AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1360980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1360980 MtrunA17_Chr3g0130691 97.368 190 5 0 1 190 723 912 2.15e-127 380
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1360980 AT5G63840.1 63.874 191 63 2 3 190 734 921 1.09e-77 249
Msa1360980 AT5G63840.2 63.874 191 63 2 3 190 761 948 1.37e-77 249

Find 66 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCGGCTTGTTTAGTGATTT+AGG 0.187733 tig0017277:-92688 Msa1360980:three_prime_UTR
AACTGGTAGTGGAAAATATT+TGG 0.205694 tig0017277:-92803 Msa1360980:three_prime_UTR
TGTAGCCTACGGACTTAATT+TGG 0.212816 tig0017277:-92621 Msa1360980:three_prime_UTR
ATTGATGATGGCAGCAGTTT+TGG 0.281278 tig0017277:-93125 Msa1360980:CDS
GCGGCTTGTTTAGTGATTTA+GGG 0.286677 tig0017277:-92687 Msa1360980:three_prime_UTR
GTAGACCTGGCACCTACTTC+TGG 0.321946 tig0017277:-93041 Msa1360980:CDS
TGTACACAGTTCCAGTTCTT+AGG 0.349932 tig0017277:+93898 None:intergenic
AATAAAACGTCTATGGATAA+AGG 0.361986 tig0017277:+93088 None:intergenic
TATAGAACTTGGACCGCTTT+GGG 0.372987 tig0017277:-92910 Msa1360980:CDS
CAATTCACCTTCAGCTGCTT+GGG 0.373119 tig0017277:+93151 None:intergenic
GACTGGAACTTCGCCGAAAC+CGG 0.383800 tig0017277:+93790 None:intergenic
ATATAGAACTTGGACCGCTT+TGG 0.389077 tig0017277:-92911 Msa1360980:CDS
GAAGTTCAACTGCAAAAGTT+AGG 0.397348 tig0017277:-92760 Msa1360980:three_prime_UTR
CAAAAGGTTGATATAGAACT+TGG 0.414307 tig0017277:-92921 Msa1360980:CDS
TAACGAGGAAGGACCGGTTT+CGG 0.415029 tig0017277:-93803 Msa1360980:CDS
CCGGTCCTTCCTCGTTAGAA+TGG 0.422717 tig0017277:+93809 None:intergenic
TTAGAATGGTTCCAGCTCTC+TGG 0.423790 tig0017277:+93823 None:intergenic
ATCTTCTGCAACACGGACAT+TGG 0.445693 tig0017277:+92845 None:intergenic
ACAATTCACCTTCAGCTGCT+TGG 0.446099 tig0017277:+93150 None:intergenic
TCTTCTGCAACACGGACATT+GGG 0.451085 tig0017277:+92846 None:intergenic
CAGATAGACTGATGCATGCT+TGG 0.457658 tig0017277:+93944 None:intergenic
ATTAAGTCCGTAGGCTACAT+TGG 0.463411 tig0017277:+92625 None:intergenic
TCGTGGTATGACCTAAGAAC+TGG 0.466818 tig0017277:-93909 Msa1360980:CDS
AGGGGTGACACACAAGTTAG+AGG 0.486618 tig0017277:-93871 Msa1360980:CDS
TTGGACCGCTTTGGGTTCAA+AGG 0.486769 tig0017277:-92902 Msa1360980:CDS
CATCCAATGTTGTTATTGAG+AGG 0.489862 tig0017277:-93001 Msa1360980:CDS
CAACTGCAAAAGTTAGGATA+AGG 0.490396 tig0017277:-92754 Msa1360980:three_prime_UTR
AAGAACTGGAACTGTGTACA+AGG 0.497857 tig0017277:-93895 Msa1360980:CDS
CCATTCTAACGAGGAAGGAC+CGG 0.510010 tig0017277:-93809 Msa1360980:CDS
ATGTCCGTGTTGCAGAAGAT+TGG 0.514436 tig0017277:-92842 Msa1360980:CDS
GTTCCAGCTCTCTGGAAAGC+AGG 0.516788 tig0017277:+93831 None:intergenic
GATTGAGCCCTCAAATCAAA+AGG 0.520485 tig0017277:-92937 Msa1360980:CDS
ATTCCTGCTTTCCAGAGAGC+TGG 0.520525 tig0017277:-93834 Msa1360980:CDS
CATGCATCAGTCTATCTGCC+TGG 0.521383 tig0017277:-93939 Msa1360980:CDS
AGAAAAGAAGTCTTGAAGAA+TGG 0.523378 tig0017277:-92731 Msa1360980:three_prime_UTR
TGGACCGCTTTGGGTTCAAA+GGG 0.525605 tig0017277:-92901 Msa1360980:CDS
ACGGACATTGGGTTTACGTA+TGG 0.526218 tig0017277:+92857 None:intergenic
TCTGGAATGGTCATCTGTGT+TGG 0.532740 tig0017277:-92580 Msa1360980:three_prime_UTR
AATCCTCTCAATAACAACAT+TGG 0.535889 tig0017277:+92998 None:intergenic
GAATTTGAGAGATGTATGCT+TGG 0.538948 tig0017277:-92659 Msa1360980:three_prime_UTR
TTACGTATGGTCATGAAAGC+TGG 0.543961 tig0017277:+92870 None:intergenic
TTCCACCAGAAGTAGGTGCC+AGG 0.547193 tig0017277:+93036 None:intergenic
GGGATCATTTGTCATCTGAC+TGG 0.549218 tig0017277:+93773 None:intergenic
CGTTACCAAATTAAGTCCGT+AGG 0.564634 tig0017277:+92616 None:intergenic
CTGGAACTGTGTACAAGGGA+GGG 0.575434 tig0017277:-93890 Msa1360980:CDS
ATTGAGAGGATTATCGTGCT+AGG 0.577116 tig0017277:-92987 Msa1360980:CDS
CGAACATTTCCACCAGAAGT+AGG 0.577840 tig0017277:+93029 None:intergenic
GACCTGGCACCTACTTCTGG+TGG 0.580907 tig0017277:-93038 Msa1360980:CDS
CTGAAAACCTACCAGAGTGA+AGG 0.587681 tig0017277:+93752 None:intergenic
TGAAAACCTACCAGAGTGAA+GGG 0.588985 tig0017277:+93753 None:intergenic
GGTGAATTGTACATTGATGA+TGG 0.593720 tig0017277:-93137 Msa1360980:CDS
GACAAATGATCCCTTCACTC+TGG 0.595286 tig0017277:-93763 Msa1360980:intron
GAAACTTACTTCTGTAGACC+TGG 0.604421 tig0017277:-93054 Msa1360980:CDS
AATAGTTCCCAAGCAGCTGA+AGG 0.608021 tig0017277:-93158 Msa1360980:CDS
ATCGTGCTAGGTCATGCTCA+TGG 0.617000 tig0017277:-92975 Msa1360980:CDS
TGGAACTGTGTACAAGGGAG+GGG 0.623142 tig0017277:-93889 Msa1360980:CDS
TGTGAATCCAATGTAGCCTA+CGG 0.624723 tig0017277:-92632 Msa1360980:three_prime_UTR
TGGAACCATTCTAACGAGGA+AGG 0.628066 tig0017277:-93814 Msa1360980:CDS
ACACAAGTTAGAGGTTACAG+AGG 0.640736 tig0017277:-93862 Msa1360980:CDS
GTGCACAAATACAATTTCAG+CGG 0.652338 tig0017277:-92706 Msa1360980:three_prime_UTR
TTTGCCCTTTGAACCCAAAG+CGG 0.652469 tig0017277:+92897 None:intergenic
ACTGGAACTGTGTACAAGGG+AGG 0.653156 tig0017277:-93891 Msa1360980:CDS
ATCTGCCTGGAAAACAATCG+TGG 0.653902 tig0017277:-93926 Msa1360980:CDS
TAGTCCAATCTTCTGCAACA+CGG 0.666462 tig0017277:+92838 None:intergenic
AGAACTGGAACTGTGTACAA+GGG 0.709398 tig0017277:-93894 Msa1360980:CDS
GAGCTGGAACCATTCTAACG+AGG 0.725405 tig0017277:-93818 Msa1360980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTCAAAAAGCATATTATAT+AGG + tig0017277:93007-93026 None:intergenic 20.0%
!!! TAACGATAATTTTTATCATC+TGG - tig0017277:93881-93900 Msa1360980:CDS 20.0%
!!! ATAATTTTTATCATCTGGAA+TGG - tig0017277:93886-93905 Msa1360980:CDS 20.0%
!!! TGTCAAAAAGCATATTATAT+AGG + tig0017277:93007-93026 None:intergenic 20.0%
!!! TAACGATAATTTTTATCATC+TGG - tig0017277:93881-93900 Msa1360980:CDS 20.0%
!!! ATAATTTTTATCATCTGGAA+TGG - tig0017277:93886-93905 Msa1360980:CDS 20.0%
! AATATGGAAACAAACAGAAA+AGG + tig0017277:92809-92828 None:intergenic 25.0%
! CAGTAAAAAACCTAGTAATA+TGG + tig0017277:92825-92844 None:intergenic 25.0%
! AATCTACATAGTAGATATGT+GGG + tig0017277:92975-92994 None:intergenic 25.0%
! AAATCTACATAGTAGATATG+TGG + tig0017277:92976-92995 None:intergenic 25.0%
!! TCTACTATGTAGATTTTGAA+TGG - tig0017277:92980-92999 Msa1360980:CDS 25.0%
!! CTACTATGTAGATTTTGAAT+GGG - tig0017277:92981-93000 Msa1360980:CDS 25.0%
! ACTAGTTACAAAAGGTAATA+AGG + tig0017277:93222-93241 None:intergenic 25.0%
! AATAAAACGTCTATGGATAA+AGG + tig0017277:93394-93413 None:intergenic 25.0%
! TTGCAAAAATAAAACGTCTA+TGG + tig0017277:93401-93420 None:intergenic 25.0%
!!! AGACGTTTTATTTTTGCAAA+TGG - tig0017277:93402-93421 Msa1360980:intron 25.0%
!!! GACGTTTTATTTTTGCAAAT+GGG - tig0017277:93403-93422 Msa1360980:intron 25.0%
!!! ATATCAACCTTTTGATTTGA+GGG + tig0017277:93552-93571 None:intergenic 25.0%
!!! TATATCAACCTTTTGATTTG+AGG + tig0017277:93553-93572 None:intergenic 25.0%
!! GACTATCAAAATTTTGTAAC+TGG - tig0017277:93659-93678 Msa1360980:intron 25.0%
! AATATGGAAACAAACAGAAA+AGG + tig0017277:92809-92828 None:intergenic 25.0%
! CAGTAAAAAACCTAGTAATA+TGG + tig0017277:92825-92844 None:intergenic 25.0%
! AATCTACATAGTAGATATGT+GGG + tig0017277:92975-92994 None:intergenic 25.0%
! AAATCTACATAGTAGATATG+TGG + tig0017277:92976-92995 None:intergenic 25.0%
!! TCTACTATGTAGATTTTGAA+TGG - tig0017277:92980-92999 Msa1360980:CDS 25.0%
!! CTACTATGTAGATTTTGAAT+GGG - tig0017277:92981-93000 Msa1360980:CDS 25.0%
! ACTAGTTACAAAAGGTAATA+AGG + tig0017277:93222-93241 None:intergenic 25.0%
! AATAAAACGTCTATGGATAA+AGG + tig0017277:93394-93413 None:intergenic 25.0%
! TTGCAAAAATAAAACGTCTA+TGG + tig0017277:93401-93420 None:intergenic 25.0%
!!! AGACGTTTTATTTTTGCAAA+TGG - tig0017277:93402-93421 Msa1360980:intron 25.0%
!!! GACGTTTTATTTTTGCAAAT+GGG - tig0017277:93403-93422 Msa1360980:intron 25.0%
!!! ATATCAACCTTTTGATTTGA+GGG + tig0017277:93552-93571 None:intergenic 25.0%
!!! TATATCAACCTTTTGATTTG+AGG + tig0017277:93553-93572 None:intergenic 25.0%
!! GACTATCAAAATTTTGTAAC+TGG - tig0017277:93659-93678 Msa1360980:intron 25.0%
!!! TATTTTTCAGGGGAAACATA+TGG + tig0017277:92776-92795 None:intergenic 30.0%
!! CAAGAACAAGTATTTTTCAG+GGG + tig0017277:92786-92805 None:intergenic 30.0%
! GCAAGAACAAGTATTTTTCA+GGG + tig0017277:92787-92806 None:intergenic 30.0%
CTGTTTGTTTCCATATTACT+AGG - tig0017277:92812-92831 Msa1360980:exon 30.0%
TACTGTTGAGTTTCTATTCA+TGG - tig0017277:92840-92859 Msa1360980:CDS 30.0%
AACATCCATATTGTCAACAA+AGG + tig0017277:92866-92885 None:intergenic 30.0%
!! GACAATTTTAGTCTGATTGA+AGG - tig0017277:93023-93042 Msa1360980:CDS 30.0%
!!! CAAATGACTTTTTTCTTGCT+AGG + tig0017277:93107-93126 None:intergenic 30.0%
AACTCAATCATACAGAATAC+AGG + tig0017277:93178-93197 None:intergenic 30.0%
TGTATTCTGTATGATTGAGT+TGG - tig0017277:93177-93196 Msa1360980:intron 30.0%
GTATTCTGTATGATTGAGTT+GGG - tig0017277:93178-93197 Msa1360980:intron 30.0%
TAACTGTCACTAGTTACAAA+AGG + tig0017277:93230-93249 None:intergenic 30.0%
TTTGTAACTAGTGACAGTTA+TGG - tig0017277:93230-93249 Msa1360980:intron 30.0%
! GATTATTATGGTTCTGTGTT+TGG - tig0017277:93283-93302 Msa1360980:intron 30.0%
AATCCTCTCAATAACAACAT+TGG + tig0017277:93484-93503 None:intergenic 30.0%
!! CAAAAGGTTGATATAGAACT+TGG - tig0017277:93558-93577 Msa1360980:intron 30.0%
! CAAAATTTTGTAACTGGTAG+TGG - tig0017277:93665-93684 Msa1360980:intron 30.0%
!! AACTGGTAGTGGAAAATATT+TGG - tig0017277:93676-93695 Msa1360980:intron 30.0%
AGAAAAGAAGTCTTGAAGAA+TGG - tig0017277:93748-93767 Msa1360980:intron 30.0%
!!! TATTTTTCAGGGGAAACATA+TGG + tig0017277:92776-92795 None:intergenic 30.0%
!! CAAGAACAAGTATTTTTCAG+GGG + tig0017277:92786-92805 None:intergenic 30.0%
! GCAAGAACAAGTATTTTTCA+GGG + tig0017277:92787-92806 None:intergenic 30.0%
CTGTTTGTTTCCATATTACT+AGG - tig0017277:92812-92831 Msa1360980:exon 30.0%
TACTGTTGAGTTTCTATTCA+TGG - tig0017277:92840-92859 Msa1360980:CDS 30.0%
AACATCCATATTGTCAACAA+AGG + tig0017277:92866-92885 None:intergenic 30.0%
!! GACAATTTTAGTCTGATTGA+AGG - tig0017277:93023-93042 Msa1360980:CDS 30.0%
!!! CAAATGACTTTTTTCTTGCT+AGG + tig0017277:93107-93126 None:intergenic 30.0%
AACTCAATCATACAGAATAC+AGG + tig0017277:93178-93197 None:intergenic 30.0%
TGTATTCTGTATGATTGAGT+TGG - tig0017277:93177-93196 Msa1360980:intron 30.0%
GTATTCTGTATGATTGAGTT+GGG - tig0017277:93178-93197 Msa1360980:intron 30.0%
TAACTGTCACTAGTTACAAA+AGG + tig0017277:93230-93249 None:intergenic 30.0%
TTTGTAACTAGTGACAGTTA+TGG - tig0017277:93230-93249 Msa1360980:intron 30.0%
! GATTATTATGGTTCTGTGTT+TGG - tig0017277:93283-93302 Msa1360980:intron 30.0%
AATCCTCTCAATAACAACAT+TGG + tig0017277:93484-93503 None:intergenic 30.0%
!! CAAAAGGTTGATATAGAACT+TGG - tig0017277:93558-93577 Msa1360980:intron 30.0%
! CAAAATTTTGTAACTGGTAG+TGG - tig0017277:93665-93684 Msa1360980:intron 30.0%
!! AACTGGTAGTGGAAAATATT+TGG - tig0017277:93676-93695 Msa1360980:intron 30.0%
AGAAAAGAAGTCTTGAAGAA+TGG - tig0017277:93748-93767 Msa1360980:intron 30.0%
! GGCAAGAACAAGTATTTTTC+AGG + tig0017277:92788-92807 None:intergenic 35.0%
ATGGGATGCAACAAATGAAA+AGG + tig0017277:93141-93160 None:intergenic 35.0%
! GCTCGGTGATAAGATTATTA+TGG - tig0017277:93271-93290 Msa1360980:intron 35.0%
GGTGAATTGTACATTGATGA+TGG - tig0017277:93342-93361 Msa1360980:intron 35.0%
!!! AGCAGTTTTGGTTTTCTAGA+AGG - tig0017277:93366-93385 Msa1360980:intron 35.0%
! CATCCAATGTTGTTATTGAG+AGG - tig0017277:93478-93497 Msa1360980:intron 35.0%
GAAGTTCAACTGCAAAAGTT+AGG - tig0017277:93719-93738 Msa1360980:intron 35.0%
CAACTGCAAAAGTTAGGATA+AGG - tig0017277:93725-93744 Msa1360980:intron 35.0%
GTGCACAAATACAATTTCAG+CGG - tig0017277:93773-93792 Msa1360980:CDS 35.0%
GAATTTGAGAGATGTATGCT+TGG - tig0017277:93820-93839 Msa1360980:CDS 35.0%
! GGCAAGAACAAGTATTTTTC+AGG + tig0017277:92788-92807 None:intergenic 35.0%
ATGGGATGCAACAAATGAAA+AGG + tig0017277:93141-93160 None:intergenic 35.0%
! GCTCGGTGATAAGATTATTA+TGG - tig0017277:93271-93290 Msa1360980:intron 35.0%
GGTGAATTGTACATTGATGA+TGG - tig0017277:93342-93361 Msa1360980:intron 35.0%
!!! AGCAGTTTTGGTTTTCTAGA+AGG - tig0017277:93366-93385 Msa1360980:intron 35.0%
! CATCCAATGTTGTTATTGAG+AGG - tig0017277:93478-93497 Msa1360980:intron 35.0%
GAAGTTCAACTGCAAAAGTT+AGG - tig0017277:93719-93738 Msa1360980:intron 35.0%
CAACTGCAAAAGTTAGGATA+AGG - tig0017277:93725-93744 Msa1360980:intron 35.0%
GTGCACAAATACAATTTCAG+CGG - tig0017277:93773-93792 Msa1360980:CDS 35.0%
GAATTTGAGAGATGTATGCT+TGG - tig0017277:93820-93839 Msa1360980:CDS 35.0%
! TCATACCACGATTGTTTTCC+AGG + tig0017277:92561-92580 None:intergenic 40.0%
TGTACACAGTTCCAGTTCTT+AGG + tig0017277:92584-92603 None:intergenic 40.0%
AAGAACTGGAACTGTGTACA+AGG - tig0017277:92584-92603 Msa1360980:three_prime_UTR 40.0%
AGAACTGGAACTGTGTACAA+GGG - tig0017277:92585-92604 Msa1360980:three_prime_UTR 40.0%
ACACAAGTTAGAGGTTACAG+AGG - tig0017277:92617-92636 Msa1360980:three_prime_UTR 40.0%
TGAAAACCTACCAGAGTGAA+GGG + tig0017277:92729-92748 None:intergenic 40.0%
CATGGCCTTTGTTGACAATA+TGG - tig0017277:92858-92877 Msa1360980:CDS 40.0%
AGTTGAATCCTGATGCTTCT+TGG - tig0017277:92892-92911 Msa1360980:CDS 40.0%
TGCAAAACATATTCTCGTCC+TGG + tig0017277:92936-92955 None:intergenic 40.0%
GTTGCATCCCATCCAAAAAA+TGG - tig0017277:93149-93168 Msa1360980:CDS 40.0%
!!! GAATACAGGCAGCCATTTTT+TGG + tig0017277:93164-93183 None:intergenic 40.0%
!! GAGTAGTCTACTAGTTTGCT+CGG - tig0017277:93254-93273 Msa1360980:intron 40.0%
! ATTATGGTTCTGTGTTTGGC+AGG - tig0017277:93287-93306 Msa1360980:intron 40.0%
!!! ATTGATGATGGCAGCAGTTT+TGG - tig0017277:93354-93373 Msa1360980:intron 40.0%
GAAACTTACTTCTGTAGACC+TGG - tig0017277:93425-93444 Msa1360980:intron 40.0%
ATTGAGAGGATTATCGTGCT+AGG - tig0017277:93492-93511 Msa1360980:intron 40.0%
GATTGAGCCCTCAAATCAAA+AGG - tig0017277:93542-93561 Msa1360980:intron 40.0%
ATATAGAACTTGGACCGCTT+TGG - tig0017277:93568-93587 Msa1360980:intron 40.0%
TATAGAACTTGGACCGCTTT+GGG - tig0017277:93569-93588 Msa1360980:intron 40.0%
TTACGTATGGTCATGAAAGC+TGG + tig0017277:93612-93631 None:intergenic 40.0%
TAGTCCAATCTTCTGCAACA+CGG + tig0017277:93644-93663 None:intergenic 40.0%
! AGCGGCTTGTTTAGTGATTT+AGG - tig0017277:93791-93810 Msa1360980:CDS 40.0%
! GCGGCTTGTTTAGTGATTTA+GGG - tig0017277:93792-93811 Msa1360980:CDS 40.0%
TGTGAATCCAATGTAGCCTA+CGG - tig0017277:93847-93866 Msa1360980:CDS 40.0%
ATTAAGTCCGTAGGCTACAT+TGG + tig0017277:93857-93876 None:intergenic 40.0%
TGTAGCCTACGGACTTAATT+TGG - tig0017277:93858-93877 Msa1360980:CDS 40.0%
CGTTACCAAATTAAGTCCGT+AGG + tig0017277:93866-93885 None:intergenic 40.0%
! TCATACCACGATTGTTTTCC+AGG + tig0017277:92561-92580 None:intergenic 40.0%
TGTACACAGTTCCAGTTCTT+AGG + tig0017277:92584-92603 None:intergenic 40.0%
AAGAACTGGAACTGTGTACA+AGG - tig0017277:92584-92603 Msa1360980:three_prime_UTR 40.0%
AGAACTGGAACTGTGTACAA+GGG - tig0017277:92585-92604 Msa1360980:three_prime_UTR 40.0%
ACACAAGTTAGAGGTTACAG+AGG - tig0017277:92617-92636 Msa1360980:three_prime_UTR 40.0%
TGAAAACCTACCAGAGTGAA+GGG + tig0017277:92729-92748 None:intergenic 40.0%
CATGGCCTTTGTTGACAATA+TGG - tig0017277:92858-92877 Msa1360980:CDS 40.0%
AGTTGAATCCTGATGCTTCT+TGG - tig0017277:92892-92911 Msa1360980:CDS 40.0%
TGCAAAACATATTCTCGTCC+TGG + tig0017277:92936-92955 None:intergenic 40.0%
GTTGCATCCCATCCAAAAAA+TGG - tig0017277:93149-93168 Msa1360980:CDS 40.0%
!!! GAATACAGGCAGCCATTTTT+TGG + tig0017277:93164-93183 None:intergenic 40.0%
!! GAGTAGTCTACTAGTTTGCT+CGG - tig0017277:93254-93273 Msa1360980:intron 40.0%
! ATTATGGTTCTGTGTTTGGC+AGG - tig0017277:93287-93306 Msa1360980:intron 40.0%
!!! ATTGATGATGGCAGCAGTTT+TGG - tig0017277:93354-93373 Msa1360980:intron 40.0%
GAAACTTACTTCTGTAGACC+TGG - tig0017277:93425-93444 Msa1360980:intron 40.0%
ATTGAGAGGATTATCGTGCT+AGG - tig0017277:93492-93511 Msa1360980:intron 40.0%
GATTGAGCCCTCAAATCAAA+AGG - tig0017277:93542-93561 Msa1360980:intron 40.0%
ATATAGAACTTGGACCGCTT+TGG - tig0017277:93568-93587 Msa1360980:intron 40.0%
TATAGAACTTGGACCGCTTT+GGG - tig0017277:93569-93588 Msa1360980:intron 40.0%
TTACGTATGGTCATGAAAGC+TGG + tig0017277:93612-93631 None:intergenic 40.0%
TAGTCCAATCTTCTGCAACA+CGG + tig0017277:93644-93663 None:intergenic 40.0%
! AGCGGCTTGTTTAGTGATTT+AGG - tig0017277:93791-93810 Msa1360980:CDS 40.0%
! GCGGCTTGTTTAGTGATTTA+GGG - tig0017277:93792-93811 Msa1360980:CDS 40.0%
TGTGAATCCAATGTAGCCTA+CGG - tig0017277:93847-93866 Msa1360980:CDS 40.0%
ATTAAGTCCGTAGGCTACAT+TGG + tig0017277:93857-93876 None:intergenic 40.0%
TGTAGCCTACGGACTTAATT+TGG - tig0017277:93858-93877 Msa1360980:CDS 40.0%
CGTTACCAAATTAAGTCCGT+AGG + tig0017277:93866-93885 None:intergenic 40.0%
CAGATAGACTGATGCATGCT+TGG + tig0017277:92538-92557 None:intergenic 45.0%
ATCTGCCTGGAAAACAATCG+TGG - tig0017277:92553-92572 Msa1360980:three_prime_UTR 45.0%
TCGTGGTATGACCTAAGAAC+TGG - tig0017277:92570-92589 Msa1360980:three_prime_UTR 45.0%
TTAGAATGGTTCCAGCTCTC+TGG + tig0017277:92659-92678 None:intergenic 45.0%
TGGAACCATTCTAACGAGGA+AGG - tig0017277:92665-92684 Msa1360980:three_prime_UTR 45.0%
GGGATCATTTGTCATCTGAC+TGG + tig0017277:92709-92728 None:intergenic 45.0%
GACAAATGATCCCTTCACTC+TGG - tig0017277:92716-92735 Msa1360980:three_prime_UTR 45.0%
AATGATCCCTTCACTCTGGT+AGG - tig0017277:92720-92739 Msa1360980:three_prime_UTR 45.0%
CTGAAAACCTACCAGAGTGA+AGG + tig0017277:92730-92749 None:intergenic 45.0%
! CTTCACTCTGGTAGGTTTTC+AGG - tig0017277:92728-92747 Msa1360980:three_prime_UTR 45.0%
!!! CAGGCAGCCATTTTTTGGAT+GGG + tig0017277:93159-93178 None:intergenic 45.0%
!!! ACAGGCAGCCATTTTTTGGA+TGG + tig0017277:93160-93179 None:intergenic 45.0%
AATAGTTCCCAAGCAGCTGA+AGG - tig0017277:93321-93340 Msa1360980:intron 45.0%
CAATTCACCTTCAGCTGCTT+GGG + tig0017277:93331-93350 None:intergenic 45.0%
ACAATTCACCTTCAGCTGCT+TGG + tig0017277:93332-93351 None:intergenic 45.0%
CGAACATTTCCACCAGAAGT+AGG + tig0017277:93453-93472 None:intergenic 45.0%
TTTGCCCTTTGAACCCAAAG+CGG + tig0017277:93585-93604 None:intergenic 45.0%
ACGGACATTGGGTTTACGTA+TGG + tig0017277:93625-93644 None:intergenic 45.0%
TCTTCTGCAACACGGACATT+GGG + tig0017277:93636-93655 None:intergenic 45.0%
ATCTTCTGCAACACGGACAT+TGG + tig0017277:93637-93656 None:intergenic 45.0%
ATGTCCGTGTTGCAGAAGAT+TGG - tig0017277:93637-93656 Msa1360980:intron 45.0%
! TCTGGAATGGTCATCTGTGT+TGG - tig0017277:93899-93918 Msa1360980:CDS 45.0%
CAGATAGACTGATGCATGCT+TGG + tig0017277:92538-92557 None:intergenic 45.0%
ATCTGCCTGGAAAACAATCG+TGG - tig0017277:92553-92572 Msa1360980:three_prime_UTR 45.0%
TCGTGGTATGACCTAAGAAC+TGG - tig0017277:92570-92589 Msa1360980:three_prime_UTR 45.0%
TTAGAATGGTTCCAGCTCTC+TGG + tig0017277:92659-92678 None:intergenic 45.0%
TGGAACCATTCTAACGAGGA+AGG - tig0017277:92665-92684 Msa1360980:three_prime_UTR 45.0%
GGGATCATTTGTCATCTGAC+TGG + tig0017277:92709-92728 None:intergenic 45.0%
GACAAATGATCCCTTCACTC+TGG - tig0017277:92716-92735 Msa1360980:three_prime_UTR 45.0%
AATGATCCCTTCACTCTGGT+AGG - tig0017277:92720-92739 Msa1360980:three_prime_UTR 45.0%
CTGAAAACCTACCAGAGTGA+AGG + tig0017277:92730-92749 None:intergenic 45.0%
! CTTCACTCTGGTAGGTTTTC+AGG - tig0017277:92728-92747 Msa1360980:three_prime_UTR 45.0%
!!! CAGGCAGCCATTTTTTGGAT+GGG + tig0017277:93159-93178 None:intergenic 45.0%
!!! ACAGGCAGCCATTTTTTGGA+TGG + tig0017277:93160-93179 None:intergenic 45.0%
AATAGTTCCCAAGCAGCTGA+AGG - tig0017277:93321-93340 Msa1360980:intron 45.0%
CAATTCACCTTCAGCTGCTT+GGG + tig0017277:93331-93350 None:intergenic 45.0%
ACAATTCACCTTCAGCTGCT+TGG + tig0017277:93332-93351 None:intergenic 45.0%
CGAACATTTCCACCAGAAGT+AGG + tig0017277:93453-93472 None:intergenic 45.0%
TTTGCCCTTTGAACCCAAAG+CGG + tig0017277:93585-93604 None:intergenic 45.0%
ACGGACATTGGGTTTACGTA+TGG + tig0017277:93625-93644 None:intergenic 45.0%
TCTTCTGCAACACGGACATT+GGG + tig0017277:93636-93655 None:intergenic 45.0%
ATCTTCTGCAACACGGACAT+TGG + tig0017277:93637-93656 None:intergenic 45.0%
ATGTCCGTGTTGCAGAAGAT+TGG - tig0017277:93637-93656 Msa1360980:intron 45.0%
! TCTGGAATGGTCATCTGTGT+TGG - tig0017277:93899-93918 Msa1360980:CDS 45.0%
CATGCATCAGTCTATCTGCC+TGG - tig0017277:92540-92559 Msa1360980:three_prime_UTR 50.0%
ACTGGAACTGTGTACAAGGG+AGG - tig0017277:92588-92607 Msa1360980:three_prime_UTR 50.0%
CTGGAACTGTGTACAAGGGA+GGG - tig0017277:92589-92608 Msa1360980:three_prime_UTR 50.0%
TGGAACTGTGTACAAGGGAG+GGG - tig0017277:92590-92609 Msa1360980:three_prime_UTR 50.0%
AGGGGTGACACACAAGTTAG+AGG - tig0017277:92608-92627 Msa1360980:three_prime_UTR 50.0%
ATTCCTGCTTTCCAGAGAGC+TGG - tig0017277:92645-92664 Msa1360980:three_prime_UTR 50.0%
GAGCTGGAACCATTCTAACG+AGG - tig0017277:92661-92680 Msa1360980:three_prime_UTR 50.0%
CCATTCTAACGAGGAAGGAC+CGG - tig0017277:92670-92689 Msa1360980:three_prime_UTR 50.0%
! TAACGAGGAAGGACCGGTTT+CGG - tig0017277:92676-92695 Msa1360980:three_prime_UTR 50.0%
!! GCATGATGCCAAGAAGCATC+AGG + tig0017277:92903-92922 None:intergenic 50.0%
GATGTACACACATGCAGGCA+CGG + tig0017277:93085-93104 None:intergenic 50.0%
GCTAGGATGTACACACATGC+AGG + tig0017277:93090-93109 None:intergenic 50.0%
!! TTGAGTTGGGAAATGCTGCG+TGG - tig0017277:93191-93210 Msa1360980:intron 50.0%
ATCGTGCTAGGTCATGCTCA+TGG - tig0017277:93504-93523 Msa1360980:intron 50.0%
! TTGGACCGCTTTGGGTTCAA+AGG - tig0017277:93577-93596 Msa1360980:intron 50.0%
! TGGACCGCTTTGGGTTCAAA+GGG - tig0017277:93578-93597 Msa1360980:intron 50.0%
CATGCATCAGTCTATCTGCC+TGG - tig0017277:92540-92559 Msa1360980:three_prime_UTR 50.0%
ACTGGAACTGTGTACAAGGG+AGG - tig0017277:92588-92607 Msa1360980:three_prime_UTR 50.0%
CTGGAACTGTGTACAAGGGA+GGG - tig0017277:92589-92608 Msa1360980:three_prime_UTR 50.0%
TGGAACTGTGTACAAGGGAG+GGG - tig0017277:92590-92609 Msa1360980:three_prime_UTR 50.0%
AGGGGTGACACACAAGTTAG+AGG - tig0017277:92608-92627 Msa1360980:three_prime_UTR 50.0%
ATTCCTGCTTTCCAGAGAGC+TGG - tig0017277:92645-92664 Msa1360980:three_prime_UTR 50.0%
GAGCTGGAACCATTCTAACG+AGG - tig0017277:92661-92680 Msa1360980:three_prime_UTR 50.0%
CCATTCTAACGAGGAAGGAC+CGG - tig0017277:92670-92689 Msa1360980:three_prime_UTR 50.0%
! TAACGAGGAAGGACCGGTTT+CGG - tig0017277:92676-92695 Msa1360980:three_prime_UTR 50.0%
!! GCATGATGCCAAGAAGCATC+AGG + tig0017277:92903-92922 None:intergenic 50.0%
GATGTACACACATGCAGGCA+CGG + tig0017277:93085-93104 None:intergenic 50.0%
GCTAGGATGTACACACATGC+AGG + tig0017277:93090-93109 None:intergenic 50.0%
!! TTGAGTTGGGAAATGCTGCG+TGG - tig0017277:93191-93210 Msa1360980:intron 50.0%
ATCGTGCTAGGTCATGCTCA+TGG - tig0017277:93504-93523 Msa1360980:intron 50.0%
! TTGGACCGCTTTGGGTTCAA+AGG - tig0017277:93577-93596 Msa1360980:intron 50.0%
! TGGACCGCTTTGGGTTCAAA+GGG - tig0017277:93578-93597 Msa1360980:intron 50.0%
! GTTCCAGCTCTCTGGAAAGC+AGG + tig0017277:92651-92670 None:intergenic 55.0%
CCGGTCCTTCCTCGTTAGAA+TGG + tig0017277:92673-92692 None:intergenic 55.0%
GACTGGAACTTCGCCGAAAC+CGG + tig0017277:92692-92711 None:intergenic 55.0%
CATCATGCCTTCAGCAGTCC+AGG - tig0017277:92915-92934 Msa1360980:CDS 55.0%
TTCTCGTCCTGGACTGCTGA+AGG + tig0017277:92925-92944 None:intergenic 55.0%
GTAGACCTGGCACCTACTTC+TGG - tig0017277:93438-93457 Msa1360980:intron 55.0%
TTCCACCAGAAGTAGGTGCC+AGG + tig0017277:93446-93465 None:intergenic 55.0%
! GTTCCAGCTCTCTGGAAAGC+AGG + tig0017277:92651-92670 None:intergenic 55.0%
CCGGTCCTTCCTCGTTAGAA+TGG + tig0017277:92673-92692 None:intergenic 55.0%
GACTGGAACTTCGCCGAAAC+CGG + tig0017277:92692-92711 None:intergenic 55.0%
CATCATGCCTTCAGCAGTCC+AGG - tig0017277:92915-92934 Msa1360980:CDS 55.0%
TTCTCGTCCTGGACTGCTGA+AGG + tig0017277:92925-92944 None:intergenic 55.0%
GTAGACCTGGCACCTACTTC+TGG - tig0017277:93438-93457 Msa1360980:intron 55.0%
TTCCACCAGAAGTAGGTGCC+AGG + tig0017277:93446-93465 None:intergenic 55.0%
GACCTGGCACCTACTTCTGG+TGG - tig0017277:93441-93460 Msa1360980:intron 60.0%
GACCTGGCACCTACTTCTGG+TGG - tig0017277:93441-93460 Msa1360980:intron 60.0%
Chromosome Type Strat End Strand Name
tig0017277 gene 92534 93967 92534 ID=Msa1360980;Name=Msa1360980
tig0017277 mRNA 92534 93967 92534 ID=Msa1360980-mRNA-1;Parent=Msa1360980;Name=Msa1360980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|290|190
tig0017277 exon 92534 93192 92534 ID=Msa1360980-mRNA-1:exon:12179;Parent=Msa1360980-mRNA-1
tig0017277 exon 93764 93967 93764 ID=Msa1360980-mRNA-1:exon:12178;Parent=Msa1360980-mRNA-1
tig0017277 CDS 93764 93967 93764 ID=Msa1360980-mRNA-1:cds;Parent=Msa1360980-mRNA-1
tig0017277 CDS 92824 93192 92824 ID=Msa1360980-mRNA-1:cds;Parent=Msa1360980-mRNA-1
tig0017277 three_prime_UTR 92534 92823 92534 ID=Msa1360980-mRNA-1:three_prime_utr;Parent=Msa1360980-mRNA-1
Gene Sequence

>Msa1360980

GCCAAGCATGCATCAGTCTATCTGCCTGGAAAACAATCGTGGTATGACCTAAGAACTGGAACTGTGTACAAGGGAGGGGTGACACACAAGTTAGAGGTTACAGAGGAGAGCATTCCTGCTTTCCAGAGAGCTGGAACCATTCTAACGAGGAAGGACCGGTTTCGGCGAAGTTCCAGTCAGATGACAAATGATCCCTTCACTCTGGTTGTAGCTCTGAATAGTTCCCAAGCAGCTGAAGGTGAATTGTACATTGATGATGGCAGCAGTTTTGGTTTTCTAGAAGGTGCCTTTATCCATAGACGTTTTATTTTTGCAAATGGGAAACTTACTTCTGTAGACCTGGCACCTACTTCTGGTGGAAATGTTCGTCATACATCCAATGTTGTTATTGAGAGGATTATCGTGCTAGGTCATGCTCATGGCTCAAAGAATGCACTGATTGAGCCCTCAAATCAAAAGGTTGATATAGAACTTGGACCGCTTTGGGTTCAAAGGGCAAATTCACCAGCTTTCATGACCATACGTAAACCCAATGTCCGTGTTGCAGAAGATTGGACTATCAAAATTTTGTAA

Protein sequence

>Msa1360980

AKHASVYLPGKQSWYDLRTGTVYKGGVTHKLEVTEESIPAFQRAGTILTRKDRFRRSSSQMTNDPFTLVVALNSSQAAEGELYIDDGSSFGFLEGAFIHRRFIFANGKLTSVDLAPTSGGNVRHTSNVVIERIIVLGHAHGSKNALIEPSNQKVDIELGPLWVQRANSPAFMTIRKPNVRVAEDWTIKIL*