AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0572360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572360 MtrunA17_Chr8g0387781 95.816 239 10 0 1 239 1 239 3.96e-168 463
Msa0572360 MtrunA17_Chr5g0396971 78.333 240 42 1 1 240 1 230 2.02e-133 375
Msa0572360 MtrunA17_Chr4g0037391 68.398 231 61 2 1 229 1 221 1.10e-108 313
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572360 AT4G11150.1 72.996 237 54 1 1 237 1 227 1.08e-121 345
Msa0572360 AT1G64200.1 71.130 239 65 1 1 239 1 235 1.16e-119 340
Msa0572360 AT1G64200.2 70.996 231 63 1 1 231 1 227 3.95e-115 329
Msa0572360 AT3G08560.1 63.445 238 75 2 1 236 1 228 3.18e-101 294
Msa0572360 AT1G64200.3 69.792 192 54 1 1 192 1 188 4.20e-90 264

Find 53 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATATAAGTTTCACCTTGA+TGG 0.295071 4_1:-75279330 Msa0572360:three_prime_UTR
TCTAAAAGATCTCATTGTTC+AGG 0.350211 4_1:-75281923 Msa0572360:intron
CATCAAGGTGAAACTTATAT+TGG 0.372050 4_1:+75279331 None:intergenic
CAGATCCGAAAGCAGCTCTT+TGG 0.391740 4_1:-75279515 Msa0572360:CDS
CAGCTCTGGTGGGGTGGTGT+TGG 0.395029 4_1:-75280829 Msa0572360:CDS
CAATGCAGCTGAATGCTTCT+CGG 0.400725 4_1:-75282080 Msa0572360:CDS
TAGTTGCAAATAATATATAT+TGG 0.403454 4_1:-75279294 Msa0572360:three_prime_UTR
TCGATTACATTTGTTGCCCC+TGG 0.437470 4_1:-75279471 Msa0572360:three_prime_UTR
ACATTGAGGATATGTATTCC+AGG 0.438542 4_1:+75279453 None:intergenic
GGCGGATAAATCTCACCATC+TGG 0.473875 4_1:+75283155 None:intergenic
TGTTCTCATATCGTGTATGA+TGG 0.484068 4_1:-75279376 Msa0572360:three_prime_UTR
ATACACGATATGAGAACAAC+AGG 0.485177 4_1:+75279381 None:intergenic
GCTCACATTCAAAAGTTCCT+TGG 0.486133 4_1:+75282002 None:intergenic
CTTGTCCAAAGAGCTGCTTT+CGG 0.496240 4_1:+75279510 None:intergenic
GTGGTGTTGGCTTCTCGTGA+TGG 0.512785 4_1:-75280816 Msa0572360:CDS
ACAAAACTCACGAACCCTAC+TGG 0.514001 4_1:-75281252 Msa0572360:intron
CAGGAAAACAAGTTCGTCAA+TGG 0.514811 4_1:+75283226 None:intergenic
AATGAAAGAAGTTGCAGCCA+AGG 0.517165 4_1:-75282019 Msa0572360:CDS
AAATACTCTTGATGCACGGC+TGG 0.517377 4_1:-75280778 Msa0572360:CDS
CAATATCGAGAAGCTTCAGT+TGG 0.524663 4_1:-75282963 Msa0572360:CDS
TGGAAAATTCAGCTCTGGTG+GGG 0.526027 4_1:-75280838 Msa0572360:intron
CTTCTGTCTTGTTGAGATGT+CGG 0.530658 4_1:-75281405 Msa0572360:CDS
TGTGGAAAATTCAGCTCTGG+TGG 0.539041 4_1:-75280840 Msa0572360:intron
TTCTCATATCGTGTATGATG+GGG 0.542615 4_1:-75279374 Msa0572360:three_prime_UTR
TTGTGGTCAACAATGATCTC+TGG 0.546406 4_1:+75281304 None:intergenic
GAACATGAACTTTACCAGTA+GGG 0.549069 4_1:+75281238 None:intergenic
TTACATAAGCAATGACATTG+AGG 0.549681 4_1:+75279439 None:intergenic
AAAATTCAGCTCTGGTGGGG+TGG 0.550856 4_1:-75280835 Msa0572360:intron
TATCTTCAACACGGTGATGA+CGG 0.556951 4_1:+75281980 None:intergenic
TGTGCTGGATGCAGCTGCAC+AGG 0.558648 4_1:-75281356 Msa0572360:CDS
GTTCTCATATCGTGTATGAT+GGG 0.562196 4_1:-75279375 Msa0572360:three_prime_UTR
CATTGAGGATATGTATTCCA+GGG 0.567671 4_1:+75279454 None:intergenic
GATCTCTCTCTCTGCTGAAG+AGG 0.568633 4_1:-75283107 Msa0572360:intron
TCGGAAACATGACGTGCACT+TGG 0.572529 4_1:-75281386 Msa0572360:CDS
AACAGTAAACATCACAACAT+TGG 0.572592 4_1:+75279262 None:intergenic
ATATATTATTTGCAACTAGT+CGG 0.582033 4_1:+75279299 None:intergenic
CGACATCTCAACAAGACAGA+AGG 0.583156 4_1:+75281406 None:intergenic
GCACTTGGTAGCACATGTGC+TGG 0.596057 4_1:-75281371 Msa0572360:CDS
GTGGAAAATTCAGCTCTGGT+GGG 0.597030 4_1:-75280839 Msa0572360:intron
TTGTGATGCTTGGGTGCAGG+TGG 0.599639 4_1:+75281271 None:intergenic
CTCTAAGCAAATCCACCAGA+TGG 0.604393 4_1:-75283170 Msa0572360:CDS
AGCAGAGAGAGAGATCTCGC+TGG 0.607582 4_1:+75283114 None:intergenic
AGTCGGAGAAAACACCATCA+AGG 0.635390 4_1:+75279316 None:intergenic
TGGTCAACAATGATCTCTGG+TGG 0.640783 4_1:+75281307 None:intergenic
TGAAACATATCAACTTGAGT+CGG 0.640927 4_1:-75283249 Msa0572360:five_prime_UTR
AGATCAGACAAGAATATGAG+CGG 0.642819 4_1:-75282922 Msa0572360:CDS
TCTCATATCGTGTATGATGG+GGG 0.650986 4_1:-75279373 Msa0572360:three_prime_UTR
GGATAAATCTCACCATCTGG+TGG 0.662922 4_1:+75283158 None:intergenic
CATGTAAAATATCTTCAACA+CGG 0.686965 4_1:+75281971 None:intergenic
GTGAAAATACTCTTGATGCA+CGG 0.687449 4_1:-75280782 Msa0572360:CDS
CAGGTGGAAGATAGACATTG+TGG 0.702848 4_1:+75281287 None:intergenic
ATTGAGGATATGTATTCCAG+GGG 0.705670 4_1:+75279455 None:intergenic
TCTTCTCCGAAAATGAACGA+CGG 0.753333 4_1:-75283199 Msa0572360:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATGTTTAATTTTTTTTTT+TGG - chr4_1:75279939-75279958 Msa0572360:intron 10.0%
!!! TTTTTCAAAAAAAAAAAATC+CGG - chr4_1:75280169-75280188 Msa0572360:intron 10.0%
!! ATCTACAAATAATATAAAAT+TGG + chr4_1:75280736-75280755 None:intergenic 10.0%
!! AAGAAACAAAAAAAAAAAAC+AGG + chr4_1:75279512-75279531 None:intergenic 15.0%
!! ATTTCAGATATTGAATATAT+TGG - chr4_1:75279785-75279804 Msa0572360:intron 15.0%
!! TTCAAATGATAATTATATAC+TGG - chr4_1:75280881-75280900 Msa0572360:intron 15.0%
!!! TATTCTTCTGATATTATTTT+AGG - chr4_1:75280992-75281011 Msa0572360:intron 15.0%
!! AGACTTCTATTTAAATATTA+AGG - chr4_1:75281293-75281312 Msa0572360:CDS 15.0%
!!! ATTTTATGTATTTGGTTTAT+TGG - chr4_1:75282760-75282779 Msa0572360:intron 15.0%
!! TAGTTGCAAATAATATATAT+TGG - chr4_1:75283213-75283232 Msa0572360:five_prime_UTR 15.0%
!!! TTAATTTTTTTTTTTGGCAG+TGG - chr4_1:75279945-75279964 Msa0572360:intron 20.0%
!! TTGATATATTCTAATTTCTG+TGG - chr4_1:75280378-75280397 Msa0572360:intron 20.0%
!!! AGATTTTTGTTTACACTTAT+CGG - chr4_1:75280681-75280700 Msa0572360:intron 20.0%
!! CTAGTATATTCATGAAAAAT+TGG - chr4_1:75280818-75280837 Msa0572360:CDS 20.0%
!! TTAAATATTAAGGAACTGTA+TGG - chr4_1:75281303-75281322 Msa0572360:CDS 20.0%
!!! CATATTATTTTCAACTAGAA+AGG - chr4_1:75281860-75281879 Msa0572360:intron 20.0%
!! GTACCAAAAAAAAAAAAGAA+AGG - chr4_1:75281895-75281914 Msa0572360:intron 20.0%
!! TTGAAATATTGTACGTATTA+AGG - chr4_1:75282015-75282034 Msa0572360:CDS 20.0%
!! TGAAATATTGTACGTATTAA+GGG - chr4_1:75282016-75282035 Msa0572360:CDS 20.0%
!!! ATTCGAAACTTTTGAATTTT+TGG - chr4_1:75282218-75282237 Msa0572360:intron 20.0%
!! TGAACAGAATATAATTTGAT+GGG + chr4_1:75282370-75282389 None:intergenic 20.0%
!!! AGATTATATTTTGTTGACTT+TGG - chr4_1:75282668-75282687 Msa0572360:intron 20.0%
!! ATTGTATAGAATGAAAACTT+TGG - chr4_1:75282693-75282712 Msa0572360:intron 20.0%
!!! ATGAAAACTTTGGTATTTTT+TGG - chr4_1:75282703-75282722 Msa0572360:intron 20.0%
!!! GAAATACTCCATTTTTTTAT+AGG - chr4_1:75283102-75283121 Msa0572360:intron 20.0%
!! ATATATTATTTGCAACTAGT+CGG + chr4_1:75283211-75283230 None:intergenic 20.0%
! AAAGAGAATGATTAGAGAAA+TGG + chr4_1:75279431-75279450 None:intergenic 25.0%
!!! TTTTTTTTGTTTCTTCGTGT+AGG - chr4_1:75279517-75279536 Msa0572360:intron 25.0%
!! TTTTCTTTCGAATTTCAACT+TGG + chr4_1:75279619-75279638 None:intergenic 25.0%
! AATTGGTTGAAATTGAATTC+TGG - chr4_1:75279730-75279749 Msa0572360:intron 25.0%
! CAAAAAACACAATGAACATA+CGG + chr4_1:75280068-75280087 None:intergenic 25.0%
! AAGCAATTGAATGTAATCAA+AGG + chr4_1:75280145-75280164 None:intergenic 25.0%
! TATTTCCAAAATATGATGAG+TGG - chr4_1:75280262-75280281 Msa0572360:intron 25.0%
! CATGTAAAATATCTTCAACA+CGG + chr4_1:75280539-75280558 None:intergenic 25.0%
!! TGTTGAAGATATTTTACATG+TGG - chr4_1:75280539-75280558 Msa0572360:intron 25.0%
!! GTTGAAGATATTTTACATGT+GGG - chr4_1:75280540-75280559 Msa0572360:intron 25.0%
! CTACAAATGATAAAGATACT+TGG + chr4_1:75280663-75280682 None:intergenic 25.0%
!! TTTGAAACAATCAATGAGAA+TGG + chr4_1:75280867-75280886 None:intergenic 25.0%
! TGATAATTATATACTGGCAT+AGG - chr4_1:75280887-75280906 Msa0572360:intron 25.0%
!! CATGCTAACTTCAATTATTT+TGG + chr4_1:75280919-75280938 None:intergenic 25.0%
!!! AGTTAGCATGTTTAATTTTG+TGG - chr4_1:75280929-75280948 Msa0572360:intron 25.0%
!! TTGATTAGTTACACATATTC+TGG - chr4_1:75281372-75281391 Msa0572360:CDS 25.0%
! AATCAAGAGTTTCAAACATA+AGG - chr4_1:75281403-75281422 Msa0572360:CDS 25.0%
! CTGATATCTAATATTAAAGC+AGG + chr4_1:75281625-75281644 None:intergenic 25.0%
!!! CTGCCTTTCTTTTTTTTTTT+TGG + chr4_1:75281901-75281920 None:intergenic 25.0%
! AAGAAAATACACATTGAGTA+AGG + chr4_1:75282169-75282188 None:intergenic 25.0%
!! TTACTCAATGTGTATTTTCT+TGG - chr4_1:75282168-75282187 Msa0572360:intron 25.0%
!! AATTGGTGAAAATGATCTTT+TGG + chr4_1:75282307-75282326 None:intergenic 25.0%
! AATATAATTTGATGGGAAGT+GGG + chr4_1:75282363-75282382 None:intergenic 25.0%
! GTGAACAGAATATAATTTGA+TGG + chr4_1:75282371-75282390 None:intergenic 25.0%
! AAATTATATTCTGTTCACCT+TGG - chr4_1:75282373-75282392 Msa0572360:intron 25.0%
!!! AGGAAAACTTTGGTATTTTT+TGG - chr4_1:75282405-75282424 Msa0572360:intron 25.0%
!!! GTTGTCTCATTTTATTTAGT+TGG - chr4_1:75282454-75282473 Msa0572360:intron 25.0%
!! TTTAGTTGGTTTATTAGTCT+TGG - chr4_1:75282468-75282487 Msa0572360:intron 25.0%
!!! TTAGTTGGTTTATTAGTCTT+GGG - chr4_1:75282469-75282488 Msa0572360:intron 25.0%
!! TTATTGTTTCTTCTGTTATG+TGG - chr4_1:75282596-75282615 Msa0572360:intron 25.0%
!! TATTGTTTCTTCTGTTATGT+GGG - chr4_1:75282597-75282616 Msa0572360:intron 25.0%
!! GTTGTCTCATTTTATGTATT+TGG - chr4_1:75282752-75282771 Msa0572360:intron 25.0%
! AGAAGAAACAAAAAAGAATG+TGG + chr4_1:75282900-75282919 None:intergenic 25.0%
!!! TTTGTTTCTTCTGTTTTATG+TGG - chr4_1:75282908-75282927 Msa0572360:CDS 25.0%
!!! TTGTTTCTTCTGTTTTATGT+GGG - chr4_1:75282909-75282928 Msa0572360:CDS 25.0%
TGAAACATATCAACTTGAGT+CGG - chr4_1:75279258-75279277 Msa0572360:three_prime_UTR 30.0%
ATTACTTTGACATTTGTCTG+TGG - chr4_1:75279707-75279726 Msa0572360:intron 30.0%
TACAACATTGAGATTGTGAT+CGG + chr4_1:75279765-75279784 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + chr4_1:75279990-75280009 None:intergenic 30.0%
TACATGTCAGGTTAAACTTA+AGG - chr4_1:75280234-75280253 Msa0572360:intron 30.0%
! AAGTTCCACTCATCATATTT+TGG + chr4_1:75280270-75280289 None:intergenic 30.0%
! GAACAATGAGATCTTTTAGA+AGG + chr4_1:75280584-75280603 None:intergenic 30.0%
TCTAAAAGATCTCATTGTTC+AGG - chr4_1:75280584-75280603 Msa0572360:intron 30.0%
TGCAAGATCAAACGATAATT+AGG + chr4_1:75280635-75280654 None:intergenic 30.0%
ATGAAAAATTGGAGTGATCA+GGG - chr4_1:75280829-75280848 Msa0572360:CDS 30.0%
TCAATGAGAATGGTTCATTA+AGG + chr4_1:75280857-75280876 None:intergenic 30.0%
GAAGAATAAGTTCATGTAGA+GGG + chr4_1:75280980-75280999 None:intergenic 30.0%
AGAAGAATAAGTTCATGTAG+AGG + chr4_1:75280981-75281000 None:intergenic 30.0%
AAGTTGTATTAGTGTGCATT+TGG - chr4_1:75281461-75281480 Msa0572360:intron 30.0%
AGTTGTATTAGTGTGCATTT+GGG - chr4_1:75281462-75281481 Msa0572360:intron 30.0%
CAACTAATCACATGTTTAGA+TGG + chr4_1:75281598-75281617 None:intergenic 30.0%
AGCATAGCTGATTATATTTG+TGG - chr4_1:75281649-75281668 Msa0572360:intron 30.0%
TGCACAAAAAAAATTACCTC+CGG + chr4_1:75281778-75281797 None:intergenic 30.0%
AAGGTTATTAGTATGCAACA+AGG - chr4_1:75282068-75282087 Msa0572360:CDS 30.0%
AAATGTTAGAAGTTATCAGG+GGG + chr4_1:75282134-75282153 None:intergenic 30.0%
CAAATGTTAGAAGTTATCAG+GGG + chr4_1:75282135-75282154 None:intergenic 30.0%
GCAAATGTTAGAAGTTATCA+GGG + chr4_1:75282136-75282155 None:intergenic 30.0%
!!! AATTTTTGGCTTGAAAACCA+GGG - chr4_1:75282232-75282251 Msa0572360:intron 30.0%
!! TAACGGATTGATGAGAATAT+GGG + chr4_1:75282336-75282355 None:intergenic 30.0%
!! ATAACGGATTGATGAGAATA+TGG + chr4_1:75282337-75282356 None:intergenic 30.0%
ATATAATTTGATGGGAAGTG+GGG + chr4_1:75282362-75282381 None:intergenic 30.0%
GAATATAATTTGATGGGAAG+TGG + chr4_1:75282364-75282383 None:intergenic 30.0%
AAAAAACTACCACATATGTG+TGG - chr4_1:75282510-75282529 Msa0572360:intron 30.0%
GAAGAAACAATAAAACGATG+TGG + chr4_1:75282589-75282608 None:intergenic 30.0%
!!! TTTTTTGGAGTGTCATATGT+AGG - chr4_1:75282718-75282737 Msa0572360:intron 30.0%
ATCTATAGCCAAATCTTCAT+TGG + chr4_1:75282852-75282871 None:intergenic 30.0%
AAAATAAACTGGTTAGCATC+TGG - chr4_1:75282940-75282959 Msa0572360:CDS 30.0%
TTACATAAGCAATGACATTG+AGG + chr4_1:75283071-75283090 None:intergenic 30.0%
CAACAGGTCCTATAAAAAAA+TGG + chr4_1:75283113-75283132 None:intergenic 30.0%
CATCAAGGTGAAACTTATAT+TGG + chr4_1:75283179-75283198 None:intergenic 30.0%
CAATATAAGTTTCACCTTGA+TGG - chr4_1:75283177-75283196 Msa0572360:CDS 30.0%
AACAGTAAACATCACAACAT+TGG + chr4_1:75283248-75283267 None:intergenic 30.0%
GCATTGAAATTTGATCCTCT+CGG - chr4_1:75279474-75279493 Msa0572360:three_prime_UTR 35.0%
AGATCAGACAAGAATATGAG+CGG - chr4_1:75279585-75279604 Msa0572360:intron 35.0%
TTGACATTTGTCTGTGGAAT+TGG - chr4_1:75279713-75279732 Msa0572360:intron 35.0%
ATTTGCCAAAGCTTGATTTC+TGG - chr4_1:75279870-75279889 Msa0572360:intron 35.0%
AATGACCAGAAATCAAGCTT+TGG + chr4_1:75279878-75279897 None:intergenic 35.0%
TGGATCATTATCGTGATGTT+CGG - chr4_1:75279904-75279923 Msa0572360:intron 35.0%
!!! TTTTTTTTTTTGGCAGTGGC+CGG - chr4_1:75279949-75279968 Msa0572360:intron 35.0%
TGCATAAAATATGCAAGGTG+CGG + chr4_1:75279985-75280004 None:intergenic 35.0%
GAATGTAATCAAAGGCAAGT+TGG + chr4_1:75280137-75280156 None:intergenic 35.0%
CATGAAAAATTGGAGTGATC+AGG - chr4_1:75280828-75280847 Msa0572360:CDS 35.0%
TGAAAAATTGGAGTGATCAG+GGG - chr4_1:75280830-75280849 Msa0572360:intron 35.0%
GAACATGAACTTTACCAGTA+GGG + chr4_1:75281272-75281291 None:intergenic 35.0%
AGAACATGAACTTTACCAGT+AGG + chr4_1:75281273-75281292 None:intergenic 35.0%
ACTGTATGGATCTGTTAATC+AGG - chr4_1:75281317-75281336 Msa0572360:CDS 35.0%
CTGTATGGATCTGTTAATCA+GGG - chr4_1:75281318-75281337 Msa0572360:CDS 35.0%
TGCTCAGTCAACTAAAAACA+CGG + chr4_1:75281432-75281451 None:intergenic 35.0%
TAAATCACGACAGTACCATA+TGG - chr4_1:75281493-75281512 Msa0572360:intron 35.0%
ATTTGTGGAAAATTCAGCTC+TGG - chr4_1:75281664-75281683 Msa0572360:intron 35.0%
GTGAAAATACTCTTGATGCA+CGG - chr4_1:75281725-75281744 Msa0572360:intron 35.0%
GTATTAAGGGTAAGATAGCT+GGG - chr4_1:75282029-75282048 Msa0572360:CDS 35.0%
TATTAAGGGTAAGATAGCTG+GGG - chr4_1:75282030-75282049 Msa0572360:CDS 35.0%
CGCAAATGTTAGAAGTTATC+AGG + chr4_1:75282137-75282156 None:intergenic 35.0%
!!! GAATTTTTGGCTTGAAAACC+AGG - chr4_1:75282231-75282250 Msa0572360:intron 35.0%
GAGCAGTATAGCAAATACAA+AGG + chr4_1:75282285-75282304 None:intergenic 35.0%
GAGAATATGGGAGGAATAAT+TGG + chr4_1:75282324-75282343 None:intergenic 35.0%
TCCTGTTTACGAGAATATGT+GGG - chr4_1:75282432-75282451 Msa0572360:intron 35.0%
! TCAAAGGATGATTTGGCAAT+AGG - chr4_1:75282534-75282553 Msa0572360:intron 35.0%
GGTCATATGACAATCAAAGT+TGG - chr4_1:75282555-75282574 Msa0572360:intron 35.0%
TGACAATCAAAGTTGGCAAT+AGG - chr4_1:75282562-75282581 Msa0572360:intron 35.0%
TCATATGTAGGAGAATACGA+GGG - chr4_1:75282730-75282749 Msa0572360:intron 35.0%
!! GGGAAGTGTTGAAAATAAAC+TGG - chr4_1:75282929-75282948 Msa0572360:CDS 35.0%
ATTGAGGATATGTATTCCAG+GGG + chr4_1:75283055-75283074 None:intergenic 35.0%
CATTGAGGATATGTATTCCA+GGG + chr4_1:75283056-75283075 None:intergenic 35.0%
ACATTGAGGATATGTATTCC+AGG + chr4_1:75283057-75283076 None:intergenic 35.0%
ATACACGATATGAGAACAAC+AGG + chr4_1:75283129-75283148 None:intergenic 35.0%
TGTTCTCATATCGTGTATGA+TGG - chr4_1:75283131-75283150 Msa0572360:CDS 35.0%
GTTCTCATATCGTGTATGAT+GGG - chr4_1:75283132-75283151 Msa0572360:CDS 35.0%
TTCTCATATCGTGTATGATG+GGG - chr4_1:75283133-75283152 Msa0572360:CDS 35.0%
CAGGAAAACAAGTTCGTCAA+TGG + chr4_1:75279284-75279303 None:intergenic 40.0%
TCTTCTCCGAAAATGAACGA+CGG - chr4_1:75279308-75279327 Msa0572360:three_prime_UTR 40.0%
! ACATCACCGTCGTTCATTTT+CGG + chr4_1:75279317-75279336 None:intergenic 40.0%
! CTTTTTCTTCAGCTTCTTGG+CGG + chr4_1:75279373-75279392 None:intergenic 40.0%
!! TGGCTTTTTCTTCAGCTTCT+TGG + chr4_1:75279376-75279395 None:intergenic 40.0%
CAATATCGAGAAGCTTCAGT+TGG - chr4_1:75279544-75279563 Msa0572360:intron 40.0%
! TTGTGTCACTATCACATGCA+AGG + chr4_1:75279832-75279851 None:intergenic 40.0%
ACATCACGATAATGATCCAC+TGG + chr4_1:75279903-75279922 None:intergenic 40.0%
!!! TTTTTTTTTTGGCAGTGGCC+GGG - chr4_1:75279950-75279969 Msa0572360:intron 40.0%
CATAAAATATGCAAGGTGCG+GGG + chr4_1:75279983-75280002 None:intergenic 40.0%
GCATAAAATATGCAAGGTGC+GGG + chr4_1:75279984-75280003 None:intergenic 40.0%
TGTAGAACTGACACTTCTGA+TGG - chr4_1:75280089-75280108 Msa0572360:intron 40.0%
!! AATCAAAGGCAAGTTGGTGT+CGG + chr4_1:75280131-75280150 None:intergenic 40.0%
ACTCACTGCCACAAACAATT+GGG + chr4_1:75280404-75280423 None:intergenic 40.0%
TACTCACTGCCACAAACAAT+TGG + chr4_1:75280405-75280424 None:intergenic 40.0%
AATGAAAGAAGTTGCAGCCA+AGG - chr4_1:75280488-75280507 Msa0572360:intron 40.0%
GCTCACATTCAAAAGTTCCT+TGG + chr4_1:75280508-75280527 None:intergenic 40.0%
TATCTTCAACACGGTGATGA+CGG + chr4_1:75280530-75280549 None:intergenic 40.0%
AGTTCATGTAGAGGGAAAGA+GGG + chr4_1:75280972-75280991 None:intergenic 40.0%
AAGTTCATGTAGAGGGAAAG+AGG + chr4_1:75280973-75280992 None:intergenic 40.0%
ACATACTTGTGCATAGAAGG+CGG + chr4_1:75281019-75281038 None:intergenic 40.0%
TCCACATACTTGTGCATAGA+AGG + chr4_1:75281022-75281041 None:intergenic 40.0%
TATGCACAAGTATGTGGACT+AGG - chr4_1:75281024-75281043 Msa0572360:intron 40.0%
! CTTCTGTCTTGTTGAGATGT+CGG - chr4_1:75281102-75281121 Msa0572360:intron 40.0%
!! CAGGAGTATTCTGAAAAAGC+AGG - chr4_1:75281170-75281189 Msa0572360:intron 40.0%
TTGTGGTCAACAATGATCTC+TGG + chr4_1:75281206-75281225 None:intergenic 40.0%
!! TCGTGAGTTTTGTGATGCTT+GGG + chr4_1:75281248-75281267 None:intergenic 40.0%
!! TTCGTGAGTTTTGTGATGCT+TGG + chr4_1:75281249-75281268 None:intergenic 40.0%
TGTAGAGTCGTTTGACCATA+TGG + chr4_1:75281511-75281530 None:intergenic 40.0%
AGTGTTCCGTAAAAAGCTTC+CGG - chr4_1:75281756-75281775 Msa0572360:intron 40.0%
! TTACCTCCGGAAGCTTTTTA+CGG + chr4_1:75281765-75281784 None:intergenic 40.0%
CGTATTAAGGGTAAGATAGC+TGG - chr4_1:75282028-75282047 Msa0572360:CDS 40.0%
! AAAGGTGCAAACAGAGAGAA+GGG + chr4_1:75282267-75282286 None:intergenic 40.0%
TTCTGTTCACCTTGGATATC+TGG - chr4_1:75282381-75282400 Msa0572360:intron 40.0%
TCTGTTCACCTTGGATATCT+GGG - chr4_1:75282382-75282401 Msa0572360:intron 40.0%
GATATCTGGGAGGAAAACTT+TGG - chr4_1:75282395-75282414 Msa0572360:intron 40.0%
GTCCTGTTTACGAGAATATG+TGG - chr4_1:75282431-75282450 Msa0572360:intron 40.0%
ACCCACATATTCTCGTAAAC+AGG + chr4_1:75282436-75282455 None:intergenic 40.0%
TGGGTGATGTTGAAAATGAC+TGG - chr4_1:75282616-75282635 Msa0572360:intron 40.0%
! GAAAATGACTGGTTAGCATC+TGG - chr4_1:75282627-75282646 Msa0572360:intron 40.0%
GTCATATGTAGGAGAATACG+AGG - chr4_1:75282729-75282748 Msa0572360:intron 40.0%
!!! GGTCTTCTGCTATTTTGTCT+TGG - chr4_1:75282781-75282800 Msa0572360:intron 40.0%
CACATGAGTGCAAACATATG+TGG + chr4_1:75282824-75282843 None:intergenic 40.0%
CATATGTTTGCACTCATGTG+TGG - chr4_1:75282824-75282843 Msa0572360:intron 40.0%
TCTCATATCGTGTATGATGG+GGG - chr4_1:75283134-75283153 Msa0572360:CDS 40.0%
! CATTTTCGGAGAAGATCGAC+AGG + chr4_1:75279303-75279322 None:intergenic 45.0%
CTCTAAGCAAATCCACCAGA+TGG - chr4_1:75279337-75279356 Msa0572360:three_prime_UTR 45.0%
GGATAAATCTCACCATCTGG+TGG + chr4_1:75279352-75279371 None:intergenic 45.0%
AGGAGAATTACATTGCCGAG+AGG + chr4_1:75279492-75279511 None:intergenic 45.0%
!! GATTTCTGGTCATTGTCCAG+TGG - chr4_1:75279884-75279903 Msa0572360:intron 45.0%
!!! TTTTTTTTTGGCAGTGGCCG+GGG - chr4_1:75279951-75279970 Msa0572360:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr4_1:75280012-75280031 None:intergenic 45.0%
!! ATGAAGCACTGAGAGAGACA+CGG + chr4_1:75280215-75280234 None:intergenic 45.0%
CTCAGTGCTTCATACATGTC+AGG - chr4_1:75280222-75280241 Msa0572360:intron 45.0%
TTCTGTGGCCCAATTGTTTG+TGG - chr4_1:75280393-75280412 Msa0572360:intron 45.0%
CAATGCAGCTGAATGCTTCT+CGG - chr4_1:75280427-75280446 Msa0572360:intron 45.0%
ATGTAGAGGGAAAGAGGGAA+GGG + chr4_1:75280967-75280986 None:intergenic 45.0%
GCCTTCTATGCACAAGTATG+TGG - chr4_1:75281018-75281037 Msa0572360:intron 45.0%
CGACATCTCAACAAGACAGA+AGG + chr4_1:75281104-75281123 None:intergenic 45.0%
TGGTCAACAATGATCTCTGG+TGG + chr4_1:75281203-75281222 None:intergenic 45.0%
CAGGTGGAAGATAGACATTG+TGG + chr4_1:75281223-75281242 None:intergenic 45.0%
ACAAAACTCACGAACCCTAC+TGG - chr4_1:75281255-75281274 Msa0572360:CDS 45.0%
CGTAAGAAAGCCTTCTCTGA+TGG - chr4_1:75281572-75281591 Msa0572360:intron 45.0%
GTTTAGATGGCCATCAGAGA+AGG + chr4_1:75281585-75281604 None:intergenic 45.0%
! TGTGGAAAATTCAGCTCTGG+TGG - chr4_1:75281667-75281686 Msa0572360:intron 45.0%
! GTGGAAAATTCAGCTCTGGT+GGG - chr4_1:75281668-75281687 Msa0572360:intron 45.0%
! TGGAAAATTCAGCTCTGGTG+GGG - chr4_1:75281669-75281688 Msa0572360:intron 45.0%
AAATACTCTTGATGCACGGC+TGG - chr4_1:75281729-75281748 Msa0572360:intron 45.0%
AAGGTGCAAACAGAGAGAAG+GGG + chr4_1:75282266-75282285 None:intergenic 45.0%
! CAAAGGTGCAAACAGAGAGA+AGG + chr4_1:75282268-75282287 None:intergenic 45.0%
CGGATTGATGAGAATATGGG+AGG + chr4_1:75282333-75282352 None:intergenic 45.0%
! GTTTTCCTCCCAGATATCCA+AGG + chr4_1:75282393-75282412 None:intergenic 45.0%
ACCACATATGTGTGGCTCAA+AGG - chr4_1:75282518-75282537 Msa0572360:intron 45.0%
TCCTTTGAGCCACACATATG+TGG + chr4_1:75282522-75282541 None:intergenic 45.0%
GTGTGGCTCAAAGGATGATT+TGG - chr4_1:75282527-75282546 Msa0572360:intron 45.0%
GTGTGGCTCCAATGAAGATT+TGG - chr4_1:75282841-75282860 Msa0572360:intron 45.0%
! CTTGTCCAAAGAGCTGCTTT+CGG + chr4_1:75283000-75283019 None:intergenic 45.0%
! TCGATTACATTTGTTGCCCC+TGG - chr4_1:75283036-75283055 Msa0572360:intron 45.0%
AGTCGGAGAAAACACCATCA+AGG + chr4_1:75283194-75283213 None:intergenic 45.0%
GGCGGATAAATCTCACCATC+TGG + chr4_1:75279355-75279374 None:intergenic 50.0%
GATCTCTCTCTCTGCTGAAG+AGG - chr4_1:75279400-75279419 Msa0572360:three_prime_UTR 50.0%
! ATCCGGTGTCAACATGTGTC+TGG - chr4_1:75280186-75280205 Msa0572360:intron 50.0%
CACCAGACACATGTTGACAC+CGG + chr4_1:75280191-75280210 None:intergenic 50.0%
CATGTAGAGGGAAAGAGGGA+AGG + chr4_1:75280968-75280987 None:intergenic 50.0%
TCGGAAACATGACGTGCACT+TGG - chr4_1:75281121-75281140 Msa0572360:intron 50.0%
! GTTTTGTGATGCTTGGGTGC+AGG + chr4_1:75281242-75281261 None:intergenic 50.0%
! AAAATTCAGCTCTGGTGGGG+TGG - chr4_1:75281672-75281691 Msa0572360:intron 50.0%
GTTCCGTAAAAAGCTTCCGG+AGG - chr4_1:75281759-75281778 Msa0572360:intron 50.0%
TAAGGGTAAGATAGCTGGGG+AGG - chr4_1:75282033-75282052 Msa0572360:CDS 50.0%
AAGGGTAAGATAGCTGGGGA+GGG - chr4_1:75282034-75282053 Msa0572360:CDS 50.0%
GAGAAGGGGAAAAATCTCCC+TGG + chr4_1:75282252-75282271 None:intergenic 50.0%
GATGGGAAGTGGGGTGATAA+CGG + chr4_1:75282353-75282372 None:intergenic 50.0%
GTTCACCTTGGATATCTGGG+AGG - chr4_1:75282385-75282404 Msa0572360:intron 50.0%
! AAGAGCTGCTTTCGGATCTG+TGG + chr4_1:75282992-75283011 None:intergenic 50.0%
CAGATCCGAAAGCAGCTCTT+TGG - chr4_1:75282992-75283011 Msa0572360:intron 50.0%
AGCAGAGAGAGAGATCTCGC+TGG + chr4_1:75279396-75279415 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr4_1:75280017-75280036 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr4_1:75280014-75280033 Msa0572360:intron 55.0%
! GCACTTGGTAGCACATGTGC+TGG - chr4_1:75281136-75281155 Msa0572360:intron 55.0%
TTGTGATGCTTGGGTGCAGG+TGG + chr4_1:75281239-75281258 None:intergenic 55.0%
!! GTGGTGTTGGCTTCTCGTGA+TGG - chr4_1:75281691-75281710 Msa0572360:intron 55.0%
ATAGCTGGGGAGGGACTTCA+GGG - chr4_1:75282043-75282062 Msa0572360:CDS 55.0%
! TCGTGTATGATGGGGGCATG+TGG - chr4_1:75283141-75283160 Msa0572360:CDS 55.0%
AAGGTGCGGGGTTCAAACCC+CGG + chr4_1:75279971-75279990 None:intergenic 60.0%
TGTGCTGGATGCAGCTGCAC+AGG - chr4_1:75281151-75281170 Msa0572360:intron 60.0%
GATAGCTGGGGAGGGACTTC+AGG - chr4_1:75282042-75282061 Msa0572360:CDS 60.0%
! CAGCTCTGGTGGGGTGGTGT+TGG - chr4_1:75281678-75281697 Msa0572360:intron 65.0%
GGGGAGGGACTTCAGGGCTA+AGG - chr4_1:75282049-75282068 Msa0572360:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 75279257 75283272 75279257 ID=Msa0572360;Name=Msa0572360
chr4_1 mRNA 75279257 75283272 75279257 ID=Msa0572360-mRNA-1;Parent=Msa0572360;Name=Msa0572360-mRNA-1;_AED=0.16;_eAED=0.16;_QI=63|1|1|1|1|1|6|242|240
chr4_1 exon 75279257 75279534 75279257 ID=Msa0572360-mRNA-1:exon:26053;Parent=Msa0572360-mRNA-1
chr4_1 exon 75280749 75280848 75280749 ID=Msa0572360-mRNA-1:exon:26052;Parent=Msa0572360-mRNA-1
chr4_1 exon 75281253 75281449 75281253 ID=Msa0572360-mRNA-1:exon:26051;Parent=Msa0572360-mRNA-1
chr4_1 exon 75281924 75282110 75281924 ID=Msa0572360-mRNA-1:exon:26050;Parent=Msa0572360-mRNA-1
chr4_1 exon 75282890 75282990 75282890 ID=Msa0572360-mRNA-1:exon:26049;Parent=Msa0572360-mRNA-1
chr4_1 exon 75283108 75283272 75283108 ID=Msa0572360-mRNA-1:exon:26048;Parent=Msa0572360-mRNA-1
chr4_1 five_prime_UTR 75283210 75283272 75283210 ID=Msa0572360-mRNA-1:five_prime_utr;Parent=Msa0572360-mRNA-1
chr4_1 CDS 75283108 75283209 75283108 ID=Msa0572360-mRNA-1:cds;Parent=Msa0572360-mRNA-1
chr4_1 CDS 75282890 75282990 75282890 ID=Msa0572360-mRNA-1:cds;Parent=Msa0572360-mRNA-1
chr4_1 CDS 75281924 75282110 75281924 ID=Msa0572360-mRNA-1:cds;Parent=Msa0572360-mRNA-1
chr4_1 CDS 75281253 75281449 75281253 ID=Msa0572360-mRNA-1:cds;Parent=Msa0572360-mRNA-1
chr4_1 CDS 75280749 75280848 75280749 ID=Msa0572360-mRNA-1:cds;Parent=Msa0572360-mRNA-1
chr4_1 CDS 75279499 75279534 75279499 ID=Msa0572360-mRNA-1:cds;Parent=Msa0572360-mRNA-1
chr4_1 three_prime_UTR 75279257 75279498 75279257 ID=Msa0572360-mRNA-1:three_prime_utr;Parent=Msa0572360-mRNA-1
Gene Sequence

>Msa0572360

ATGAACGACGGTGATGTCTCTAAGCAAATCCACCAGATGGTGAGATTTATCCGCCAAGAAGCTGAAGAAAAAGCCAGCGAGATCTCTCTCTCTGCTGAAGAGGAATTCAATATCGAGAAGCTTCAGTTGGTTGAAGCTGAGAAGAAGAAGATCAGACAAGAATATGAGCGGAAAGAGCGCCAAGTTGAAATTCGAAAGAAAATTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAAGATGACATTGTTAATTCAATGAAAGAAGTTGCAGCCAAGGAACTTTTGAATGTGAGCCGTCATCACCGTGTTGAAGATATTTTACATGTGGGAAATCATGAGTACAGAAACCTTCTAAAAGATCTCATTGTTCAGAGTTTGCTAAGACTGAGAGAACCTTCTGTCTTGTTGAGATGTCGGAAACATGACGTGCACTTGGTAGCACATGTGCTGGATGCAGCTGCACAGGAGTATTCTGAAAAAGCAGGTGTTCATCCACCAGAGATCATTGTTGACCACAATGTCTATCTTCCACCTGCACCCAAGCATCACAAAACTCACGAACCCTACTGCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGGCTGGATGTAGTGTTCCGTAAAAAGCTTCCGGAGATCCGAAAGCAGCTCTTTGGACAAGCTGCTGTTTGA

Protein sequence

>Msa0572360

MNDGDVSKQIHQMVRFIRQEAEEKASEISLSAEEEFNIEKLQLVEAEKKKIRQEYERKERQVEIRKKIEYSMQLNASRIKVLQAQDDIVNSMKEVAAKELLNVSRHHRVEDILHVGNHEYRNLLKDLIVQSLLRLREPSVLLRCRKHDVHLVAHVLDAAAQEYSEKAGVHPPEIIVDHNVYLPPAPKHHKTHEPYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQAAV*