Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034254.01.T02 | GAU17025.1 | 84.058 | 69 | 11 | 0 | 1 | 69 | 118 | 186 | 2.69E-34 | 125 |
| MsG0680034254.01.T01 | GAU17025.1 | 71.689 | 219 | 28 | 3 | 1 | 218 | 1 | 186 | 2.33E-94 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034254.01.T01 | Q41015 | 46.512 | 215 | 95 | 10 | 1 | 207 | 1 | 203 | 3.03E-41 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034254.01.T01 | A0A2Z6LIM5 | 71.689 | 219 | 28 | 3 | 1 | 218 | 1 | 186 | 1.11e-94 | 283 |
| MsG0680034254.01.T02 | A0A2Z6LIM5 | 84.058 | 69 | 11 | 0 | 1 | 69 | 118 | 186 | 1.29e-34 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048134.01 | MsG0680034254.01 | 0.830697 | 2.538278e-55 | 2.694791e-52 |
| MsG0180000029.01 | MsG0680034254.01 | 0.818234 | 2.180343e-52 | 1.622784e-49 |
| MsG0180003320.01 | MsG0680034254.01 | 0.844133 | 9.127450e-59 | 1.459597e-55 |
| MsG0180004549.01 | MsG0680034254.01 | 0.801588 | 8.387540e-49 | 4.020646e-46 |
| MsG0180005059.01 | MsG0680034254.01 | 0.800839 | 1.194047e-48 | 5.616735e-46 |
| MsG0180005080.01 | MsG0680034254.01 | 0.803313 | 3.700285e-49 | 1.853446e-46 |
| MsG0180006195.01 | MsG0680034254.01 | 0.812104 | 5.014348e-51 | 3.159552e-48 |
| MsG0680031200.01 | MsG0680034254.01 | 0.811179 | 7.967701e-51 | 4.898455e-48 |
| MsG0680032932.01 | MsG0680034254.01 | 0.838819 | 2.292024e-57 | 3.105820e-54 |
| MsG0680033368.01 | MsG0680034254.01 | 0.811491 | 6.816933e-51 | 4.225777e-48 |
| MsG0680034238.01 | MsG0680034254.01 | 0.840120 | 1.053048e-57 | 1.485362e-54 |
| MsG0680034253.01 | MsG0680034254.01 | 0.833854 | 4.198377e-56 | 4.896143e-53 |
| MsG0680034254.01 | MsG0680034354.01 | 0.837686 | 4.490009e-57 | 5.877849e-54 |
| MsG0680034254.01 | MsG0680034356.01 | 0.820318 | 7.306827e-53 | 5.762253e-50 |
| MsG0680034254.01 | MsG0680034418.01 | 0.819109 | 1.380213e-52 | 1.052471e-49 |
| MsG0680034254.01 | MsG0680034974.01 | 0.809800 | 1.581549e-50 | 9.375770e-48 |
| MsG0680034254.01 | MsG0780036839.01 | 0.828938 | 6.805371e-55 | 6.862959e-52 |
| MsG0680034254.01 | MsG0780038519.01 | 0.810539 | 1.096126e-50 | 6.624935e-48 |
| MsG0680034254.01 | MsG0780038657.01 | 0.810721 | 1.001283e-50 | 6.081518e-48 |
| MsG0680034254.01 | MsG0780040497.01 | 0.807692 | 4.463746e-50 | 2.502649e-47 |
| MsG0680034254.01 | MsG0780040560.01 | 0.801710 | 7.918036e-49 | 3.807392e-46 |
| MsG0680034254.01 | MsG0780041036.01 | 0.810405 | 1.171651e-50 | 7.056092e-48 |
| MsG0680034254.01 | MsG0780041248.01 | 0.819886 | 9.176223e-53 | 7.150289e-50 |
| MsG0680034254.01 | MsG0880042642.01 | 0.803673 | 3.115638e-49 | 1.575113e-46 |
| MsG0680034254.01 | MsG0880045801.01 | 0.826336 | 2.868643e-54 | 2.682543e-51 |
| MsG0680034254.01 | MsG0880045854.01 | 0.819928 | 8.978288e-53 | 7.004300e-50 |
| MsG0680034254.01 | MsG0880046946.01 | 0.823743 | 1.175371e-53 | 1.020917e-50 |
| MsG0680034254.01 | MsG0880047383.01 | 0.800573 | 1.352557e-48 | 6.319537e-46 |
| MsG0480019024.01 | MsG0680034254.01 | 0.857710 | 1.355619e-62 | 3.376521e-59 |
| MsG0480019146.01 | MsG0680034254.01 | 0.816213 | 6.208738e-52 | 4.372623e-49 |
| MsG0480020118.01 | MsG0680034254.01 | 0.807954 | 3.927442e-50 | 2.217119e-47 |
| MsG0480020904.01 | MsG0680034254.01 | 0.861443 | 1.022594e-63 | 2.894300e-60 |
| MsG0480021129.01 | MsG0680034254.01 | 0.801617 | 8.275257e-49 | 3.969691e-46 |
| MsG0580024087.01 | MsG0680034254.01 | 0.820815 | 5.618112e-53 | 4.492208e-50 |
| MsG0380016299.01 | MsG0680034254.01 | 0.810788 | 9.685710e-51 | 5.893283e-48 |
| MsG0380016490.01 | MsG0680034254.01 | 0.812198 | 4.783818e-51 | 3.022096e-48 |
| MsG0380017168.01 | MsG0680034254.01 | 0.813306 | 2.736388e-51 | 1.780555e-48 |
| MsG0380017901.01 | MsG0680034254.01 | 0.848341 | 6.521098e-60 | 1.192958e-56 |
| MsG0480018433.01 | MsG0680034254.01 | 0.823959 | 1.045617e-53 | 9.137154e-51 |
| MsG0480018438.01 | MsG0680034254.01 | 0.822271 | 2.589340e-53 | 2.157043e-50 |
| MsG0580026521.01 | MsG0680034254.01 | 0.825598 | 4.295663e-54 | 3.933422e-51 |
| MsG0580029937.01 | MsG0680034254.01 | 0.811891 | 5.580846e-51 | 3.496041e-48 |
| MsG0280009232.01 | MsG0680034254.01 | 0.826463 | 2.675193e-54 | 2.510636e-51 |
| MsG0280009253.01 | MsG0680034254.01 | 0.808204 | 3.474392e-50 | 1.974488e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034254.01.T02 | MTR_6g065460 | 56.897 | 58 | 23 | 2 | 1 | 58 | 147 | 202 | 8.04e-17 | 70.9 |
| MsG0680034254.01.T02 | MTR_6g059650 | 52.174 | 69 | 31 | 2 | 1 | 69 | 145 | 211 | 2.53e-15 | 67.0 |
| MsG0680034254.01.T02 | MTR_6g059530 | 52.778 | 72 | 28 | 4 | 1 | 69 | 135 | 203 | 7.29e-14 | 63.2 |
| MsG0680034254.01.T02 | MTR_6g059410 | 51.389 | 72 | 29 | 4 | 1 | 69 | 134 | 202 | 1.45e-13 | 62.4 |
| MsG0680034254.01.T01 | MTR_6g059650 | 50.909 | 220 | 97 | 8 | 1 | 218 | 1 | 211 | 2.34e-51 | 165 |
| MsG0680034254.01.T01 | MTR_6g065460 | 47.642 | 212 | 96 | 9 | 1 | 207 | 1 | 202 | 7.69e-49 | 159 |
| MsG0680034254.01.T01 | MTR_6g059760 | 43.805 | 226 | 106 | 10 | 1 | 218 | 1 | 213 | 2.35e-46 | 152 |
| MsG0680034254.01.T01 | MTR_6g059530 | 47.706 | 218 | 94 | 9 | 4 | 218 | 3 | 203 | 1.89e-45 | 150 |
| MsG0680034254.01.T01 | MTR_6g044780 | 39.726 | 219 | 117 | 6 | 1 | 213 | 1 | 210 | 2.28e-43 | 145 |
| MsG0680034254.01.T01 | MTR_6g045097 | 39.189 | 222 | 119 | 7 | 1 | 215 | 1 | 213 | 5.61e-42 | 142 |
| MsG0680034254.01.T01 | MTR_6g059410 | 45.413 | 218 | 98 | 11 | 4 | 218 | 3 | 202 | 3.63e-40 | 136 |
| MsG0680034254.01.T01 | MTR_6g044810 | 38.636 | 220 | 118 | 7 | 1 | 213 | 1 | 210 | 9.20e-40 | 136 |
| MsG0680034254.01.T01 | MTR_6g045403 | 40.566 | 212 | 111 | 7 | 1 | 207 | 1 | 202 | 1.00e-39 | 136 |
| MsG0680034254.01.T01 | MTR_6g045433 | 36.681 | 229 | 115 | 8 | 1 | 213 | 1 | 215 | 2.15e-38 | 132 |
| MsG0680034254.01.T01 | MTR_6g065460 | 40.566 | 212 | 87 | 8 | 1 | 207 | 1 | 178 | 8.44e-35 | 122 |
| MsG0680034254.01.T01 | MTR_6g059730 | 40.845 | 213 | 109 | 9 | 1 | 207 | 1 | 202 | 3.45e-31 | 114 |
| MsG0680034254.01.T01 | MTR_6g059680 | 42.857 | 217 | 103 | 9 | 1 | 207 | 1 | 206 | 9.14e-31 | 113 |
| MsG0680034254.01.T01 | MTR_6g017225 | 40.639 | 219 | 105 | 12 | 1 | 207 | 1 | 206 | 2.20e-29 | 112 |
| MsG0680034254.01.T01 | MTR_3g463590 | 37.500 | 200 | 112 | 8 | 22 | 218 | 23 | 212 | 4.56e-29 | 108 |
| MsG0680034254.01.T01 | MTR_1g057110 | 35.484 | 217 | 97 | 9 | 1 | 207 | 1 | 184 | 1.79e-28 | 106 |
| MsG0680034254.01.T01 | MTR_6g009650 | 36.957 | 230 | 112 | 11 | 1 | 217 | 1 | 210 | 4.70e-27 | 103 |
| MsG0680034254.01.T01 | MTR_6g066210 | 37.156 | 218 | 110 | 10 | 1 | 207 | 1 | 202 | 5.82e-26 | 100 |
| MsG0680034254.01.T01 | MTR_6g066190 | 37.004 | 227 | 115 | 12 | 1 | 216 | 1 | 210 | 5.60e-24 | 95.1 |
| MsG0680034254.01.T01 | MTR_6g009563 | 35.909 | 220 | 121 | 10 | 1 | 213 | 1 | 207 | 1.23e-22 | 91.7 |
| MsG0680034254.01.T01 | MTR_6g059810 | 35.185 | 216 | 117 | 9 | 5 | 208 | 6 | 210 | 6.86e-22 | 89.7 |
| MsG0680034254.01.T01 | MTR_1g035770 | 33.495 | 206 | 117 | 9 | 1 | 195 | 1 | 197 | 1.02e-19 | 84.3 |
| MsG0680034254.01.T01 | MTR_6g059755 | 41.379 | 116 | 58 | 7 | 108 | 218 | 20 | 130 | 1.23e-15 | 71.2 |
| MsG0680034254.01.T01 | MTR_6g078070 | 27.451 | 204 | 141 | 5 | 4 | 206 | 3 | 200 | 9.38e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034254.01.T01 | AT1G17860 | 29.126 | 206 | 128 | 5 | 4 | 206 | 2 | 192 | 1.68e-16 | 75.1 |
| MsG0680034254.01.T01 | AT1G73325 | 30.097 | 206 | 128 | 7 | 5 | 206 | 7 | 200 | 5.13e-12 | 63.2 |
Find 50 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATGTCAAATACTTTATT+TGG | 0.154388 | 6:+84512442 | MsG0680034254.01.T01:CDS |
| TCTACTATGCTAAATTTAAT+TGG | 0.190622 | 6:-84512582 | None:intergenic |
| CCACCAGTTGAAAAGGAATT+TGG | 0.236793 | 6:-84512465 | None:intergenic |
| GCAATGAATACAACATTAAA+TGG | 0.249376 | 6:-84512930 | None:intergenic |
| TTTAAGGATTTAGCACATTC+TGG | 0.263488 | 6:-84512669 | None:intergenic |
| ACTTGTTCTGTAAAGGCTAA+TGG | 0.267193 | 6:-84512390 | None:intergenic |
| CCATTTGACTGACCGCATTA+TGG | 0.295536 | 6:+84512758 | MsG0680034254.01.T01:CDS |
| TACTGGTAAGTGTGTAGATA+TGG | 0.306563 | 6:-84512625 | None:intergenic |
| GGTAAGTGATGTTGGCTTCA+TGG | 0.314283 | 6:-84512328 | None:intergenic |
| ATATCAAACTCAATAAATAC+TGG | 0.403900 | 6:-84512642 | None:intergenic |
| GTCCTTTACTTGTTCTGTAA+AGG | 0.421728 | 6:-84512397 | None:intergenic |
| TGACACAAGGGAGCCGTGGC+AGG | 0.463691 | 6:+84512503 | MsG0680034254.01.T01:CDS |
| AAATCTTGAAGTACAGTAGT+TGG | 0.464871 | 6:-84512537 | None:intergenic |
| CAGTCCACCACCAGTTGAAA+AGG | 0.465235 | 6:-84512472 | None:intergenic |
| ATTGCTGATAACTCTGGATC+TGG | 0.469718 | 6:+84512948 | MsG0680034254.01.T01:CDS |
| GTATTCATTGCTGATAACTC+TGG | 0.472443 | 6:+84512942 | MsG0680034254.01.T01:CDS |
| GAACAAGTAAAGGACACAAA+TGG | 0.481025 | 6:+84512405 | MsG0680034254.01.T01:CDS |
| CCATAATGCGGTCAGTCAAA+TGG | 0.486325 | 6:-84512758 | None:intergenic |
| AATGTGCTAAATCCTTAAAG+TGG | 0.492977 | 6:+84512673 | MsG0680034254.01.T01:CDS |
| CCGATAGCCACCCATGGTAG+AGG | 0.513253 | 6:-84512720 | None:intergenic |
| CCTCTACCATGGGTGGCTAT+CGG | 0.514699 | 6:+84512720 | MsG0680034254.01.T01:CDS |
| AGGCAAAGAGGAGCAAAGAA+AGG | 0.526841 | 6:-84512353 | None:intergenic |
| ACTGGTAAGTGTGTAGATAT+GGG | 0.531982 | 6:-84512624 | None:intergenic |
| GGAAGACATCGTGATGAGAA+AGG | 0.532879 | 6:+84512876 | MsG0680034254.01.T01:CDS |
| AGCCTTTACAGAACAAGTAA+AGG | 0.533453 | 6:+84512395 | MsG0680034254.01.T01:CDS |
| TTTCAACTGGTGGTGGACTG+AGG | 0.533947 | 6:+84512475 | MsG0680034254.01.T01:CDS |
| GGTGGCTATCGGTGATTTCG+CGG | 0.534492 | 6:+84512731 | MsG0680034254.01.T01:CDS |
| GAAAGGGTGGTAAGTGATGT+TGG | 0.534750 | 6:-84512336 | None:intergenic |
| CCGACATCAAAACAAGTATC+CGG | 0.539284 | 6:-84512855 | None:intergenic |
| TAAATTTAATTGGCAAGCCA+TGG | 0.548633 | 6:-84512572 | None:intergenic |
| AACATTCAGAAACATGGTAC+AGG | 0.549070 | 6:+84512792 | MsG0680034254.01.T01:CDS |
| TAATGGAAAGTTTGTGGTGA+AGG | 0.552923 | 6:-84512373 | None:intergenic |
| GGACATTCGTCGGCCTGCCA+CGG | 0.554761 | 6:-84512516 | None:intergenic |
| AAAGGCTAATGGAAAGTTTG+TGG | 0.562122 | 6:-84512379 | None:intergenic |
| TTCTTTAACATTCAGAAACA+TGG | 0.562425 | 6:+84512786 | MsG0680034254.01.T01:CDS |
| GCTATCGGTGATTTCGCGGA+TGG | 0.562456 | 6:+84512735 | MsG0680034254.01.T01:CDS |
| GGCAAAGAGGAGCAAAGAAA+GGG | 0.563130 | 6:-84512352 | None:intergenic |
| TTGACTGACCGCATTATGGA+AGG | 0.565070 | 6:+84512762 | MsG0680034254.01.T01:CDS |
| ACTGGTGGTGGACTGAGGAT+TGG | 0.581829 | 6:+84512480 | MsG0680034254.01.T01:CDS |
| CGATAGCCACCCATGGTAGA+GGG | 0.583970 | 6:-84512719 | None:intergenic |
| GACTGAGGATTGGTGACACA+AGG | 0.587342 | 6:+84512490 | MsG0680034254.01.T01:CDS |
| TACAGTAGTTGGACATTCGT+CGG | 0.602808 | 6:-84512526 | None:intergenic |
| ATGTGCTAAATCCTTAAAGT+GGG | 0.605173 | 6:+84512674 | MsG0680034254.01.T01:CDS |
| TTGGTGACACAAGGGAGCCG+TGG | 0.623671 | 6:+84512499 | MsG0680034254.01.T01:CDS |
| AAAGAGGAGCAAAGAAAGGG+TGG | 0.645158 | 6:-84512349 | None:intergenic |
| TAAAGAAACCTTCCATAATG+CGG | 0.661954 | 6:-84512770 | None:intergenic |
| AGTTTGTGGTGAAGGCAAAG+AGG | 0.668922 | 6:-84512365 | None:intergenic |
| ACATCAAAACAAGTATCCGG+TGG | 0.675645 | 6:-84512852 | None:intergenic |
| AAATCACCGATAGCCACCCA+TGG | 0.684221 | 6:-84512726 | None:intergenic |
| ACTGAGGATTGGTGACACAA+GGG | 0.706089 | 6:+84512491 | MsG0680034254.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCAAACTCAATAAATAC+TGG | - | Chr6:84512645-84512664 | None:intergenic | 20.0% |
| !! | ATTTGACATTAGCAAAAATA+GGG | - | Chr6:84512434-84512453 | None:intergenic | 20.0% |
| !! | CTAATGTCAAATACTTTATT+TGG | + | Chr6:84512442-84512461 | MsG0680034254.01.T01:CDS | 20.0% |
| !! | TATTTGACATTAGCAAAAAT+AGG | - | Chr6:84512435-84512454 | None:intergenic | 20.0% |
| !! | TCTACTATGCTAAATTTAAT+TGG | - | Chr6:84512585-84512604 | None:intergenic | 20.0% |
| ! | GCAATGAATACAACATTAAA+TGG | - | Chr6:84512933-84512952 | None:intergenic | 25.0% |
| ! | TTCTTTAACATTCAGAAACA+TGG | + | Chr6:84512786-84512805 | MsG0680034254.01.T01:CDS | 25.0% |
| ! | TTGAAAAAATTCCCACTTTA+AGG | - | Chr6:84512688-84512707 | None:intergenic | 25.0% |
| AAATCTTGAAGTACAGTAGT+TGG | - | Chr6:84512540-84512559 | None:intergenic | 30.0% | |
| AATGTGCTAAATCCTTAAAG+TGG | + | Chr6:84512673-84512692 | MsG0680034254.01.T01:CDS | 30.0% | |
| ATGTGCTAAATCCTTAAAGT+GGG | + | Chr6:84512674-84512693 | MsG0680034254.01.T01:CDS | 30.0% | |
| TAAAGAAACCTTCCATAATG+CGG | - | Chr6:84512773-84512792 | None:intergenic | 30.0% | |
| TAAATTTAATTGGCAAGCCA+TGG | - | Chr6:84512575-84512594 | None:intergenic | 30.0% | |
| TTTAAGGATTTAGCACATTC+TGG | - | Chr6:84512672-84512691 | None:intergenic | 30.0% | |
| ! | GATTTTTCTCAAAATGACCA+TGG | + | Chr6:84512555-84512574 | MsG0680034254.01.T01:CDS | 30.0% |
| AAAGGCTAATGGAAAGTTTG+TGG | - | Chr6:84512382-84512401 | None:intergenic | 35.0% | |
| AACATTCAGAAACATGGTAC+AGG | + | Chr6:84512792-84512811 | MsG0680034254.01.T01:CDS | 35.0% | |
| ACTGGTAAGTGTGTAGATAT+GGG | - | Chr6:84512627-84512646 | None:intergenic | 35.0% | |
| ACTTGTTCTGTAAAGGCTAA+TGG | - | Chr6:84512393-84512412 | None:intergenic | 35.0% | |
| AGCCTTTACAGAACAAGTAA+AGG | + | Chr6:84512395-84512414 | MsG0680034254.01.T01:CDS | 35.0% | |
| GAACAAGTAAAGGACACAAA+TGG | + | Chr6:84512405-84512424 | MsG0680034254.01.T01:CDS | 35.0% | |
| GTATTCATTGCTGATAACTC+TGG | + | Chr6:84512942-84512961 | MsG0680034254.01.T01:CDS | 35.0% | |
| GTCCTTTACTTGTTCTGTAA+AGG | - | Chr6:84512400-84512419 | None:intergenic | 35.0% | |
| TAATGGAAAGTTTGTGGTGA+AGG | - | Chr6:84512376-84512395 | None:intergenic | 35.0% | |
| TACTGGTAAGTGTGTAGATA+TGG | - | Chr6:84512628-84512647 | None:intergenic | 35.0% | |
| !!! | AAGATTTTTTCCCTCTACCA+TGG | + | Chr6:84512709-84512728 | MsG0680034254.01.T01:CDS | 35.0% |
| !!! | AGATTTTTTCCCTCTACCAT+GGG | + | Chr6:84512710-84512729 | MsG0680034254.01.T01:CDS | 35.0% |
| ACATCAAAACAAGTATCCGG+TGG | - | Chr6:84512855-84512874 | None:intergenic | 40.0% | |
| ATTGCTGATAACTCTGGATC+TGG | + | Chr6:84512948-84512967 | MsG0680034254.01.T01:CDS | 40.0% | |
| CCACCAGTTGAAAAGGAATT+TGG | - | Chr6:84512468-84512487 | None:intergenic | 40.0% | |
| CCGACATCAAAACAAGTATC+CGG | - | Chr6:84512858-84512877 | None:intergenic | 40.0% | |
| TACAGTAGTTGGACATTCGT+CGG | - | Chr6:84512529-84512548 | None:intergenic | 40.0% | |
| ! | AATTCCTTTTCAACTGGTGG+TGG | + | Chr6:84512468-84512487 | MsG0680034254.01.T01:CDS | 40.0% |
| ! | CCAAATTCCTTTTCAACTGG+TGG | + | Chr6:84512465-84512484 | MsG0680034254.01.T01:CDS | 40.0% |
| ! | TGGCCAAATTCCTTTTCAAC+TGG | + | Chr6:84512462-84512481 | MsG0680034254.01.T01:CDS | 40.0% |
| !!! | CCGGATACTTGTTTTGATGT+CGG | + | Chr6:84512855-84512874 | MsG0680034254.01.T01:CDS | 40.0% |
| AAAGAGGAGCAAAGAAAGGG+TGG | - | Chr6:84512352-84512371 | None:intergenic | 45.0% | |
| AGGCAAAGAGGAGCAAAGAA+AGG | - | Chr6:84512356-84512375 | None:intergenic | 45.0% | |
| AGTTTGTGGTGAAGGCAAAG+AGG | - | Chr6:84512368-84512387 | None:intergenic | 45.0% | |
| CCATAATGCGGTCAGTCAAA+TGG | - | Chr6:84512761-84512780 | None:intergenic | 45.0% | |
| CCATTTGACTGACCGCATTA+TGG | + | Chr6:84512758-84512777 | MsG0680034254.01.T01:CDS | 45.0% | |
| GAAAGGGTGGTAAGTGATGT+TGG | - | Chr6:84512339-84512358 | None:intergenic | 45.0% | |
| GGAAGACATCGTGATGAGAA+AGG | + | Chr6:84512876-84512895 | MsG0680034254.01.T01:CDS | 45.0% | |
| GGCAAAGAGGAGCAAAGAAA+GGG | - | Chr6:84512355-84512374 | None:intergenic | 45.0% | |
| TTGACTGACCGCATTATGGA+AGG | + | Chr6:84512762-84512781 | MsG0680034254.01.T01:CDS | 45.0% | |
| ! | ACTGAGGATTGGTGACACAA+GGG | + | Chr6:84512491-84512510 | MsG0680034254.01.T01:CDS | 45.0% |
| !!! | AACAGACGCTTTTTCTCCAC+CGG | + | Chr6:84512836-84512855 | MsG0680034254.01.T01:CDS | 45.0% |
| !!! | TTTTTTCCCTCTACCATGGG+TGG | + | Chr6:84512713-84512732 | MsG0680034254.01.T01:CDS | 45.0% |
| AAATCACCGATAGCCACCCA+TGG | - | Chr6:84512729-84512748 | None:intergenic | 50.0% | |
| CAGTCCACCACCAGTTGAAA+AGG | - | Chr6:84512475-84512494 | None:intergenic | 50.0% | |
| ! | GACTGAGGATTGGTGACACA+AGG | + | Chr6:84512490-84512509 | MsG0680034254.01.T01:CDS | 50.0% |
| !! | TTTCAACTGGTGGTGGACTG+AGG | + | Chr6:84512475-84512494 | MsG0680034254.01.T01:CDS | 50.0% |
| CCTCTACCATGGGTGGCTAT+CGG | + | Chr6:84512720-84512739 | MsG0680034254.01.T01:CDS | 55.0% | |
| CGATAGCCACCCATGGTAGA+GGG | - | Chr6:84512722-84512741 | None:intergenic | 55.0% | |
| GCTATCGGTGATTTCGCGGA+TGG | + | Chr6:84512735-84512754 | MsG0680034254.01.T01:CDS | 55.0% | |
| GGTGGCTATCGGTGATTTCG+CGG | + | Chr6:84512731-84512750 | MsG0680034254.01.T01:CDS | 55.0% | |
| !! | ACTGGTGGTGGACTGAGGAT+TGG | + | Chr6:84512480-84512499 | MsG0680034254.01.T01:CDS | 55.0% |
| CCGATAGCCACCCATGGTAG+AGG | - | Chr6:84512723-84512742 | None:intergenic | 60.0% | |
| ! | TTGGTGACACAAGGGAGCCG+TGG | + | Chr6:84512499-84512518 | MsG0680034254.01.T01:CDS | 60.0% |
| GGACATTCGTCGGCCTGCCA+CGG | - | Chr6:84512519-84512538 | None:intergenic | 65.0% | |
| TGACACAAGGGAGCCGTGGC+AGG | + | Chr6:84512503-84512522 | MsG0680034254.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 84512330 | 84512986 | 84512330 | ID=MsG0680034254.01;Name=MsG0680034254.01 |
| Chr6 | mRNA | 84512330 | 84512986 | 84512330 | ID=MsG0680034254.01.T01;Parent=MsG0680034254.01;Name=MsG0680034254.01.T01;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|218 |
| Chr6 | exon | 84512330 | 84512986 | 84512330 | ID=MsG0680034254.01.T01:exon:19275;Parent=MsG0680034254.01.T01 |
| Chr6 | CDS | 84512330 | 84512986 | 84512330 | ID=MsG0680034254.01.T01:cds;Parent=MsG0680034254.01.T01 |
| Chr6 | mRNA | 84512777 | 84512986 | 84512777 | ID=MsG0680034254.01.T02;Parent=MsG0680034254.01;Name=MsG0680034254.01.T02;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|0|1|0|69 |
| Chr6 | exon | 84512777 | 84512986 | 84512777 | ID=MsG0680034254.01.T02:exon:19276;Parent=MsG0680034254.01.T02 |
| Chr6 | CDS | 84512777 | 84512986 | 84512777 | ID=MsG0680034254.01.T02:cds;Parent=MsG0680034254.01.T02 |
| Gene Sequence |
| Protein sequence |
