Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037158.01.T01 | XP_013447993.2 | 99.038 | 312 | 3 | 0 | 1 | 312 | 19 | 330 | 0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037158.01.T01 | P49730 | 85.897 | 312 | 43 | 1 | 1 | 312 | 19 | 329 | 0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037158.01.T01 | A0A396GVD1 | 99.038 | 312 | 3 | 0 | 1 | 312 | 19 | 330 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048775.01 | MsG0780037158.01 | 0.820961 | 5.201167e-53 | 4.176091e-50 |
| MsG0080048781.01 | MsG0780037158.01 | 0.823063 | 1.694755e-53 | 1.443952e-50 |
| MsG0180002218.01 | MsG0780037158.01 | 0.800364 | 1.492364e-48 | 6.935930e-46 |
| MsG0180002397.01 | MsG0780037158.01 | 0.811146 | 8.100973e-51 | 4.976038e-48 |
| MsG0180002429.01 | MsG0780037158.01 | 0.819975 | 8.758311e-53 | 6.841842e-50 |
| MsG0180003485.01 | MsG0780037158.01 | 0.835645 | 1.487635e-56 | 1.830431e-53 |
| MsG0180003658.01 | MsG0780037158.01 | 0.846283 | 2.393285e-59 | 4.098476e-56 |
| MsG0180003796.01 | MsG0780037158.01 | 0.802228 | 6.197807e-49 | 3.019746e-46 |
| MsG0180004126.01 | MsG0780037158.01 | 0.823821 | 1.126915e-53 | 9.809330e-51 |
| MsG0180006133.01 | MsG0780037158.01 | 0.820560 | 6.430659e-53 | 5.105394e-50 |
| MsG0280010579.01 | MsG0780037158.01 | 0.835523 | 1.596592e-56 | 1.957304e-53 |
| MsG0380014751.01 | MsG0780037158.01 | 0.811009 | 8.672447e-51 | 5.308557e-48 |
| MsG0680031616.01 | MsG0780037158.01 | 0.807449 | 5.026460e-50 | 2.800563e-47 |
| MsG0680032772.01 | MsG0780037158.01 | 0.810114 | 1.353949e-50 | 8.092515e-48 |
| MsG0680032773.01 | MsG0780037158.01 | 0.806164 | 9.393884e-50 | 5.063470e-47 |
| MsG0680033696.01 | MsG0780037158.01 | 0.816880 | 4.401037e-52 | 3.156584e-49 |
| MsG0480018526.01 | MsG0780037158.01 | 0.802355 | 5.836374e-49 | 2.853013e-46 |
| MsG0480018785.01 | MsG0780037158.01 | 0.837621 | 4.665950e-57 | 6.095683e-54 |
| MsG0480022559.01 | MsG0780037158.01 | 0.810331 | 1.215893e-50 | 7.308337e-48 |
| MsG0480022784.01 | MsG0780037158.01 | 0.807482 | 4.948318e-50 | 2.759261e-47 |
| MsG0480022982.01 | MsG0780037158.01 | 0.842107 | 3.163823e-58 | 4.747697e-55 |
| MsG0480022991.01 | MsG0780037158.01 | 0.835428 | 1.688131e-56 | 2.063682e-53 |
| MsG0480023194.01 | MsG0780037158.01 | 0.830633 | 2.630523e-55 | 2.787379e-52 |
| MsG0480023262.01 | MsG0780037158.01 | 0.816262 | 6.055562e-52 | 4.270479e-49 |
| MsG0480023296.01 | MsG0780037158.01 | 0.857320 | 1.769168e-62 | 4.349032e-59 |
| MsG0480023672.01 | MsG0780037158.01 | 0.821982 | 3.022394e-53 | 2.496904e-50 |
| MsG0580024787.01 | MsG0780037158.01 | 0.858599 | 7.375620e-63 | 1.892510e-59 |
| MsG0580024813.01 | MsG0780037158.01 | 0.843567 | 1.293977e-58 | 2.032863e-55 |
| MsG0580025093.01 | MsG0780037158.01 | 0.818086 | 2.354865e-52 | 1.745568e-49 |
| MsG0580025177.01 | MsG0780037158.01 | 0.841209 | 5.460455e-58 | 7.965423e-55 |
| MsG0580025775.01 | MsG0780037158.01 | 0.817664 | 2.932163e-52 | 2.148655e-49 |
| MsG0380015394.01 | MsG0780037158.01 | 0.815494 | 8.982238e-52 | 6.202643e-49 |
| MsG0380016091.01 | MsG0780037158.01 | 0.819908 | 9.073105e-53 | 7.074317e-50 |
| MsG0380016217.01 | MsG0780037158.01 | 0.800935 | 1.141381e-48 | 5.382154e-46 |
| MsG0380017164.01 | MsG0780037158.01 | 0.830437 | 2.937636e-55 | 3.094875e-52 |
| MsG0380017361.01 | MsG0780037158.01 | 0.832952 | 7.044883e-56 | 7.996008e-53 |
| MsG0580028756.01 | MsG0780037158.01 | 0.852960 | 3.276249e-61 | 6.965201e-58 |
| MsG0580028923.01 | MsG0780037158.01 | 0.821210 | 4.556568e-53 | 3.683864e-50 |
| MsG0580029123.01 | MsG0780037158.01 | 0.806973 | 6.340117e-50 | 3.488950e-47 |
| MsG0580029261.01 | MsG0780037158.01 | 0.835651 | 1.482343e-56 | 1.824234e-53 |
| MsG0280006540.01 | MsG0780037158.01 | 0.855962 | 4.435289e-62 | 1.042027e-58 |
| MsG0280006563.01 | MsG0780037158.01 | 0.840829 | 6.869624e-58 | 9.905171e-55 |
| MsG0280007359.01 | MsG0780037158.01 | 0.842762 | 2.120773e-58 | 3.247967e-55 |
| MsG0280009752.01 | MsG0780037158.01 | 0.804106 | 2.533507e-49 | 1.295183e-46 |
| MsG0680035878.01 | MsG0780037158.01 | 0.841255 | 5.308649e-58 | 7.755229e-55 |
| MsG0780037158.01 | MsG0780037741.01 | 0.810876 | 9.266845e-51 | 5.652006e-48 |
| MsG0780037158.01 | MsG0780038445.01 | 0.833189 | 6.151076e-56 | 7.031539e-53 |
| MsG0780037158.01 | MsG0780039861.01 | 0.819457 | 1.149745e-52 | 8.852834e-50 |
| MsG0780037158.01 | MsG0780040365.01 | 0.802565 | 5.281775e-49 | 2.595577e-46 |
| MsG0780037158.01 | MsG0780040620.01 | 0.814774 | 1.298039e-51 | 8.788737e-49 |
| MsG0780037158.01 | MsG0780041141.01 | 0.831756 | 1.393728e-55 | 1.526962e-52 |
| MsG0780037158.01 | MsG0780041143.01 | 0.843082 | 1.743388e-58 | 2.696868e-55 |
| MsG0780037158.01 | MsG0780041340.01 | 0.842815 | 2.052987e-58 | 3.149531e-55 |
| MsG0780037158.01 | MsG0780041359.01 | 0.800208 | 1.605017e-48 | 7.429860e-46 |
| MsG0780037158.01 | MsG0880044835.01 | 0.900000 | 1.134207e-77 | 1.437616e-73 |
| MsG0780037158.01 | MsG0880045612.01 | 0.807451 | 5.022505e-50 | 2.798485e-47 |
| MsG0780037158.01 | MsG0880046646.01 | 0.863121 | 3.120322e-64 | 9.356224e-61 |
| MsG0780037158.01 | MsG0880046885.01 | 0.863560 | 2.281232e-64 | 6.944587e-61 |
| MsG0780037158.01 | MsG0880047226.01 | 0.809155 | 2.175533e-50 | 1.267745e-47 |
| MsG0780037158.01 | MsG0880047447.01 | 0.803930 | 2.756179e-49 | 1.402762e-46 |
| MsG0780037158.01 | MsG0880047640.01 | 0.821415 | 4.086447e-53 | 3.322465e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037158.01.T01 | MTR_0268s0080 | 98.718 | 312 | 4 | 0 | 1 | 312 | 19 | 330 | 0.0 | 638 |
| MsG0780037158.01.T01 | MTR_1g050472 | 98.077 | 312 | 6 | 0 | 1 | 312 | 19 | 330 | 0.0 | 634 |
| MsG0780037158.01.T01 | MTR_7g029110 | 97.756 | 312 | 7 | 0 | 1 | 312 | 19 | 330 | 0.0 | 631 |
| MsG0780037158.01.T01 | MTR_8g469010 | 92.628 | 312 | 18 | 1 | 1 | 312 | 19 | 325 | 0.0 | 598 |
| MsG0780037158.01.T01 | MTR_4g117370 | 77.564 | 312 | 69 | 1 | 1 | 312 | 31 | 341 | 0.0 | 516 |
| MsG0780037158.01.T01 | MTR_6g005270 | 67.442 | 43 | 14 | 0 | 247 | 289 | 25 | 67 | 9.84e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037158.01.T01 | AT3G27060 | 84.076 | 314 | 48 | 2 | 1 | 312 | 19 | 332 | 0.0 | 525 |
| MsG0780037158.01.T01 | AT3G23580 | 77.564 | 312 | 69 | 1 | 1 | 312 | 31 | 341 | 0.0 | 506 |
Find 52 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTACATTTCCCAGATTT+TGG | 0.151339 | 7:+20792367 | None:intergenic |
| ATTTGTTGCTGATAGATTAT+TGG | 0.266016 | 7:-20791658 | MsG0780037158.01.T01:CDS |
| AATTCCATGTATCGCGAAAA+AGG | 0.267050 | 7:-20792033 | MsG0780037158.01.T01:CDS |
| CAATCCAATACCCCAAAATC+TGG | 0.320986 | 7:-20792379 | MsG0780037158.01.T01:CDS |
| GTTGCATTTGCTTGTGTAGA+AGG | 0.323501 | 7:-20791957 | MsG0780037158.01.T01:CDS |
| TGCAATCTGGAAACCGTAAA+AGG | 0.337326 | 7:+20792151 | None:intergenic |
| ATTTCTTTGAGAAGCGCGTT+GGG | 0.337568 | 7:-20791554 | MsG0780037158.01.T01:CDS |
| TTTGTTGCTGATAGATTATT+GGG | 0.363819 | 7:-20791657 | MsG0780037158.01.T01:CDS |
| CGAAATAAGCTCGTTTGAAA+AGG | 0.374698 | 7:+20791866 | None:intergenic |
| AATCGCTTATATACGTTTCA+AGG | 0.387103 | 7:+20792093 | None:intergenic |
| ATGTTCAGAATCCGTTTGAT+TGG | 0.390491 | 7:-20791608 | MsG0780037158.01.T01:CDS |
| ACCGTAAAAGGCACGTGCTT+CGG | 0.395979 | 7:+20792163 | None:intergenic |
| GCGCTTCCTTGCGCGTTGGT+TGG | 0.401864 | 7:-20791714 | MsG0780037158.01.T01:CDS |
| AGGCTGATTGGGCAATGAAA+TGG | 0.412010 | 7:-20792013 | MsG0780037158.01.T01:CDS |
| TGCGCGTTGGTTGGAATGAA+TGG | 0.417042 | 7:-20791705 | MsG0780037158.01.T01:CDS |
| TCAGAATCCGTTTGATTGGA+TGG | 0.443597 | 7:-20791604 | MsG0780037158.01.T01:CDS |
| TCCGTCTGAGGCGGCGAAGA+AGG | 0.447235 | 7:+20792235 | None:intergenic |
| GCCTTCTTCGCCGCCTCAGA+CGG | 0.453049 | 7:-20792236 | MsG0780037158.01.T01:CDS |
| CTGTTATGAATAGCTTGAAT+GGG | 0.453833 | 7:-20791515 | MsG0780037158.01.T01:CDS |
| TCTGTTATGAATAGCTTGAA+TGG | 0.458759 | 7:-20791516 | MsG0780037158.01.T01:CDS |
| CGACGCGCTTCCTTGCGCGT+TGG | 0.462960 | 7:-20791718 | MsG0780037158.01.T01:CDS |
| GGCGGTCCAGAATGAGGCTT+CGG | 0.476778 | 7:+20792340 | None:intergenic |
| ATGGAATTGATTTCGCTTCA+AGG | 0.479094 | 7:-20791585 | MsG0780037158.01.T01:CDS |
| ATCAATTCCATCCAATCAAA+CGG | 0.480364 | 7:+20791597 | None:intergenic |
| GCAATGCAGTTGAAATTGAA+AGG | 0.492366 | 7:-20791752 | MsG0780037158.01.T01:CDS |
| GGAGGAAAGATCGACTTCTT+CGG | 0.499480 | 7:+20792319 | None:intergenic |
| GGGTGAACTTGGTTGTGAAA+AGG | 0.510958 | 7:-20791637 | MsG0780037158.01.T01:CDS |
| TCGTTTGAAAAGGTTAATCC+TGG | 0.512613 | 7:+20791876 | None:intergenic |
| GATAGATTATTGGGTGAACT+TGG | 0.513434 | 7:-20791648 | MsG0780037158.01.T01:CDS |
| GTTGTTCCAGTGCTTGAGAT+CGG | 0.515525 | 7:+20792298 | None:intergenic |
| AATTTCTTTGAGAAGCGCGT+TGG | 0.523856 | 7:-20791555 | MsG0780037158.01.T01:CDS |
| TTCTTCGGCGGTCCAGAATG+AGG | 0.524296 | 7:+20792334 | None:intergenic |
| TTCGAGGACAATTCCGTCTG+AGG | 0.536756 | 7:+20792223 | None:intergenic |
| TTTCCTCCGATCTCAAGCAC+TGG | 0.537267 | 7:-20792304 | MsG0780037158.01.T01:CDS |
| CAATGCAGTTGAAATTGAAA+GGG | 0.547072 | 7:-20791751 | MsG0780037158.01.T01:CDS |
| TGGAATTGATTTCGCTTCAA+GGG | 0.551257 | 7:-20791584 | MsG0780037158.01.T01:CDS |
| CGAGGACGTGTGAGATGAAG+TGG | 0.551534 | 7:+20792258 | None:intergenic |
| GAGCTTATTTCGCGTGACGA+AGG | 0.555351 | 7:-20791855 | MsG0780037158.01.T01:CDS |
| AATCCAATACCCCAAAATCT+GGG | 0.556684 | 7:-20792378 | MsG0780037158.01.T01:CDS |
| ATTGTCCTCGAAAATCTCGC+TGG | 0.568595 | 7:-20792212 | MsG0780037158.01.T01:CDS |
| CACTGGAACAACCTCACAGA+CGG | 0.586656 | 7:-20792287 | MsG0780037158.01.T01:CDS |
| TTCATTCCAACCAACGCGCA+AGG | 0.590197 | 7:+20791708 | None:intergenic |
| TTTCTTTGAGAAGCGCGTTG+GGG | 0.598671 | 7:-20791553 | MsG0780037158.01.T01:CDS |
| GAAGTGAATACATCTCAGAA+TGG | 0.599540 | 7:+20792117 | None:intergenic |
| GAGGACAATTCCGTCTGAGG+CGG | 0.603534 | 7:+20792226 | None:intergenic |
| ATGAATAGCTTGAATGGGAA+TGG | 0.603815 | 7:-20791510 | MsG0780037158.01.T01:CDS |
| CTGAGGCGGCGAAGAAGGCG+AGG | 0.610767 | 7:+20792240 | None:intergenic |
| ACTAACTTCAGAGCGTGTGA+AGG | 0.618034 | 7:-20791784 | MsG0780037158.01.T01:CDS |
| GTTCCAGTGCTTGAGATCGG+AGG | 0.623496 | 7:+20792301 | None:intergenic |
| GCGTTGGTTGGAATGAATGG+TGG | 0.654887 | 7:-20791702 | MsG0780037158.01.T01:CDS |
| GGAAAGATCGACTTCTTCGG+CGG | 0.687608 | 7:+20792322 | None:intergenic |
| AGTGGCGTTCGCCGTCTGTG+AGG | 0.694180 | 7:+20792276 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTGTTGCTGATAGATTATT+GGG | - | Chr7:20792199-20792218 | MsG0780037158.01.T01:CDS | 25.0% |
| !! | ATTTGTTGCTGATAGATTAT+TGG | - | Chr7:20792198-20792217 | MsG0780037158.01.T01:CDS | 25.0% |
| AATCGCTTATATACGTTTCA+AGG | + | Chr7:20791766-20791785 | None:intergenic | 30.0% | |
| ATCAATTCCATCCAATCAAA+CGG | + | Chr7:20792262-20792281 | None:intergenic | 30.0% | |
| CAATGCAGTTGAAATTGAAA+GGG | - | Chr7:20792105-20792124 | MsG0780037158.01.T01:CDS | 30.0% | |
| CTGTTATGAATAGCTTGAAT+GGG | - | Chr7:20792341-20792360 | MsG0780037158.01.T01:CDS | 30.0% | |
| TCTGTTATGAATAGCTTGAA+TGG | - | Chr7:20792340-20792359 | MsG0780037158.01.T01:CDS | 30.0% | |
| ! | TTGTACATTTCCCAGATTTT+GGG | + | Chr7:20791491-20791510 | None:intergenic | 30.0% |
| ! | TTTGTACATTTCCCAGATTT+TGG | + | Chr7:20791492-20791511 | None:intergenic | 30.0% |
| !!! | ATTTTCTGGTTGAAAAAACG+CGG | - | Chr7:20791950-20791969 | MsG0780037158.01.T01:CDS | 30.0% |
| !!! | TGCTGATTTTTGCTTTAGTT+TGG | - | Chr7:20792372-20792391 | MsG0780037158.01.T01:CDS | 30.0% |
| AATCCAATACCCCAAAATCT+GGG | - | Chr7:20791478-20791497 | MsG0780037158.01.T01:CDS | 35.0% | |
| AATTCCATGTATCGCGAAAA+AGG | - | Chr7:20791823-20791842 | MsG0780037158.01.T01:CDS | 35.0% | |
| ATGAATAGCTTGAATGGGAA+TGG | - | Chr7:20792346-20792365 | MsG0780037158.01.T01:CDS | 35.0% | |
| ATGTTCAGAATCCGTTTGAT+TGG | - | Chr7:20792248-20792267 | MsG0780037158.01.T01:CDS | 35.0% | |
| CGAAATAAGCTCGTTTGAAA+AGG | + | Chr7:20791993-20792012 | None:intergenic | 35.0% | |
| GAAGTGAATACATCTCAGAA+TGG | + | Chr7:20791742-20791761 | None:intergenic | 35.0% | |
| GATAGATTATTGGGTGAACT+TGG | - | Chr7:20792208-20792227 | MsG0780037158.01.T01:CDS | 35.0% | |
| GCAATGCAGTTGAAATTGAA+AGG | - | Chr7:20792104-20792123 | MsG0780037158.01.T01:CDS | 35.0% | |
| TCGTTTGAAAAGGTTAATCC+TGG | + | Chr7:20791983-20792002 | None:intergenic | 35.0% | |
| ! | ATGGAATTGATTTCGCTTCA+AGG | - | Chr7:20792271-20792290 | MsG0780037158.01.T01:CDS | 35.0% |
| ! | GGATGTTTTCAATTGCAATC+TGG | + | Chr7:20791721-20791740 | None:intergenic | 35.0% |
| ! | GTAGAAGGAATTTTCTTCTC+TGG | - | Chr7:20791914-20791933 | MsG0780037158.01.T01:CDS | 35.0% |
| ! | TGGAATTGATTTCGCTTCAA+GGG | - | Chr7:20792272-20792291 | MsG0780037158.01.T01:CDS | 35.0% |
| ! | TGTACATTTCCCAGATTTTG+GGG | + | Chr7:20791490-20791509 | None:intergenic | 35.0% |
| !!! | AGATTTTGGGGTATTGGATT+GGG | + | Chr7:20791478-20791497 | None:intergenic | 35.0% |
| AAAAAACGCGGTTTAATGCC+AGG | - | Chr7:20791962-20791981 | MsG0780037158.01.T01:CDS | 40.0% | |
| CAATCCAATACCCCAAAATC+TGG | - | Chr7:20791477-20791496 | MsG0780037158.01.T01:CDS | 40.0% | |
| GTTGCATTTGCTTGTGTAGA+AGG | - | Chr7:20791899-20791918 | MsG0780037158.01.T01:CDS | 40.0% | |
| TATCGCGAAAAAGGCTGATT+GGG | - | Chr7:20791832-20791851 | MsG0780037158.01.T01:CDS | 40.0% | |
| TCAGAATCCGTTTGATTGGA+TGG | - | Chr7:20792252-20792271 | MsG0780037158.01.T01:CDS | 40.0% | |
| TGCAATCTGGAAACCGTAAA+AGG | + | Chr7:20791708-20791727 | None:intergenic | 40.0% | |
| ! | AATTTCTTTGAGAAGCGCGT+TGG | - | Chr7:20792301-20792320 | MsG0780037158.01.T01:CDS | 40.0% |
| ! | ATTTCTTTGAGAAGCGCGTT+GGG | - | Chr7:20792302-20792321 | MsG0780037158.01.T01:CDS | 40.0% |
| !!! | CAGATTTTGGGGTATTGGAT+TGG | + | Chr7:20791479-20791498 | None:intergenic | 40.0% |
| !!! | TTTCCCAGATTTTGGGGTAT+TGG | + | Chr7:20791484-20791503 | None:intergenic | 40.0% |
| AAAAAGCCGAAGCCTCATTC+TGG | - | Chr7:20791510-20791529 | MsG0780037158.01.T01:CDS | 45.0% | |
| ACTAACTTCAGAGCGTGTGA+AGG | - | Chr7:20792072-20792091 | MsG0780037158.01.T01:CDS | 45.0% | |
| AGGCTGATTGGGCAATGAAA+TGG | - | Chr7:20791843-20791862 | MsG0780037158.01.T01:CDS | 45.0% | |
| ATTGTCCTCGAAAATCTCGC+TGG | - | Chr7:20791644-20791663 | MsG0780037158.01.T01:CDS | 45.0% | |
| GGGTGAACTTGGTTGTGAAA+AGG | - | Chr7:20792219-20792238 | MsG0780037158.01.T01:CDS | 45.0% | |
| GTATCGCGAAAAAGGCTGAT+TGG | - | Chr7:20791831-20791850 | MsG0780037158.01.T01:CDS | 45.0% | |
| GTTGTTCCAGTGCTTGAGAT+CGG | + | Chr7:20791561-20791580 | None:intergenic | 45.0% | |
| ! | ATCTTCCAGCGAGATTTTCG+AGG | + | Chr7:20791652-20791671 | None:intergenic | 45.0% |
| ! | GGAGGAAAGATCGACTTCTT+CGG | + | Chr7:20791540-20791559 | None:intergenic | 45.0% |
| ! | TTTCTTTGAGAAGCGCGTTG+GGG | - | Chr7:20792303-20792322 | MsG0780037158.01.T01:CDS | 45.0% |
| !! | TCAGCCTTTTTCGCGATACA+TGG | + | Chr7:20791830-20791849 | None:intergenic | 45.0% |
| CACTGGAACAACCTCACAGA+CGG | - | Chr7:20791569-20791588 | MsG0780037158.01.T01:CDS | 50.0% | |
| GAGCTTATTTCGCGTGACGA+AGG | - | Chr7:20792001-20792020 | MsG0780037158.01.T01:CDS | 50.0% | |
| TTCATTCCAACCAACGCGCA+AGG | + | Chr7:20792151-20792170 | None:intergenic | 50.0% | |
| TTCGAGGACAATTCCGTCTG+AGG | + | Chr7:20791636-20791655 | None:intergenic | 50.0% | |
| TTTCCTCCGATCTCAAGCAC+TGG | - | Chr7:20791552-20791571 | MsG0780037158.01.T01:CDS | 50.0% | |
| ! | ACCGTAAAAGGCACGTGCTT+CGG | + | Chr7:20791696-20791715 | None:intergenic | 50.0% |
| ! | GAAGCTTCTGCGCGATTTTC+TGG | - | Chr7:20791936-20791955 | MsG0780037158.01.T01:CDS | 50.0% |
| ! | GGAAAGATCGACTTCTTCGG+CGG | + | Chr7:20791537-20791556 | None:intergenic | 50.0% |
| ! | TCCGAAGCACGTGCCTTTTA+CGG | - | Chr7:20791692-20791711 | MsG0780037158.01.T01:CDS | 50.0% |
| !! | GCGTTGGTTGGAATGAATGG+TGG | - | Chr7:20792154-20792173 | MsG0780037158.01.T01:CDS | 50.0% |
| !! | TGCGCGTTGGTTGGAATGAA+TGG | - | Chr7:20792151-20792170 | MsG0780037158.01.T01:CDS | 50.0% |
| CGAGGACGTGTGAGATGAAG+TGG | + | Chr7:20791601-20791620 | None:intergenic | 55.0% | |
| GAGGACAATTCCGTCTGAGG+CGG | + | Chr7:20791633-20791652 | None:intergenic | 55.0% | |
| GTTCCAGTGCTTGAGATCGG+AGG | + | Chr7:20791558-20791577 | None:intergenic | 55.0% | |
| TTCTTCGGCGGTCCAGAATG+AGG | + | Chr7:20791525-20791544 | None:intergenic | 55.0% | |
| GGCGGTCCAGAATGAGGCTT+CGG | + | Chr7:20791519-20791538 | None:intergenic | 60.0% | |
| AGTGGCGTTCGCCGTCTGTG+AGG | + | Chr7:20791583-20791602 | None:intergenic | 65.0% | |
| GCCTTCTTCGCCGCCTCAGA+CGG | - | Chr7:20791620-20791639 | MsG0780037158.01.T01:CDS | 65.0% | |
| ! | GCGCTTCCTTGCGCGTTGGT+TGG | - | Chr7:20792142-20792161 | MsG0780037158.01.T01:CDS | 65.0% |
| ! | TCCGTCTGAGGCGGCGAAGA+AGG | + | Chr7:20791624-20791643 | None:intergenic | 65.0% |
| CGACGCGCTTCCTTGCGCGT+TGG | - | Chr7:20792138-20792157 | MsG0780037158.01.T01:CDS | 70.0% | |
| CTGAGGCGGCGAAGAAGGCG+AGG | + | Chr7:20791619-20791638 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 20791470 | 20792408 | 20791470 | ID=MsG0780037158.01;Name=MsG0780037158.01 |
| Chr7 | mRNA | 20791470 | 20792408 | 20791470 | ID=MsG0780037158.01.T01;Parent=MsG0780037158.01;Name=MsG0780037158.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|312 |
| Chr7 | exon | 20791470 | 20792408 | 20791470 | ID=MsG0780037158.01.T01:exon:5142;Parent=MsG0780037158.01.T01 |
| Chr7 | CDS | 20791470 | 20792408 | 20791470 | ID=MsG0780037158.01.T01:cds;Parent=MsG0780037158.01.T01 |
| Gene Sequence |
| Protein sequence |
