AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0219880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219880 MtrunA17_Chr2g0323171 96.809 188 6 0 10 197 1 188 4.83e-135 375
Msa0219880 MtrunA17_Chr4g0023411 63.874 191 64 2 10 195 1 191 4.89e-69 209
Msa0219880 MtrunA17_Chr5g0437671 68.702 131 41 0 6 136 17 147 1.44e-45 155
Msa0219880 MtrunA17_Chr7g0243431 59.677 124 37 3 18 129 18 140 5.18e-41 145
Msa0219880 MtrunA17_Chr3g0142081 61.062 113 41 2 38 148 1 112 1.17e-34 122
Msa0219880 MtrunA17_Chr1g0189941 66.279 86 28 1 54 138 4 89 2.15e-33 117
Msa0219880 MtrunA17_Chr1g0155751 67.416 89 29 0 46 134 11 99 4.02e-33 119
Msa0219880 MtrunA17_Chr7g0257911 61.628 86 33 0 49 134 6 91 4.52e-33 119
Msa0219880 MtrunA17_Chr5g0437371 67.647 68 22 0 62 129 54 121 2.44e-26 102
Msa0219880 MtrunA17_Chr7g0221471 44.792 96 49 2 71 164 48 141 3.58e-23 91.3
Msa0219880 MtrunA17_Chr4g0044881 52.083 96 40 1 74 169 114 203 4.80e-23 92.4
Msa0219880 MtrunA17_Chr7g0221501 61.667 60 23 0 71 130 48 107 9.85e-23 90.1
Msa0219880 MtrunA17_Chr5g0425561 60.256 78 31 0 55 132 154 231 1.46e-22 93.2
Msa0219880 MtrunA17_Chr3g0137174 71.930 57 16 0 74 130 8 64 2.24e-22 89.4
Msa0219880 MtrunA17_Chr8g0375031 66.071 56 19 0 74 129 125 180 3.57e-22 89.7
Msa0219880 MtrunA17_Chr3g0115631 62.162 74 26 1 61 132 135 208 5.76e-22 91.3
Msa0219880 MtrunA17_Chr1g0170531 71.186 59 16 1 73 130 88 146 9.92e-22 88.6
Msa0219880 MtrunA17_Chr2g0295421 54.930 71 32 0 62 132 84 154 1.58e-21 89.0
Msa0219880 MtrunA17_Chr4g0044871 67.797 59 19 0 74 132 96 154 3.11e-21 87.4
Msa0219880 MtrunA17_Chr4g0002631 70.175 57 17 0 74 130 8 64 3.15e-21 86.7
Msa0219880 MtrunA17_Chr3g0134161 53.521 71 31 1 74 144 45 113 3.25e-21 85.9
Msa0219880 MtrunA17_Chr7g0232261 53.165 79 37 0 55 133 42 120 3.97e-21 87.4
Msa0219880 MtrunA17_Chr8g0382491 58.333 72 30 0 61 132 100 171 4.81e-21 88.2
Msa0219880 MtrunA17_Chr2g0334031 40.870 115 53 2 51 165 97 196 5.11e-21 89.0
Msa0219880 MtrunA17_Chr4g0044901 67.797 59 19 0 74 132 96 154 6.48e-21 86.7
Msa0219880 MtrunA17_Chr4g0055761 56.098 82 27 2 50 130 129 202 7.16e-21 87.4
Msa0219880 MtrunA17_Chr4g0044911 66.102 59 20 0 74 132 96 154 9.88e-21 86.3
Msa0219880 MtrunA17_Chr4g0055801 71.186 59 16 1 73 130 153 211 1.19e-20 87.4
Msa0219880 MtrunA17_Chr4g0055781 69.492 59 17 1 73 130 101 159 1.29e-20 86.3
Msa0219880 MtrunA17_Chr5g0399441 63.333 60 22 0 74 133 28 87 1.67e-20 84.3
Msa0219880 MtrunA17_Chr6g0486701 64.516 62 22 0 74 135 44 105 2.10e-20 85.1
Msa0219880 MtrunA17_Chr1g0195151 62.069 58 22 0 74 131 77 134 2.32e-20 86.7
Msa0219880 MtrunA17_Chr1g0153151 46.429 84 42 1 74 157 44 124 4.14e-20 83.2
Msa0219880 MtrunA17_Chr8g0335331 60.317 63 24 1 71 132 122 184 1.12e-19 82.8
Msa0219880 MtrunA17_Chr2g0324131 66.102 59 20 0 74 132 218 276 1.20e-19 85.5
Msa0219880 MtrunA17_Chr5g0401871 59.322 59 24 0 74 132 25 83 1.21e-19 82.0
Msa0219880 MtrunA17_Chr2g0331231 47.674 86 41 1 52 133 15 100 1.45e-19 82.4
Msa0219880 MtrunA17_Chr7g0265851 65.000 60 21 0 74 133 24 83 1.50e-19 82.4
Msa0219880 MtrunA17_Chr3g0140161 63.333 60 22 0 74 133 43 102 2.55e-19 81.3
Msa0219880 MtrunA17_Chr8g0390091 43.878 98 55 0 38 135 1 98 2.86e-19 82.4
Msa0219880 MtrunA17_Chr8g0344961 44.565 92 39 1 74 165 124 203 3.47e-19 84.0
Msa0219880 MtrunA17_Chr8g0340311 60.656 61 24 0 73 133 46 106 3.90e-19 81.3
Msa0219880 MtrunA17_Chr7g0275841 60.345 58 23 0 74 131 28 85 4.27e-19 80.5
Msa0219880 MtrunA17_Chr8g0335311 60.000 60 23 1 74 132 96 155 4.35e-19 80.9
Msa0219880 MtrunA17_Chr8g0383591 61.404 57 22 0 74 130 145 201 4.64e-19 83.2
Msa0219880 MtrunA17_Chr1g0196781 61.017 59 23 0 74 132 152 210 4.79e-19 83.2
Msa0219880 MtrunA17_Chr5g0396911 46.809 94 46 1 74 167 112 201 5.66e-19 82.8
Msa0219880 MtrunA17_Chr4g0055951 63.333 60 22 0 74 133 74 133 6.66e-19 81.6
Msa0219880 MtrunA17_Chr4g0046161 52.000 75 31 2 62 131 41 115 7.71e-19 78.6
Msa0219880 MtrunA17_Chr2g0283171 57.576 66 27 1 70 134 59 124 1.10e-18 79.0
Msa0219880 MtrunA17_Chr8g0346741 42.424 99 53 2 33 131 2 96 2.00e-18 79.0
Msa0219880 MtrunA17_Chr2g0333011 64.912 57 20 0 74 130 7 63 2.86e-18 78.2
Msa0219880 MtrunA17_Chr5g0432821 58.065 62 26 0 73 134 123 184 3.94e-18 80.1
Msa0219880 MtrunA17_Chr2g0316931 58.621 58 24 0 74 131 31 88 4.45e-18 78.6
Msa0219880 MtrunA17_Chr4g0003421 64.912 57 20 0 74 130 40 96 5.33e-18 79.0
Msa0219880 MtrunA17_Chr4g0063751 63.158 57 21 0 74 130 7 63 5.73e-18 78.6
Msa0219880 MtrunA17_Chr2g0282621 53.030 66 31 0 69 134 10 75 6.42e-18 77.4
Msa0219880 MtrunA17_Chr8g0334801 61.017 59 23 0 74 132 52 110 7.25e-18 78.2
Msa0219880 MtrunA17_Chr2g0283181 52.273 88 38 2 48 134 126 210 1.19e-17 79.0
Msa0219880 MtrunA17_Chr4g0062551 40.952 105 43 3 42 138 24 117 1.30e-17 75.9
Msa0219880 MtrunA17_Chr1g0150631 54.839 62 28 0 74 135 38 99 1.49e-17 77.8
Msa0219880 MtrunA17_Chr7g0250731 56.667 60 25 1 74 132 61 120 1.58e-17 77.0
Msa0219880 MtrunA17_Chr1g0150691 54.839 62 28 0 74 135 22 83 1.72e-17 77.4
Msa0219880 MtrunA17_Chr1g0184081 60.656 61 23 1 72 131 19 79 2.24e-17 75.1
Msa0219880 MtrunA17_Chr1g0186671 60.563 71 25 2 64 131 7 77 2.60e-17 74.7
Msa0219880 MtrunA17_Chr1g0196871 62.712 59 21 1 73 130 15 73 2.71e-17 73.6
Msa0219880 MtrunA17_Chr7g0250721 56.667 60 25 1 74 132 61 120 2.77e-17 76.6
Msa0219880 MtrunA17_Chr2g0301171 56.897 58 25 0 74 131 19 76 3.72e-17 75.9
Msa0219880 MtrunA17_Chr1g0150661 53.226 62 29 0 74 135 35 96 4.13e-17 76.3
Msa0219880 MtrunA17_Chr2g0282651 55.932 59 26 0 72 130 68 126 4.22e-17 76.6
Msa0219880 MtrunA17_Chr7g0250711 55.000 60 26 1 74 132 60 119 4.94e-17 75.9
Msa0219880 MtrunA17_Chr7g0252381 58.824 68 22 1 74 135 42 109 5.82e-17 77.0
Msa0219880 MtrunA17_Chr1g0150671 54.839 62 28 0 74 135 46 107 5.89e-17 77.0
Msa0219880 MtrunA17_Chr1g0186731 52.000 75 32 2 61 131 5 79 6.97e-17 73.9
Msa0219880 MtrunA17_Chr4g0062161 40.952 105 43 3 42 138 24 117 6.99e-17 75.5
Msa0219880 MtrunA17_Chr8g0367911 60.714 56 22 0 74 129 44 99 9.16e-17 76.6
Msa0219880 MtrunA17_Chr3g0099871 57.895 57 24 0 74 130 27 83 1.14e-16 75.1
Msa0219880 MtrunA17_Chr6g0486711 57.500 80 33 1 74 153 49 127 1.29e-16 75.1
Msa0219880 MtrunA17_Chr4g0026881 56.250 64 27 1 68 130 91 154 2.49e-16 74.3
Msa0219880 MtrunA17_Chr5g0412641 52.778 72 27 1 74 138 46 117 2.52e-16 75.9
Msa0219880 MtrunA17_Chr3g0126321 60.714 56 22 0 74 129 113 168 3.29e-16 75.5
Msa0219880 MtrunA17_Chr2g0301181 55.172 58 26 0 74 131 19 76 5.65e-16 73.6
Msa0219880 MtrunA17_Chr8g0335321 53.333 60 27 1 74 132 96 155 6.02e-16 72.8
Msa0219880 MtrunA17_Chr1g0158971 60.714 56 22 0 74 129 115 170 6.31e-16 74.7
Msa0219880 MtrunA17_Chr2g0301191 56.897 58 25 0 74 131 19 76 6.61e-16 72.8
Msa0219880 MtrunA17_Chr4g0057241 54.054 74 31 3 74 147 15 85 9.46e-16 71.6
Msa0219880 MtrunA17_Chr5g0438801 56.140 57 25 0 74 130 51 107 1.14e-15 73.6
Msa0219880 MtrunA17_Chr7g0261101 59.677 62 24 1 71 131 17 78 1.38e-15 70.5
Msa0219880 MtrunA17_Chr1g0184061 57.143 63 26 1 73 134 76 138 1.56e-15 72.0
Msa0219880 MtrunA17_Chr6g0473941 52.703 74 34 1 74 147 33 105 1.61e-15 71.6
Msa0219880 MtrunA17_Chr1g0184031 54.839 62 27 1 69 129 79 140 2.32e-15 71.6
Msa0219880 MtrunA17_Chr4g0026931 56.250 64 27 1 68 130 125 188 2.61e-15 72.4
Msa0219880 MtrunA17_Chr5g0438831 56.140 57 25 0 74 130 46 102 2.62e-15 72.4
Msa0219880 MtrunA17_Chr7g0261151 60.656 61 23 1 71 130 17 77 2.77e-15 69.7
Msa0219880 MtrunA17_Chr1g0184011 54.839 62 27 1 69 129 79 140 3.13e-15 71.2
Msa0219880 MtrunA17_Chr1g0183981 59.649 57 22 1 74 129 75 131 3.25e-15 71.2
Msa0219880 MtrunA17_Chr6g0473961 41.880 117 64 3 50 166 31 143 3.36e-15 70.9
Msa0219880 MtrunA17_Chr1g0203861 60.714 56 22 0 74 129 44 99 3.76e-15 70.9
Msa0219880 MtrunA17_Chr8g0387801 49.296 71 36 0 74 144 107 177 4.50e-15 72.0
Msa0219880 MtrunA17_Chr6g0473861 54.839 62 28 0 74 135 63 124 4.68e-15 71.6
Msa0219880 MtrunA17_Chr4g0066931 57.143 56 24 0 74 129 53 108 4.83e-15 72.0
Msa0219880 MtrunA17_Chr3g0131601 49.474 95 41 2 71 163 73 162 4.95e-15 71.2
Msa0219880 MtrunA17_Chr6g0461271 43.023 86 47 1 44 129 5 88 5.02e-15 72.0
Msa0219880 MtrunA17_Chr6g0473881 48.750 80 40 1 50 129 87 165 6.65e-15 71.6
Msa0219880 MtrunA17_Chr4g0017851 54.386 57 26 0 74 130 118 174 6.71e-15 71.6
Msa0219880 MtrunA17_Chr6g0473741 38.136 118 71 2 35 152 28 143 6.82e-15 70.5
Msa0219880 MtrunA17_Chr7g0253424 48.649 74 38 0 56 129 21 94 7.04e-15 70.9
Msa0219880 MtrunA17_Chr6g0473931 60.714 56 22 0 74 129 33 88 7.31e-15 69.7
Msa0219880 MtrunA17_Chr6g0473781 38.655 119 69 3 50 168 34 148 1.10e-14 69.7
Msa0219880 MtrunA17_Chr1g0184071 52.000 75 27 2 64 129 51 125 1.15e-14 68.9
Msa0219880 MtrunA17_Chr6g0473971 48.750 80 40 1 50 129 31 109 1.27e-14 70.1
Msa0219880 MtrunA17_Chr6g0473771 40.816 98 51 3 35 129 5 98 1.46e-14 67.0
Msa0219880 MtrunA17_Chr5g0396191 42.063 126 57 4 74 187 11 132 1.56e-14 68.6
Msa0219880 MtrunA17_Chr2g0286161 47.368 76 31 1 54 129 39 105 1.57e-14 70.5
Msa0219880 MtrunA17_Chr7g0261181 51.685 89 37 3 61 148 1 84 1.69e-14 67.0
Msa0219880 MtrunA17_Chr1g0146191 60.938 64 25 0 69 132 42 105 1.87e-14 69.7
Msa0219880 MtrunA17_Chr2g0321071 51.389 72 32 3 74 142 47 118 2.62e-14 68.9
Msa0219880 MtrunA17_Chr6g0473981 46.237 93 47 2 74 166 54 143 2.73e-14 68.9
Msa0219880 MtrunA17_Chr6g0474001 58.929 56 23 0 74 129 54 109 5.04e-14 68.6
Msa0219880 MtrunA17_Chr8g0350701 57.143 56 24 0 74 129 27 82 5.10e-14 68.9
Msa0219880 MtrunA17_Chr3g0083501 51.020 49 24 0 82 130 3 51 9.89e-14 63.5
Msa0219880 MtrunA17_Chr5g0396301 49.180 61 29 1 74 132 18 78 1.17e-13 65.9
Msa0219880 MtrunA17_Chr3g0136551 45.833 72 39 0 74 145 65 136 1.53e-13 67.4
Msa0219880 MtrunA17_Chr2g0297331 53.623 69 29 2 64 131 6 72 1.64e-13 64.7
Msa0219880 MtrunA17_Chr1g0170471 62.000 50 18 1 82 130 91 140 1.87e-13 65.5
Msa0219880 MtrunA17_Chr1g0186681 54.839 62 26 1 72 131 17 78 1.91e-13 64.3
Msa0219880 MtrunA17_Chr7g0225131 51.613 62 27 1 74 135 29 87 2.27e-13 63.2
Msa0219880 MtrunA17_Chr3g0129421 62.903 62 22 1 74 134 170 231 2.68e-13 67.4
Msa0219880 MtrunA17_Chr6g0453661 50.769 65 32 0 65 129 29 93 4.76e-13 66.6
Msa0219880 MtrunA17_Chr7g0217991 55.000 60 27 0 70 129 38 97 5.27e-13 66.6
Msa0219880 MtrunA17_Chr1g0149331 61.667 60 23 0 71 130 4 63 6.16e-13 64.7
Msa0219880 MtrunA17_Chr1g0183961 59.677 62 24 1 71 131 24 85 6.61e-13 63.5
Msa0219880 MtrunA17_Chr8g0378811 50.000 60 30 0 70 129 51 110 7.47e-13 65.5
Msa0219880 MtrunA17_Chr5g0424051 42.697 89 50 1 50 137 72 160 7.59e-13 65.5
Msa0219880 MtrunA17_Chr4g0042761 53.333 60 28 0 70 129 44 103 1.10e-12 65.5
Msa0219880 MtrunA17_Chr5g0423811 40.426 94 46 2 47 132 63 154 2.06e-12 64.3
Msa0219880 MtrunA17_Chr3g0136541 45.714 70 38 0 76 145 42 111 2.96e-12 63.5
Msa0219880 MtrunA17_Chr3g0137831 55.405 74 29 2 74 146 8 78 3.02e-12 62.8
Msa0219880 MtrunA17_Chr5g0396171 50.877 57 28 0 76 132 26 82 3.37e-12 60.1
Msa0219880 MtrunA17_Chr6g0461941 63.333 60 22 0 73 132 19 78 3.85e-12 62.8
Msa0219880 MtrunA17_Chr3g0108241 51.316 76 35 2 57 131 99 173 6.19e-12 62.8
Msa0219880 MtrunA17_Chr3g0114761 52.308 65 29 1 68 130 19 83 8.85e-12 61.6
Msa0219880 MtrunA17_Chr5g0396741 64.407 59 21 0 74 132 117 175 1.84e-11 62.0
Msa0219880 MtrunA17_Chr5g0398061 37.607 117 58 3 74 176 49 164 2.36e-11 60.8
Msa0219880 MtrunA17_Chr1g0200931 46.032 63 31 1 74 133 23 85 4.21e-11 58.5
Msa0219880 MtrunA17_Chr5g0398091 37.607 117 58 3 74 176 54 169 4.82e-11 60.1
Msa0219880 MtrunA17_Chr6g0473791 45.070 71 38 1 50 120 34 103 4.88e-11 58.5
Msa0219880 MtrunA17_Chr5g0396181 54.098 61 28 0 72 132 19 79 5.58e-11 59.3
Msa0219880 MtrunA17_Chr8g0345531 42.029 69 36 2 56 121 95 162 7.09e-11 60.5
Msa0219880 MtrunA17_Chr1g0186721 53.333 75 30 2 58 131 5 75 9.80e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219880 AT2G40340.3 56.250 144 44 2 17 141 11 154 2.13e-49 162
Msa0219880 AT2G40340.1 56.250 144 44 2 17 141 11 154 3.16e-49 163
Msa0219880 AT2G40340.6 56.250 144 44 2 17 141 18 161 4.40e-49 163
Msa0219880 AT2G40350.2 58.065 124 48 1 17 136 13 136 1.87e-48 155
Msa0219880 AT2G40350.1 58.065 124 48 1 17 136 6 129 2.77e-48 155
Msa0219880 AT5G05410.2 60.714 140 51 2 4 143 13 148 3.99e-39 136
Msa0219880 AT5G05410.1 60.714 140 51 2 4 143 13 148 1.06e-38 135
Msa0219880 AT5G18450.1 68.675 83 26 0 47 129 7 89 2.04e-37 132
Msa0219880 AT1G75490.1 67.816 87 27 1 44 130 13 98 6.02e-37 127
Msa0219880 AT3G11020.1 49.711 173 77 3 20 189 22 187 1.81e-36 130
Msa0219880 AT2G40340.2 62.500 96 21 1 61 141 1 96 5.13e-35 125
Msa0219880 AT2G40340.5 62.500 96 21 1 61 141 1 96 5.13e-35 125
Msa0219880 AT2G40340.4 62.500 96 21 1 61 141 1 96 5.13e-35 125
Msa0219880 AT2G38340.1 61.682 107 32 2 48 145 44 150 2.13e-32 117
Msa0219880 AT3G57600.1 62.963 81 30 0 52 132 6 86 5.86e-31 114
Msa0219880 AT5G61890.1 52.381 84 32 1 47 130 71 146 3.91e-23 93.2
Msa0219880 AT2G33710.1 67.241 58 19 0 73 130 69 126 1.09e-22 91.3
Msa0219880 AT1G46768.1 52.439 82 36 1 70 148 27 108 1.12e-22 89.7
Msa0219880 AT1G46768.2 52.439 82 36 1 70 148 27 108 1.12e-22 89.7
Msa0219880 AT2G33710.2 66.667 63 20 1 69 130 64 126 1.22e-22 91.7
Msa0219880 AT1G46768.3 52.439 82 36 1 70 148 27 108 1.25e-22 89.0
Msa0219880 AT1G78080.1 62.857 70 26 0 63 132 141 210 2.96e-22 92.4
Msa0219880 AT5G13330.1 48.315 89 42 1 42 130 11 95 3.74e-22 89.7
Msa0219880 AT5G65130.2 67.797 59 19 0 74 132 113 171 4.49e-22 90.9
Msa0219880 AT2G47520.1 49.438 89 39 2 74 160 50 134 4.71e-22 88.6
Msa0219880 AT5G65130.1 67.797 59 19 0 74 132 111 169 4.72e-22 90.9
Msa0219880 AT5G47230.1 57.317 82 32 2 50 130 134 213 6.42e-22 90.9
Msa0219880 AT2G22200.1 67.797 59 19 0 74 132 71 129 8.85e-22 89.7
Msa0219880 AT3G16770.1 45.263 95 45 1 74 161 79 173 1.39e-21 89.0
Msa0219880 AT1G22190.1 64.179 67 21 1 74 140 83 146 3.22e-21 88.6
Msa0219880 AT1G71450.1 43.478 138 63 4 56 187 10 138 3.33e-21 86.7
Msa0219880 AT5G25190.1 70.175 57 17 0 74 130 8 64 3.94e-21 86.3
Msa0219880 AT2G35700.1 63.934 61 22 0 73 133 44 104 1.03e-20 85.5
Msa0219880 AT4G16750.1 52.273 88 37 2 47 133 16 99 1.55e-20 84.7
Msa0219880 AT2G40220.1 69.118 68 21 0 62 129 43 110 1.77e-20 87.4
Msa0219880 AT4G06746.1 61.404 57 22 0 74 130 36 92 1.81e-20 84.0
Msa0219880 AT4G39780.1 66.102 59 20 0 74 132 93 151 6.28e-20 85.1
Msa0219880 AT1G36060.1 70.175 57 17 0 74 130 143 199 7.44e-20 85.5
Msa0219880 AT4G32800.1 60.000 65 26 0 69 133 14 78 7.48e-20 84.0
Msa0219880 AT5G67190.1 57.353 68 28 1 74 140 21 88 9.23e-20 82.8
Msa0219880 AT2G20880.1 60.317 63 25 0 74 136 187 249 1.93e-19 84.7
Msa0219880 AT4G28140.1 55.405 74 33 0 74 147 143 216 1.95e-19 84.3
Msa0219880 AT3G16280.1 61.667 60 23 0 74 133 61 120 2.62e-19 82.8
Msa0219880 AT2G44940.1 56.944 72 29 1 62 133 90 159 3.08e-19 83.6
Msa0219880 AT4G11140.1 54.930 71 32 0 74 144 87 157 3.14e-19 83.6
Msa0219880 AT3G16280.2 61.667 60 23 0 74 133 79 138 3.19e-19 82.8
Msa0219880 AT5G51190.1 59.375 64 25 1 68 130 66 129 3.55e-19 82.0
Msa0219880 AT4G17500.1 67.797 59 18 1 73 130 147 205 3.91e-19 82.8
Msa0219880 AT4G13620.1 62.712 59 22 0 74 132 232 290 3.96e-19 84.3
Msa0219880 AT5G47220.1 67.797 59 18 1 73 130 116 174 4.29e-19 82.4
Msa0219880 AT2G25820.1 63.333 60 22 0 74 133 26 85 5.56e-19 81.6
Msa0219880 AT1G72360.1 51.471 68 33 0 66 133 17 84 8.72e-19 80.9
Msa0219880 AT3G60490.1 63.333 60 22 0 74 133 71 130 8.87e-19 81.6
Msa0219880 AT4G36900.1 57.627 59 25 0 74 132 30 88 1.04e-18 80.5
Msa0219880 AT5G11590.1 49.438 89 39 1 45 133 28 110 1.50e-18 80.9
Msa0219880 AT2G36450.1 66.102 59 19 1 74 131 15 73 1.66e-18 79.7
Msa0219880 AT1G72360.3 51.471 68 33 0 66 133 66 133 1.70e-18 81.3
Msa0219880 AT1G72360.2 51.471 68 33 0 66 133 68 135 1.84e-18 80.9
Msa0219880 AT3G23230.1 53.333 75 34 1 68 141 14 88 2.08e-18 78.2
Msa0219880 AT4G17490.1 45.833 96 41 2 46 130 99 194 2.28e-18 81.3
Msa0219880 AT2G44840.1 50.704 71 34 1 63 132 81 151 2.36e-18 80.1
Msa0219880 AT1G01250.1 39.098 133 71 4 51 176 19 148 2.39e-18 79.3
Msa0219880 AT5G25810.1 56.164 73 30 1 74 144 36 108 2.88e-18 79.7
Msa0219880 AT2G23340.1 57.627 59 25 0 74 132 28 86 4.39e-18 78.2
Msa0219880 AT5G25390.2 61.017 59 23 0 74 132 7 65 5.42e-18 78.2
Msa0219880 AT3G50260.1 55.932 59 26 0 74 132 21 79 6.30e-18 77.4
Msa0219880 AT1G15360.1 63.158 57 21 0 74 130 7 63 8.33e-18 78.2
Msa0219880 AT1G15360.2 63.158 57 21 0 74 130 7 63 8.33e-18 78.2
Msa0219880 AT1G21910.1 56.667 60 26 0 74 133 50 109 8.86e-18 78.6
Msa0219880 AT5G44210.1 47.727 88 44 2 72 158 31 117 1.39e-17 77.4
Msa0219880 AT3G20310.1 57.895 57 24 0 74 130 27 83 1.68e-17 78.2
Msa0219880 AT3G15210.1 55.932 59 26 0 74 132 25 83 2.86e-17 77.0
Msa0219880 AT5G61600.1 56.923 65 26 2 73 135 87 151 3.69e-17 77.0
Msa0219880 AT5G13910.1 55.882 68 24 1 74 135 20 87 5.35e-17 76.3
Msa0219880 AT4G25490.1 66.071 56 19 0 74 129 48 103 6.61e-17 75.9
Msa0219880 AT1G12980.1 46.000 100 49 2 54 148 37 136 7.05e-17 77.4
Msa0219880 AT1G28360.1 55.000 60 27 0 72 131 10 69 7.11e-17 75.5
Msa0219880 AT3G23240.1 47.674 86 30 2 45 129 67 138 8.42e-17 75.9
Msa0219880 AT4G25470.1 46.939 98 44 2 41 131 12 108 1.02e-16 75.5
Msa0219880 AT1G71520.1 40.816 98 51 2 61 154 1 95 1.21e-16 73.6
Msa0219880 AT2G31230.1 61.538 65 23 2 73 136 85 148 1.60e-16 75.5
Msa0219880 AT1G28160.1 49.383 81 41 0 74 154 39 119 1.77e-16 75.5
Msa0219880 AT1G03800.1 45.349 86 45 1 45 130 26 109 1.85e-16 75.5
Msa0219880 AT5G07580.1 57.627 59 24 1 73 130 109 167 2.39e-16 74.3
Msa0219880 AT4G27950.1 58.929 56 23 0 74 129 118 173 2.71e-16 75.9
Msa0219880 AT3G61630.1 58.929 56 23 0 74 129 105 160 3.67e-16 75.5
Msa0219880 AT5G51990.1 64.286 56 20 0 74 129 54 109 4.52e-16 73.9
Msa0219880 AT1G22810.1 52.308 65 29 1 70 132 10 74 5.53e-16 72.0
Msa0219880 AT4G25480.1 43.434 99 52 2 33 131 14 108 8.34e-16 73.2
Msa0219880 AT5G25390.1 59.322 59 21 1 74 132 7 62 8.37e-16 72.4
Msa0219880 AT5G43410.1 59.322 59 23 1 74 131 15 73 8.63e-16 70.9
Msa0219880 AT2G46310.1 56.667 60 26 0 70 129 95 154 1.01e-15 73.9
Msa0219880 AT4G31060.1 37.255 102 63 1 61 162 15 115 1.05e-15 72.0
Msa0219880 AT1G19210.1 47.059 68 36 0 64 131 2 69 1.41e-15 71.6
Msa0219880 AT1G24590.1 62.500 56 21 0 74 129 58 113 1.66e-15 73.6
Msa0219880 AT5G21960.1 38.532 109 47 2 74 162 7 115 3.49e-15 71.2
Msa0219880 AT1G77200.1 62.295 61 23 0 74 134 43 103 3.61e-15 72.0
Msa0219880 AT5G18560.1 57.143 56 24 0 74 129 55 110 3.61e-15 72.8
Msa0219880 AT1G28370.1 54.386 57 26 0 74 130 20 76 3.95e-15 70.1
Msa0219880 AT1G74930.1 50.820 61 30 0 71 131 18 78 4.55e-15 70.5
Msa0219880 AT1G50640.1 54.386 57 26 0 74 130 28 84 5.46e-15 70.9
Msa0219880 AT5G53290.1 57.143 56 24 0 74 129 125 180 5.62e-15 72.4
Msa0219880 AT1G28370.2 54.386 57 26 0 74 130 58 114 5.84e-15 70.5
Msa0219880 AT5G50080.2 60.000 70 25 1 64 130 73 142 6.16e-15 70.9
Msa0219880 AT5G50080.1 59.155 71 26 1 63 130 63 133 6.34e-15 70.9
Msa0219880 AT5G07310.1 65.517 58 20 0 73 130 91 148 1.03e-14 70.9
Msa0219880 AT1G77640.1 54.839 62 28 0 74 135 43 104 1.06e-14 70.5
Msa0219880 AT4G23750.2 57.143 56 24 0 74 129 122 177 1.11e-14 71.6
Msa0219880 AT4G23750.1 57.143 56 24 0 74 129 122 177 1.11e-14 71.6
Msa0219880 AT4G34410.1 62.903 62 23 0 74 135 136 197 1.25e-14 70.9
Msa0219880 AT1G43160.1 64.912 57 20 0 74 130 61 117 1.30e-14 69.3
Msa0219880 AT1G53910.1 41.007 139 75 2 46 177 90 228 1.76e-14 71.2
Msa0219880 AT1G53910.2 41.007 139 75 2 46 177 90 228 1.76e-14 71.2
Msa0219880 AT1G12890.1 50.704 71 32 1 74 141 21 91 2.30e-14 69.3
Msa0219880 AT1G71130.1 58.065 62 21 1 73 129 78 139 3.00e-14 67.8
Msa0219880 AT1G53910.3 45.192 104 57 0 74 177 123 226 3.13e-14 70.5
Msa0219880 AT5G11190.1 43.750 112 56 3 74 185 7 111 4.28e-14 67.8
Msa0219880 AT5G64750.1 56.140 57 24 1 81 136 192 248 4.72e-14 70.1
Msa0219880 AT3G14230.3 64.912 57 20 0 74 130 123 179 7.07e-14 69.3
Msa0219880 AT3G14230.2 64.912 57 20 0 74 130 124 180 7.16e-14 69.3
Msa0219880 AT1G22985.1 46.512 86 41 2 73 153 74 159 7.27e-14 66.6
Msa0219880 AT3G14230.1 64.912 57 20 0 74 130 128 184 7.75e-14 69.3
Msa0219880 AT5G19790.1 50.000 70 35 0 62 131 10 79 8.09e-14 68.2
Msa0219880 AT1G12610.1 44.444 99 50 4 74 170 30 125 1.08e-12 64.7
Msa0219880 AT4G18450.1 52.308 65 29 2 74 136 110 174 1.56e-12 65.1
Msa0219880 AT1G63030.2 42.857 98 53 3 74 170 30 125 2.51e-12 63.2
Msa0219880 AT1G63030.1 42.857 98 53 3 74 170 30 125 2.51e-12 63.2
Msa0219880 AT1G44830.1 53.846 65 29 1 74 137 35 99 2.78e-12 63.5
Msa0219880 AT1G64380.1 64.407 59 21 0 74 132 136 194 3.75e-12 64.3
Msa0219880 AT1G33760.1 53.968 63 29 0 70 132 16 78 6.22e-12 62.0
Msa0219880 AT5G61590.1 59.322 59 23 1 73 130 106 164 1.69e-11 61.2
Msa0219880 AT3G23220.1 51.282 78 31 2 74 150 14 85 1.79e-11 59.7

Find 80 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCGAAAGCTTGTGAAAA+AGG 0.300775 2_1:+67828012 Msa0219880:CDS
CATTTCTTTAACACTGGATT+TGG 0.306551 2_1:+67828953 Msa0219880:three_prime_UTR
ACACCCTTTCTTCGATCCTT+TGG 0.358882 2_1:-67828139 None:intergenic
ACTCCTATCCCTGAGTTATC+TGG 0.383635 2_1:-67828468 None:intergenic
AGTAGAAGACAGTAATGATA+TGG 0.391317 2_1:+67828488 Msa0219880:CDS
TCTCAACTTTCCTAACGTTT+CGG 0.394413 2_1:+67828359 Msa0219880:CDS
TTGGCTGCAACTTTGCGAAC+AGG 0.401300 2_1:-67828120 None:intergenic
CTGAATATTAAGAGTGCATA+AGG 0.402987 2_1:-67828750 None:intergenic
AATGTCCATTTCTTTAACAC+TGG 0.412721 2_1:+67828947 Msa0219880:three_prime_UTR
AGGCTTATCCACATCATTGC+CGG 0.425173 2_1:-67828100 None:intergenic
CTGCTTTATACTTAAGCATA+AGG 0.431779 2_1:-67828520 None:intergenic
CAAATCCAGTGTTAAAGAAA+TGG 0.437393 2_1:-67828952 None:intergenic
TTATGTGTTGTAGTGCTACT+TGG 0.437902 2_1:+67827974 Msa0219880:intron
TTGCTTATGACGAGGCAGCC+AGG 0.450923 2_1:+67828313 Msa0219880:CDS
TGAGTTATCTGGTATTATCA+TGG 0.471291 2_1:-67828457 None:intergenic
TAAGTCCCTGGGTAAGATAC+TGG 0.475551 2_1:+67828044 Msa0219880:CDS
AAAACTAAAATGAACTTGGT+TGG 0.478191 2_1:+67828720 Msa0219880:three_prime_UTR
ATCATTGCCGGCATCAAGTT+GGG 0.479760 2_1:-67828088 None:intergenic
GAGGTGTGAGACAAAGGACT+TGG 0.482842 2_1:+67828205 Msa0219880:CDS
TTGTAAAACTAAAATGAACT+TGG 0.490463 2_1:+67828716 Msa0219880:three_prime_UTR
AAAGGGTGTATGAAAGGTAA+AGG 0.503890 2_1:+67828153 Msa0219880:CDS
CATCATTGCCGGCATCAAGT+TGG 0.505346 2_1:-67828089 None:intergenic
TTCTTGCTAATGATCAACTT+AGG 0.507229 2_1:+67828645 Msa0219880:three_prime_UTR
AAGTATAAAGCAGGAGAATG+AGG 0.509355 2_1:+67828530 Msa0219880:CDS
TTGGATTGAATTGCATATGT+TGG 0.511079 2_1:+67827993 Msa0219880:CDS
GGAGAATGAGGAAGGTGAGC+CGG 0.511312 2_1:+67828542 Msa0219880:CDS
TGCTTATGACGAGGCAGCCA+GGG 0.511345 2_1:+67828314 Msa0219880:CDS
TGAGCCGGAGATAAGTTAAT+CGG 0.512309 2_1:+67828557 Msa0219880:exon
AGGGGATGGATCTAAGTCCC+TGG 0.516262 2_1:+67828032 Msa0219880:CDS
AATCTAGTAACCGAAACGTT+AGG 0.516531 2_1:-67828369 None:intergenic
TACTCCCTCGATTCGGCTCA+CGG 0.520241 2_1:-67828248 None:intergenic
TTCTCCAGACGCAAATCACT+TGG 0.520513 2_1:+67828413 Msa0219880:CDS
CATAGCCTACTCCCTCGATT+CGG 0.522628 2_1:-67828255 None:intergenic
ATACTTAAGCATAAGGACAT+TGG 0.526606 2_1:-67828513 None:intergenic
ATCTGGTATTATCATGGACT+CGG 0.526869 2_1:-67828451 None:intergenic
GAGGCAGCCAGGGCAATGTA+TGG 0.529105 2_1:+67828324 Msa0219880:CDS
TATTGCAACAGCTAATCAAA+AGG 0.529508 2_1:-67828691 None:intergenic
AACTCGCGGTGTAATTATAG+AGG 0.530701 2_1:+67828186 Msa0219880:CDS
GCAGCCAAAGGATCGAAGAA+AGG 0.536603 2_1:+67828135 Msa0219880:CDS
CTTATGCTTAAGTATAAAGC+AGG 0.544467 2_1:+67828521 Msa0219880:CDS
ATAAAGCAGGAGAATGAGGA+AGG 0.546959 2_1:+67828534 Msa0219880:CDS
TATAATGCCCAACTTGATGC+CGG 0.548013 2_1:+67828081 Msa0219880:CDS
ACTGCCAAGTGATTTGCGTC+TGG 0.548587 2_1:-67828417 None:intergenic
GAAATCCGTGAGCCGAATCG+AGG 0.551198 2_1:+67828243 Msa0219880:CDS
AAATCCGTGAGCCGAATCGA+GGG 0.551988 2_1:+67828244 Msa0219880:CDS
ATGATAATACCAGATAACTC+AGG 0.552682 2_1:+67828459 Msa0219880:CDS
AGGTGTGAGACAAAGGACTT+GGG 0.555224 2_1:+67828206 Msa0219880:CDS
ATACCAGATAACTCAGGGAT+AGG 0.558390 2_1:+67828465 Msa0219880:CDS
TAATATCTTGTGATCTGCCC+TGG 0.558557 2_1:+67828859 Msa0219880:three_prime_UTR
TGGGTAAGATACTGGCAAGA+TGG 0.562078 2_1:+67828052 Msa0219880:CDS
CAGCCAAAGGATCGAAGAAA+GGG 0.570936 2_1:+67828136 Msa0219880:CDS
TCGAAGAAAGGGTGTATGAA+AGG 0.574846 2_1:+67828147 Msa0219880:CDS
ATTATAGAGGTGTGAGACAA+AGG 0.574888 2_1:+67828199 Msa0219880:CDS
ATCTTGCCAGTATCTTACCC+AGG 0.580110 2_1:-67828050 None:intergenic
TATGAAAGGTAAAGGAGGGC+CGG 0.582521 2_1:+67828161 Msa0219880:CDS
GTAAGATACTGGCAAGATGG+AGG 0.583870 2_1:+67828055 Msa0219880:CDS
AAGAGCAGCACCAATGGCAG+TGG 0.584735 2_1:-67828292 None:intergenic
CGAATCGAGGGAGTAGGCTA+TGG 0.587506 2_1:+67828256 Msa0219880:CDS
GGGGATGGATCTAAGTCCCT+GGG 0.593610 2_1:+67828033 Msa0219880:CDS
ACTTGATGCCGGCAATGATG+TGG 0.594869 2_1:+67828092 Msa0219880:CDS
TAAGATACTGGCAAGATGGA+GGG 0.596457 2_1:+67828056 Msa0219880:CDS
GGAACCGATTAACTTATCTC+CGG 0.598177 2_1:-67828561 None:intergenic
GTTCGCAAAGTTGCAGCCAA+AGG 0.599394 2_1:+67828123 Msa0219880:CDS
ACGAGAACCATACATTGCCC+TGG 0.603747 2_1:-67828331 None:intergenic
GTGAGCCGAATCGAGGGAGT+AGG 0.603966 2_1:+67828250 Msa0219880:CDS
TACTAGAGCACTCTGATCTG+TGG 0.604104 2_1:+67828890 Msa0219880:three_prime_UTR
AACGTTAGGAAAGTTGAGAC+GGG 0.606145 2_1:-67828355 None:intergenic
CGAGGGAGTAGGCTATGGCT+AGG 0.607993 2_1:+67828261 Msa0219880:CDS
AAACGTTAGGAAAGTTGAGA+CGG 0.611794 2_1:-67828356 None:intergenic
TGATAATACCAGATAACTCA+GGG 0.620246 2_1:+67828460 Msa0219880:CDS
GGGTGTATGAAAGGTAAAGG+AGG 0.630003 2_1:+67828156 Msa0219880:CDS
TCTTGCCAGTATCTTACCCA+GGG 0.645583 2_1:-67828049 None:intergenic
TGCTGCTCTTGCTTATGACG+AGG 0.649251 2_1:+67828305 Msa0219880:CDS
ATAAGCAAGAGCAGCACCAA+TGG 0.652121 2_1:-67828298 None:intergenic
GGTGTATGAAAGGTAAAGGA+GGG 0.659313 2_1:+67828157 Msa0219880:CDS
AAGGAGGGCCGGAAAACTCG+CGG 0.659892 2_1:+67828172 Msa0219880:CDS
CAAAATGTACATCATCAACA+AGG 0.664178 2_1:-67828582 None:intergenic
GGTGTGAGACAAAGGACTTG+GGG 0.669400 2_1:+67828207 Msa0219880:CDS
GTGTGAGACAAAGGACTTGG+GGG 0.684279 2_1:+67828208 Msa0219880:CDS
AGTGTATAGTGTATACCTAG+AGG 0.701995 2_1:-67828833 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGATAAACATGAAAAAT+CGG - chr2_1:67827160-67827179 None:intergenic 15.0%
!! TTGAAGAATGAAAAGAAAAT+GGG - chr2_1:67826423-67826442 None:intergenic 20.0%
!! TTTGAAGAATGAAAAGAAAA+TGG - chr2_1:67826424-67826443 None:intergenic 20.0%
!!! TCTTTTCATTCTTCAAATTA+TGG + chr2_1:67826427-67826446 Msa0219880:intron 20.0%
!!! CTTTTCATTCTTCAAATTAT+GGG + chr2_1:67826428-67826447 Msa0219880:intron 20.0%
!!! AATTAATCTAGAATCAATTC+TGG + chr2_1:67826713-67826732 Msa0219880:intron 20.0%
!! TTAAAAGAAACATGTTTAGA+GGG + chr2_1:67826904-67826923 Msa0219880:intron 20.0%
!!! TTCATGTCACAATTTATTTT+TGG + chr2_1:67827217-67827236 Msa0219880:intron 20.0%
!! ATGTGTAATAATTGTGATAA+GGG - chr2_1:67827442-67827461 None:intergenic 20.0%
!!! TGTTCTGAAATTTTTTCTTA+TGG + chr2_1:67827467-67827486 Msa0219880:intron 20.0%
!! ATAAATCACTCAATTCATAT+TGG - chr2_1:67827899-67827918 None:intergenic 20.0%
!! AAAAATCTGAAAATGTTAAG+AGG - chr2_1:67827943-67827962 None:intergenic 20.0%
!! TTGTAAAACTAAAATGAACT+TGG + chr2_1:67828716-67828735 Msa0219880:three_prime_UTR 20.0%
! AGAATCAATGTGAAAAAGAT+GGG - chr2_1:67826329-67826348 None:intergenic 25.0%
! AAGAATCAATGTGAAAAAGA+TGG - chr2_1:67826330-67826349 None:intergenic 25.0%
! AATGAAAAGAAAATGGGAAA+AGG - chr2_1:67826417-67826436 None:intergenic 25.0%
!! AACACACTTTTGCAAAATTA+CGG - chr2_1:67826592-67826611 None:intergenic 25.0%
!! AAAATTGAAAAGTGAGTTGA+AGG + chr2_1:67826656-67826675 Msa0219880:intron 25.0%
! AAGGTAAAGTGATTTATGTT+TGG + chr2_1:67826675-67826694 Msa0219880:intron 25.0%
!! TAAACATGTTTCTTTTAACC+CGG - chr2_1:67826902-67826921 None:intergenic 25.0%
! GTTAAAAGAAACATGTTTAG+AGG + chr2_1:67826903-67826922 Msa0219880:intron 25.0%
! TAAAAGAAACATGTTTAGAG+GGG + chr2_1:67826905-67826924 Msa0219880:intron 25.0%
! TGATCATTAATGTATGATGA+AGG + chr2_1:67826930-67826949 Msa0219880:intron 25.0%
!! AGAAAAATCTGAAATGTCAA+TGG - chr2_1:67827084-67827103 None:intergenic 25.0%
! GATGTGTAATAATTGTGATA+AGG - chr2_1:67827443-67827462 None:intergenic 25.0%
! AAAACTAAAATGAACTTGGT+TGG + chr2_1:67828720-67828739 Msa0219880:three_prime_UTR 25.0%
! ATGCTGTTTGTACTTTGAAT+TGG + chr2_1:67826529-67826548 Msa0219880:intron 30.0%
! TAATCTAGAATCAATTCTGG+AGG + chr2_1:67826716-67826735 Msa0219880:intron 30.0%
GCAAAATCAATTCTACTTGA+TGG + chr2_1:67826738-67826757 Msa0219880:intron 30.0%
TCATTAATGTATGATGAAGG+TGG + chr2_1:67826933-67826952 Msa0219880:intron 30.0%
AATGACCAACACATTAATGA+AGG + chr2_1:67826962-67826981 Msa0219880:intron 30.0%
CATAACCTTCATTAATGTGT+TGG - chr2_1:67826970-67826989 None:intergenic 30.0%
CAACTTGTCAGATTATACAA+AGG - chr2_1:67827359-67827378 None:intergenic 30.0%
TGTAATAATTGTGATAAGGG+AGG - chr2_1:67827439-67827458 None:intergenic 30.0%
!!! GACTATTTTGATCTTCACAA+TGG + chr2_1:67827494-67827513 Msa0219880:intron 30.0%
TCTTCTGCTACAATTCATAT+TGG - chr2_1:67827866-67827885 None:intergenic 30.0%
TTGGATTGAATTGCATATGT+TGG + chr2_1:67827993-67828012 Msa0219880:CDS 30.0%
TGAGTTATCTGGTATTATCA+TGG - chr2_1:67828460-67828479 None:intergenic 30.0%
ATGATAATACCAGATAACTC+AGG + chr2_1:67828459-67828478 Msa0219880:CDS 30.0%
TGATAATACCAGATAACTCA+GGG + chr2_1:67828460-67828479 Msa0219880:CDS 30.0%
AGTAGAAGACAGTAATGATA+TGG + chr2_1:67828488-67828507 Msa0219880:CDS 30.0%
ATACTTAAGCATAAGGACAT+TGG - chr2_1:67828516-67828535 None:intergenic 30.0%
CTGCTTTATACTTAAGCATA+AGG - chr2_1:67828523-67828542 None:intergenic 30.0%
CTTATGCTTAAGTATAAAGC+AGG + chr2_1:67828521-67828540 Msa0219880:CDS 30.0%
CAAAATGTACATCATCAACA+AGG - chr2_1:67828585-67828604 None:intergenic 30.0%
! ATGATGTACATTTTGCTTAC+TGG + chr2_1:67828590-67828609 Msa0219880:three_prime_UTR 30.0%
! TGATGTACATTTTGCTTACT+GGG + chr2_1:67828591-67828610 Msa0219880:three_prime_UTR 30.0%
TTCTTGCTAATGATCAACTT+AGG + chr2_1:67828645-67828664 Msa0219880:three_prime_UTR 30.0%
TATTGCAACAGCTAATCAAA+AGG - chr2_1:67828694-67828713 None:intergenic 30.0%
! CTGAATATTAAGAGTGCATA+AGG - chr2_1:67828753-67828772 None:intergenic 30.0%
!!! TACATTTTGTTTTTGCCTCT+AGG + chr2_1:67828818-67828837 Msa0219880:three_prime_UTR 30.0%
! GCTCTAGTATAATTTTACCA+GGG - chr2_1:67828879-67828898 None:intergenic 30.0%
! TGCTCTAGTATAATTTTACC+AGG - chr2_1:67828880-67828899 None:intergenic 30.0%
!! TTGAATAGTTCCATTTTTGC+TGG + chr2_1:67828923-67828942 Msa0219880:three_prime_UTR 30.0%
AATGTCCATTTCTTTAACAC+TGG + chr2_1:67828947-67828966 Msa0219880:three_prime_UTR 30.0%
CAAATCCAGTGTTAAAGAAA+TGG - chr2_1:67828955-67828974 None:intergenic 30.0%
CATTTCTTTAACACTGGATT+TGG + chr2_1:67828953-67828972 Msa0219880:three_prime_UTR 30.0%
!!! AAGAAACTAGGGTTTTGTTC+GGG - chr2_1:67826232-67826251 None:intergenic 35.0%
!!! CAAGAAACTAGGGTTTTGTT+CGG - chr2_1:67826233-67826252 None:intergenic 35.0%
ACAAAACCCTAGTTTCTTGT+CGG + chr2_1:67826234-67826253 Msa0219880:intron 35.0%
GAAAAAGATGGGTGCATATT+GGG - chr2_1:67826318-67826337 None:intergenic 35.0%
TGAAAAAGATGGGTGCATAT+TGG - chr2_1:67826319-67826338 None:intergenic 35.0%
GATATATTACCTGAGTGAAG+AGG - chr2_1:67826395-67826414 None:intergenic 35.0%
TTGATATCATGCCGAAATCA+CGG + chr2_1:67826559-67826578 Msa0219880:intron 35.0%
! ACACTTTTGCAAAATTACGG+TGG - chr2_1:67826589-67826608 None:intergenic 35.0%
GGAGTCAAAAATGATTCTTG+AGG - chr2_1:67826793-67826812 None:intergenic 35.0%
!! ATTTTTGACTCCTCCAAAAG+TGG + chr2_1:67826801-67826820 Msa0219880:intron 35.0%
!! TGTAAGTTTGGTTCCACTTT+TGG - chr2_1:67826817-67826836 None:intergenic 35.0%
ATCTAACTGTGATACCTAAC+CGG + chr2_1:67826880-67826899 Msa0219880:intron 35.0%
! ATGTTTCTTTTAACCCGGTT+AGG - chr2_1:67826897-67826916 None:intergenic 35.0%
ATGTATGATGAAGGTGGTTA+TGG + chr2_1:67826939-67826958 Msa0219880:intron 35.0%
TGAATAAGAACAACCAGTTC+AGG + chr2_1:67827290-67827309 Msa0219880:intron 35.0%
ACATCGAACAACTTCTGTAT+TGG + chr2_1:67827403-67827422 Msa0219880:intron 35.0%
CAACTTCTGTATTGGAAGTT+TGG + chr2_1:67827411-67827430 Msa0219880:intron 35.0%
GTGAAGTGATAATTCTGTCA+TGG - chr2_1:67827566-67827585 None:intergenic 35.0%
ATTTCCTATCCCACTGAATT+TGG - chr2_1:67827809-67827828 None:intergenic 35.0%
TTCAGTGGGATAGGAAATTA+TGG + chr2_1:67827811-67827830 Msa0219880:intron 35.0%
! TTATGTGTTGTAGTGCTACT+TGG + chr2_1:67827974-67827993 Msa0219880:intron 35.0%
! AAAGGGTGTATGAAAGGTAA+AGG + chr2_1:67828153-67828172 Msa0219880:CDS 35.0%
! ATTATAGAGGTGTGAGACAA+AGG + chr2_1:67828199-67828218 Msa0219880:CDS 35.0%
AAACGTTAGGAAAGTTGAGA+CGG - chr2_1:67828359-67828378 None:intergenic 35.0%
TCTCAACTTTCCTAACGTTT+CGG + chr2_1:67828359-67828378 Msa0219880:CDS 35.0%
AATCTAGTAACCGAAACGTT+AGG - chr2_1:67828372-67828391 None:intergenic 35.0%
ATCTGGTATTATCATGGACT+CGG - chr2_1:67828454-67828473 None:intergenic 35.0%
AAGTATAAAGCAGGAGAATG+AGG + chr2_1:67828530-67828549 Msa0219880:CDS 35.0%
!! TGCTTACTGGGATTTTGATA+TGG + chr2_1:67828603-67828622 Msa0219880:three_prime_UTR 35.0%
AGTGTATAGTGTATACCTAG+AGG - chr2_1:67828836-67828855 None:intergenic 35.0%
ATGGACATTTCCAGCAAAAA+TGG - chr2_1:67828936-67828955 None:intergenic 35.0%
!!! AGAAACTAGGGTTTTGTTCG+GGG - chr2_1:67826231-67826250 None:intergenic 40.0%
ATGACACCGACAAGAAACTA+GGG - chr2_1:67826243-67826262 None:intergenic 40.0%
!! TTCTTCTTTGAAGCTCTCTC+AGG + chr2_1:67826349-67826368 Msa0219880:intron 40.0%
! AGTGAAGAGGTGTGAGAAAT+TGG - chr2_1:67826382-67826401 None:intergenic 40.0%
!! AAGTTTGGTTCCACTTTTGG+AGG - chr2_1:67826814-67826833 None:intergenic 40.0%
GCGAAAGCTCAATGTAAGTT+TGG - chr2_1:67826829-67826848 None:intergenic 40.0%
CAGTTAGATTGCCGAAATCA+CGG - chr2_1:67826869-67826888 None:intergenic 40.0%
TCTAACTGTGATACCTAACC+GGG + chr2_1:67826881-67826900 Msa0219880:intron 40.0%
TTGTCAGTGTCATGCTATAC+TGG + chr2_1:67826990-67827009 Msa0219880:intron 40.0%
! TGCTATACTGGTTAGCGAAT+TGG + chr2_1:67827002-67827021 Msa0219880:intron 40.0%
! GCTATACTGGTTAGCGAATT+GGG + chr2_1:67827003-67827022 Msa0219880:intron 40.0%
GTCAGACAATTGAATCGACA+AGG - chr2_1:67827251-67827270 None:intergenic 40.0%
ACTGGTTGTTCTTATTCACG+AGG - chr2_1:67827288-67827307 None:intergenic 40.0%
TAATTCTGTCATGGTCAGAG+TGG - chr2_1:67827557-67827576 None:intergenic 40.0%
TTGTAGGCTAGAATGGGATA+TGG + chr2_1:67827613-67827632 Msa0219880:intron 40.0%
TTTCACGCAGTAAACAGTCT+CGG + chr2_1:67827663-67827682 Msa0219880:intron 40.0%
GCTGTTAATCAGAGATCAGA+TGG + chr2_1:67827685-67827704 Msa0219880:intron 40.0%
AGTTACTGCACCAAATTCAG+TGG + chr2_1:67827796-67827815 Msa0219880:intron 40.0%
GTTACTGCACCAAATTCAGT+GGG + chr2_1:67827797-67827816 Msa0219880:intron 40.0%
TTGGCGAAAGCTTGTGAAAA+AGG + chr2_1:67828012-67828031 Msa0219880:CDS 40.0%
TGGCGAAAGCTTGTGAAAAA+GGG + chr2_1:67828013-67828032 Msa0219880:CDS 40.0%
AAAGCTTGTGAAAAAGGGGA+TGG + chr2_1:67828018-67828037 Msa0219880:CDS 40.0%
TAAGATACTGGCAAGATGGA+GGG + chr2_1:67828056-67828075 Msa0219880:CDS 40.0%
TATAATGCCCAACTTGATGC+CGG + chr2_1:67828081-67828100 Msa0219880:CDS 40.0%
! TCGAAGAAAGGGTGTATGAA+AGG + chr2_1:67828147-67828166 Msa0219880:CDS 40.0%
GGTGTATGAAAGGTAAAGGA+GGG + chr2_1:67828157-67828176 Msa0219880:CDS 40.0%
! TAATTACACCGCGAGTTTTC+CGG - chr2_1:67828183-67828202 None:intergenic 40.0%
AACTCGCGGTGTAATTATAG+AGG + chr2_1:67828186-67828205 Msa0219880:CDS 40.0%
AACGTTAGGAAAGTTGAGAC+GGG - chr2_1:67828358-67828377 None:intergenic 40.0%
ATACCAGATAACTCAGGGAT+AGG + chr2_1:67828465-67828484 Msa0219880:CDS 40.0%
ATAAAGCAGGAGAATGAGGA+AGG + chr2_1:67828534-67828553 Msa0219880:CDS 40.0%
TGAGCCGGAGATAAGTTAAT+CGG + chr2_1:67828557-67828576 Msa0219880:exon 40.0%
GGAACCGATTAACTTATCTC+CGG - chr2_1:67828564-67828583 None:intergenic 40.0%
TAATATCTTGTGATCTGCCC+TGG + chr2_1:67828859-67828878 Msa0219880:three_prime_UTR 40.0%
GATGACACCGACAAGAAACT+AGG - chr2_1:67826244-67826263 None:intergenic 45.0%
TTTCTCACACCTCTTCACTC+AGG + chr2_1:67826383-67826402 Msa0219880:intron 45.0%
ATATCATGCCGAAATCACGG+TGG + chr2_1:67826562-67826581 Msa0219880:intron 45.0%
TATCATGCCGAAATCACGGT+GGG + chr2_1:67826563-67826582 Msa0219880:intron 45.0%
GAGCTTTCGCAAAACCACTA+TGG + chr2_1:67826839-67826858 Msa0219880:intron 45.0%
ACTATGGCTCACCGTGATTT+CGG + chr2_1:67826855-67826874 Msa0219880:intron 45.0%
TTCAGGCATATCGTGGTCTA+TGG + chr2_1:67827307-67827326 Msa0219880:intron 45.0%
CACACTGCATCGAAAAAGAG+TGG + chr2_1:67827583-67827602 Msa0219880:intron 45.0%
GCATCGAAAAAGAGTGGTGT+CGG + chr2_1:67827589-67827608 Msa0219880:intron 45.0%
!! AAAGAGTGGTGTCGGTTTGT+AGG + chr2_1:67827597-67827616 Msa0219880:intron 45.0%
!! TGTCGGTTTGTAGGCTAGAA+TGG + chr2_1:67827606-67827625 Msa0219880:intron 45.0%
!! GTCGGTTTGTAGGCTAGAAT+GGG + chr2_1:67827607-67827626 Msa0219880:intron 45.0%
TGCACCAAATTCAGTGGGAT+AGG + chr2_1:67827802-67827821 Msa0219880:intron 45.0%
GGCGAAAGCTTGTGAAAAAG+GGG + chr2_1:67828014-67828033 Msa0219880:CDS 45.0%
TAAGTCCCTGGGTAAGATAC+TGG + chr2_1:67828044-67828063 Msa0219880:CDS 45.0%
TCTTGCCAGTATCTTACCCA+GGG - chr2_1:67828052-67828071 None:intergenic 45.0%
ATCTTGCCAGTATCTTACCC+AGG - chr2_1:67828053-67828072 None:intergenic 45.0%
TGGGTAAGATACTGGCAAGA+TGG + chr2_1:67828052-67828071 Msa0219880:CDS 45.0%
GTAAGATACTGGCAAGATGG+AGG + chr2_1:67828055-67828074 Msa0219880:CDS 45.0%
ATCATTGCCGGCATCAAGTT+GGG - chr2_1:67828091-67828110 None:intergenic 45.0%
AGGCTTATCCACATCATTGC+CGG - chr2_1:67828103-67828122 None:intergenic 45.0%
CAGCCAAAGGATCGAAGAAA+GGG + chr2_1:67828136-67828155 Msa0219880:CDS 45.0%
ACACCCTTTCTTCGATCCTT+TGG - chr2_1:67828142-67828161 None:intergenic 45.0%
GGGTGTATGAAAGGTAAAGG+AGG + chr2_1:67828156-67828175 Msa0219880:CDS 45.0%
TATGAAAGGTAAAGGAGGGC+CGG + chr2_1:67828161-67828180 Msa0219880:CDS 45.0%
AGGTGTGAGACAAAGGACTT+GGG + chr2_1:67828206-67828225 Msa0219880:CDS 45.0%
ACAAAGGACTTGGGGGAAAT+GGG + chr2_1:67828215-67828234 Msa0219880:CDS 45.0%
! GGTACTTTTACCACTGCCAT+TGG + chr2_1:67828282-67828301 Msa0219880:CDS 45.0%
ATAAGCAAGAGCAGCACCAA+TGG - chr2_1:67828301-67828320 None:intergenic 45.0%
TTCTCCAGACGCAAATCACT+TGG + chr2_1:67828413-67828432 Msa0219880:CDS 45.0%
ACTCCTATCCCTGAGTTATC+TGG - chr2_1:67828471-67828490 None:intergenic 45.0%
! TACTAGAGCACTCTGATCTG+TGG + chr2_1:67828890-67828909 Msa0219880:three_prime_UTR 45.0%
GAAATCACGGTGAGCCATAG+TGG - chr2_1:67826856-67826875 None:intergenic 50.0%
CAACCAGTTCAGGCATATCG+TGG + chr2_1:67827300-67827319 Msa0219880:intron 50.0%
AGACCACGATATGCCTGAAC+TGG - chr2_1:67827306-67827325 None:intergenic 50.0%
GGGATATGGATTTCCTGCTG+TGG + chr2_1:67827627-67827646 Msa0219880:intron 50.0%
ACGTGTGCTTTAACCACAGC+AGG - chr2_1:67827643-67827662 None:intergenic 50.0%
CATCATTGCCGGCATCAAGT+TGG - chr2_1:67828092-67828111 None:intergenic 50.0%
ACTTGATGCCGGCAATGATG+TGG + chr2_1:67828092-67828111 Msa0219880:CDS 50.0%
TTGGCTGCAACTTTGCGAAC+AGG - chr2_1:67828123-67828142 None:intergenic 50.0%
GTTCGCAAAGTTGCAGCCAA+AGG + chr2_1:67828123-67828142 Msa0219880:CDS 50.0%
GCAGCCAAAGGATCGAAGAA+AGG + chr2_1:67828135-67828154 Msa0219880:CDS 50.0%
GAGGTGTGAGACAAAGGACT+TGG + chr2_1:67828205-67828224 Msa0219880:CDS 50.0%
GGTGTGAGACAAAGGACTTG+GGG + chr2_1:67828207-67828226 Msa0219880:CDS 50.0%
GTGTGAGACAAAGGACTTGG+GGG + chr2_1:67828208-67828227 Msa0219880:CDS 50.0%
GACAAAGGACTTGGGGGAAA+TGG + chr2_1:67828214-67828233 Msa0219880:CDS 50.0%
AAATCCGTGAGCCGAATCGA+GGG + chr2_1:67828244-67828263 Msa0219880:CDS 50.0%
CATAGCCTACTCCCTCGATT+CGG - chr2_1:67828258-67828277 None:intergenic 50.0%
TGCTGCTCTTGCTTATGACG+AGG + chr2_1:67828305-67828324 Msa0219880:CDS 50.0%
ACGAGAACCATACATTGCCC+TGG - chr2_1:67828334-67828353 None:intergenic 50.0%
! ACTGCCAAGTGATTTGCGTC+TGG - chr2_1:67828420-67828439 None:intergenic 50.0%
AGGGGATGGATCTAAGTCCC+TGG + chr2_1:67828032-67828051 Msa0219880:CDS 55.0%
GGGGATGGATCTAAGTCCCT+GGG + chr2_1:67828033-67828052 Msa0219880:CDS 55.0%
GAAATCCGTGAGCCGAATCG+AGG + chr2_1:67828243-67828262 Msa0219880:CDS 55.0%
!! TACTCCCTCGATTCGGCTCA+CGG - chr2_1:67828251-67828270 None:intergenic 55.0%
CGAATCGAGGGAGTAGGCTA+TGG + chr2_1:67828256-67828275 Msa0219880:CDS 55.0%
AAGAGCAGCACCAATGGCAG+TGG - chr2_1:67828295-67828314 None:intergenic 55.0%
TTGCTTATGACGAGGCAGCC+AGG + chr2_1:67828313-67828332 Msa0219880:CDS 55.0%
TGCTTATGACGAGGCAGCCA+GGG + chr2_1:67828314-67828333 Msa0219880:CDS 55.0%
GGAGAATGAGGAAGGTGAGC+CGG + chr2_1:67828542-67828561 Msa0219880:CDS 55.0%
ACGGTGGCCCACCGTGATTT+CGG - chr2_1:67826573-67826592 None:intergenic 60.0%
AAGGAGGGCCGGAAAACTCG+CGG + chr2_1:67828172-67828191 Msa0219880:CDS 60.0%
GTGAGCCGAATCGAGGGAGT+AGG + chr2_1:67828250-67828269 Msa0219880:CDS 60.0%
CGAGGGAGTAGGCTATGGCT+AGG + chr2_1:67828261-67828280 Msa0219880:CDS 60.0%
GAGGCAGCCAGGGCAATGTA+TGG + chr2_1:67828324-67828343 Msa0219880:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 67826216 67828976 67826216 ID=Msa0219880;Name=Msa0219880
chr2_1 mRNA 67826216 67828976 67826216 ID=Msa0219880-mRNA-1;Parent=Msa0219880;Name=Msa0219880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0.5|1|0|0.5|2|401|197
chr2_1 exon 67826216 67826220 67826216 ID=Msa0219880-mRNA-1:exon:19184;Parent=Msa0219880-mRNA-1
chr2_1 exon 67827987 67828976 67827987 ID=Msa0219880-mRNA-1:exon:19185;Parent=Msa0219880-mRNA-1
chr2_1 CDS 67826216 67826220 67826216 ID=Msa0219880-mRNA-1:cds;Parent=Msa0219880-mRNA-1
chr2_1 CDS 67827987 67828575 67827987 ID=Msa0219880-mRNA-1:cds;Parent=Msa0219880-mRNA-1
chr2_1 three_prime_UTR 67828576 67828976 67828576 ID=Msa0219880-mRNA-1:three_prime_utr;Parent=Msa0219880-mRNA-1
Gene Sequence

>Msa0219880

ATGATTGCTACTTGGATTGAATTGCATATGTTGGCGAAAGCTTGTGAAAAAGGGGATGGATCTAAGTCCCTGGGTAAGATACTGGCAAGATGGAGGGAATATAATGCCCAACTTGATGCCGGCAATGATGTGGATAAGCCTGTTCGCAAAGTTGCAGCCAAAGGATCGAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCGGAAAACTCGCGGTGTAATTATAGAGGTGTGAGACAAAGGACTTGGGGGAAATGGGTTTCTGAAATCCGTGAGCCGAATCGAGGGAGTAGGCTATGGCTAGGTACTTTTACCACTGCCATTGGTGCTGCTCTTGCTTATGACGAGGCAGCCAGGGCAATGTATGGTTCTCGTGCCCGTCTCAACTTTCCTAACGTTTCGGTTACTAGATTCTCTGATGAATCTTCAAACGATTCTCCAGACGCAAATCACTTGGCAGTATCAACAAATACCGAGTCCATGATAATACCAGATAACTCAGGGATAGGAGTAGAAGACAGTAATGATATGGAACCAATGTCCTTATGCTTAAGTATAAAGCAGGAGAATGAGGAAGGTGAGCCGGAGATAAGTTAA
Protein sequence

>Msa0219880

MIATWIELHMLAKACEKGDGSKSLGKILARWREYNAQLDAGNDVDKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVSEIREPNRGSRLWLGTFTTAIGAALAYDEAARAMYGSRARLNFPNVSVTRFSDESSNDSPDANHLAVSTNTESMIIPDNSGIGVEDSNDMEPMSLCLSIKQENEEGEPEIS*