AlfalfaGEDB | MsG0880042059.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042059.01

KEGG: -
GO: GO:0030001 GO:0046872
PFAM: PF00403

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042059.01.T01	XP_013444042.1	88.506	261	16	2	16	274	17	265	1.64E-136	395

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042059.01.T01	Q9SHQ8	51.479	169	70	2	26	184	13	179	1.49E-46	160

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042059.01.T01	G7ZWQ0	88.506	261	16	2	16	274	17	265	7.84e-137	395

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001117.01	MsG0880042059.01	0.810486	1.125713e-50	6.794080e-48
MsG0180001294.01	MsG0880042059.01	0.805498	1.296916e-49	6.871768e-47
MsG0180002273.01	MsG0880042059.01	0.833867	4.166207e-56	4.860402e-53
MsG0180003948.01	MsG0880042059.01	0.812291	4.565040e-51	2.891181e-48
MsG0180004060.01	MsG0880042059.01	0.814953	1.184668e-51	8.060086e-49
MsG0180004388.01	MsG0880042059.01	0.801613	8.291363e-49	3.977016e-46
MsG0180004949.01	MsG0880042059.01	0.815020	1.144632e-51	7.802115e-49
MsG0180006023.01	MsG0880042059.01	0.807351	5.272979e-50	2.930416e-47
MsG0180006235.01	MsG0880042059.01	0.804973	1.670316e-49	8.732191e-47
MsG0780040488.01	MsG0880042059.01	0.803638	3.169090e-49	1.600727e-46
MsG0780040947.01	MsG0880042059.01	0.814927	1.200598e-51	8.162420e-49
MsG0780041376.01	MsG0880042059.01	0.808058	3.731415e-50	2.112256e-47
MsG0780041469.01	MsG0880042059.01	0.806062	9.873031e-50	5.307759e-47
MsG0780041754.01	MsG0880042059.01	0.810696	1.013940e-50	6.154258e-48
MsG0880041969.01	MsG0880042059.01	0.800831	1.198296e-48	5.635549e-46
MsG0880042059.01	MsG0880042543.01	0.831835	1.332641e-55	1.463431e-52
MsG0880042059.01	MsG0880043547.01	0.800693	1.278529e-48	5.991680e-46
MsG0880042059.01	MsG0880044075.01	0.818346	2.055977e-52	1.535191e-49
MsG0880042059.01	MsG0880044237.01	0.819689	1.017667e-52	7.886213e-50
MsG0880042059.01	MsG0880044510.01	0.826086	3.289562e-54	3.054155e-51
MsG0880042059.01	MsG0880045583.01	0.802595	5.206385e-49	2.560628e-46
MsG0880042059.01	MsG0880046669.01	0.812682	3.748488e-51	2.398787e-48
MsG0880042059.01	MsG0880046762.01	0.844553	7.039990e-59	1.140730e-55
MsG0880042059.01	MsG0880047191.01	0.821514	3.877953e-53	3.161487e-50
MsG0880042059.01	MsG0880047590.01	0.800625	1.320227e-48	6.176535e-46
MsG0280010614.01	MsG0880042059.01	0.833558	4.977891e-56	5.753356e-53
MsG0280011070.01	MsG0880042059.01	0.813274	2.781468e-51	1.808268e-48
MsG0380014118.01	MsG0880042059.01	0.834262	3.318300e-56	3.917301e-53
MsG0380014365.01	MsG0880042059.01	0.820859	5.488747e-53	4.394319e-50
MsG0380014573.01	MsG0880042059.01	0.812511	4.085587e-51	2.602795e-48
MsG0680031133.01	MsG0880042059.01	0.823328	1.469760e-53	1.261518e-50
MsG0680031651.01	MsG0880042059.01	0.828132	1.065777e-54	1.049951e-51
MsG0680035573.01	MsG0880042059.01	0.803869	2.837460e-49	1.441852e-46
MsG0480018970.01	MsG0880042059.01	0.824691	7.037619e-54	6.280106e-51
MsG0480020242.01	MsG0880042059.01	0.805943	1.045943e-49	5.605937e-47
MsG0480020445.01	MsG0880042059.01	0.818866	1.567127e-52	1.187061e-49
MsG0480020591.01	MsG0880042059.01	0.818127	2.305481e-52	1.710976e-49
MsG0480022480.01	MsG0880042059.01	0.817734	2.827553e-52	2.076042e-49
MsG0480023421.01	MsG0880042059.01	0.818009	2.450884e-52	1.812991e-49
MsG0380016227.01	MsG0880042059.01	0.805848	1.095135e-49	5.855405e-47
MsG0380016765.01	MsG0880042059.01	0.802400	5.713314e-49	2.796027e-46
MsG0380017140.01	MsG0880042059.01	0.803665	3.127854e-49	1.580962e-46
MsG0380017998.01	MsG0880042059.01	0.815221	1.032846e-51	7.078370e-49
MsG0580027129.01	MsG0880042059.01	0.804486	2.111290e-49	1.089888e-46
MsG0580029189.01	MsG0880042059.01	0.832667	8.296112e-56	9.336450e-53
MsG0580030235.01	MsG0880042059.01	0.800908	1.155676e-48	5.445998e-46
MsG0680030436.01	MsG0880042059.01	0.816199	6.253864e-52	4.402702e-49
MsG0680030684.01	MsG0880042059.01	0.801451	8.948402e-49	4.274860e-46
MsG0680030685.01	MsG0880042059.01	0.824322	8.592703e-54	7.585461e-51
MsG0280007609.01	MsG0880042059.01	0.834724	2.540589e-56	3.040350e-53
MsG0280008615.01	MsG0880042059.01	0.818891	1.547130e-52	1.172739e-49
MsG0280009514.01	MsG0880042059.01	0.816270	6.031001e-52	4.254014e-49
MsG0280010389.01	MsG0880042059.01	0.854283	1.364395e-61	3.031943e-58
MsG0280010459.01	MsG0880042059.01	0.802616	5.156748e-49	2.537503e-46
MsG0780037094.01	MsG0880042059.01	0.806981	6.317039e-50	3.476959e-47
MsG0780037515.01	MsG0880042059.01	0.801360	9.341380e-49	4.452402e-46
MsG0780038495.01	MsG0880042059.01	0.804713	1.892657e-49	9.828347e-47
MsG0780038937.01	MsG0880042059.01	0.845006	5.314554e-59	8.735212e-56

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042059.01.T01	MTR_8g010540	88.506	261	16	2	16	274	17	265	1.99e-140	395
MsG0880042059.01.T01	MTR_3g435930	31.855	248	128	5	29	273	27	236	1.01e-29	112
MsG0880042059.01.T01	MTR_3g093020	30.120	249	168	4	30	274	38	284	3.90e-25	101
MsG0880042059.01.T01	MTR_8g096700	31.365	271	154	6	31	273	54	320	5.75e-25	101
MsG0880042059.01.T01	MTR_2g026685	35.857	251	135	3	31	273	36	268	3.67e-24	98.6
MsG0880042059.01.T01	MTR_2g026685	35.857	251	135	3	31	273	37	269	3.74e-24	98.6
MsG0880042059.01.T01	MTR_2g026685	36.179	246	131	3	36	273	1	228	1.76e-23	95.9
MsG0880042059.01.T01	MTR_4g057765	29.344	259	167	4	29	273	67	323	6.27e-22	93.6
MsG0880042059.01.T01	MTR_1g063210	27.108	332	175	7	7	273	3	332	1.03e-21	93.2
MsG0880042059.01.T01	MTR_3g099030	31.873	251	141	8	31	273	37	265	5.47e-20	87.0
MsG0880042059.01.T01	MTR_3g099040	28.309	272	159	5	31	273	37	301	6.27e-18	82.0
MsG0880042059.01.T01	MTR_5g069180	25.974	154	112	1	30	183	55	206	6.80e-17	79.3
MsG0880042059.01.T01	MTR_0041s0140	27.442	215	121	3	16	204	3	208	1.69e-16	77.4
MsG0880042059.01.T01	MTR_7g101930	27.442	215	121	3	16	204	3	208	3.73e-16	77.8
MsG0880042059.01.T01	MTR_2g095480	30.675	163	100	3	30	183	67	225	3.24e-14	72.0
MsG0880042059.01.T01	MTR_4g006650	31.852	135	81	3	31	158	170	300	5.10e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042059.01.T01	AT1G29000	51.479	169	70	2	26	184	13	179	1.52e-47	160
MsG0880042059.01.T01	AT1G29000	51.479	169	70	2	26	184	13	179	1.52e-47	160
MsG0880042059.01.T01	AT5G50740	32.171	258	155	5	31	273	30	282	2.87e-30	115
MsG0880042059.01.T01	AT5G50740	32.171	258	155	5	31	273	30	282	2.87e-30	115
MsG0880042059.01.T01	AT5G50740	31.818	264	148	5	31	273	37	289	6.67e-30	114
MsG0880042059.01.T01	AT3G02960	29.044	272	151	6	5	273	13	245	1.21e-24	99.4
MsG0880042059.01.T01	AT5G24580	25.940	266	170	4	31	274	59	319	3.69e-21	91.3
MsG0880042059.01.T01	AT5G24580	25.940	266	170	4	31	274	59	319	3.69e-21	91.3
MsG0880042059.01.T01	AT5G24580	25.940	266	170	4	31	274	58	318	3.83e-21	91.3
MsG0880042059.01.T01	AT5G60800	28.897	263	164	4	28	273	26	282	4.41e-20	87.8
MsG0880042059.01.T01	AT5G60800	28.897	263	164	4	28	273	26	282	1.05e-19	87.0
MsG0880042059.01.T01	AT5G63530	31.928	166	99	4	31	185	61	223	4.30e-19	85.9
MsG0880042059.01.T01	AT5G63530	31.928	166	99	4	31	185	76	238	4.72e-19	85.9
MsG0880042059.01.T01	AT5G24580	25.188	266	169	5	31	274	59	316	4.55e-18	82.8
MsG0880042059.01.T01	AT5G03380	27.273	220	120	2	7	186	3	222	7.28e-18	82.8
MsG0880042059.01.T01	AT5G50740	34.711	121	72	2	31	144	30	150	1.10e-15	73.2
MsG0880042059.01.T01	AT2G36950	25.826	333	157	8	31	273	53	385	1.92e-15	75.9
MsG0880042059.01.T01	AT5G50740	34.711	121	72	2	31	144	37	157	2.77e-15	72.4
MsG0880042059.01.T01	AT5G03380	26.804	194	102	2	33	186	2	195	7.39e-15	73.9
MsG0880042059.01.T01	AT5G24580	24.473	237	152	4	60	274	1	232	8.71e-14	69.3

Find 46 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCCATAAAAGAACATAAAA+AGG	0.239075	8:-3261130	MsG0880042059.01.T01:CDS
TGAGAAGGGAAAAGATAAAA+AGG	0.255012	8:-3263674	MsG0880042059.01.T01:CDS
TAGGAAATAGAACAGGAATT+AGG	0.314724	8:+3260877	None:intergenic
CTTACATCCTTAGCTTCCTT+TGG	0.331951	8:+3263254	None:intergenic
ATCTCCTTAGGCTTCACTTT+TGG	0.342041	8:+3263296	None:intergenic
GCCTAAGGAGATTATTATTA+CGG	0.342379	8:-3263285	MsG0880042059.01.T01:CDS
ACCGTGATAGTTCGGACAAT+TGG	0.342873	8:+3261470	None:intergenic
ATGATGAATTTCTATTACTT+TGG	0.343843	8:+3260996	None:intergenic
ACGAGATGAGATTAAAATAA+AGG	0.367193	8:-3260965	MsG0880042059.01.T01:CDS
TAAACATAGTGAATAATATA+AGG	0.370125	8:+3260928	None:intergenic
AAGAAGGACAAGGGCAAAGA+AGG	0.417924	8:-3261036	MsG0880042059.01.T01:CDS
AAAGGAGAAATCAAGGCAAA+AGG	0.441442	8:-3263389	MsG0880042059.01.T01:CDS
GCTCAAAGTCTAATAGTTGA+AGG	0.463896	8:-3261219	MsG0880042059.01.T01:CDS
TAGACTTTGAGCTTTCTTGT+CGG	0.464535	8:+3261230	None:intergenic
AGAAGAAAAGAAAGATGAGA+AGG	0.466453	8:-3263689	MsG0880042059.01.T01:CDS
AAGGAAGAAAAGAAAGAGAA+GGG	0.471156	8:-3261111	MsG0880042059.01.T01:CDS
TGTCAATTTCTCCACTTCAA+TGG	0.471427	8:+3261194	None:intergenic
TCCGTAATAATAATCTCCTT+AGG	0.473974	8:+3263284	None:intergenic
GAAGAAAAGAAAGATGAGAA+GGG	0.474884	8:-3263688	MsG0880042059.01.T01:CDS
AAAGGAAGAAAAGAAAGAGA+AGG	0.477998	8:-3261112	MsG0880042059.01.T01:CDS
TTCTGGCAATAAGGAATGGC+AGG	0.478136	8:-3263718	None:intergenic
AAGGAGAAATCAAGGCAAAA+GGG	0.480202	8:-3263388	MsG0880042059.01.T01:CDS
GGGCAAAGAAGAAGAAAAGA+AGG	0.482246	8:-3261052	MsG0880042059.01.T01:CDS
GAACCTTCACCGTGATAGTT+CGG	0.491514	8:+3261462	None:intergenic
TATTGAGAAAGGAGAAATCA+AGG	0.521327	8:-3263396	MsG0880042059.01.T01:CDS
CCAAAACTAGGAAATAGAAC+AGG	0.525497	8:+3260870	None:intergenic
GTAGAAATGAATATTGAGAA+AGG	0.528475	8:-3263407	MsG0880042059.01.T01:CDS
AAGCATCTCTTAACTACTCA+AGG	0.543765	8:-3263565	MsG0880042059.01.T01:intron
AAAGTAATAGAAATTCATCA+TGG	0.570530	8:-3260994	MsG0880042059.01.T01:CDS
TTCTCATCACTGAATAATTG+TGG	0.571327	8:+3260901	None:intergenic
GAAGAAGAAAAGAAGGACAA+GGG	0.572285	8:-3261045	MsG0880042059.01.T01:CDS
CTCAAAGTCTAATAGTTGAA+GGG	0.578136	8:-3261218	MsG0880042059.01.T01:CDS
AGAAGAAGAAAAGAAGGACA+AGG	0.578619	8:-3261046	MsG0880042059.01.T01:CDS
GGCAATAAGGAATGGCAGGA+GGG	0.588187	8:-3263714	None:intergenic
GCCAATTGTCCGAACTATCA+CGG	0.589016	8:-3261471	MsG0880042059.01.T01:CDS
ATCACCAAAAGTGAAGCCTA+AGG	0.590402	8:-3263300	MsG0880042059.01.T01:CDS
AAAGGAAGAAAAGAAAGACA+AGG	0.592626	8:-3261073	MsG0880042059.01.T01:CDS
AAGGAAGAAAAGAAAGACAA+GGG	0.601578	8:-3261072	MsG0880042059.01.T01:CDS
AACTTGCATTGTCAAGAATG+TGG	0.604558	8:-3263601	MsG0880042059.01.T01:CDS
AGTTGAAGGGACCATTGAAG+TGG	0.609413	8:-3261205	MsG0880042059.01.T01:CDS
ACTTGCATTGTCAAGAATGT+GGG	0.635040	8:-3263600	MsG0880042059.01.T01:CDS
TGTCCGAACTATCACGGTGA+AGG	0.635919	8:-3261465	MsG0880042059.01.T01:CDS
TGGCAATAAGGAATGGCAGG+AGG	0.640559	8:-3263715	None:intergenic
AAGAGTGCATAGAAATGCAG+AGG	0.644270	8:-3261157	MsG0880042059.01.T01:CDS
CGTAGATTAATCAAGCACAA+AGG	0.685243	8:-3261404	MsG0880042059.01.T01:intron
CATGCATTGTGACAAATGTG+AGG	0.745793	8:-3261438	MsG0880042059.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATGAAAAATTACAAAAATAA+AGG	+	Chr8:3261653-3261672	None:intergenic	10.0%
!!	AATTGTAATATAATATGAGT+TGG	+	Chr8:3261576-3261595	None:intergenic	15.0%
!!	ACTTAAAACATAAAATTTAG+TGG	-	Chr8:3261525-3261544	MsG0880042059.01.T01:intron	15.0%
!!	TAAACATAGTGAATAATATA+AGG	+	Chr8:3263654-3263673	None:intergenic	15.0%
!!!	ATCTTATATCTTATTTTCTA+TGG	-	Chr8:3262586-3262605	MsG0880042059.01.T01:intron	15.0%
!!!	ATGCTTTTTTTTTTTTTTTG+AGG	-	Chr8:3262831-3262850	MsG0880042059.01.T01:intron	15.0%
!!!	ATTTTATGTTTTAAGTGTTA+AGG	+	Chr8:3261521-3261540	None:intergenic	15.0%
!!!	CATCTTAAAACTTTAAAAAT+TGG	+	Chr8:3262814-3262833	None:intergenic	15.0%
!!!	GATTGCTTATTAAATTTTTA+CGG	+	Chr8:3262665-3262684	None:intergenic	15.0%
!!!	TAATTCTCTTAATTTTGTAA+GGG	-	Chr8:3262710-3262729	MsG0880042059.01.T01:intron	15.0%
!!!	TATTTTTTTCTTCTACTATT+TGG	-	Chr8:3262632-3262651	MsG0880042059.01.T01:intron	15.0%
!!!	TCATTGTATTTTATTTTGTA+GGG	-	Chr8:3261140-3261159	MsG0880042059.01.T01:CDS	15.0%
!!!	TGCTTTTTTTTTTTTTTTGA+GGG	-	Chr8:3262832-3262851	MsG0880042059.01.T01:intron	15.0%
!!!	TTTTATGTTTTAAGTGTTAA+GGG	+	Chr8:3261520-3261539	None:intergenic	15.0%
!!!	TTTTCTCAAATTTTAAAGAA+AGG	+	Chr8:3262941-3262960	None:intergenic	15.0%
!!	AAAGTAATAGAAATTCATCA+TGG	-	Chr8:3263585-3263604	MsG0880042059.01.T01:CDS	20.0%
!!	AAATCTTCGTATTGTATATT+TGG	+	Chr8:3262203-3262222	None:intergenic	20.0%
!!	AAATTTGACCAAATATATAC+AGG	-	Chr8:3263309-3263328	MsG0880042059.01.T01:CDS	20.0%
!!	AAGAAACTCATAAAATCATA+TGG	+	Chr8:3261069-3261088	None:intergenic	20.0%
!!	AATTGACAAGTTATCATAAT+TGG	+	Chr8:3262002-3262021	None:intergenic	20.0%
!!	AGATAATATAAAACGAGTTT+AGG	+	Chr8:3262305-3262324	None:intergenic	20.0%
!!	ATGATGAATTTCTATTACTT+TGG	+	Chr8:3263586-3263605	None:intergenic	20.0%
!!	ATTGACAAGTTATCATAATT+GGG	+	Chr8:3262001-3262020	None:intergenic	20.0%
!!	GATGAATTAACAATAATTCT+AGG	+	Chr8:3262687-3262706	None:intergenic	20.0%
!!	GGGTATAAAAAATAAATTTG+AGG	+	Chr8:3261847-3261866	None:intergenic	20.0%
!!	TGAAAATACCTGTATATATT+TGG	+	Chr8:3263320-3263339	None:intergenic	20.0%
!!	TTCCATAAAAGAACATAAAA+AGG	-	Chr8:3263449-3263468	MsG0880042059.01.T01:intron	20.0%
!!	TTTCAATAAGATTCAAAGTT+TGG	-	Chr8:3261727-3261746	MsG0880042059.01.T01:intron	20.0%
!!!	AAAAATGAGTATTGCTTTTT+AGG	-	Chr8:3261891-3261910	MsG0880042059.01.T01:intron	20.0%
!!!	AATACTCATTTTTTTATTGG+AGG	+	Chr8:3261884-3261903	None:intergenic	20.0%
!!!	AATTTTCCATTCTTAGATAA+AGG	+	Chr8:3262507-3262526	None:intergenic	20.0%
!!!	AGCAATACTCATTTTTTTAT+TGG	+	Chr8:3261887-3261906	None:intergenic	20.0%
!!!	ATAAGCTTCAAAATTTTCAA+AGG	+	Chr8:3261226-3261245	None:intergenic	20.0%
!!!	ATTATGATAACTTGTCAATT+AGG	-	Chr8:3262002-3262021	MsG0880042059.01.T01:intron	20.0%
!!!	CATTGTATTTTATTTTGTAG+GGG	-	Chr8:3261141-3261160	MsG0880042059.01.T01:CDS	20.0%
!!!	GTAATTCTCTTAATTTTGTA+AGG	-	Chr8:3262709-3262728	MsG0880042059.01.T01:intron	20.0%
!!!	GTCATTGTATTTTATTTTGT+AGG	-	Chr8:3261139-3261158	MsG0880042059.01.T01:CDS	20.0%
!!!	TAAGCTTCAAAATTTTCAAA+GGG	+	Chr8:3261225-3261244	None:intergenic	20.0%
!!!	TTAAGATTTGAGTTTGATTT+TGG	-	Chr8:3261366-3261385	MsG0880042059.01.T01:intron	20.0%
!!!	TTATTAAATTTTTACGGCTA+AGG	+	Chr8:3262659-3262678	None:intergenic	20.0%
!!!	TTCCTTTTTATGTTCTTTTA+TGG	+	Chr8:3263454-3263473	None:intergenic	20.0%
!!!	TTTATGTTTTAAGTGTTAAG+GGG	+	Chr8:3261519-3261538	None:intergenic	20.0%
!	AAAGTTAATTTCATTCATGC+AGG	+	Chr8:3263033-3263052	None:intergenic	25.0%
!	ACGAGATGAGATTAAAATAA+AGG	-	Chr8:3263614-3263633	MsG0880042059.01.T01:CDS	25.0%
!	AGACATGTAAGATTATTAAG+AGG	+	Chr8:3262173-3262192	None:intergenic	25.0%
!	AGATATAAGATCAAACACTA+AGG	+	Chr8:3262577-3262596	None:intergenic	25.0%
!	AGATTATTAAGAGGTCAATT+TGG	+	Chr8:3262164-3262183	None:intergenic	25.0%
!	ATTCTCAAATTTCTTGTGAA+TGG	+	Chr8:3262882-3262901	None:intergenic	25.0%
!	ATTTAGATCTATTGAAAAGC+AGG	+	Chr8:3262416-3262435	None:intergenic	25.0%
!	CACATCAAACTTAATTAACA+TGG	+	Chr8:3263286-3263305	None:intergenic	25.0%
!	GTAGAAATGAATATTGAGAA+AGG	-	Chr8:3261172-3261191	MsG0880042059.01.T01:CDS	25.0%
!	TTGACAAGTTATCATAATTG+GGG	+	Chr8:3262000-3262019	None:intergenic	25.0%
!	TTTAGATCTATTGAAAAGCA+GGG	+	Chr8:3262415-3262434	None:intergenic	25.0%
!!	ATTATCTAGAGTAGATAATG+TGG	+	Chr8:3262136-3262155	None:intergenic	25.0%
!!!	ATACGTTTTGATTTTATCAC+TGG	-	Chr8:3262344-3262363	MsG0880042059.01.T01:intron	25.0%
	AAAGGAAGAAAAGAAAGACA+AGG	-	Chr8:3263506-3263525	MsG0880042059.01.T01:intron	30.0%
	AAAGGAAGAAAAGAAAGAGA+AGG	-	Chr8:3263467-3263486	MsG0880042059.01.T01:intron	30.0%
	AACACACCTTTATCTAAGAA+TGG	-	Chr8:3262498-3262517	MsG0880042059.01.T01:intron	30.0%
	AAGGAAGAAAAGAAAGACAA+GGG	-	Chr8:3263507-3263526	MsG0880042059.01.T01:intron	30.0%
	AAGGAAGAAAAGAAAGAGAA+GGG	-	Chr8:3263468-3263487	MsG0880042059.01.T01:intron	30.0%
	AAGTATAAAGCATGTCGAAT+AGG	+	Chr8:3261690-3261709	None:intergenic	30.0%
	AGAAGAAAAGAAAGATGAGA+AGG	-	Chr8:3260890-3260909	MsG0880042059.01.T01:CDS	30.0%
	CTCAAAGTCTAATAGTTGAA+GGG	-	Chr8:3263361-3263380	MsG0880042059.01.T01:CDS	30.0%
	GAAGAAAAGAAAGATGAGAA+GGG	-	Chr8:3260891-3260910	MsG0880042059.01.T01:CDS	30.0%
	GCCTAAGGAGATTATTATTA+CGG	-	Chr8:3261294-3261313	MsG0880042059.01.T01:intron	30.0%
	TAGGAAATAGAACAGGAATT+AGG	+	Chr8:3263705-3263724	None:intergenic	30.0%
	TATTACGGATAAAAAGCCAA+AGG	-	Chr8:3261309-3261328	MsG0880042059.01.T01:intron	30.0%
	TATTGAGAAAGGAGAAATCA+AGG	-	Chr8:3261183-3261202	MsG0880042059.01.T01:CDS	30.0%
	TCCGTAATAATAATCTCCTT+AGG	+	Chr8:3261298-3261317	None:intergenic	30.0%
	TGAGAAGGGAAAAGATAAAA+AGG	-	Chr8:3260905-3260924	MsG0880042059.01.T01:CDS	30.0%
	TTCTCATCACTGAATAATTG+TGG	+	Chr8:3263681-3263700	None:intergenic	30.0%
!	CGAATGAAGAATCTTTTTGA+AGG	-	Chr8:3262273-3262292	MsG0880042059.01.T01:intron	30.0%
!	CGATTTTGTTAGAGTGAATT+AGG	+	Chr8:3261608-3261627	None:intergenic	30.0%
!	GCTTGATTAATCTACGTTTT+AGG	+	Chr8:3263171-3263190	None:intergenic	30.0%
!	TTCGTATTGTATATTTGGTG+AGG	+	Chr8:3262198-3262217	None:intergenic	30.0%
!!	ATTTGAGTTTGATTTTGGTG+TGG	-	Chr8:3261371-3261390	MsG0880042059.01.T01:intron	30.0%
!!	CAAAATCGATTTGTAAGTTC+AGG	-	Chr8:3261620-3261639	MsG0880042059.01.T01:intron	30.0%
!!!	AAGAATGCGTTTTGGAAATA+AGG	+	Chr8:3262455-3262474	None:intergenic	30.0%
!!!	AGAATGCGTTTTGGAAATAA+GGG	+	Chr8:3262454-3262473	None:intergenic	30.0%
	AAAAAACTGCAGTCGTTTCT+TGG	+	Chr8:3262546-3262565	None:intergenic	35.0%
	AAAGGAGAAATCAAGGCAAA+AGG	-	Chr8:3261190-3261209	MsG0880042059.01.T01:CDS	35.0%
	AACTTGCATTGTCAAGAATG+TGG	-	Chr8:3260978-3260997	MsG0880042059.01.T01:CDS	35.0%
	AAGCATCTCTTAACTACTCA+AGG	-	Chr8:3261014-3261033	MsG0880042059.01.T01:CDS	35.0%
	AAGCTCTTGTTCATAATCCA+AGG	-	Chr8:3262070-3262089	MsG0880042059.01.T01:intron	35.0%
	AAGGAGAAATCAAGGCAAAA+GGG	-	Chr8:3261191-3261210	MsG0880042059.01.T01:CDS	35.0%
	ACTTCCATTCCAATCATAGA+TGG	-	Chr8:3261939-3261958	MsG0880042059.01.T01:intron	35.0%
	ACTTGCATTGTCAAGAATGT+GGG	-	Chr8:3260979-3260998	MsG0880042059.01.T01:CDS	35.0%
	AGAAGAAGAAAAGAAGGACA+AGG	-	Chr8:3263533-3263552	MsG0880042059.01.T01:intron	35.0%
	CGTAGATTAATCAAGCACAA+AGG	-	Chr8:3263175-3263194	MsG0880042059.01.T01:intron	35.0%
	GAAGAAGAAAAGAAGGACAA+GGG	-	Chr8:3263534-3263553	MsG0880042059.01.T01:intron	35.0%
	GCTCAAAGTCTAATAGTTGA+AGG	-	Chr8:3263360-3263379	MsG0880042059.01.T01:CDS	35.0%
	GGGCAAAGAAGAAGAAAAAA+AGG	-	Chr8:3263488-3263507	MsG0880042059.01.T01:intron	35.0%
	TAAAAAGCCAAAGGAAGCTA+AGG	-	Chr8:3261318-3261337	MsG0880042059.01.T01:intron	35.0%
	TAGACTTTGAGCTTTCTTGT+CGG	+	Chr8:3263352-3263371	None:intergenic	35.0%
	TGCTGGAATGGAGATATTAA+GGG	+	Chr8:3261919-3261938	None:intergenic	35.0%
	TGGAGGATACTATTACTACT+GGG	+	Chr8:3261867-3261886	None:intergenic	35.0%
	TGTCAATTTCTCCACTTCAA+TGG	+	Chr8:3263388-3263407	None:intergenic	35.0%
	TTGCTGGAATGGAGATATTA+AGG	+	Chr8:3261920-3261939	None:intergenic	35.0%
	TTGGAGGATACTATTACTAC+TGG	+	Chr8:3261868-3261887	None:intergenic	35.0%
!	ACGAGATAAAGAATGCGTTT+TGG	+	Chr8:3262463-3262482	None:intergenic	35.0%
	ATCACCAAAAGTGAAGCCTA+AGG	-	Chr8:3261279-3261298	MsG0880042059.01.T01:intron	40.0%
	ATGATTGGAATGGAAGTTGC+TGG	+	Chr8:3261936-3261955	None:intergenic	40.0%
	CAATCATAGATGGCTGGAAA+AGG	-	Chr8:3261949-3261968	MsG0880042059.01.T01:intron	40.0%
	CATGCATTGTGACAAATGTG+AGG	-	Chr8:3263141-3263160	MsG0880042059.01.T01:intron	40.0%
	CTGGAATGGAGATATTAAGG+GGG	+	Chr8:3261917-3261936	None:intergenic	40.0%
	CTTACATCCTTAGCTTCCTT+TGG	+	Chr8:3261328-3261347	None:intergenic	40.0%
	GCTGGAATGGAGATATTAAG+GGG	+	Chr8:3261918-3261937	None:intergenic	40.0%
	GGATTCGAGCGACTTAATAT+GGG	-	Chr8:3261546-3261565	MsG0880042059.01.T01:intron	40.0%
	GGGCAAAGAAGAAGAAAAGA+AGG	-	Chr8:3263527-3263546	MsG0880042059.01.T01:intron	40.0%
	TGGATTCGAGCGACTTAATA+TGG	-	Chr8:3261545-3261564	MsG0880042059.01.T01:intron	40.0%
	TTATCATAATTGGGGCTGAG+AGG	+	Chr8:3261992-3262011	None:intergenic	40.0%
!	AAGAGTGCATAGAAATGCAG+AGG	-	Chr8:3263422-3263441	MsG0880042059.01.T01:intron	40.0%
!	AGAGTCTAACCCTTTTCAAC+AGG	-	Chr8:3261764-3261783	MsG0880042059.01.T01:intron	40.0%
!	ATCTCCTTAGGCTTCACTTT+TGG	+	Chr8:3261286-3261305	None:intergenic	40.0%
!	CTTTTCCAGCCATCTATGAT+TGG	+	Chr8:3261951-3261970	None:intergenic	40.0%
!	GAGTCTAACCCTTTTCAACA+GGG	-	Chr8:3261765-3261784	MsG0880042059.01.T01:intron	40.0%
	AAACTGCAGTCGTTTCTTGG+TGG	+	Chr8:3262543-3262562	None:intergenic	45.0%
	AAGAAGGACAAGGGCAAAGA+AGG	-	Chr8:3263543-3263562	MsG0880042059.01.T01:intron	45.0%
	ACCGTGATAGTTCGGACAAT+TGG	+	Chr8:3263112-3263131	None:intergenic	45.0%
	AGTTGAAGGGACCATTGAAG+TGG	-	Chr8:3263374-3263393	MsG0880042059.01.T01:CDS	45.0%
	ATCCAAGGCAACAAGAACAG+AGG	-	Chr8:3262085-3262104	MsG0880042059.01.T01:intron	45.0%
	ATGGCTGGAAAAGGACTTCT+AGG	-	Chr8:3261958-3261977	MsG0880042059.01.T01:intron	45.0%
	CCAGCCATCTATGATTGGAA+TGG	+	Chr8:3261946-3261965	None:intergenic	45.0%
	CCATTCCAATCATAGATGGC+TGG	-	Chr8:3261943-3261962	MsG0880042059.01.T01:intron	45.0%
	GAACCTTCACCGTGATAGTT+CGG	+	Chr8:3263120-3263139	None:intergenic	45.0%
	GCCAATTGTCCGAACTATCA+CGG	-	Chr8:3263108-3263127	MsG0880042059.01.T01:intron	45.0%
	GGAAAAGGACTTCTAGGCAA+CGG	-	Chr8:3261964-3261983	MsG0880042059.01.T01:intron	45.0%
	TGGAATGGAAGTTGCTGGAA+TGG	+	Chr8:3261931-3261950	None:intergenic	45.0%
	TTGCTTCAGCAAATACGCGT+AGG	-	Chr8:3262234-3262253	MsG0880042059.01.T01:intron	45.0%
!	AAATTTGAGGCCCATCCTTG+AGG	+	Chr8:3261834-3261853	None:intergenic	45.0%
!	AATTTGAGGCCCATCCTTGA+GGG	+	Chr8:3261833-3261852	None:intergenic	45.0%
!!!	AATTAACTTTAAATTAATTT+TGG	-	Chr8:3263043-3263062	MsG0880042059.01.T01:intron	5.0%
!!!	ATATATTTTTTTTTTTTTTG+AGG	-	Chr8:3261447-3261466	MsG0880042059.01.T01:CDS	5.0%
!!!	ATTAACTTTAAATTAATTTT+GGG	-	Chr8:3263044-3263063	MsG0880042059.01.T01:intron	5.0%
!!!	TATATTTTTTTTTTTTTTGA+GGG	-	Chr8:3261448-3261467	MsG0880042059.01.T01:CDS	5.0%
	CAAGGCAACAAGAACAGAGG+TGG	-	Chr8:3262088-3262107	MsG0880042059.01.T01:intron	50.0%
	CACCTCTGTTCTTGTTGCCT+TGG	+	Chr8:3262090-3262109	None:intergenic	50.0%
	GCAAACAGCTCAAACGAGCT+GGG	-	Chr8:3261804-3261823	MsG0880042059.01.T01:intron	50.0%
	TCGGCTCAGGGAATGAAAAG+AGG	+	Chr8:3262370-3262389	None:intergenic	50.0%
	TGCAAACAGCTCAAACGAGC+TGG	-	Chr8:3261803-3261822	MsG0880042059.01.T01:intron	50.0%
	TGTCCGAACTATCACGGTGA+AGG	-	Chr8:3263114-3263133	MsG0880042059.01.T01:intron	50.0%
!	ACGCGTAGGAAGTCTCGTTT+TGG	-	Chr8:3262248-3262267	MsG0880042059.01.T01:intron	50.0%
!	TTTGGTGTGGCCGTAACTCA+GGG	-	Chr8:3261384-3261403	MsG0880042059.01.T01:intron	50.0%
!!	TTTTGGTGTGGCCGTAACTC+AGG	-	Chr8:3261383-3261402	MsG0880042059.01.T01:intron	50.0%
	AGCCTCCGAATTCTCAGGGA+CGG	-	Chr8:3262389-3262408	MsG0880042059.01.T01:intron	55.0%
	AGGGACGGCCCTGTTGAAAA+GGG	+	Chr8:3261776-3261795	None:intergenic	55.0%
	CTGCAGTCGTTTCTTGGTGG+TGG	+	Chr8:3262540-3262559	None:intergenic	55.0%
	TCCCTGAGAATTCGGAGGCT+CGG	+	Chr8:3262389-3262408	None:intergenic	55.0%
	TCCTCCCTTCCCCTGAGTTA+CGG	+	Chr8:3261397-3261416	None:intergenic	55.0%
	TTGGTGTGGCCGTAACTCAG+GGG	-	Chr8:3261385-3261404	MsG0880042059.01.T01:intron	55.0%
!!	CAGTCGTTTCTTGGTGGTGG+TGG	+	Chr8:3262537-3262556	None:intergenic	55.0%
	AGAATTCGGAGGCTCGGCTC+AGG	+	Chr8:3262383-3262402	None:intergenic	60.0%
	AGCCGAGCCTCCGAATTCTC+AGG	-	Chr8:3262384-3262403	MsG0880042059.01.T01:intron	60.0%
	CAGGGACGGCCCTGTTGAAA+AGG	+	Chr8:3261777-3261796	None:intergenic	60.0%
	CAGGGCCGTCCCTGAGAATT+CGG	+	Chr8:3262397-3262416	None:intergenic	60.0%
	GAATTCGGAGGCTCGGCTCA+GGG	+	Chr8:3262382-3262401	None:intergenic	60.0%
	GAGCTGTTTGCACCCCCTCA+GGG	+	Chr8:3261795-3261814	None:intergenic	60.0%
	GCCGAGCCTCCGAATTCTCA+GGG	-	Chr8:3262385-3262404	MsG0880042059.01.T01:intron	60.0%
	GTGGCCGTAACTCAGGGGAA+GGG	-	Chr8:3261390-3261409	MsG0880042059.01.T01:intron	60.0%
	TGAGCTGTTTGCACCCCCTC+AGG	+	Chr8:3261796-3261815	None:intergenic	60.0%
	TGTGGCCGTAACTCAGGGGA+AGG	-	Chr8:3261389-3261408	MsG0880042059.01.T01:intron	60.0%
	TGTTTGCACCCCCTCAGGGA+CGG	+	Chr8:3261791-3261810	None:intergenic	60.0%
	TTCAACAGGGCCGTCCCTGA+GGG	-	Chr8:3261778-3261797	MsG0880042059.01.T01:intron	60.0%
	TTGAGGCCCATCCTTGAGGG+AGG	+	Chr8:3261830-3261849	None:intergenic	60.0%
	TTTCAACAGGGCCGTCCCTG+AGG	-	Chr8:3261777-3261796	MsG0880042059.01.T01:intron	60.0%
	AACGAGCTGGGCCTCCCTCA+AGG	-	Chr8:3261816-3261835	MsG0880042059.01.T01:intron	65.0%
	AGCTGGGCCTCCCTCAAGGA+TGG	-	Chr8:3261820-3261839	MsG0880042059.01.T01:intron	65.0%
	GCCGTAACTCAGGGGAAGGG+AGG	-	Chr8:3261393-3261412	MsG0880042059.01.T01:intron	65.0%
	GCTGGGCCTCCCTCAAGGAT+GGG	-	Chr8:3261821-3261840	MsG0880042059.01.T01:intron	65.0%
	GGCCGTCCCTGAGAATTCGG+AGG	+	Chr8:3262394-3262413	None:intergenic	65.0%
	TCAACAGGGCCGTCCCTGAG+GGG	-	Chr8:3261779-3261798	MsG0880042059.01.T01:intron	65.0%
	CAACAGGGCCGTCCCTGAGG+GGG	-	Chr8:3261780-3261799	MsG0880042059.01.T01:intron	70.0%

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	3260876	3263725	3260876	ID=MsG0880042059.01;Name=MsG0880042059.01
Chr8	mRNA	3260876	3263725	3260876	ID=MsG0880042059.01.T01;Parent=MsG0880042059.01;Name=MsG0880042059.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|0\|0\|1\|1\|1\|4\|0\|274
Chr8	exon	3263566	3263725	3263566	ID=MsG0880042059.01.T01:exon:2176;Parent=MsG0880042059.01.T01
Chr8	exon	3263259	3263440	3263259	ID=MsG0880042059.01.T01:exon:2175;Parent=MsG0880042059.01.T01
Chr8	exon	3261405	3261492	3261405	ID=MsG0880042059.01.T01:exon:2174;Parent=MsG0880042059.01.T01
Chr8	exon	3260876	3261270	3260876	ID=MsG0880042059.01.T01:exon:2173;Parent=MsG0880042059.01.T01
Chr8	CDS	3263566	3263725	3263566	ID=MsG0880042059.01.T01:cds;Parent=MsG0880042059.01.T01
Chr8	CDS	3263259	3263440	3263259	ID=MsG0880042059.01.T01:cds;Parent=MsG0880042059.01.T01
Chr8	CDS	3261405	3261492	3261405	ID=MsG0880042059.01.T01:cds;Parent=MsG0880042059.01.T01
Chr8	CDS	3260876	3261270	3260876	ID=MsG0880042059.01.T01:cds;Parent=MsG0880042059.01.T01

Gene Sequence

>MsG0880042059.01.T01

ATGGCAGGAGGGAAAGAAGAAAAGAAAGATGAGAAGGGAAAAGATAAAAAGGAAGAAAAGAAGAAAGATGAGATTGAATTGATCACTGCTATTTACAAATTGAACTTGCATTGTCAAGAATGTGGGAACAAGATCAAGAAGCATCTCTTAACTACTCAAGGGGTACAGACTGTAGAAATGAATATTGAGAAAGGAGAAATCAAGGCAAAAGGGAAATTAGACCCTTTGAAAATTTTGAAGCTTATAGAGAAGAAGAGCAATAATAAAGTTGAATTAATATCACCAAAAGTGAAGCCTAAGGAGATTATTATTACGGATAAAAAGCCAAAGGAAGCTAAGGATCCAATTGTCCGAACTATCACGGTGAAGGTTCACATGCATTGTGACAAATGTGAGGCTGACCTAAAACGTAGATTAATCAAGCACAAAGGTATTTTCAATGTTAAAACCGACAAGAAAGCTCAAAGTCTAATAGTTGAAGGGACCATTGAAGTGGAGAAATTGACATCATTTTTGAAAAAAAGAGTGCATAGAAATGCAGAGGTTATTTCCATAAAAGAACATAAAAAGGAAGAAAAGAAAGAGAAGGGCAAAGAAGAAGAAAAAAAGGAAGAAAAGAAAGACAAGGGCAAAGAAGAAGAAAAGAAGGACAAGGGCAAAGAAGGAAAGTCATCAGAATCAACCAAAGTAATAGAAATTCATCATGGAGATACACGAGATGAGATTAAAATAAAGGACAATAATAATGTTCCTTATATTATTCACTATGTTTATGCACCACAATTATTCAGTGATGAGAATCCTAATTCCTGTTCTATTTCCTAG

Protein sequence

>MsG0880042059.01.T01

MAGGKEEKKDEKGKDKKEEKKKDEIELITAIYKLNLHCQECGNKIKKHLLTTQGVQTVEMNIEKGEIKAKGKLDPLKILKLIEKKSNNKVELISPKVKPKEIIITDKKPKEAKDPIVRTITVKVHMHCDKCEADLKRRLIKHKGIFNVKTDKKAQSLIVEGTIEVEKLTSFLKKRVHRNAEVISIKEHKKEEKKEKGKEEEKKEEKKDKGKEEEKKDKGKEGKSSESTKVIEIHHGDTRDEIKIKDNNNVPYIIHYVYAPQLFSDENPNSCSIS*