Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036766.01.T01 | XP_013447731.1 | 93.421 | 380 | 17 | 4 | 1 | 378 | 1 | 374 | 0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036766.01.T01 | Q9FYG7 | 37.546 | 269 | 129 | 12 | 73 | 312 | 47 | 305 | 6.95E-33 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036766.01.T01 | A0A072TXB5 | 93.421 | 380 | 17 | 4 | 1 | 378 | 1 | 374 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0780036766.01.T01 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000404.01 | MsG0780036766.01 | 0.809758 | 1.615539e-50 | 9.566650e-48 |
| MsG0180001892.01 | MsG0780036766.01 | 0.815418 | 9.340808e-52 | 6.436366e-49 |
| MsG0180003741.01 | MsG0780036766.01 | 0.804379 | 2.222097e-49 | 1.144005e-46 |
| MsG0180003951.01 | MsG0780036766.01 | 0.815945 | 7.126462e-52 | 4.981917e-49 |
| MsG0180004765.01 | MsG0780036766.01 | 0.824878 | 6.358918e-54 | 5.704749e-51 |
| MsG0180005113.01 | MsG0780036766.01 | 0.831054 | 2.074701e-55 | 2.225906e-52 |
| MsG0180005153.01 | MsG0780036766.01 | 0.862304 | 5.570018e-64 | 1.623514e-60 |
| MsG0280010841.01 | MsG0780036766.01 | 0.802033 | 6.795587e-49 | 3.294628e-46 |
| MsG0280011319.01 | MsG0780036766.01 | 0.800638 | 1.312224e-48 | 6.141125e-46 |
| MsG0380012103.01 | MsG0780036766.01 | 0.802479 | 5.501463e-49 | 2.697677e-46 |
| MsG0380014221.01 | MsG0780036766.01 | 0.830795 | 2.401317e-55 | 2.556724e-52 |
| MsG0380014498.01 | MsG0780036766.01 | 0.808203 | 3.475372e-50 | 1.975009e-47 |
| MsG0680031263.01 | MsG0780036766.01 | 0.810804 | 9.604875e-51 | 5.846584e-48 |
| MsG0680031264.01 | MsG0780036766.01 | 0.807907 | 4.019143e-50 | 2.265960e-47 |
| MsG0680031431.01 | MsG0780036766.01 | 0.801195 | 1.009706e-48 | 4.792523e-46 |
| MsG0680031621.01 | MsG0780036766.01 | 0.801132 | 1.040229e-48 | 4.929736e-46 |
| MsG0680035498.01 | MsG0780036766.01 | 0.817830 | 2.690488e-52 | 1.980563e-49 |
| MsG0680035580.01 | MsG0780036766.01 | 0.815939 | 7.149208e-52 | 4.996985e-49 |
| MsG0480021056.01 | MsG0780036766.01 | 0.823582 | 1.282038e-53 | 1.108380e-50 |
| MsG0480022788.01 | MsG0780036766.01 | 0.807156 | 5.799506e-50 | 3.206638e-47 |
| MsG0480023601.01 | MsG0780036766.01 | 0.819804 | 9.582657e-53 | 7.450185e-50 |
| MsG0280007955.01 | MsG0780036766.01 | 0.817810 | 2.717922e-52 | 1.999706e-49 |
| MsG0280008390.01 | MsG0780036766.01 | 0.835909 | 1.274787e-56 | 1.581056e-53 |
| MsG0280008391.01 | MsG0780036766.01 | 0.807877 | 4.077062e-50 | 2.296903e-47 |
| MsG0280008392.01 | MsG0780036766.01 | 0.835884 | 1.294010e-56 | 1.603662e-53 |
| MsG0280008395.01 | MsG0780036766.01 | 0.812544 | 4.019775e-51 | 2.563114e-48 |
| MsG0780036766.01 | MsG0780037460.01 | 0.833106 | 6.453320e-56 | 7.358869e-53 |
| MsG0780036766.01 | MsG0780038377.01 | 0.819495 | 1.127284e-52 | 8.688913e-50 |
| MsG0780036766.01 | MsG0780038907.01 | 0.820005 | 8.617488e-53 | 6.737540e-50 |
| MsG0780036766.01 | MsG0780039940.01 | 0.815662 | 8.240126e-52 | 5.716328e-49 |
| MsG0780036766.01 | MsG0880047063.01 | 0.800565 | 1.357820e-48 | 6.342717e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036766.01.T01 | MTR_7g018500 | 93.421 | 380 | 17 | 4 | 1 | 378 | 1 | 374 | 0.0 | 541 |
| MsG0780036766.01.T01 | MTR_6g017055 | 47.922 | 361 | 102 | 17 | 73 | 371 | 67 | 403 | 1.64e-72 | 232 |
| MsG0780036766.01.T01 | MTR_1g103380 | 35.340 | 382 | 164 | 14 | 43 | 356 | 119 | 485 | 9.90e-42 | 153 |
| MsG0780036766.01.T01 | MTR_4g111935 | 33.459 | 266 | 141 | 11 | 5 | 245 | 14 | 268 | 1.11e-26 | 110 |
| MsG0780036766.01.T01 | MTR_2g078200 | 53.846 | 65 | 30 | 0 | 115 | 179 | 15 | 79 | 7.56e-17 | 80.5 |
| MsG0780036766.01.T01 | MTR_2g090960 | 51.562 | 64 | 31 | 0 | 115 | 178 | 19 | 82 | 1.70e-16 | 80.1 |
| MsG0780036766.01.T01 | MTR_4g079580 | 52.308 | 65 | 31 | 0 | 115 | 179 | 17 | 81 | 2.15e-16 | 79.7 |
| MsG0780036766.01.T01 | MTR_8g463380 | 52.308 | 65 | 31 | 0 | 115 | 179 | 49 | 113 | 2.21e-16 | 80.5 |
| MsG0780036766.01.T01 | MTR_6g015350 | 47.561 | 82 | 41 | 1 | 119 | 200 | 48 | 127 | 5.73e-16 | 78.6 |
| MsG0780036766.01.T01 | MTR_7g015010 | 51.667 | 60 | 29 | 0 | 119 | 178 | 56 | 115 | 2.34e-14 | 73.9 |
| MsG0780036766.01.T01 | MTR_4g109660 | 48.333 | 60 | 31 | 0 | 119 | 178 | 55 | 114 | 6.83e-13 | 69.3 |
| MsG0780036766.01.T01 | MTR_3g026050 | 48.333 | 60 | 31 | 0 | 119 | 178 | 56 | 115 | 3.38e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036766.01.T01 | AT1G67260 | 37.546 | 269 | 129 | 12 | 73 | 312 | 47 | 305 | 6.29e-34 | 129 |
| MsG0780036766.01.T01 | AT1G67260 | 37.546 | 269 | 129 | 12 | 73 | 312 | 47 | 305 | 6.29e-34 | 129 |
| MsG0780036766.01.T01 | AT1G67260 | 37.546 | 269 | 129 | 12 | 73 | 312 | 47 | 305 | 7.09e-34 | 129 |
| MsG0780036766.01.T01 | AT1G68800 | 54.867 | 113 | 42 | 4 | 120 | 229 | 112 | 218 | 2.18e-25 | 105 |
| MsG0780036766.01.T01 | AT1G68800 | 54.867 | 113 | 42 | 4 | 120 | 229 | 112 | 218 | 2.65e-25 | 105 |
| MsG0780036766.01.T01 | AT3G18550 | 39.216 | 153 | 69 | 3 | 113 | 241 | 141 | 293 | 9.58e-22 | 96.7 |
| MsG0780036766.01.T01 | AT3G18550 | 37.580 | 157 | 70 | 4 | 113 | 241 | 141 | 297 | 1.38e-20 | 93.2 |
| MsG0780036766.01.T01 | AT3G18550 | 37.580 | 157 | 70 | 4 | 113 | 241 | 141 | 297 | 2.02e-20 | 92.8 |
| MsG0780036766.01.T01 | AT3G18550 | 37.580 | 157 | 70 | 4 | 113 | 241 | 141 | 297 | 2.02e-20 | 92.8 |
| MsG0780036766.01.T01 | AT4G18390 | 37.671 | 146 | 87 | 3 | 103 | 248 | 27 | 168 | 2.69e-18 | 85.9 |
| MsG0780036766.01.T01 | AT4G18390 | 37.671 | 146 | 87 | 3 | 103 | 248 | 27 | 168 | 2.69e-18 | 85.9 |
| MsG0780036766.01.T01 | AT1G30210 | 53.968 | 63 | 29 | 0 | 116 | 178 | 46 | 108 | 1.79e-16 | 80.1 |
| MsG0780036766.01.T01 | AT1G30210 | 53.968 | 63 | 29 | 0 | 116 | 178 | 46 | 108 | 1.79e-16 | 80.1 |
| MsG0780036766.01.T01 | AT1G53230 | 51.515 | 66 | 32 | 0 | 115 | 180 | 44 | 109 | 2.77e-16 | 80.1 |
| MsG0780036766.01.T01 | AT1G53230 | 51.515 | 66 | 32 | 0 | 115 | 180 | 44 | 109 | 2.77e-16 | 80.1 |
| MsG0780036766.01.T01 | AT3G15030 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 3.22e-16 | 80.1 |
| MsG0780036766.01.T01 | AT3G15030 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 3.22e-16 | 80.1 |
| MsG0780036766.01.T01 | AT3G15030 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 3.22e-16 | 80.1 |
| MsG0780036766.01.T01 | AT3G15030 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 3.22e-16 | 80.1 |
| MsG0780036766.01.T01 | AT2G31070 | 51.562 | 64 | 31 | 0 | 115 | 178 | 24 | 87 | 6.14e-16 | 79.0 |
| MsG0780036766.01.T01 | AT3G02150 | 53.333 | 60 | 28 | 0 | 119 | 178 | 73 | 132 | 1.27e-14 | 73.9 |
| MsG0780036766.01.T01 | AT3G02150 | 53.333 | 60 | 28 | 0 | 119 | 178 | 73 | 132 | 2.01e-14 | 74.3 |
| MsG0780036766.01.T01 | AT5G60970 | 46.667 | 60 | 32 | 0 | 119 | 178 | 62 | 121 | 9.90e-13 | 69.3 |
| MsG0780036766.01.T01 | AT5G08070 | 45.000 | 60 | 33 | 0 | 119 | 178 | 32 | 91 | 2.73e-11 | 63.5 |
| MsG0780036766.01.T01 | AT5G08070 | 45.000 | 60 | 33 | 0 | 119 | 178 | 32 | 91 | 2.73e-11 | 63.5 |
Find 66 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCAACTTATTGCTCTTT+AGG | 0.129653 | 7:+13478181 | MsG0780036766.01.T01:CDS |
| ATCCTGATACACTAACAAAT+TGG | 0.193845 | 7:+13478407 | MsG0780036766.01.T01:CDS |
| GCCCAATTTGTTAGTGTATC+AGG | 0.208804 | 7:-13478409 | None:intergenic |
| GTTATATAGCTATGTTCTTA+TGG | 0.209403 | 7:-13478080 | None:intergenic |
| CTCCAATGTTATCACCAAAT+TGG | 0.217754 | 7:+13479136 | MsG0780036766.01.T01:CDS |
| GTTAGTGTATCAGGATTAAT+TGG | 0.223236 | 7:-13478400 | None:intergenic |
| CTTCGAAGACGAAGGATTCT+AGG | 0.286350 | 7:+13478842 | MsG0780036766.01.T01:CDS |
| TTCTTAGCTGGTTTCTTGAC+AGG | 0.328037 | 7:-13478514 | None:intergenic |
| TGTGAAGAAGAAGATGAATT+AGG | 0.330614 | 7:-13478223 | None:intergenic |
| TTCGATCTTCAAGACATGTT+AGG | 0.334610 | 7:+13478619 | MsG0780036766.01.T01:CDS |
| CTATGCCTGTCTTTCTTAGC+TGG | 0.335007 | 7:-13478526 | None:intergenic |
| TTTGAAGTTTCATCCTCATT+AGG | 0.336904 | 7:-13478979 | None:intergenic |
| TTATTATTAGCATCCCAATT+TGG | 0.341400 | 7:-13479150 | None:intergenic |
| TTATATAGCTATGTTCTTAT+GGG | 0.343961 | 7:-13478079 | None:intergenic |
| GAGCCATTCAAGTGTGTTGC+TGG | 0.358400 | 7:-13478653 | None:intergenic |
| TCATGACAATCACTATTATT+AGG | 0.360860 | 7:-13479111 | None:intergenic |
| AATATCAGCTAATATCGATT+TGG | 0.375751 | 7:-13479419 | None:intergenic |
| TCAGGGGTAAGAAAAGTAAA+AGG | 0.386359 | 7:-13478256 | None:intergenic |
| TTCAAATCTTTGGAAAATCA+TGG | 0.409744 | 7:+13479378 | MsG0780036766.01.T01:CDS |
| AAAGTTGTTGATGTTGTTGT+TGG | 0.410045 | 7:-13478320 | None:intergenic |
| TCCAATGTTATCACCAAATT+GGG | 0.411724 | 7:+13479137 | MsG0780036766.01.T01:CDS |
| CTAAAGATAGAAAGATGAAA+AGG | 0.414926 | 7:+13478806 | MsG0780036766.01.T01:CDS |
| TCTTGATATTGCAGAAAAGT+TGG | 0.424180 | 7:-13479199 | None:intergenic |
| TCTTCTTCGTCTTCCGATGA+AGG | 0.430527 | 7:+13478766 | MsG0780036766.01.T01:CDS |
| TCCTGATACACTAACAAATT+GGG | 0.434497 | 7:+13478408 | MsG0780036766.01.T01:CDS |
| TCGATCTTCAAGACATGTTA+GGG | 0.442491 | 7:+13478620 | MsG0780036766.01.T01:CDS |
| GGTGTTGTTAGTGTTGTTGT+TGG | 0.445348 | 7:-13478299 | None:intergenic |
| AGCAAGAACAACATAGCTTC+TGG | 0.450038 | 7:+13478715 | MsG0780036766.01.T01:CDS |
| ATCAATTGATGAAGGATTTG+TGG | 0.452195 | 7:-13478955 | None:intergenic |
| TTGTTGTGAAACAAGAAACT+AGG | 0.471445 | 7:+13478116 | MsG0780036766.01.T01:five_prime_UTR |
| TGATGAGTTGTTTGTGTGTA+GGG | 0.490224 | 7:-13478370 | None:intergenic |
| AATAACAATGATGCTGTCAC+TGG | 0.496363 | 7:+13479171 | MsG0780036766.01.T01:CDS |
| CATTAGGCATCAATTGATGA+AGG | 0.499616 | 7:-13478963 | None:intergenic |
| CCTAAAGAGCAATAAGTTGA+AGG | 0.500471 | 7:-13478181 | None:intergenic |
| GATTGATTACTTAACTCAGA+TGG | 0.502518 | 7:-13478147 | None:intergenic |
| TCAAGAACGAATCTATCATC+AGG | 0.510472 | 7:+13479216 | MsG0780036766.01.T01:CDS |
| ATCTTCTTCATCTCCTTCAT+CGG | 0.512276 | 7:-13478779 | None:intergenic |
| AAAGATGAAAAGGGCACAGA+AGG | 0.517893 | 7:+13478816 | MsG0780036766.01.T01:CDS |
| AGCAAGATTCACACATCTCA+AGG | 0.519514 | 7:+13478547 | MsG0780036766.01.T01:CDS |
| TGTTGTGAAACAAGAAACTA+GGG | 0.521317 | 7:+13478117 | MsG0780036766.01.T01:five_prime_UTR |
| TAAAGATAGAAAGATGAAAA+GGG | 0.526209 | 7:+13478807 | MsG0780036766.01.T01:CDS |
| TCAAATCTTTGGAAAATCAT+GGG | 0.526493 | 7:+13479379 | MsG0780036766.01.T01:CDS |
| GAACTTCCTCGCGATCTCGA+TGG | 0.528472 | 7:-13478596 | None:intergenic |
| TAGGGAACAGAAATAGCTGC+TGG | 0.529350 | 7:-13478352 | None:intergenic |
| AGAAAACAAGAGCAAGAGCA+AGG | 0.530089 | 7:+13478866 | MsG0780036766.01.T01:CDS |
| AAGCCAGCAACACACTTGAA+TGG | 0.532128 | 7:+13478650 | MsG0780036766.01.T01:CDS |
| AGAAACCAGCTAAGAAAGAC+AGG | 0.535037 | 7:+13478521 | MsG0780036766.01.T01:CDS |
| TCATCAATTGATGCCTAATG+AGG | 0.536962 | 7:+13478966 | MsG0780036766.01.T01:CDS |
| TTCGAAGACGAAGGATTCTA+GGG | 0.537014 | 7:+13478843 | MsG0780036766.01.T01:CDS |
| TGATATCTTTAACTTCATTG+AGG | 0.548363 | 7:+13479017 | MsG0780036766.01.T01:CDS |
| GGGGTAAGAAAAGTAAAAGG+AGG | 0.548490 | 7:-13478253 | None:intergenic |
| TTAGGATTATAACAAGGGTA+AGG | 0.556043 | 7:-13478205 | None:intergenic |
| TCCCAATTTGGTGATAACAT+TGG | 0.563066 | 7:-13479138 | None:intergenic |
| ATGAATTAGGATTATAACAA+GGG | 0.570279 | 7:-13478210 | None:intergenic |
| GGGTAAGAAAAGTAAAAGGA+GGG | 0.575339 | 7:-13478252 | None:intergenic |
| ATGATGAGTTGTTTGTGTGT+AGG | 0.581066 | 7:-13478371 | None:intergenic |
| CAGCTAATATCGATTTGGAC+TGG | 0.588709 | 7:-13479414 | None:intergenic |
| GAAAACAAGAGCAAGAGCAA+GGG | 0.591086 | 7:+13478867 | MsG0780036766.01.T01:CDS |
| GATGAATTAGGATTATAACA+AGG | 0.592158 | 7:-13478211 | None:intergenic |
| CTCAAGGTTTGAGAGACAGA+AGG | 0.592962 | 7:+13478563 | MsG0780036766.01.T01:CDS |
| GACTTTCCATCGAGATCGCG+AGG | 0.608900 | 7:+13478590 | MsG0780036766.01.T01:CDS |
| TCAAGGTTTGAGAGACAGAA+GGG | 0.615028 | 7:+13478564 | MsG0780036766.01.T01:CDS |
| AATCTTTGGAAAATCATGGG+AGG | 0.624471 | 7:+13479382 | MsG0780036766.01.T01:CDS |
| GAAGGAATCTTCGAAGACGA+AGG | 0.639563 | 7:+13478834 | MsG0780036766.01.T01:CDS |
| GCTTCTGGCGATGACGACGA+TGG | 0.659720 | 7:+13478730 | MsG0780036766.01.T01:CDS |
| ATGTTGAAACAAGATCTAAG+TGG | 0.698091 | 7:+13478451 | MsG0780036766.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAAATTAATTAACAAAA+AGG | + | Chr7:13479281-13479300 | MsG0780036766.01.T01:intron | 10.0% |
| !!! | TTTTAGGTTTAAACTTTTTA+GGG | + | Chr7:13479354-13479373 | MsG0780036766.01.T01:intron | 15.0% |
| !!! | TTTTTAGGTTTAAACTTTTT+AGG | + | Chr7:13479353-13479372 | MsG0780036766.01.T01:intron | 15.0% |
| !! | ATGAATTAGGATTATAACAA+GGG | - | Chr7:13478213-13478232 | None:intergenic | 20.0% |
| !! | TAAAGATAGAAAGATGAAAA+GGG | + | Chr7:13478807-13478826 | MsG0780036766.01.T01:CDS | 20.0% |
| !! | TTATATAGCTATGTTCTTAT+GGG | - | Chr7:13478082-13478101 | None:intergenic | 20.0% |
| !!! | TTGTGATACTTACAATTTTT+AGG | + | Chr7:13479338-13479357 | MsG0780036766.01.T01:intron | 20.0% |
| ! | CTAAAGATAGAAAGATGAAA+AGG | + | Chr7:13478806-13478825 | MsG0780036766.01.T01:CDS | 25.0% |
| ! | GATGAATTAGGATTATAACA+AGG | - | Chr7:13478214-13478233 | None:intergenic | 25.0% |
| ! | GTTATATAGCTATGTTCTTA+TGG | - | Chr7:13478083-13478102 | None:intergenic | 25.0% |
| ! | TCATGACAATCACTATTATT+AGG | - | Chr7:13479114-13479133 | None:intergenic | 25.0% |
| ! | TTATTATTAGCATCCCAATT+TGG | - | Chr7:13479153-13479172 | None:intergenic | 25.0% |
| !! | TCAAATCTTTGGAAAATCAT+GGG | + | Chr7:13479379-13479398 | MsG0780036766.01.T01:CDS | 25.0% |
| !! | TGATATCTTTAACTTCATTG+AGG | + | Chr7:13479017-13479036 | MsG0780036766.01.T01:CDS | 25.0% |
| !! | TTCAAATCTTTGGAAAATCA+TGG | + | Chr7:13479378-13479397 | MsG0780036766.01.T01:CDS | 25.0% |
| AAAGTTGTTGATGTTGTTGT+TGG | - | Chr7:13478323-13478342 | None:intergenic | 30.0% | |
| ATCAATTGATGAAGGATTTG+TGG | - | Chr7:13478958-13478977 | None:intergenic | 30.0% | |
| ATCCTGATACACTAACAAAT+TGG | + | Chr7:13478407-13478426 | MsG0780036766.01.T01:CDS | 30.0% | |
| ATGTTGAAACAAGATCTAAG+TGG | + | Chr7:13478451-13478470 | MsG0780036766.01.T01:CDS | 30.0% | |
| GATTGATTACTTAACTCAGA+TGG | - | Chr7:13478150-13478169 | None:intergenic | 30.0% | |
| GTTAGTGTATCAGGATTAAT+TGG | - | Chr7:13478403-13478422 | None:intergenic | 30.0% | |
| TCCAATGTTATCACCAAATT+GGG | + | Chr7:13479137-13479156 | MsG0780036766.01.T01:CDS | 30.0% | |
| TCCTGATACACTAACAAATT+GGG | + | Chr7:13478408-13478427 | MsG0780036766.01.T01:CDS | 30.0% | |
| TCTTGATATTGCAGAAAAGT+TGG | - | Chr7:13479202-13479221 | None:intergenic | 30.0% | |
| TGTGAAGAAGAAGATGAATT+AGG | - | Chr7:13478226-13478245 | None:intergenic | 30.0% | |
| TGTTGTGAAACAAGAAACTA+GGG | + | Chr7:13478117-13478136 | MsG0780036766.01.T01:five_prime_UTR | 30.0% | |
| TTAGGATTATAACAAGGGTA+AGG | - | Chr7:13478208-13478227 | None:intergenic | 30.0% | |
| TTGTTGTGAAACAAGAAACT+AGG | + | Chr7:13478116-13478135 | MsG0780036766.01.T01:five_prime_UTR | 30.0% | |
| ! | TTTGAAGTTTCATCCTCATT+AGG | - | Chr7:13478982-13479001 | None:intergenic | 30.0% |
| !! | TGTGGATTTTGATCAATTTC+AGG | - | Chr7:13478940-13478959 | None:intergenic | 30.0% |
| !!! | TAGAAGAAGCATTTTGATCA+GGG | - | Chr7:13478276-13478295 | None:intergenic | 30.0% |
| !!! | TTAGAAGAAGCATTTTGATC+AGG | - | Chr7:13478277-13478296 | None:intergenic | 30.0% |
| !!! | TTTTTAGGGCTTCAAATCTT+TGG | + | Chr7:13479368-13479387 | MsG0780036766.01.T01:CDS | 30.0% |
| AATAACAATGATGCTGTCAC+TGG | + | Chr7:13479171-13479190 | MsG0780036766.01.T01:CDS | 35.0% | |
| ATCTTCTTCATCTCCTTCAT+CGG | - | Chr7:13478782-13478801 | None:intergenic | 35.0% | |
| ATGATGAGTTGTTTGTGTGT+AGG | - | Chr7:13478374-13478393 | None:intergenic | 35.0% | |
| CATTAGGCATCAATTGATGA+AGG | - | Chr7:13478966-13478985 | None:intergenic | 35.0% | |
| CCTTCAACTTATTGCTCTTT+AGG | + | Chr7:13478181-13478200 | MsG0780036766.01.T01:CDS | 35.0% | |
| CTCCAATGTTATCACCAAAT+TGG | + | Chr7:13479136-13479155 | MsG0780036766.01.T01:CDS | 35.0% | |
| GGGTAAGAAAAGTAAAAGGA+GGG | - | Chr7:13478255-13478274 | None:intergenic | 35.0% | |
| TCAAGAACGAATCTATCATC+AGG | + | Chr7:13479216-13479235 | MsG0780036766.01.T01:CDS | 35.0% | |
| TCAGGGGTAAGAAAAGTAAA+AGG | - | Chr7:13478259-13478278 | None:intergenic | 35.0% | |
| TCATCAATTGATGCCTAATG+AGG | + | Chr7:13478966-13478985 | MsG0780036766.01.T01:CDS | 35.0% | |
| TCGATCTTCAAGACATGTTA+GGG | + | Chr7:13478620-13478639 | MsG0780036766.01.T01:CDS | 35.0% | |
| TGATGAGTTGTTTGTGTGTA+GGG | - | Chr7:13478373-13478392 | None:intergenic | 35.0% | |
| TTCGATCTTCAAGACATGTT+AGG | + | Chr7:13478619-13478638 | MsG0780036766.01.T01:CDS | 35.0% | |
| ! | AATCTTTGGAAAATCATGGG+AGG | + | Chr7:13479382-13479401 | MsG0780036766.01.T01:CDS | 35.0% |
| ! | CCTAAAGAGCAATAAGTTGA+AGG | - | Chr7:13478184-13478203 | None:intergenic | 35.0% |
| ! | TCCCAATTTGGTGATAACAT+TGG | - | Chr7:13479141-13479160 | None:intergenic | 35.0% |
| !!! | AGAAGAAGCATTTTGATCAG+GGG | - | Chr7:13478275-13478294 | None:intergenic | 35.0% |
| AGAAAACAAGAGCAAGAGCA+AGG | + | Chr7:13478866-13478885 | MsG0780036766.01.T01:CDS | 40.0% | |
| AGAAACCAGCTAAGAAAGAC+AGG | + | Chr7:13478521-13478540 | MsG0780036766.01.T01:CDS | 40.0% | |
| AGCAAGAACAACATAGCTTC+TGG | + | Chr7:13478715-13478734 | MsG0780036766.01.T01:CDS | 40.0% | |
| AGCAAGATTCACACATCTCA+AGG | + | Chr7:13478547-13478566 | MsG0780036766.01.T01:CDS | 40.0% | |
| GAAAACAAGAGCAAGAGCAA+GGG | + | Chr7:13478867-13478886 | MsG0780036766.01.T01:CDS | 40.0% | |
| GGGGTAAGAAAAGTAAAAGG+AGG | - | Chr7:13478256-13478275 | None:intergenic | 40.0% | |
| TCAAGGTTTGAGAGACAGAA+GGG | + | Chr7:13478564-13478583 | MsG0780036766.01.T01:CDS | 40.0% | |
| TTCGAAGACGAAGGATTCTA+GGG | + | Chr7:13478843-13478862 | MsG0780036766.01.T01:CDS | 40.0% | |
| ! | AAAGATGAAAAGGGCACAGA+AGG | + | Chr7:13478816-13478835 | MsG0780036766.01.T01:CDS | 40.0% |
| ! | TTCTTAGCTGGTTTCTTGAC+AGG | - | Chr7:13478517-13478536 | None:intergenic | 40.0% |
| !! | GCCCAATTTGTTAGTGTATC+AGG | - | Chr7:13478412-13478431 | None:intergenic | 40.0% |
| !! | GGTGTTGTTAGTGTTGTTGT+TGG | - | Chr7:13478302-13478321 | None:intergenic | 40.0% |
| AAGCCAGCAACACACTTGAA+TGG | + | Chr7:13478650-13478669 | MsG0780036766.01.T01:CDS | 45.0% | |
| CTATGCCTGTCTTTCTTAGC+TGG | - | Chr7:13478529-13478548 | None:intergenic | 45.0% | |
| CTCAAGGTTTGAGAGACAGA+AGG | + | Chr7:13478563-13478582 | MsG0780036766.01.T01:CDS | 45.0% | |
| CTTCGAAGACGAAGGATTCT+AGG | + | Chr7:13478842-13478861 | MsG0780036766.01.T01:CDS | 45.0% | |
| GAAGGAATCTTCGAAGACGA+AGG | + | Chr7:13478834-13478853 | MsG0780036766.01.T01:CDS | 45.0% | |
| TAGGGAACAGAAATAGCTGC+TGG | - | Chr7:13478355-13478374 | None:intergenic | 45.0% | |
| TCTTCTTCGTCTTCCGATGA+AGG | + | Chr7:13478766-13478785 | MsG0780036766.01.T01:CDS | 45.0% | |
| GAGCCATTCAAGTGTGTTGC+TGG | - | Chr7:13478656-13478675 | None:intergenic | 50.0% | |
| GAACTTCCTCGCGATCTCGA+TGG | - | Chr7:13478599-13478618 | None:intergenic | 55.0% | |
| GACTTTCCATCGAGATCGCG+AGG | + | Chr7:13478590-13478609 | MsG0780036766.01.T01:CDS | 55.0% | |
| GCTTCTGGCGATGACGACGA+TGG | + | Chr7:13478730-13478749 | MsG0780036766.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 13478067 | 13479433 | 13478067 | ID=MsG0780036766.01;Name=MsG0780036766.01 |
| Chr7 | mRNA | 13478067 | 13479433 | 13478067 | ID=MsG0780036766.01.T01;Parent=MsG0780036766.01;Name=MsG0780036766.01.T01;_AED=0.13;_eAED=0.13;_QI=108|0|0.5|1|1|1|2|0|378 |
| Chr7 | exon | 13478067 | 13479237 | 13478067 | ID=MsG0780036766.01.T01:exon:2592;Parent=MsG0780036766.01.T01 |
| Chr7 | exon | 13479360 | 13479433 | 13479360 | ID=MsG0780036766.01.T01:exon:2593;Parent=MsG0780036766.01.T01 |
| Chr7 | five_prime_UTR | 13478067 | 13478174 | 13478067 | ID=MsG0780036766.01.T01:five_prime_utr;Parent=MsG0780036766.01.T01 |
| Chr7 | CDS | 13478175 | 13479237 | 13478175 | ID=MsG0780036766.01.T01:cds;Parent=MsG0780036766.01.T01 |
| Chr7 | CDS | 13479360 | 13479433 | 13479360 | ID=MsG0780036766.01.T01:cds;Parent=MsG0780036766.01.T01 |
| Gene Sequence |
| Protein sequence |
