT+CGG	+	Chr6:73655638-73655657	MsG0680033793.01.T01:intron	35.0%
	GAGAATCAATTCCTCATCAT+TGG	+	Chr6:73654626-73654645	MsG0680033793.01.T01:five_prime_UTR	35.0%
	GATGAAATCAATGAGAAGCT+AGG	-	Chr6:73654672-73654691	None:intergenic	35.0%
	GATGGAAATGTGATTAATGG+TGG	-	Chr6:73657351-73657370	None:intergenic	35.0%
	GGTTCCTACAATTAGAGTTA+GGG	+	Chr6:73655383-73655402	MsG0680033793.01.T01:CDS	35.0%
	GTGTATTCCGTTAGTCAAAT+TGG	+	Chr6:73656837-73656856	MsG0680033793.01.T01:intron	35.0%
	TAATTGTAGGAACCAAAGCA+GGG	-	Chr6:73655377-73655396	None:intergenic	35.0%
	TATTAGTTCACAAGCCACAT+TGG	+	Chr6:73655437-73655456	MsG0680033793.01.T01:CDS	35.0%
	TCACAACTATGCAACAAAAG+TGG	-	Chr6:73655180-73655199	None:intergenic	35.0%
	TCTATTGCATTACTCCCTAA+TGG	+	Chr6:73656277-73656296	MsG0680033793.01.T01:intron	35.0%
	TGAAAGTGAAAGAAGATGTG+AGG	+	Chr6:73655197-73655216	MsG0680033793.01.T01:five_prime_UTR	35.0%
	TGAAGTTCTTGAGAAATGGA+AGG	-	Chr6:73654604-73654623	None:intergenic	35.0%
	TGGAAATGTGATTAATGGTG+GGG	-	Chr6:73657349-73657368	None:intergenic	35.0%
	TGGTTCCTACAATTAGAGTT+AGG	+	Chr6:73655382-73655401	MsG0680033793.01.T01:CDS	35.0%
	TTGACCCTAACTCTAATTGT+AGG	-	Chr6:73655390-73655409	None:intergenic	35.0%
!	AAGGCTTTTCTTGATGTAGT+TGG	+	Chr6:73655951-73655970	MsG0680033793.01.T01:CDS	35.0%
!	ATCTATCTCACAGATTAGCT+TGG	+	Chr6:73656076-73656095	MsG0680033793.01.T01:CDS	35.0%
!	CCATTTGAATGCTTTTGTTG+AGG	-	Chr6:73657132-73657151	None:intergenic	35.0%
!	TCTTGATGTAGTTGGTGTAA+AGG	+	Chr6:73655959-73655978	MsG0680033793.01.T01:CDS	35.0%
!	TTTTCTCTCTCTCGTAATTG+TGG	+	Chr6:73654942-73654961	MsG0680033793.01.T01:five_prime_UTR	35.0%
!!	AAGTTGTGATTTGGTGACAT+TGG	+	Chr6:73655830-73655849	MsG0680033793.01.T01:intron	35.0%
!!	AGATTAGCTTGGAAGTAGAT+AGG	+	Chr6:73656087-73656106	MsG0680033793.01.T01:CDS	35.0%
!!	CCTCAACAAAAGCATTCAAA+TGG	+	Chr6:73657129-73657148	MsG0680033793.01.T01:CDS	35.0%
!!	TCTTGATGATGTAAACCAGT+TGG	-	Chr6:73655894-73655913	None:intergenic	35.0%
!!	TGAGCTTTCACTTGTTTTTC+AGG	+	Chr6:73657263-73657282	MsG0680033793.01.T01:CDS	35.0%
	AAAATGTTGTCAGGACCAAC+TGG	+	Chr6:73655876-73655895	MsG0680033793.01.T01:CDS	40.0%
	AATCTTCGCGCTATAAAGCA+CGG	+	Chr6:73655503-73655522	MsG0680033793.01.T01:intron	40.0%
	AATTCCCAACTGAACTTAGG+AGG	-	Chr6:73657420-73657439	None:intergenic	40.0%
	ACTAACGGAATACACGTCAA+AGG	-	Chr6:73656832-73656851	None:intergenic	40.0%
	AGACAAAGAGAGGGATTCTA+AGG	+	Chr6:73655932-73655951	MsG0680033793.01.T01:CDS	40.0%
	AGGGTTACGATTTGAATCAG+TGG	-	Chr6:73655358-73655377	None:intergenic	40.0%
	CGTATGACTCATACAATCTC+AGG	-	Chr6:73656160-73656179	None:intergenic	40.0%
	CTAATTGTAGGAACCAAAGC+AGG	-	Chr6:73655378-73655397	None:intergenic	40.0%
	CTTAGGAGGACCTGAATTAT+TGG	-	Chr6:73657406-73657425	None:intergenic	40.0%
	GCATTCAAATGGGAAACGAT+TGG	+	Chr6:73657140-73657159	MsG0680033793.01.T01:CDS	40.0%
	GTAGTAACAACAACTCCTGA+GGG	-	Chr6:73657303-73657322	None:intergenic	40.0%
	GTTGTGGATGTAGATGTAGA+TGG	-	Chr6:73657369-73657388	None:intergenic	40.0%
	GTTTCTTCACCTATAAGCTC+AGG	+	Chr6:73655262-73655281	MsG0680033793.01.T01:CDS	40.0%
	TATAAAGCACGGACACTCTT+CGG	+	Chr6:73655514-73655533	MsG0680033793.01.T01:intron	40.0%
	TGAAAGAAGATGTGAGGATG+AGG	+	Chr6:73655203-73655222	MsG0680033793.01.T01:exon	40.0%
	TGTAGTAACAACAACTCCTG+AGG	-	Chr6:73657304-73657323	None:intergenic	40.0%
	TTCAAATCGTAACCCTGCTT+TGG	+	Chr6:73655362-73655381	MsG0680033793.01.T01:CDS	40.0%
!	AACATGTTCTAGCAGCCTTT+TGG	+	Chr6:73654997-73655016	MsG0680033793.01.T01:five_prime_UTR	40.0%
!	TAGCAGCCTTTTGGTGAATT+GGG	+	Chr6:73655006-73655025	MsG0680033793.01.T01:five_prime_UTR	40.0%
!!	TGTGATTTGGTGACATTGGT+TGG	+	Chr6:73655834-73655853	MsG0680033793.01.T01:CDS	40.0%
	AGGTCCTCCTAAGTTCAGTT+GGG	+	Chr6:73657413-73657432	MsG0680033793.01.T01:CDS	45.0%
	ATCTCCCATTCCATTGAACC+CGG	-	Chr6:73655304-73655323	None:intergenic	45.0%
	ATGAAGCATGGATACGGACA+CGG	-	Chr6:73655601-73655620	None:intergenic	45.0%
	ATTGTGGACTTGTGGAATGC+TGG	+	Chr6:73654958-73654977	MsG0680033793.01.T01:five_prime_UTR	45.0%
	ATTTGACACGTGTTCGACAC+CGG	-	Chr6:73655552-73655571	None:intergenic	45.0%
	CTCTCGTAATTGTGGACTTG+TGG	+	Chr6:73654950-73654969	MsG0680033793.01.T01:five_prime_UTR	45.0%
	GGTCATTGAAGGAGTAGTTG+TGG	-	Chr6:73657385-73657404	None:intergenic	45.0%
	GTTCAATGGAATGGGAGATG+AGG	+	Chr6:73655305-73655324	MsG0680033793.01.T01:CDS	45.0%
	TAACAACAACTCCTGAGGGT+TGG	-	Chr6:73657299-73657318	None:intergenic	45.0%
	TCTTCACCTATAAGCTCAGG+TGG	+	Chr6:73655265-73655284	MsG0680033793.01.T01:CDS	45.0%
	TGAACCGGGTTCAATGGAAT+GGG	+	Chr6:73655297-73655316	MsG0680033793.01.T01:CDS	45.0%
	TGTTTGAACACCATTCCACC+TGG	-	Chr6:73655331-73655350	None:intergenic	45.0%
	TTGGAAGTAGATAGGCTTGC+CGG	+	Chr6:73656095-73656114	MsG0680033793.01.T01:CDS	45.0%
	TTGTGGACTTGTGGAATGCT+GGG	+	Chr6:73654959-73654978	MsG0680033793.01.T01:five_prime_UTR	45.0%
!	AGCCTTTTGGTGAATTGGGT+CGG	+	Chr6:73655010-73655029	MsG0680033793.01.T01:five_prime_UTR	45.0%
!	CTAGCAGCCTTTTGGTGAAT+TGG	+	Chr6:73655005-73655024	MsG0680033793.01.T01:five_prime_UTR	45.0%
!!	TGACATTGGTTGGTGTTGCA+GGG	+	Chr6:73655844-73655863	MsG0680033793.01.T01:CDS	45.0%
	AAGTAGATAGGCTTGCCGGA+GGG	+	Chr6:73656099-73656118	MsG0680033793.01.T01:CDS	50.0%
	AGACGTAAACACGTACCCTC+CGG	-	Chr6:73656117-73656136	None:intergenic	50.0%
	AGAGAGAGAGAGAGAGAGAG+AGG	-	Chr6:73654899-73654918	None:intergenic	50.0%
	AGAGAGAGAGAGAGAGAGAG+GGG	-	Chr6:73654899-73654918	None:intergenic	50.0%
	ATACACGTCAAAGGACCGCA+TGG	-	Chr6:73656823-73656842	None:intergenic	50.0%
	CACCGACCCAATTCACCAAA+AGG	-	Chr6:73655015-73655034	None:intergenic	50.0%
	CAGGTCCTCCTAAGTTCAGT+TGG	+	Chr6:73657412-73657431	MsG0680033793.01.T01:CDS	50.0%
	CTGAACCGGGTTCAATGGAA+TGG	+	Chr6:73655296-73655315	MsG0680033793.01.T01:CDS	50.0%
	CTGCAACCACCTGAGCTTAT+AGG	-	Chr6:73655274-73655293	None:intergenic	50.0%
	GAACAACAACACCAACCCTC+AGG	+	Chr6:73657285-73657304	MsG0680033793.01.T01:CDS	50.0%
	GAGAGAGAGAGAGAGAGAGA+GGG	-	Chr6:73654898-73654917	None:intergenic	50.0%
	TGTGGACTTGTGGAATGCTG+GGG	+	Chr6:73654960-73654979	MsG0680033793.01.T01:five_prime_UTR	50.0%
!	TCTTCGGATTAGGCGTGTTC+CGG	+	Chr6:73655530-73655549	MsG0680033793.01.T01:intron	50.0%
!!	GACATTGGTTGGTGTTGCAG+GGG	+	Chr6:73655845-73655864	MsG0680033793.01.T01:CDS	50.0%
!!	GTGACATTGGTTGGTGTTGC+AGG	+	Chr6:73655843-73655862	MsG0680033793.01.T01:CDS	50.0%
	AGAGAGAGAGAGAGAGAGGG+GGG	-	Chr6:73655096-73655115	None:intergenic	55.0%
	AGGTGGTTGCAGAGCTGAAC+CGG	+	Chr6:73655282-73655301	MsG0680033793.01.T01:CDS	55.0%
	ATGGAATGGGAGATGAGGCC+AGG	+	Chr6:73655310-73655329	MsG0680033793.01.T01:CDS	55.0%
	CAGAGCTGAACCGGGTTCAA+TGG	+	Chr6:73655291-73655310	MsG0680033793.01.T01:CDS	55.0%
	GAAGTAGATAGGCTTGCCGG+AGG	+	Chr6:73656098-73656117	MsG0680033793.01.T01:CDS	55.0%
	GAGAGAGAGAGAGAGAGAGG+GGG	-	Chr6:73655097-73655116	None:intergenic	55.0%
	GCACGGACACTCTTCGGATT+AGG	+	Chr6:73655520-73655539	MsG0680033793.01.T01:intron	55.0%
	TTGTGGAATGCTGGGGTCAG+AGG	+	Chr6:73654967-73654986	MsG0680033793.01.T01:five_prime_UTR	55.0%
	AGAGAGAGAGAGAGAGGGGG+GGG	-	Chr6:73655094-73655113	None:intergenic	60.0%
	GAATGGGAGATGAGGCCAGG+TGG	+	Chr6:73655313-73655332	MsG0680033793.01.T01:CDS	60.0%
	GAGAGAGAGAGAGAGAGGGG+GGG	-	Chr6:73655095-73655114	None:intergenic	60.0%
	GGAGATGAGGCCAGGTGGAA+TGG	+	Chr6:73655318-73655337	MsG0680033793.01.T01:CDS	60.0%
	GGTGGTTGCAGAGCTGAACC+GGG	+	Chr6:73655283-73655302	MsG0680033793.01.T01:CDS	60.0%
	AGAGAGAGAGAGAGGGGGGG+GGG	-	Chr6:73655092-73655111	None:intergenic	65.0%
	GAGAGAGAGAGAGAGGGGGG+GGG	-	Chr6:73655093-73655112	None:intergenic	65.0%
	GGGGGGGGGTTAGATCTCTG+AGG	-	Chr6:73655069-73655088	None:intergenic	65.0%
	AGAGAGAGAGAGGGGGGGGG+GGG	-	Chr6:73655090-73655109	None:intergenic	70.0%
	GAGAGAGAGAGAGGGGGGGG+GGG	-	Chr6:73655091-73655110	None:intergenic	70.0%
	AGAGAGAGAGGGGGGGGGGG+GGG	-	Chr6:73655088-73655107	None:intergenic	75.0%
	GAGAGAGAGAGGGGGGGGGG+GGG	-	Chr6:73655089-73655108	None:intergenic	75.0%
!	AGAGAGAGGGGGGGGGGGGG+GGG	-	Chr6:73655086-73655105	None:intergenic	80.0%
!	GAGAGAGAGGGGGGGGGGGG+GGG	-	Chr6:73655087-73655106	None:intergenic	80.0%
!	AGAGAGGGGGGGGGGGGGGG+GGG	-	Chr6:73655084-73655103	None:intergenic	85.0%
!	GAGAGAGGGGGGGGGGGGGG+GGG	-	Chr6:73655085-73655104	None:intergenic	85.0%
!	GAGAGGGGGGGGGGGGGGGG+GGG	-	Chr6:73655083-73655102	None:intergenic	90.0%

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	73654537	73657449	73654537	ID=MsG0680033793.01;Name=MsG0680033793.01
Chr6	mRNA	73654537	73657449	73654537	ID=MsG0680033793.01.T01;Parent=MsG0680033793.01;Name=MsG0680033793.01.T01;_AED=0.49;_eAED=0.49;_QI=683\|0\|0.33\|1\|1\|1\|3\|0\|311
Chr6	exon	73657041	73657449	73657041	ID=MsG0680033793.01.T01:exon:3695;Parent=MsG0680033793.01.T01
Chr6	exon	73655833	73656120	73655833	ID=MsG0680033793.01.T01:exon:3694;Parent=MsG0680033793.01.T01
Chr6	exon	73654537	73655458	73654537	ID=MsG0680033793.01.T01:exon:3693;Parent=MsG0680033793.01.T01
Chr6	five_prime_UTR	73654537	73655219	73654537	ID=MsG0680033793.01.T01:five_prime_utr;Parent=MsG0680033793.01.T01
Chr6	CDS	73655220	73655458	73655220	ID=MsG0680033793.01.T01:cds;Parent=MsG0680033793.01.T01
Chr6	CDS	73655833	73656120	73655833	ID=MsG0680033793.01.T01:cds;Parent=MsG0680033793.01.T01
Chr6	CDS	73657041	73657449	73657041	ID=MsG0680033793.01.T01:cds;Parent=MsG0680033793.01.T01

Gene Sequence

>MsG0680033793.01.T01

ATGAGGAATAATCATAATCATGGTAATAATAAGACAAATGGTGTTTCTTCACCTATAAGCTCAGGTGGTTGCAGAGCTGAACCGGGTTCAATGGAATGGGAGATGAGGCCAGGTGGAATGGTGTTCAAACAAGAACCACTGATTCAAATCGTAACCCTGCTTTGGTTCCTACAATTAGAGTTAGGGTCAAGTTTGGTTCAATTTATCATGAAGTCAATATTAGTTCACAAGCCACATTGTTGTGATTTGGTGACATTGGTTGGTGTTGCAGGGGATTTGAAGAAAATGTTGTCAGGACCAACTGGTTTACATCATCAAGATCAAAAGTTGTTTTACAAAGACAAAGAGAGGGATTCTAAGGCTTTTCTTGATGTAGTTGGTGTAAAGGACAAATCTAAACTAGTTCTTGTGGAAGATCCTATTAGTCAAGAGAAAAGGATTTTGGAATTGAGGAAGAATGCTAAGATGGAGAAAGCTGCAAAATCTATCTCACAGATTAGCTTGGAAGTAGATAGGCTTGCCGGAGGGAGAGTTCAAAAGTATGTTGAAACATTGGATATGCTAAAAGCTAAGAATTCTATACAAAATGGCAATGATGTTCATGCTCAAGTGCAACCTCAACAAAAGCATTCAAATGGGAAACGATTGGAAACAATTCAAGAGCAACCAAAAATTCATTCAAATGGTTATCATGGGTCAATAGTACCAATTCAAGAACAACAAGAAGAACAACCTAGAAAAAACTCAAATGAGCTTTCACTTGTTTTTCAGGAACAACAACACCAACCCTCAGGAGTTGTTGTTACTACAAAATGGGAGACATTTGATTCTACCCCACCATTAATCACATTTCCATCTACATCTACATCCACAACTACTCCTTCAATGACCAATAATTCAGGTCCTCCTAAGTTCAGTTGGGAATTCTTTGAGTGA

Protein sequence

>MsG0680033793.01.T01

MRNNHNHGNNKTNGVSSPISSGGCRAEPGSMEWEMRPGGMVFKQEPLIQIVTLLWFLQLELGSSLVQFIMKSILVHKPHCCDLVTLVGVAGDLKKMLSGPTGLHHQDQKLFYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRILELRKNAKMEKAAKSISQISLEVDRLAGGRVQKYVETLDMLKAKNSIQNGNDVHAQVQPQQKHSNGKRLETIQEQPKIHSNGYHGSIVPIQEQQEEQPRKNSNELSLVFQEQQHQPSGVVVTTKWETFDSTPPLITFPSTSTSTTTPSMTNNSGPPKFSWEFFE*