Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480022788.01.T01 | AIU47059.1 | 78.03 | 132 | 27 | 2 | 2 | 131 | 64 | 195 | 2.00E-60 | 197 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480022788.01.T01 | Q0WPS2 | 52.033 | 123 | 57 | 2 | 5 | 125 | 73 | 195 | 2.23E-36 | 129 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480022788.01.T01 | A0A097PHP3 | 78.030 | 132 | 27 | 2 | 2 | 131 | 64 | 195 | 9.55e-61 | 197 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048856.01 | MsG0480022788.01 | 0.843263 | 1.560361e-58 | 2.427928e-55 |
MsG0180000139.01 | MsG0480022788.01 | 0.834380 | 3.099894e-56 | 3.672440e-53 |
MsG0180000145.01 | MsG0480022788.01 | 0.802538 | 5.349273e-49 | 2.627042e-46 |
MsG0180000178.01 | MsG0480022788.01 | 0.817147 | 3.834262e-52 | 2.770118e-49 |
MsG0180000334.01 | MsG0480022788.01 | 0.802899 | 4.506987e-49 | 2.233875e-46 |
MsG0180000335.01 | MsG0480022788.01 | 0.800403 | 1.465347e-48 | 6.817059e-46 |
MsG0180000470.01 | MsG0480022788.01 | 0.821809 | 3.314077e-53 | 2.724655e-50 |
MsG0180000835.01 | MsG0480022788.01 | 0.808727 | 2.686619e-50 | 1.547709e-47 |
MsG0180001172.01 | MsG0480022788.01 | 0.805735 | 1.156182e-49 | 6.164190e-47 |
MsG0180001892.01 | MsG0480022788.01 | 0.833422 | 5.380951e-56 | 6.194049e-53 |
MsG0180003188.01 | MsG0480022788.01 | 0.810452 | 1.144904e-50 | 6.903613e-48 |
MsG0180003403.01 | MsG0480022788.01 | 0.819162 | 1.342307e-52 | 1.025004e-49 |
MsG0180003455.01 | MsG0480022788.01 | 0.845346 | 4.302102e-59 | 7.148326e-56 |
MsG0180003773.01 | MsG0480022788.01 | 0.810649 | 1.037663e-50 | 6.290300e-48 |
MsG0180003920.01 | MsG0480022788.01 | 0.811853 | 5.687827e-51 | 3.559565e-48 |
MsG0180003943.01 | MsG0480022788.01 | 0.817056 | 4.020096e-52 | 2.897221e-49 |
MsG0180003951.01 | MsG0480022788.01 | 0.835654 | 1.479255e-56 | 1.820621e-53 |
MsG0180004389.01 | MsG0480022788.01 | 0.803300 | 3.723376e-49 | 1.864386e-46 |
MsG0180004463.01 | MsG0480022788.01 | 0.835372 | 1.744199e-56 | 2.128736e-53 |
MsG0180004482.01 | MsG0480022788.01 | 0.813203 | 2.882361e-51 | 1.870199e-48 |
MsG0180004707.01 | MsG0480022788.01 | 0.804795 | 1.819482e-49 | 9.468531e-47 |
MsG0180004765.01 | MsG0480022788.01 | 0.836224 | 1.060387e-56 | 1.327977e-53 |
MsG0180004975.01 | MsG0480022788.01 | 0.837620 | 4.668193e-57 | 6.098425e-54 |
MsG0180005153.01 | MsG0480022788.01 | 0.806034 | 1.000470e-49 | 5.374753e-47 |
MsG0180005575.01 | MsG0480022788.01 | 0.808591 | 2.872557e-50 | 1.648992e-47 |
MsG0180005763.01 | MsG0480022788.01 | 0.806163 | 9.399757e-50 | 5.066463e-47 |
MsG0180006257.01 | MsG0480022788.01 | 0.826616 | 2.460319e-54 | 2.319041e-51 |
MsG0280006299.01 | MsG0480022788.01 | 0.807824 | 4.186217e-50 | 2.355153e-47 |
MsG0280010650.01 | MsG0480022788.01 | 0.825118 | 5.580456e-54 | 5.040494e-51 |
MsG0280010778.01 | MsG0480022788.01 | 0.814255 | 1.691119e-51 | 1.129111e-48 |
MsG0280010788.01 | MsG0480022788.01 | 0.827159 | 1.825243e-54 | 1.747792e-51 |
MsG0280011014.01 | MsG0480022788.01 | 0.801392 | 9.200654e-49 | 4.388736e-46 |
MsG0280011305.01 | MsG0480022788.01 | 0.816653 | 4.949457e-52 | 3.527885e-49 |
MsG0280011339.01 | MsG0480022788.01 | 0.813259 | 2.801649e-51 | 1.820622e-48 |
MsG0280011341.01 | MsG0480022788.01 | 0.829245 | 5.733269e-55 | 5.835271e-52 |
MsG0280011416.01 | MsG0480022788.01 | 0.814722 | 1.333037e-51 | 9.013537e-49 |
MsG0380012067.01 | MsG0480022788.01 | 0.802817 | 4.686662e-49 | 2.318152e-46 |
MsG0380012460.01 | MsG0480022788.01 | 0.808579 | 2.889580e-50 | 1.658254e-47 |
MsG0380013178.01 | MsG0480022788.01 | 0.816940 | 4.267128e-52 | 3.065679e-49 |
MsG0380013183.01 | MsG0480022788.01 | 0.813842 | 2.085953e-51 | 1.377186e-48 |
MsG0380013475.01 | MsG0480022788.01 | 0.821233 | 4.501768e-53 | 3.641686e-50 |
MsG0380013834.01 | MsG0480022788.01 | 0.809439 | 1.890925e-50 | 1.110269e-47 |
MsG0380014468.01 | MsG0480022788.01 | 0.804423 | 2.175328e-49 | 1.121135e-46 |
MsG0380014495.01 | MsG0480022788.01 | 0.835115 | 2.024248e-56 | 2.451334e-53 |
MsG0380014498.01 | MsG0480022788.01 | 0.800856 | 1.184547e-48 | 5.574494e-46 |
MsG0380014537.01 | MsG0480022788.01 | 0.805730 | 1.159247e-49 | 6.179676e-47 |
MsG0480018465.01 | MsG0480022788.01 | 0.801046 | 1.082912e-48 | 5.121077e-46 |
MsG0480019206.01 | MsG0480022788.01 | 0.825751 | 3.951121e-54 | 3.633752e-51 |
MsG0480019350.01 | MsG0480022788.01 | 0.805933 | 1.050832e-49 | 5.630723e-47 |
MsG0480020739.01 | MsG0480022788.01 | 0.853650 | 2.076307e-61 | 4.517910e-58 |
MsG0480020780.01 | MsG0480022788.01 | 0.810249 | 1.266285e-50 | 7.595080e-48 |
MsG0480020909.01 | MsG0480022788.01 | 0.821993 | 3.004245e-53 | 2.482727e-50 |
MsG0480021056.01 | MsG0480022788.01 | 0.827603 | 1.428323e-54 | 1.385392e-51 |
MsG0480021491.01 | MsG0480022788.01 | 0.802537 | 5.352515e-49 | 2.628530e-46 |
MsG0480021727.01 | MsG0480022788.01 | 0.809169 | 2.161230e-50 | 1.259874e-47 |
MsG0480022045.01 | MsG0480022788.01 | 0.839792 | 1.282027e-57 | 1.789811e-54 |
MsG0480022060.01 | MsG0480022788.01 | 0.800235 | 1.585042e-48 | 7.342424e-46 |
MsG0480022213.01 | MsG0480022788.01 | -0.800591 | 1.341573e-48 | 6.270975e-46 |
MsG0480022788.01 | MsG0480023354.01 | 0.800173 | 1.631576e-48 | 7.546001e-46 |
MsG0480022788.01 | MsG0480023463.01 | 0.869780 | 2.396454e-66 | 9.101994e-63 |
MsG0480022788.01 | MsG0480023488.01 | 0.826701 | 2.347394e-54 | 2.218023e-51 |
MsG0480022788.01 | MsG0480023489.01 | 0.821632 | 3.641318e-53 | 2.978508e-50 |
MsG0480022788.01 | MsG0580024038.01 | 0.813564 | 2.400936e-51 | 1.573300e-48 |
MsG0480022788.01 | MsG0580024197.01 | 0.805628 | 1.217676e-49 | 6.473785e-47 |
MsG0480022788.01 | MsG0580024463.01 | 0.813091 | 3.050515e-51 | 1.973264e-48 |
MsG0480022788.01 | MsG0580025332.01 | 0.814903 | 1.215531e-51 | 8.258631e-49 |
MsG0480022788.01 | MsG0580025899.01 | 0.804264 | 2.348339e-49 | 1.205367e-46 |
MsG0480022788.01 | MsG0580027091.01 | 0.810458 | 1.141348e-50 | 6.883276e-48 |
MsG0480022788.01 | MsG0580027431.01 | 0.804396 | 2.203947e-49 | 1.135102e-46 |
MsG0480022788.01 | MsG0580027650.01 | 0.816390 | 5.668717e-52 | 4.011423e-49 |
MsG0480022788.01 | MsG0580027922.01 | 0.812292 | 4.562435e-51 | 2.889625e-48 |
MsG0480022788.01 | MsG0580029640.01 | 0.822601 | 2.170624e-53 | 1.825479e-50 |
MsG0480022788.01 | MsG0580029925.01 | 0.811263 | 7.642285e-51 | 4.708736e-48 |
MsG0480022788.01 | MsG0680030880.01 | 0.832656 | 8.345768e-56 | 9.389426e-53 |
MsG0480022788.01 | MsG0680030881.01 | 0.809844 | 1.547991e-50 | 9.187075e-48 |
MsG0480022788.01 | MsG0680030882.01 | 0.809771 | 1.605052e-50 | 9.507869e-48 |
MsG0480022788.01 | MsG0680031431.01 | 0.813439 | 2.557893e-51 | 1.670525e-48 |
MsG0480022788.01 | MsG0680031488.01 | 0.817451 | 3.275880e-52 | 2.386609e-49 |
MsG0480022788.01 | MsG0680031617.01 | 0.819324 | 1.232857e-52 | 9.456482e-50 |
MsG0480022788.01 | MsG0680032771.01 | 0.831598 | 1.524755e-55 | 1.662588e-52 |
MsG0480022788.01 | MsG0680034739.01 | 0.812450 | 4.214536e-51 | 2.680714e-48 |
MsG0480022788.01 | MsG0680035123.01 | 0.807490 | 4.926824e-50 | 2.747963e-47 |
MsG0480022788.01 | MsG0680035475.01 | 0.810661 | 1.031747e-50 | 6.256408e-48 |
MsG0480022788.01 | MsG0680035498.01 | 0.806372 | 8.492350e-50 | 4.601648e-47 |
MsG0480022788.01 | MsG0680035580.01 | 0.814787 | 1.289526e-51 | 8.734367e-49 |
MsG0480022788.01 | MsG0680035692.01 | 0.822545 | 2.236668e-53 | 1.877955e-50 |
MsG0480022788.01 | MsG0780036477.01 | 0.824230 | 9.032940e-54 | 7.953603e-51 |
MsG0480022788.01 | MsG0780036602.01 | 0.804758 | 1.852696e-49 | 9.632107e-47 |
MsG0480022788.01 | MsG0780036752.01 | 0.808150 | 3.566935e-50 | 2.024187e-47 |
MsG0480022788.01 | MsG0780036757.01 | 0.802345 | 5.862191e-49 | 2.864920e-46 |
MsG0480022788.01 | MsG0780036766.01 | 0.807156 | 5.799506e-50 | 3.206638e-47 |
MsG0480022788.01 | MsG0780036815.01 | 0.811242 | 7.721146e-51 | 4.754744e-48 |
MsG0480022788.01 | MsG0780037054.01 | 0.846210 | 2.505666e-59 | 4.280608e-56 |
MsG0480022788.01 | MsG0780037460.01 | 0.827629 | 1.407584e-54 | 1.366283e-51 |
MsG0480022788.01 | MsG0780038377.01 | 0.813160 | 2.945200e-51 | 1.908718e-48 |
MsG0480022788.01 | MsG0780038401.01 | 0.823743 | 1.175221e-53 | 1.020801e-50 |
MsG0480022788.01 | MsG0780038439.01 | 0.812743 | 3.636188e-51 | 2.330628e-48 |
MsG0480022788.01 | MsG0780038690.01 | 0.803478 | 3.420011e-49 | 1.720420e-46 |
MsG0480022788.01 | MsG0780038691.01 | 0.826414 | 2.749449e-54 | 2.576774e-51 |
MsG0480022788.01 | MsG0780039170.01 | 0.810936 | 8.993432e-51 | 5.494174e-48 |
MsG0480022788.01 | MsG0780039243.01 | 0.802203 | 6.272396e-49 | 3.054072e-46 |
MsG0480022788.01 | MsG0780039443.01 | 0.815146 | 1.073604e-51 | 7.342511e-49 |
MsG0480022788.01 | MsG0780039520.01 | 0.804437 | 2.161384e-49 | 1.114360e-46 |
MsG0480022788.01 | MsG0780039866.01 | 0.814054 | 1.872451e-51 | 1.243380e-48 |
MsG0480022788.01 | MsG0780040057.01 | 0.850902 | 1.257692e-60 | 2.501335e-57 |
MsG0480022788.01 | MsG0780040074.01 | 0.810846 | 9.408983e-51 | 5.733873e-48 |
MsG0480022788.01 | MsG0780040669.01 | 0.812519 | 4.070045e-51 | 2.593409e-48 |
MsG0480022788.01 | MsG0880041863.01 | 0.820312 | 7.329442e-53 | 5.779172e-50 |
MsG0480022788.01 | MsG0880041986.01 | 0.824240 | 8.986317e-54 | 7.914447e-51 |
MsG0480022788.01 | MsG0880042091.01 | 0.826849 | 2.164147e-54 | 2.053563e-51 |
MsG0480022788.01 | MsG0880042380.01 | 0.802169 | 6.371787e-49 | 3.099926e-46 |
MsG0480022788.01 | MsG0880042412.01 | 0.816403 | 5.631733e-52 | 3.986641e-49 |
MsG0480022788.01 | MsG0880043479.01 | 0.825534 | 4.448635e-54 | 4.065878e-51 |
MsG0480022788.01 | MsG0880043480.01 | 0.814668 | 1.370477e-51 | 9.252710e-49 |
MsG0480022788.01 | MsG0880043941.01 | 0.803166 | 3.969258e-49 | 1.980762e-46 |
MsG0480022788.01 | MsG0880044210.01 | 0.829989 | 3.780642e-55 | 3.931906e-52 |
MsG0480022788.01 | MsG0880044323.01 | 0.810043 | 1.402186e-50 | 8.365572e-48 |
MsG0480022788.01 | MsG0880045294.01 | 0.825591 | 4.311838e-54 | 3.947323e-51 |
MsG0480022788.01 | MsG0880045372.01 | 0.804901 | 1.729414e-49 | 9.025009e-47 |
MsG0480022788.01 | MsG0880045453.01 | 0.800820 | 1.204746e-48 | 5.664105e-46 |
MsG0480022788.01 | MsG0880046012.01 | 0.826965 | 2.030051e-54 | 1.933035e-51 |
MsG0480022788.01 | MsG0880046284.01 | 0.811413 | 7.088455e-51 | 4.385004e-48 |
MsG0480022788.01 | MsG0880046645.01 | 0.810738 | 9.927036e-51 | 6.032187e-48 |
MsG0380014948.01 | MsG0480022788.01 | 0.803171 | 3.958592e-49 | 1.975727e-46 |
MsG0380015332.01 | MsG0480022788.01 | 0.845263 | 4.529571e-59 | 7.506470e-56 |
MsG0380015555.01 | MsG0480022788.01 | 0.830865 | 2.308637e-55 | 2.463115e-52 |
MsG0380015566.01 | MsG0480022788.01 | 0.809795 | 1.585505e-50 | 9.398023e-48 |
MsG0380015631.01 | MsG0480022788.01 | 0.810112 | 1.355270e-50 | 8.100141e-48 |
MsG0380015677.01 | MsG0480022788.01 | 0.820895 | 5.384550e-53 | 4.315183e-50 |
MsG0380015875.01 | MsG0480022788.01 | 0.818197 | 2.222051e-52 | 1.652276e-49 |
MsG0380016126.01 | MsG0480022788.01 | 0.810588 | 1.069655e-50 | 6.473675e-48 |
MsG0380016247.01 | MsG0480022788.01 | 0.830820 | 2.367600e-55 | 2.522690e-52 |
MsG0380016910.01 | MsG0480022788.01 | 0.806654 | 7.404816e-50 | 4.041148e-47 |
MsG0380016970.01 | MsG0480022788.01 | 0.814802 | 1.279458e-51 | 8.669855e-49 |
MsG0380017258.01 | MsG0480022788.01 | 0.800698 | 1.275548e-48 | 5.978410e-46 |
MsG0380017461.01 | MsG0480022788.01 | 0.801491 | 8.782393e-49 | 4.199813e-46 |
MsG0380017498.01 | MsG0480022788.01 | 0.809650 | 1.704131e-50 | 1.006239e-47 |
MsG0380017589.01 | MsG0480022788.01 | 0.801406 | 9.140185e-49 | 4.361469e-46 |
MsG0380017996.01 | MsG0480022788.01 | 0.804879 | 1.747819e-49 | 9.115892e-47 |
MsG0380018075.01 | MsG0480022788.01 | 0.830350 | 3.085132e-55 | 3.242312e-52 |
MsG0480018163.01 | MsG0480022788.01 | 0.833322 | 5.701309e-56 | 6.543371e-53 |
MsG0480018183.01 | MsG0480022788.01 | 0.800954 | 1.131163e-48 | 5.336596e-46 |
MsG0480018251.01 | MsG0480022788.01 | 0.805353 | 1.391062e-49 | 7.343293e-47 |
MsG0480018313.01 | MsG0480022788.01 | 0.800243 | 1.579405e-48 | 7.317744e-46 |
MsG0280006712.01 | MsG0480022788.01 | 0.808586 | 2.879231e-50 | 1.652621e-47 |
MsG0280007164.01 | MsG0480022788.01 | 0.816068 | 6.690563e-52 | 4.693287e-49 |
MsG0280007955.01 | MsG0480022788.01 | 0.830048 | 3.657510e-55 | 3.810101e-52 |
MsG0280008076.01 | MsG0480022788.01 | 0.810692 | 1.015756e-50 | 6.164631e-48 |
MsG0280009421.01 | MsG0480022788.01 | 0.800347 | 1.504070e-48 | 6.987340e-46 |
MsG0280009748.01 | MsG0480022788.01 | 0.806356 | 8.560879e-50 | 4.636759e-47 |
MsG0280009794.01 | MsG0480022788.01 | 0.827402 | 1.595582e-54 | 1.538944e-51 |
MsG0280009983.01 | MsG0480022788.01 | 0.811295 | 7.518200e-51 | 4.636089e-48 |
MsG0280009984.01 | MsG0480022788.01 | 0.801114 | 1.048925e-48 | 4.968652e-46 |
MsG0280010366.01 | MsG0480022788.01 | 0.824843 | 6.480926e-54 | 5.808112e-51 |
MsG0280010443.01 | MsG0480022788.01 | 0.807463 | 4.992111e-50 | 2.782455e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480022788.01.T01 | MTR_4g096780 | 77.273 | 132 | 28 | 2 | 2 | 131 | 64 | 195 | 6.89e-64 | 196 |
MsG0480022788.01.T01 | MTR_4g096780 | 77.273 | 132 | 28 | 2 | 2 | 131 | 64 | 195 | 6.69e-63 | 196 |
MsG0480022788.01.T01 | MTR_3g046760 | 52.000 | 125 | 57 | 3 | 5 | 127 | 72 | 195 | 4.66e-32 | 114 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480022788.01.T01 | AT4G18260 | 52.033 | 123 | 57 | 2 | 5 | 125 | 73 | 195 | 2.27e-37 | 129 |
MsG0480022788.01.T01 | AT2G30890 | 43.307 | 127 | 68 | 4 | 5 | 128 | 65 | 190 | 1.69e-25 | 97.8 |
Find 60 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATTTCCATGTTGCTTTC+AGG | 0.154424 | 4:-76673857 | MsG0480022788.01.T01:CDS |
TGATCCAGGTTCTGCTTTAT+TGG | 0.158743 | 4:+76673899 | None:intergenic |
CATTACATGGATTGCTTCTA+TGG | 0.160282 | 4:-76673970 | MsG0480022788.01.T01:exon |
TATACTTGTGCAAGCTTTCA+TGG | 0.238586 | 4:-76673272 | MsG0480022788.01.T01:CDS |
TTATCTCTTCCAAGACAAAT+TGG | 0.245963 | 4:-76672474 | MsG0480022788.01.T01:three_prime_UTR |
AGATTAGGTCTAGCACTTTA+TGG | 0.256796 | 4:-76673298 | MsG0480022788.01.T01:CDS |
ACCTTAAAAGCACATTGTTT+TGG | 0.310937 | 4:-76672538 | MsG0480022788.01.T01:CDS |
TACTTTGCACACTGGATACT+AGG | 0.348731 | 4:-76672625 | MsG0480022788.01.T01:CDS |
GATAATAACCATCAAAGATT+AGG | 0.351198 | 4:-76673313 | MsG0480022788.01.T01:CDS |
GTGCTAGACCTAATCTTTGA+TGG | 0.351725 | 4:+76673305 | None:intergenic |
CTTGGGATACTTACAATTAG+AGG | 0.356264 | 4:-76673924 | MsG0480022788.01.T01:CDS |
AGTGGATTCTTAATTCCTCT+TGG | 0.361355 | 4:-76673942 | MsG0480022788.01.T01:CDS |
CACTCAATGCACAACCTTGA+AGG | 0.378313 | 4:-76674287 | MsG0480022788.01.T01:five_prime_UTR |
GTTGCCTTTGAGGAATATCT+TGG | 0.401541 | 4:+76672394 | None:intergenic |
GAAACAGTGGGAGAAGCTTA+AGG | 0.403693 | 4:-76674429 | MsG0480022788.01.T01:five_prime_UTR |
TTTATCTTTCCACATGCAAT+TGG | 0.411092 | 4:+76672352 | None:intergenic |
AAACTGATTCACTTCCTTCA+AGG | 0.412265 | 4:+76674273 | None:intergenic |
ATTCTGCTCCTTCTTGATCC+AGG | 0.424374 | 4:+76673885 | None:intergenic |
GTGGATTCTTAATTCCTCTT+GGG | 0.428824 | 4:-76673941 | MsG0480022788.01.T01:CDS |
CTCATATTTCCAATTTGTCT+TGG | 0.431499 | 4:+76672465 | None:intergenic |
GTGCTTCTTGCCACAGTTGG+AGG | 0.435870 | 4:-76673367 | MsG0480022788.01.T01:CDS |
TCAGTGCTTCTTGCCACAGT+TGG | 0.449586 | 4:-76673370 | MsG0480022788.01.T01:CDS |
CTCAAAGGCAACAAATCAAA+AGG | 0.457265 | 4:-76672383 | MsG0480022788.01.T01:three_prime_UTR |
GGGACAATAGTTTCCCTTGT+GGG | 0.457433 | 4:-76672604 | MsG0480022788.01.T01:CDS |
TGTTGCTGTGTTATTGTGCT+AGG | 0.468581 | 4:-76674376 | MsG0480022788.01.T01:five_prime_UTR |
AAACAGTGGGAGAAGCTTAA+GGG | 0.476795 | 4:-76674428 | MsG0480022788.01.T01:five_prime_UTR |
AGAAAGCAAGGAGTGATTGA+AGG | 0.481400 | 4:-76672444 | MsG0480022788.01.T01:three_prime_UTR |
ATTACATGGATTGCTTCTAT+GGG | 0.484467 | 4:-76673969 | MsG0480022788.01.T01:exon |
AAGGTTGTGCATTGAGTGAA+AGG | 0.493149 | 4:+76674292 | None:intergenic |
TGTTTGACTAATCACGTGAC+GGG | 0.511839 | 4:-76672315 | MsG0480022788.01.T01:three_prime_UTR |
CTTTGTTATTTGTGTTCCTG+TGG | 0.515228 | 4:+76674245 | None:intergenic |
TTTGCAGGGGAAAGAAAGAG+AGG | 0.525844 | 4:-76672656 | MsG0480022788.01.T01:intron |
TGTCAAATCTCACTAGATCA+TGG | 0.529019 | 4:+76672277 | None:intergenic |
ATTGCTTCTATGGGGTTCAG+TGG | 0.532766 | 4:-76673960 | MsG0480022788.01.T01:exon |
TGAATCAGTTTAACAGCCAC+AGG | 0.550927 | 4:-76674261 | MsG0480022788.01.T01:five_prime_UTR |
ATTGGAAATATGAGAAAGCA+AGG | 0.553151 | 4:-76672456 | MsG0480022788.01.T01:three_prime_UTR |
CAAAACTCAGAGAGAAACAG+TGG | 0.556146 | 4:-76674442 | MsG0480022788.01.T01:five_prime_UTR |
TTGGGATACTTACAATTAGA+GGG | 0.558079 | 4:-76673923 | MsG0480022788.01.T01:CDS |
CACAAATAACAAAGTTCACA+AGG | 0.567973 | 4:-76674236 | MsG0480022788.01.T01:intron |
TTGTTTGACTAATCACGTGA+CGG | 0.576165 | 4:-76672316 | MsG0480022788.01.T01:three_prime_UTR |
GCATCAGATATAGCATTACA+TGG | 0.577510 | 4:-76673983 | MsG0480022788.01.T01:five_prime_UTR |
GGGTCCAATAAAGCAGAACC+TGG | 0.582617 | 4:-76673903 | MsG0480022788.01.T01:CDS |
AGTTATTGTACTTTGCACAC+TGG | 0.589961 | 4:-76672633 | MsG0480022788.01.T01:CDS |
GCAACACAAAACTACGTACA+AGG | 0.590228 | 4:+76674393 | None:intergenic |
ACTTTGCACACTGGATACTA+GGG | 0.590322 | 4:-76672624 | MsG0480022788.01.T01:CDS |
GGACAATAGTTTCCCTTGTG+GGG | 0.599488 | 4:-76672603 | MsG0480022788.01.T01:CDS |
GGGGATCATCAACATTTACA+CGG | 0.604072 | 4:-76672584 | MsG0480022788.01.T01:CDS |
TGTGGAAAGATAAATGCACT+TGG | 0.614446 | 4:-76672343 | MsG0480022788.01.T01:three_prime_UTR |
AAGCAGAACCTGGATCAAGA+AGG | 0.617858 | 4:-76673893 | MsG0480022788.01.T01:CDS |
CTTACCAAGATATTCCTCAA+AGG | 0.620966 | 4:-76672398 | MsG0480022788.01.T01:three_prime_UTR |
AATGACATAGCCTCCAACTG+TGG | 0.625481 | 4:+76673357 | None:intergenic |
TACATGACCTGAAAGCAACA+TGG | 0.625657 | 4:+76673850 | None:intergenic |
GGGATCATCAACATTTACAC+GGG | 0.632584 | 4:-76672583 | MsG0480022788.01.T01:CDS |
TTACATGGATTGCTTCTATG+GGG | 0.637280 | 4:-76673968 | MsG0480022788.01.T01:exon |
AAAACTCAGAGAGAAACAGT+GGG | 0.651101 | 4:-76674441 | MsG0480022788.01.T01:five_prime_UTR |
GAGATGTTGCCAATTGCATG+TGG | 0.663285 | 4:-76672361 | MsG0480022788.01.T01:three_prime_UTR |
CTAATTGTAAGTATCCCAAG+AGG | 0.664951 | 4:+76673927 | None:intergenic |
AAATGTTGATGATCCCCACA+AGG | 0.667752 | 4:+76672590 | None:intergenic |
AGGGACAATAGTTTCCCTTG+TGG | 0.671953 | 4:-76672605 | MsG0480022788.01.T01:CDS |
AATGTTGATGATCCCCACAA+GGG | 0.682717 | 4:+76672591 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAACAACAATTTTAAAT+TGG | - | Chr4:76672580-76672599 | MsG0480022788.01.T01:CDS | 10.0% |
!! | TAAATATTAATGAATTAACC+TGG | + | Chr4:76673490-76673509 | None:intergenic | 15.0% |
!!! | TTTTAAATTGGTGAATAAAT+CGG | - | Chr4:76672592-76672611 | MsG0480022788.01.T01:CDS | 15.0% |
!!! | TTTTAATCAACAAGAATTAA+TGG | + | Chr4:76672905-76672924 | None:intergenic | 15.0% |
!! | AATATTCTAATTGAATTTGC+AGG | - | Chr4:76674052-76674071 | MsG0480022788.01.T01:intron | 20.0% |
!! | ATAGTGTTAAATTATCTTAG+TGG | - | Chr4:76672975-76672994 | MsG0480022788.01.T01:intron | 20.0% |
!! | ATATTAAAACATTACAGTGT+AGG | + | Chr4:76674017-76674036 | None:intergenic | 20.0% |
!! | ATATTCTAATTGAATTTGCA+GGG | - | Chr4:76674053-76674072 | MsG0480022788.01.T01:intron | 20.0% |
!! | CAGAAATACAGAAATTAAAA+TGG | + | Chr4:76673566-76673585 | None:intergenic | 20.0% |
!!! | ACACTGTAATGTTTTAATAT+AGG | - | Chr4:76674017-76674036 | MsG0480022788.01.T01:intron | 20.0% |
!!! | CACTGTAATGTTTTAATATA+GGG | - | Chr4:76674018-76674037 | MsG0480022788.01.T01:intron | 20.0% |
!!! | TAGTTTCTCATAATTTTCAA+CGG | - | Chr4:76673714-76673733 | MsG0480022788.01.T01:intron | 20.0% |
!!! | TCATTTTATTAACCACAAAT+CGG | + | Chr4:76672646-76672665 | None:intergenic | 20.0% |
!!! | TTTTTTAGCCTAAAAATACA+AGG | + | Chr4:76673686-76673705 | None:intergenic | 20.0% |
! | ATATTAATGAATTAACCTGG+AGG | + | Chr4:76673487-76673506 | None:intergenic | 25.0% |
! | CCTATACATAGATATTTGAA+AGG | - | Chr4:76673840-76673859 | MsG0480022788.01.T01:intron | 25.0% |
! | CCTTTCAAATATCTATGTAT+AGG | + | Chr4:76673843-76673862 | None:intergenic | 25.0% |
! | GATAATAACCATCAAAGATT+AGG | - | Chr4:76673410-76673429 | MsG0480022788.01.T01:intron | 25.0% |
! | TATTCTAATTGAATTTGCAG+GGG | - | Chr4:76674054-76674073 | MsG0480022788.01.T01:intron | 25.0% |
! | TGTGATGACTAATAAAAAAC+AGG | + | Chr4:76673655-76673674 | None:intergenic | 25.0% |
! | TTTGTTAAAAACTTGACAAG+TGG | - | Chr4:76672951-76672970 | MsG0480022788.01.T01:intron | 25.0% |
!! | AATTGTTGCCTTGTATTTTT+AGG | - | Chr4:76673675-76673694 | MsG0480022788.01.T01:intron | 25.0% |
!! | AGTTTCTCATAATTTTCAAC+GGG | - | Chr4:76673715-76673734 | MsG0480022788.01.T01:intron | 25.0% |
!! | TTTTTACAATGAGGATAGAA+AGG | + | Chr4:76673304-76673323 | None:intergenic | 25.0% |
!!! | ACTTGCTTTAACTTTTATAG+TGG | - | Chr4:76673075-76673094 | MsG0480022788.01.T01:intron | 25.0% |
!!! | AGGGAAAACTTTAGAATATT+TGG | - | Chr4:76673603-76673622 | MsG0480022788.01.T01:intron | 25.0% |
!!! | GGATTTATTAGCTTTATATG+AGG | + | Chr4:76673515-76673534 | None:intergenic | 25.0% |
!!! | GTAGTTTTTTTTAAGCTCTT+TGG | - | Chr4:76673247-76673266 | MsG0480022788.01.T01:intron | 25.0% |
!!! | GTTAGACTATTTTTACAATG+AGG | + | Chr4:76673313-76673332 | None:intergenic | 25.0% |
ATGAGGATAGAAAGGTAAAA+AGG | + | Chr4:76673296-76673315 | None:intergenic | 30.0% | |
ATTGGAAATATGAGAAAGCA+AGG | - | Chr4:76674267-76674286 | MsG0480022788.01.T01:five_prime_UTR | 30.0% | |
CACAAATAACAAAGTTCACA+AGG | - | Chr4:76672487-76672506 | MsG0480022788.01.T01:exon | 30.0% | |
CCAGTACGTACTTATAATAA+AGG | + | Chr4:76672691-76672710 | None:intergenic | 30.0% | |
CCTTTATTATAAGTACGTAC+TGG | - | Chr4:76672688-76672707 | MsG0480022788.01.T01:intron | 30.0% | |
CTCATATTTCCAATTTGTCT+TGG | + | Chr4:76674261-76674280 | None:intergenic | 30.0% | |
TACTATGAAGTTTGTGTTGT+TGG | + | Chr4:76673536-76673555 | None:intergenic | 30.0% | |
TTATCTCTTCCAAGACAAAT+TGG | - | Chr4:76674249-76674268 | MsG0480022788.01.T01:five_prime_UTR | 30.0% | |
TTATTATAAGTACGTACTGG+TGG | - | Chr4:76672691-76672710 | MsG0480022788.01.T01:intron | 30.0% | |
TTGGGATACTTACAATTAGA+GGG | - | Chr4:76672800-76672819 | MsG0480022788.01.T01:intron | 30.0% | |
TTTATCTTTCCACATGCAAT+TGG | + | Chr4:76674374-76674393 | None:intergenic | 30.0% | |
! | ATTACATGGATTGCTTCTAT+GGG | - | Chr4:76672754-76672773 | MsG0480022788.01.T01:intron | 30.0% |
! | TCCAAAACAATGTGCTTTTA+AGG | + | Chr4:76674189-76674208 | None:intergenic | 30.0% |
!! | ACCTTAAAAGCACATTGTTT+TGG | - | Chr4:76674185-76674204 | MsG0480022788.01.T01:intron | 30.0% |
!! | TTGGACTATACTTTTTACAG+TGG | - | Chr4:76674204-76674223 | MsG0480022788.01.T01:intron | 30.0% |
AAAACTCAGAGAGAAACAGT+GGG | - | Chr4:76672282-76672301 | MsG0480022788.01.T01:three_prime_UTR | 35.0% | |
AGATTAGGTCTAGCACTTTA+TGG | - | Chr4:76673425-76673444 | MsG0480022788.01.T01:intron | 35.0% | |
AGTCCTCAACTTTCATACAA+AGG | + | Chr4:76673800-76673819 | None:intergenic | 35.0% | |
AGTTATTGTACTTTGCACAC+TGG | - | Chr4:76674090-76674109 | MsG0480022788.01.T01:intron | 35.0% | |
CTAATTGTAAGTATCCCAAG+AGG | + | Chr4:76672799-76672818 | None:intergenic | 35.0% | |
CTCAAAGGCAACAAATCAAA+AGG | - | Chr4:76674340-76674359 | MsG0480022788.01.T01:five_prime_UTR | 35.0% | |
CTTACCAAGATATTCCTCAA+AGG | - | Chr4:76674325-76674344 | MsG0480022788.01.T01:five_prime_UTR | 35.0% | |
CTTGGGATACTTACAATTAG+AGG | - | Chr4:76672799-76672818 | MsG0480022788.01.T01:intron | 35.0% | |
GAACTATAAGTCGTCTACAT+TGG | - | Chr4:76673216-76673235 | MsG0480022788.01.T01:intron | 35.0% | |
GCATCAGATATAGCATTACA+TGG | - | Chr4:76672740-76672759 | MsG0480022788.01.T01:intron | 35.0% | |
GTCCTCAACTTTCATACAAA+GGG | + | Chr4:76673799-76673818 | None:intergenic | 35.0% | |
GTGGATTCTTAATTCCTCTT+GGG | - | Chr4:76672782-76672801 | MsG0480022788.01.T01:intron | 35.0% | |
TATACTTGTGCAAGCTTTCA+TGG | - | Chr4:76673451-76673470 | MsG0480022788.01.T01:intron | 35.0% | |
TGTCAAATCTCACTAGATCA+TGG | + | Chr4:76674449-76674468 | None:intergenic | 35.0% | |
TGTGGAAAGATAAATGCACT+TGG | - | Chr4:76674380-76674399 | MsG0480022788.01.T01:five_prime_UTR | 35.0% | |
TTGTTTGACTAATCACGTGA+CGG | - | Chr4:76674407-76674426 | MsG0480022788.01.T01:five_prime_UTR | 35.0% | |
! | AAACTGATTCACTTCCTTCA+AGG | + | Chr4:76672453-76672472 | None:intergenic | 35.0% |
! | AGCTCCTCATATTTTCATGT+TGG | - | Chr4:76673762-76673781 | MsG0480022788.01.T01:intron | 35.0% |
! | AGTGGATTCTTAATTCCTCT+TGG | - | Chr4:76672781-76672800 | MsG0480022788.01.T01:intron | 35.0% |
! | CATTACATGGATTGCTTCTA+TGG | - | Chr4:76672753-76672772 | MsG0480022788.01.T01:intron | 35.0% |
! | CTCCTCATATTTTCATGTTG+GGG | - | Chr4:76673764-76673783 | MsG0480022788.01.T01:intron | 35.0% |
! | GCTCCTCATATTTTCATGTT+GGG | - | Chr4:76673763-76673782 | MsG0480022788.01.T01:intron | 35.0% |
! | TTACATGGATTGCTTCTATG+GGG | - | Chr4:76672755-76672774 | MsG0480022788.01.T01:intron | 35.0% |
!! | ACAGTGGAAGTCTTTTTCAT+TGG | - | Chr4:76674220-76674239 | MsG0480022788.01.T01:intron | 35.0% |
!! | ATCAATTAGTGACCGATTTG+TGG | - | Chr4:76672631-76672650 | MsG0480022788.01.T01:CDS | 35.0% |
!! | CTTTGTTATTTGTGTTCCTG+TGG | + | Chr4:76672481-76672500 | None:intergenic | 35.0% |
!! | TCTATTTCCATGTTGCTTTC+AGG | - | Chr4:76672866-76672885 | MsG0480022788.01.T01:intron | 35.0% |
!!! | AAATGACCAGTTTTTAGCAG+TGG | - | Chr4:76672660-76672679 | MsG0480022788.01.T01:intron | 35.0% |
!!! | CTTTTGATTTGTTGCCTTTG+AGG | + | Chr4:76674342-76674361 | None:intergenic | 35.0% |
AAACAGTGGGAGAAGCTTAA+GGG | - | Chr4:76672295-76672314 | MsG0480022788.01.T01:three_prime_UTR | 40.0% | |
AAGGTTGTGCATTGAGTGAA+AGG | + | Chr4:76672434-76672453 | None:intergenic | 40.0% | |
ACTTTGCACACTGGATACTA+GGG | - | Chr4:76674099-76674118 | MsG0480022788.01.T01:intron | 40.0% | |
AGAAAGCAAGGAGTGATTGA+AGG | - | Chr4:76674279-76674298 | MsG0480022788.01.T01:five_prime_UTR | 40.0% | |
CAAAACTCAGAGAGAAACAG+TGG | - | Chr4:76672281-76672300 | MsG0480022788.01.T01:three_prime_UTR | 40.0% | |
GAATGACCACTGCTAAAAAC+TGG | + | Chr4:76672669-76672688 | None:intergenic | 40.0% | |
GCAACACAAAACTACGTACA+AGG | + | Chr4:76672333-76672352 | None:intergenic | 40.0% | |
GCTAACTATCTAGCAGCTAT+TGG | - | Chr4:76672557-76672576 | MsG0480022788.01.T01:CDS | 40.0% | |
GGGATCATCAACATTTACAC+GGG | - | Chr4:76674140-76674159 | MsG0480022788.01.T01:intron | 40.0% | |
GGGGATCATCAACATTTACA+CGG | - | Chr4:76674139-76674158 | MsG0480022788.01.T01:intron | 40.0% | |
GTCCCCAACATGAAAATATG+AGG | + | Chr4:76673769-76673788 | None:intergenic | 40.0% | |
GTCCCTTTGTATGAAAGTTG+AGG | - | Chr4:76673794-76673813 | MsG0480022788.01.T01:intron | 40.0% | |
GTGCTAGACCTAATCTTTGA+TGG | + | Chr4:76673421-76673440 | None:intergenic | 40.0% | |
TACATGACCTGAAAGCAACA+TGG | + | Chr4:76672876-76672895 | None:intergenic | 40.0% | |
TACTTTGCACACTGGATACT+AGG | - | Chr4:76674098-76674117 | MsG0480022788.01.T01:intron | 40.0% | |
TGAATCAGTTTAACAGCCAC+AGG | - | Chr4:76672462-76672481 | MsG0480022788.01.T01:three_prime_UTR | 40.0% | |
TGATCCAGGTTCTGCTTTAT+TGG | + | Chr4:76672827-76672846 | None:intergenic | 40.0% | |
TGCATGCATGTTAATCAGCA+GGG | - | Chr4:76673584-76673603 | MsG0480022788.01.T01:intron | 40.0% | |
TGCTAGATAGTTAGCAGCAT+TGG | + | Chr4:76672552-76672571 | None:intergenic | 40.0% | |
TGTTTGACTAATCACGTGAC+GGG | - | Chr4:76674408-76674427 | MsG0480022788.01.T01:five_prime_UTR | 40.0% | |
! | GTTGCCTTTGAGGAATATCT+TGG | + | Chr4:76674332-76674351 | None:intergenic | 40.0% |
! | TGTTGCTGTGTTATTGTGCT+AGG | - | Chr4:76672347-76672366 | MsG0480022788.01.T01:three_prime_UTR | 40.0% |
!! | AAATGTTGATGATCCCCACA+AGG | + | Chr4:76674136-76674155 | None:intergenic | 40.0% |
!! | AATGTTGATGATCCCCACAA+GGG | + | Chr4:76674135-76674154 | None:intergenic | 40.0% |
AAGCAGAACCTGGATCAAGA+AGG | - | Chr4:76672830-76672849 | MsG0480022788.01.T01:intron | 45.0% | |
AATGACATAGCCTCCAACTG+TGG | + | Chr4:76673369-76673388 | None:intergenic | 45.0% | |
AGGGACAATAGTTTCCCTTG+TGG | - | Chr4:76674118-76674137 | MsG0480022788.01.T01:intron | 45.0% | |
ATTCTGCTCCTTCTTGATCC+AGG | + | Chr4:76672841-76672860 | None:intergenic | 45.0% | |
ATTGCTTCTATGGGGTTCAG+TGG | - | Chr4:76672763-76672782 | MsG0480022788.01.T01:intron | 45.0% | |
CACTCAATGCACAACCTTGA+AGG | - | Chr4:76672436-76672455 | MsG0480022788.01.T01:three_prime_UTR | 45.0% | |
CTGCATGCATGTTAATCAGC+AGG | - | Chr4:76673583-76673602 | MsG0480022788.01.T01:intron | 45.0% | |
GAAACAGTGGGAGAAGCTTA+AGG | - | Chr4:76672294-76672313 | MsG0480022788.01.T01:three_prime_UTR | 45.0% | |
GAGATGTTGCCAATTGCATG+TGG | - | Chr4:76674362-76674381 | MsG0480022788.01.T01:five_prime_UTR | 45.0% | |
GGACAATAGTTTCCCTTGTG+GGG | - | Chr4:76674120-76674139 | MsG0480022788.01.T01:intron | 45.0% | |
GGGACAATAGTTTCCCTTGT+GGG | - | Chr4:76674119-76674138 | MsG0480022788.01.T01:intron | 45.0% | |
TTTGCAGGGGAAAGAAAGAG+AGG | - | Chr4:76674067-76674086 | MsG0480022788.01.T01:intron | 45.0% | |
! | CGTACTGGTGGTAATATAGC+AGG | - | Chr4:76672703-76672722 | MsG0480022788.01.T01:intron | 45.0% |
!! | CATGGATTTTTCAGACCTCC+AGG | - | Chr4:76673469-76673488 | MsG0480022788.01.T01:intron | 45.0% |
!! | AAAAAATAAAAAATAAACAT+TGG | + | Chr4:76673106-76673125 | None:intergenic | 5.0% |
GGGTCCAATAAAGCAGAACC+TGG | - | Chr4:76672820-76672839 | MsG0480022788.01.T01:intron | 50.0% | |
TCAGTGCTTCTTGCCACAGT+TGG | - | Chr4:76673353-76673372 | MsG0480022788.01.T01:CDS | 50.0% | |
GTGCTTCTTGCCACAGTTGG+AGG | - | Chr4:76673356-76673375 | MsG0480022788.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 76672258 | 76674487 | 76672258 | ID=MsG0480022788.01;Name=MsG0480022788.01 |
Chr4 | mRNA | 76672258 | 76674487 | 76672258 | ID=MsG0480022788.01.T01;Parent=MsG0480022788.01;Name=MsG0480022788.01.T01;_AED=0.02;_eAED=0.02;_QI=298|0.66|0.75|1|0|0|4|240|144 |
Chr4 | exon | 76672258 | 76672671 | 76672258 | ID=MsG0480022788.01.T01:exon:8598;Parent=MsG0480022788.01.T01 |
Chr4 | exon | 76673255 | 76673398 | 76673255 | ID=MsG0480022788.01.T01:exon:8597;Parent=MsG0480022788.01.T01 |
Chr4 | exon | 76673857 | 76674020 | 76673857 | ID=MsG0480022788.01.T01:exon:8596;Parent=MsG0480022788.01.T01 |
Chr4 | exon | 76674237 | 76674487 | 76674237 | ID=MsG0480022788.01.T01:exon:8595;Parent=MsG0480022788.01.T01 |
Chr4 | five_prime_UTR | 76674237 | 76674487 | 76674237 | ID=MsG0480022788.01.T01:five_prime_utr;Parent=MsG0480022788.01.T01 |
Chr4 | five_prime_UTR | 76673974 | 76674020 | 76673974 | ID=MsG0480022788.01.T01:five_prime_utr;Parent=MsG0480022788.01.T01 |
Chr4 | CDS | 76673857 | 76673973 | 76673857 | ID=MsG0480022788.01.T01:cds;Parent=MsG0480022788.01.T01 |
Chr4 | CDS | 76673255 | 76673398 | 76673255 | ID=MsG0480022788.01.T01:cds;Parent=MsG0480022788.01.T01 |
Chr4 | CDS | 76672498 | 76672671 | 76672498 | ID=MsG0480022788.01.T01:cds;Parent=MsG0480022788.01.T01 |
Chr4 | three_prime_UTR | 76672258 | 76672497 | 76672258 | ID=MsG0480022788.01.T01:three_prime_utr;Parent=MsG0480022788.01.T01 |
Gene Sequence |
Protein sequence |