AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1434700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1434700 MtrunA17_Chr8g0393241 98.875 800 8 1 1 800 1 799 0.0 1619
Msa1434700 MtrunA17_Chr6g0451081 45.980 796 384 12 13 797 13 773 0.0 705
Msa1434700 MtrunA17_Chr6g0461871 45.558 788 394 11 18 797 22 782 0.0 674
Msa1434700 MtrunA17_Chr3g0128831 43.125 800 420 10 12 797 13 791 0.0 656
Msa1434700 MtrunA17_Chr5g0430731 42.018 783 387 14 23 797 28 751 0.0 600
Msa1434700 MtrunA17_Chr8g0387661 39.949 786 436 11 22 796 28 788 0.0 572
Msa1434700 MtrunA17_Chr5g0413721 37.416 890 424 21 10 797 10 868 0.0 548
Msa1434700 MtrunA17_Chr2g0297291 37.690 788 447 11 13 797 40 786 4.26e-172 515
Msa1434700 MtrunA17_Chr4g0052401 38.383 779 430 14 23 797 52 784 8.54e-169 507
Msa1434700 MtrunA17_Chr4g0055471 34.875 800 477 12 8 800 53 815 4.54e-163 493
Msa1434700 MtrunA17_Chr8g0365001 35.088 798 471 10 8 796 77 836 9.41e-163 493
Msa1434700 MtrunA17_Chr7g0268981 34.919 799 441 15 1 796 47 769 1.26e-156 475
Msa1434700 MtrunA17_Chr2g0279131 34.204 804 472 12 7 796 85 845 1.09e-144 446
Msa1434700 MtrunA17_Chr5g0429991 33.086 807 477 13 7 796 85 845 1.16e-136 426
Msa1434700 MtrunA17_Chr8g0380281 31.790 799 494 13 10 800 27 782 3.71e-136 422
Msa1434700 MtrunA17_Chr5g0430571 39.182 587 277 14 214 797 23 532 1.10e-131 402
Msa1434700 MtrunA17_Chr8g0375411 36.783 628 363 9 7 633 15 609 1.10e-130 405
Msa1434700 MtrunA17_Chr8g0344561 34.951 618 344 10 186 796 2 568 3.95e-123 382
Msa1434700 MtrunA17_Chr8g0344591 37.333 450 254 7 186 630 2 428 4.80e-96 307
Msa1434700 MtrunA17_Chr8g0365031 34.468 470 286 9 213 673 44 500 6.78e-94 304
Msa1434700 MtrunA17_Chr2g0297311 41.748 412 209 6 29 435 58 443 3.95e-91 294
Msa1434700 MtrunA17_Chr5g0413751 55.682 176 78 0 437 612 133 308 1.39e-65 221
Msa1434700 MtrunA17_Chr5g0413751 43.158 95 50 2 80 170 47 141 1.89e-11 66.2
Msa1434700 MtrunA17_Chr2g0297321 35.054 368 202 7 439 797 5 344 6.02e-64 218
Msa1434700 MtrunA17_Chr5g0430551 46.250 160 82 2 21 177 11 169 1.52e-36 135
Msa1434700 MtrunA17_Chr8g0365041 40.331 181 106 2 2 181 44 223 4.83e-35 133
Msa1434700 MtrunA17_Chr8g0344551 38.562 153 90 1 20 172 3 151 9.74e-32 120
Msa1434700 MtrunA17_Chr8g0344581 38.562 153 90 1 20 172 3 151 1.55e-31 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1434700 AT1G70300.1 44.279 804 405 14 10 800 9 782 0.0 684
Msa1434700 AT2G40540.1 43.911 813 402 13 8 797 10 791 0.0 674
Msa1434700 AT2G40540.5 43.911 813 402 13 8 797 10 791 0.0 674
Msa1434700 AT2G40540.4 43.911 813 402 13 8 797 10 791 0.0 674
Msa1434700 AT2G40540.2 43.911 813 402 13 8 797 10 791 0.0 674
Msa1434700 AT2G40540.3 43.911 813 402 13 8 797 10 791 0.0 674
Msa1434700 AT5G14880.1 43.875 800 400 12 13 797 13 778 0.0 654
Msa1434700 AT3G02050.1 45.625 800 379 13 18 797 23 786 0.0 649
Msa1434700 AT4G23640.1 39.272 797 445 12 11 796 3 771 0.0 563
Msa1434700 AT2G30070.1 39.203 778 374 10 23 797 28 709 0.0 561
Msa1434700 AT1G31120.1 36.469 776 439 10 29 797 65 793 1.42e-166 502
Msa1434700 AT4G13420.1 36.143 783 441 11 17 796 55 781 2.39e-166 501
Msa1434700 AT1G60160.1 35.472 795 458 11 9 796 77 823 4.81e-163 494
Msa1434700 AT2G35060.4 36.305 774 438 14 29 797 66 789 3.31e-160 485
Msa1434700 AT2G35060.1 36.305 774 438 14 29 797 66 789 3.31e-160 485
Msa1434700 AT2G35060.3 36.305 774 438 14 29 797 66 789 3.31e-160 485
Msa1434700 AT2G35060.2 36.258 775 438 15 29 797 66 790 1.89e-158 481
Msa1434700 AT4G19960.2 37.339 774 453 10 25 797 62 804 5.23e-154 470
Msa1434700 AT4G19960.3 36.876 781 473 8 25 797 62 830 7.92e-153 468
Msa1434700 AT2G30070.2 37.135 684 334 9 114 797 2 589 1.52e-152 459
Msa1434700 AT4G19960.1 36.582 790 453 11 25 797 62 820 8.82e-150 459
Msa1434700 AT4G33530.1 34.355 783 476 11 18 796 103 851 8.16e-139 432
Msa1434700 AT5G09400.1 33.082 795 490 9 10 796 94 854 6.06e-135 422
Msa1434700 AT4G19960.4 37.265 585 355 6 214 797 10 583 1.35e-123 384
Msa1434700 AT4G33530.2 34.317 644 386 10 156 796 14 623 7.21e-114 359

Find 174 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTGTCATTTCAAATTAT+TGG 0.097572 tig0027586:+48238 Msa1434700:CDS
TAATACCTTGATTGATTTCT+TGG 0.133225 tig0027586:-49950 None:intergenic
CAAATTATTGGAATAGTTTA+TGG 0.171289 tig0027586:+48250 Msa1434700:CDS
TCACTATTTGATATTGTTCT+TGG 0.177064 tig0027586:+48700 Msa1434700:CDS
ATGAGATACCTTTCACTTTC+GGG 0.185728 tig0027586:-51344 None:intergenic
CCCTGCGGCACACATAAAAT+TGG 0.218769 tig0027586:+49603 Msa1434700:CDS
TGCTAGTAGTAGTCCTAAAA+TGG 0.222069 tig0027586:+51736 Msa1434700:CDS
CCCACCTGCTGCGCATAAAA+TGG 0.247149 tig0027586:-49793 None:intergenic
CTCAATGGCCCTTCGTGCTT+TGG 0.254731 tig0027586:-48663 None:intergenic
TTGCTTGATCTATCCGCTTC+TGG 0.258921 tig0027586:+50079 Msa1434700:CDS
GATATTGTGATAATAATATA+AGG 0.265580 tig0027586:+51420 Msa1434700:CDS
ATATTGTTCTTGGCCCTCTT+TGG 0.271760 tig0027586:+48710 Msa1434700:CDS
AAAAGCCAAACAGCAATAAT+TGG 0.277240 tig0027586:-49639 None:intergenic
GCATGCTTTCTGTTATGTTT+TGG 0.280359 tig0027586:+50981 Msa1434700:CDS
CACTAATCATTGCTTTGTAT+TGG 0.284123 tig0027586:+50937 Msa1434700:CDS
TTGGTTCCTGTATGACAATT+GGG 0.284904 tig0027586:+48729 Msa1434700:CDS
TAGACAAGAAGTTATTTCTT+TGG 0.288483 tig0027586:-52125 None:intergenic
GTCATGCTTTCATGGCATTA+TGG 0.288725 tig0027586:+51095 Msa1434700:CDS
GTCAAAAGATGGAGATTATT+AGG 0.292066 tig0027586:+49765 Msa1434700:CDS
TTTGGTTCCTGTATGACAAT+TGG 0.295249 tig0027586:+48728 Msa1434700:CDS
ACTAATCATTGCTTTGTATT+GGG 0.300084 tig0027586:+50938 Msa1434700:CDS
ATTTCAAGGGTAGCTGGAAT+TGG 0.306668 tig0027586:+51197 Msa1434700:CDS
CATTGTCCCGAATACATATA+AGG 0.308500 tig0027586:-48290 None:intergenic
ACGAATTTGAACAGGTATAG+TGG 0.308769 tig0027586:-49729 None:intergenic
ATGTGACTGTCCCAAGAAAT+AGG 0.320049 tig0027586:-51816 None:intergenic
TTGGTATCTAGTTGTCCTTT+TGG 0.329914 tig0027586:+51058 Msa1434700:CDS
ACTGCTCCCTTATATGTATT+CGG 0.332081 tig0027586:+48283 Msa1434700:CDS
CGCAGGGCTGCAGCACGAAC+AGG 0.333248 tig0027586:-49587 None:intergenic
TCCTGCTGCTCATGACTCTA+AGG 0.336816 tig0027586:+48075 Msa1434700:CDS
GAGTGGTAGTGCCTATTTCT+TGG 0.340865 tig0027586:+51805 Msa1434700:CDS
AGTATTGTCCCTACTTTCTT+CGG 0.348739 tig0027586:+50299 Msa1434700:CDS
TATGAGATACCTTTCACTTT+CGG 0.349566 tig0027586:-51345 None:intergenic
GTCTCTCATTAATTAATTCT+AGG 0.349884 tig0027586:+52018 Msa1434700:three_prime_UTR
GGGTCAGAGGCAATGTTTGC+AGG 0.358591 tig0027586:+49913 Msa1434700:intron
CTTGGGACAGTCACATTTAG+TGG 0.358649 tig0027586:+51823 Msa1434700:CDS
TATCGTTGCATTGTGAGATA+TGG 0.370461 tig0027586:+51398 Msa1434700:CDS
TTGCTCCAATTATTGCTGTT+TGG 0.374670 tig0027586:+49634 Msa1434700:CDS
ATCCCAGAAGAAAATATTAT+AGG 0.374775 tig0027586:-49682 None:intergenic
AGCTGGCTGTTATAGTTGCT+TGG 0.383170 tig0027586:-50332 None:intergenic
GTGCTCAAAGCCGATGATAA+AGG 0.386986 tig0027586:+48412 Msa1434700:CDS
CCAGTGTTATCAGCTTCATA+TGG 0.390257 tig0027586:+48867 Msa1434700:intron
CGATGACAGTCATGCTTTCA+TGG 0.391628 tig0027586:+51087 Msa1434700:CDS
CAATACTATGAATACATGTT+TGG 0.391978 tig0027586:-50283 None:intergenic
GAGAAAATCATTGGTGCTAT+AGG 0.397323 tig0027586:+51461 Msa1434700:CDS
TTTCGTTTCTTTGAAAAGAA+TGG 0.402669 tig0027586:+51890 Msa1434700:CDS
TCTGCGTGTGTTATATTGAT+TGG 0.403406 tig0027586:+49564 Msa1434700:CDS
TTCAGAGACATGGTGAAGAT+TGG 0.404906 tig0027586:+50498 Msa1434700:CDS
TGACATTGAATCAATGGTTT+CGG 0.408757 tig0027586:+51511 Msa1434700:CDS
CTGCTCCCTTATATGTATTC+GGG 0.427071 tig0027586:+48284 Msa1434700:CDS
GATGAGTGACATTGAATCAA+TGG 0.427788 tig0027586:+51505 Msa1434700:CDS
TTTCAAGGGTAGCTGGAATT+GGG 0.431440 tig0027586:+51198 Msa1434700:CDS
GGTGATATGCTATGCGGGTC+AGG 0.433632 tig0027586:+50100 Msa1434700:CDS
TGCTAGACATTGGTTAATGA+TGG 0.434347 tig0027586:-50358 None:intergenic
ATAGATGTCAGTCCAGGCCT+TGG 0.434506 tig0027586:+51173 Msa1434700:CDS
AATGTCACTCATCTGTTCAA+TGG 0.442300 tig0027586:-51495 None:intergenic
TTTACATCTCCGATGTCAAC+TGG 0.442324 tig0027586:+50439 Msa1434700:CDS
TCTCAAGAGATTCTTAATCA+TGG 0.442855 tig0027586:+51865 Msa1434700:CDS
AGTGGTAGTGCCTATTTCTT+GGG 0.442863 tig0027586:+51806 Msa1434700:CDS
TGCAATTTCACAAGGGAGCT+TGG 0.443081 tig0027586:+51039 Msa1434700:CDS
TCACTTTCCTCAATTACTGC+TGG 0.445037 tig0027586:-51647 None:intergenic
GTCCAGGCCTTGGGATTTCA+AGG 0.446718 tig0027586:+51183 Msa1434700:CDS
ATCTGTGAGGAAGGAGCTGT+TGG 0.455362 tig0027586:+51763 Msa1434700:CDS
TATTCCTCACGAATTTGAAC+AGG 0.458746 tig0027586:-49737 None:intergenic
CATGTTTCATCATTCATCAA+AGG 0.462722 tig0027586:-51587 None:intergenic
ATGTTTCATCATTCATCAAA+GGG 0.464890 tig0027586:-51586 None:intergenic
GTCCTCACTCCAGCACTCTC+AGG 0.466444 tig0027586:+48758 Msa1434700:CDS
ATAAAATGTGAAAAGAAAGC+TGG 0.467438 tig0027586:-51251 None:intergenic
TCCCTACTTTCTTCGGCTGT+CGG 0.468003 tig0027586:+50306 Msa1434700:CDS
AGGTATCTCATAGGAAGGAT+TGG 0.477155 tig0027586:+51356 Msa1434700:CDS
TATGATTATCAGAACAGAAC+AGG 0.480109 tig0027586:-48031 None:intergenic
ACCCTTGAAATCCCAAGGCC+TGG 0.485489 tig0027586:-51185 None:intergenic
GAGGCAATGTTTGCAGGCCT+AGG 0.489080 tig0027586:+49919 Msa1434700:CDS
TGACATCGGAGATGTAAATC+TGG 0.489377 tig0027586:-50434 None:intergenic
ATTTCATCAAGTGTTGATCA+TGG 0.490098 tig0027586:+51289 Msa1434700:CDS
GAAAGTGAAAGGTATCTCAT+AGG 0.491062 tig0027586:+51347 Msa1434700:CDS
ACAGGACTTGTGTTTCTCAA+TGG 0.493275 tig0027586:-48678 None:intergenic
CTTGGGATTTCAAGGGTAGC+TGG 0.493441 tig0027586:+51191 Msa1434700:CDS
ATATTGTGATAATAATATAA+GGG 0.493754 tig0027586:+51421 Msa1434700:CDS
CGTACCCTCTCCTTTATCAT+CGG 0.494667 tig0027586:-48422 None:intergenic
TAGATGTCAGTCCAGGCCTT+GGG 0.495201 tig0027586:+51174 Msa1434700:CDS
CACTTTCCTCAATTACTGCT+GGG 0.497373 tig0027586:-51646 None:intergenic
CGAATTTGAACAGGTATAGT+GGG 0.498758 tig0027586:-49728 None:intergenic
CATGCTGCTCTTGTAGAAGT+TGG 0.499402 tig0027586:+51944 Msa1434700:CDS
CCTGCGGCACACATAAAATT+GGG 0.499524 tig0027586:+49604 Msa1434700:CDS
GGTATCTCATAGGAAGGATT+GGG 0.500620 tig0027586:+51357 Msa1434700:CDS
ATCAACACTTGATGAAATGC+AGG 0.501496 tig0027586:-51284 None:intergenic
TCAGAGATCCTTGTCAGACT+TGG 0.504330 tig0027586:+48893 Msa1434700:CDS
ATTGTCCCGAATACATATAA+GGG 0.505493 tig0027586:-48289 None:intergenic
ACCTTAGAGTCATGAGCAGC+AGG 0.505650 tig0027586:-48076 None:intergenic
GGAAAGTGATCATACATTGT+TGG 0.507113 tig0027586:+51661 Msa1434700:CDS
TAAAATGTGAAAAGAAAGCT+GGG 0.508339 tig0027586:-51250 None:intergenic
ATAACACACGCAGAGGGAAC+AGG 0.516134 tig0027586:-49555 None:intergenic
TCAGAACAGAACAGGAAGGG+GGG 0.516523 tig0027586:-48023 None:intergenic
TGCGGCCCCAATTGTCATAC+AGG 0.516547 tig0027586:-48735 None:intergenic
GGAATATTGATGTCAAAAGA+TGG 0.518956 tig0027586:+49754 Msa1434700:CDS
AACAATTTAGTGCTAGACAT+TGG 0.524283 tig0027586:-50368 None:intergenic
ACTATGAATACATGTTTGGA+TGG 0.524692 tig0027586:-50279 None:intergenic
CAGAACAGAACAGGAAGGGG+GGG 0.526340 tig0027586:-48022 None:intergenic
ATCGGCTTTGAGCACTATGA+TGG 0.526999 tig0027586:-48404 None:intergenic
TTCAGTCTAGCTGTGACGGT+TGG 0.528040 tig0027586:+50474 Msa1434700:CDS
TGATAGATAGATAGAATCAA+AGG 0.530754 tig0027586:+52080 Msa1434700:three_prime_UTR
GCTAGTAGTAGTCCTAAAAT+GGG 0.535308 tig0027586:+51737 Msa1434700:CDS
TTTCATCGTCACAACATACT+CGG 0.535954 tig0027586:+49155 Msa1434700:CDS
TTGTGTAGAAATGCAAAAGT+TGG 0.539250 tig0027586:+48557 Msa1434700:CDS
GATTAGCCCAGCAGTAATTG+AGG 0.542723 tig0027586:+51640 Msa1434700:CDS
TATCAGAACAGAACAGGAAG+GGG 0.543265 tig0027586:-48025 None:intergenic
AAAACAAGGTGTCAACTGAA+TGG 0.543678 tig0027586:+51147 Msa1434700:CDS
ATTTACACAGACATAGTAGC+AGG 0.543683 tig0027586:+51224 Msa1434700:CDS
CTGTCATCGACACAACCAAA+AGG 0.544019 tig0027586:-51073 None:intergenic
GAACAATATCAAATAGTGAC+AGG 0.547114 tig0027586:-48696 None:intergenic
TCAGTATTAATCTTAGAAGA+AGG 0.549138 tig0027586:-48638 None:intergenic
CTTCTGGTGATATGCTATGC+GGG 0.549853 tig0027586:+50095 Msa1434700:CDS
TCCGACAGCCGAAGAAAGTA+GGG 0.550295 tig0027586:-50307 None:intergenic
TTCCGACAGCCGAAGAAAGT+AGG 0.550320 tig0027586:-50308 None:intergenic
CTGGACCAACTTACGTGGTA+CGG 0.552439 tig0027586:-50177 None:intergenic
TGGCTAATAGATGTCAGTCC+AGG 0.553837 tig0027586:+51167 Msa1434700:CDS
CTTTCGGGAACATGAGGCAC+CGG 0.556705 tig0027586:-51329 None:intergenic
CTAATTGATGCAAGGGAGAG+TGG 0.560075 tig0027586:+51788 Msa1434700:CDS
TACTGATTCCAAAGCACGAA+GGG 0.560127 tig0027586:+48655 Msa1434700:CDS
GAGTTCATAAACAACTTCCT+CGG 0.565549 tig0027586:-48332 None:intergenic
TGGTTCCTGTATGACAATTG+GGG 0.565614 tig0027586:+48730 Msa1434700:CDS
TTGGTTAATGATGGAGAAGC+TGG 0.565734 tig0027586:-50349 None:intergenic
CTTTCACTTTCGGGAACATG+AGG 0.566786 tig0027586:-51335 None:intergenic
CATTAATTAATTCTAGGAGG+AGG 0.573002 tig0027586:+52024 Msa1434700:three_prime_UTR
CTCATGTTCCCGAAAGTGAA+AGG 0.575661 tig0027586:+51336 Msa1434700:CDS
TGTATACCACCTGAGAGTGC+TGG 0.576733 tig0027586:-48767 None:intergenic
TGGTTCTATCACAAGGGAGT+AGG 0.578415 tig0027586:-48580 None:intergenic
ATAGTGGGAAATTCATCAGA+TGG 0.578894 tig0027586:+51551 Msa1434700:CDS
GTTGGAACTAATTGATGCAA+GGG 0.584636 tig0027586:+51781 Msa1434700:CDS
GTGAAAGGTATCTCATAGGA+AGG 0.585522 tig0027586:+51351 Msa1434700:CDS
TGAGTTTGATTTGCAAAACA+AGG 0.593927 tig0027586:+51133 Msa1434700:CDS
TTCATCGTCACAACATACTC+GGG 0.594104 tig0027586:+49156 Msa1434700:CDS
AATGGGAGAATCTGTGAGGA+AGG 0.595349 tig0027586:+51754 Msa1434700:CDS
TCTCATTAATTAATTCTAGG+AGG 0.596868 tig0027586:+52021 Msa1434700:three_prime_UTR
TGTCATACAGGAACCAAAGA+GGG 0.597184 tig0027586:-48723 None:intergenic
CAGCTACCCTTGAAATCCCA+AGG 0.598668 tig0027586:-51190 None:intergenic
GGTCTCATTCAAGTCAATGC+CGG 0.599286 tig0027586:+51310 Msa1434700:CDS
TGTTGGAACTAATTGATGCA+AGG 0.600387 tig0027586:+51780 Msa1434700:CDS
GTGTATGCTGCAATTTCACA+AGG 0.605542 tig0027586:+51031 Msa1434700:CDS
ATTATCAGAACAGAACAGGA+AGG 0.607515 tig0027586:-48027 None:intergenic
GCAGGTTTGGCTATAATATG+TGG 0.608232 tig0027586:+50888 Msa1434700:intron
TGATAATAATATAAGGGACA+CGG 0.608313 tig0027586:+51427 Msa1434700:CDS
TCACATTTAGTGGTTCGTGA+TGG 0.611078 tig0027586:+51833 Msa1434700:CDS
GATAATAATATAAGGGACAC+GGG 0.611099 tig0027586:+51428 Msa1434700:CDS
TCATCAGTGGTTCTATCACA+AGG 0.619268 tig0027586:-48587 None:intergenic
GCATAGCATATCACCAGAAG+CGG 0.619528 tig0027586:-50092 None:intergenic
AGCGCAAGATCTTGAATCCG+AGG 0.620300 tig0027586:+48315 Msa1434700:CDS
ATCAGAACAGAACAGGAAGG+GGG 0.623012 tig0027586:-48024 None:intergenic
TTATCAGAACAGAACAGGAA+GGG 0.626176 tig0027586:-48026 None:intergenic
TCCAGGCCTTGGGATTTCAA+GGG 0.627014 tig0027586:+51184 Msa1434700:CDS
CTGTTCGTGCTGCAGCCCTG+CGG 0.631273 tig0027586:+49588 Msa1434700:CDS
TTGTGATAGAACCACTGATG+AGG 0.635745 tig0027586:+48589 Msa1434700:CDS
ATCAATATAACACACGCAGA+GGG 0.639548 tig0027586:-49561 None:intergenic
GACGGTTGGTTTCAGAGACA+TGG 0.641262 tig0027586:+50488 Msa1434700:CDS
ACTTCTACAAGAGCAGCATG+AGG 0.642823 tig0027586:-51941 None:intergenic
CATCAATAACCAGTTGACAT+CGG 0.643303 tig0027586:-50448 None:intergenic
CTTCTACAAGAGCAGCATGA+GGG 0.644345 tig0027586:-51940 None:intergenic
CACCTGAGAGTGCTGGAGTG+AGG 0.647966 tig0027586:-48760 None:intergenic
CTCACTCCAGCACTCTCAGG+TGG 0.651315 tig0027586:+48761 Msa1434700:CDS
CAAAGCCGATGATAAAGGAG+AGG 0.656962 tig0027586:+48417 Msa1434700:CDS
GCTTCTGGTGATATGCTATG+CGG 0.658421 tig0027586:+50094 Msa1434700:CDS
TTGTCATACAGGAACCAAAG+AGG 0.661921 tig0027586:-48724 None:intergenic
TAACTGTGCCAAGTCTGACA+AGG 0.665484 tig0027586:-48901 None:intergenic
AATCAATATAACACACGCAG+AGG 0.681941 tig0027586:-49562 None:intergenic
AAAGCCGATGATAAAGGAGA+GGG 0.682612 tig0027586:+48418 Msa1434700:CDS
TTAGGACTACTACTAGCAGG+AGG 0.682982 tig0027586:-51731 None:intergenic
TATACCTGTTCAAATTCGTG+AGG 0.684600 tig0027586:+49733 Msa1434700:CDS
GTTCTGATAATCATATCACA+TGG 0.685690 tig0027586:+48039 Msa1434700:exon
CATCAGTGGTTCTATCACAA+GGG 0.691255 tig0027586:-48586 None:intergenic
GAATTTGAACAGGTATAGTG+GGG 0.699929 tig0027586:-49727 None:intergenic
CTAAAATGGGAGAATCTGTG+AGG 0.712297 tig0027586:+51750 Msa1434700:CDS
ATACTGATTCCAAAGCACGA+AGG 0.716209 tig0027586:+48654 Msa1434700:CDS
GAGTGCTGGAGTGAGGACTG+CGG 0.718425 tig0027586:-48753 None:intergenic
TGTATGCTGCAATTTCACAA+GGG 0.732397 tig0027586:+51032 Msa1434700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTCTGAAAAAATAATA+GGG - tig0027586:48200-48219 None:intergenic 10.0%
!!! TTTTATTCTGAAAAAATAAT+AGG - tig0027586:48201-48220 None:intergenic 10.0%
!! ATATTGTGATAATAATATAA+GGG + tig0027586:51421-51440 Msa1434700:CDS 10.0%
!!! TATTTTTTCAGAATAAAAGA+TGG + tig0027586:48203-48222 Msa1434700:intron 15.0%
!! GTAGCTAAAATAATAAATAT+AGG - tig0027586:48959-48978 None:intergenic 15.0%
!!! ATTGTTAATTAGAATTGTTT+TGG + tig0027586:49859-49878 Msa1434700:intron 15.0%
!!! CGATATATTTTATAATCTTT+TGG - tig0027586:51383-51402 None:intergenic 15.0%
!! GATATTGTGATAATAATATA+AGG + tig0027586:51420-51439 Msa1434700:CDS 15.0%
!! CAAATTATTGGAATAGTTTA+TGG + tig0027586:48250-48269 Msa1434700:CDS 20.0%
!! TTCAATGTAGTGAATATAAT+TGG - tig0027586:48499-48518 None:intergenic 20.0%
!!! ATTTATTATTTTAGCTACCA+AGG + tig0027586:48961-48980 Msa1434700:intron 20.0%
!! AAGAAAAGCAGTAAATATAT+TGG - tig0027586:49022-49041 None:intergenic 20.0%
!!! TTTTAGTTTTTGAAATCTGA+TGG + tig0027586:49410-49429 Msa1434700:intron 20.0%
!! AATTCTAATTAACAATCACT+TGG - tig0027586:49855-49874 None:intergenic 20.0%
!!! TTCTAGTTTAATGCAAAAAT+GGG - tig0027586:50608-50627 None:intergenic 20.0%
!!! TTTCTAGTTTAATGCAAAAA+TGG - tig0027586:50609-50628 None:intergenic 20.0%
!!! AAAAGTTGGTAAATTAAACA+GGG + tig0027586:50670-50689 Msa1434700:intron 20.0%
!! CTTGTGATTTGATTAAATTA+AGG + tig0027586:50768-50787 Msa1434700:intron 20.0%
!! TGATTTGATTAAATTAAGGA+TGG + tig0027586:50772-50791 Msa1434700:intron 20.0%
!! TTAAATTAAGGATGGTTATA+TGG + tig0027586:50780-50799 Msa1434700:intron 20.0%
!! TTAATTAAGTTCACAATTTG+TGG + tig0027586:50866-50885 Msa1434700:intron 20.0%
!! CTCTTGTCATTTCAAATTAT+TGG + tig0027586:48238-48257 Msa1434700:CDS 25.0%
!! CTACATTGAAAATATTTTCC+AGG + tig0027586:48509-48528 Msa1434700:intron 25.0%
! TCAGTATTAATCTTAGAAGA+AGG - tig0027586:48641-48660 None:intergenic 25.0%
! TCACTATTTGATATTGTTCT+TGG + tig0027586:48700-48719 Msa1434700:CDS 25.0%
!! GCAGAAAGTATATAAATCTT+AGG - tig0027586:48840-48859 None:intergenic 25.0%
!! TTTTTGTAGAACATTTGAGA+CGG - tig0027586:49185-49204 None:intergenic 25.0%
!! AGCCTATAATATTTTCTTCT+GGG + tig0027586:49680-49699 Msa1434700:CDS 25.0%
! ATCCCAGAAGAAAATATTAT+AGG - tig0027586:49685-49704 None:intergenic 25.0%
!!! GTTAATTAGAATTGTTTTGG+AGG + tig0027586:49862-49881 Msa1434700:intron 25.0%
!! TGATTGATTTCTTGGAAAAA+TGG - tig0027586:49945-49964 None:intergenic 25.0%
!! TTTTTCCAAGAAATCAATCA+AGG + tig0027586:49945-49964 Msa1434700:CDS 25.0%
!! TAATACCTTGATTGATTTCT+TGG - tig0027586:49953-49972 None:intergenic 25.0%
! AATCAATTTACTAGAACTAC+AGG - tig0027586:49991-50010 None:intergenic 25.0%
!!! AAAGGCATCTTAGAAATAAA+GGG - tig0027586:50212-50231 None:intergenic 25.0%
!!! AAAAGGCATCTTAGAAATAA+AGG - tig0027586:50213-50232 None:intergenic 25.0%
! CAATACTATGAATACATGTT+TGG - tig0027586:50286-50305 None:intergenic 25.0%
! ACCAAGAGAAATGAAAAAAA+TGG - tig0027586:50540-50559 None:intergenic 25.0%
! TTTGAGTCCTTAATTTATGA+AGG + tig0027586:50630-50649 Msa1434700:intron 25.0%
! TTGAGTCCTTAATTTATGAA+GGG + tig0027586:50631-50650 Msa1434700:intron 25.0%
! GTCTTAAGAAAATGAAAAGT+TGG + tig0027586:50656-50675 Msa1434700:intron 25.0%
!!! GAAAAGTTGGTAAATTAAAC+AGG + tig0027586:50669-50688 Msa1434700:intron 25.0%
! ACTAATCATTGCTTTGTATT+GGG + tig0027586:50938-50957 Msa1434700:CDS 25.0%
! TAAAATGTGAAAAGAAAGCT+GGG - tig0027586:51253-51272 None:intergenic 25.0%
! ATAAAATGTGAAAAGAAAGC+TGG - tig0027586:51254-51273 None:intergenic 25.0%
! TGATAATAATATAAGGGACA+CGG + tig0027586:51427-51446 Msa1434700:CDS 25.0%
! AGAAGAAAAAATGATGATAG+TGG + tig0027586:51535-51554 Msa1434700:CDS 25.0%
! GAAGAAAAAATGATGATAGT+GGG + tig0027586:51536-51555 Msa1434700:CDS 25.0%
! ATGTTTCATCATTCATCAAA+GGG - tig0027586:51589-51608 None:intergenic 25.0%
! GCAACAAAAGAAAAAAAGTA+CGG + tig0027586:51699-51718 Msa1434700:CDS 25.0%
!! TTTCGTTTCTTTGAAAAGAA+TGG + tig0027586:51890-51909 Msa1434700:CDS 25.0%
! GTCTCTCATTAATTAATTCT+AGG + tig0027586:52018-52037 Msa1434700:three_prime_UTR 25.0%
! TCTCATTAATTAATTCTAGG+AGG + tig0027586:52021-52040 Msa1434700:three_prime_UTR 25.0%
! TGATAGATAGATAGAATCAA+AGG + tig0027586:52080-52099 Msa1434700:three_prime_UTR 25.0%
TATGATTATCAGAACAGAAC+AGG - tig0027586:48034-48053 None:intergenic 30.0%
GTTCTGATAATCATATCACA+TGG + tig0027586:48039-48058 Msa1434700:exon 30.0%
ATTGTCCCGAATACATATAA+GGG - tig0027586:48292-48311 None:intergenic 30.0%
!!! AACTCTTCTCCTTCATTTTT+TGG + tig0027586:48350-48369 Msa1434700:CDS 30.0%
TGTTAGAGTCCAAAAAATGA+AGG - tig0027586:48362-48381 None:intergenic 30.0%
! CATTGAAAATATTTTCCAGG+TGG + tig0027586:48512-48531 Msa1434700:intron 30.0%
TATAAAGCAAAAATACCACC+TGG - tig0027586:48530-48549 None:intergenic 30.0%
TTGTGTAGAAATGCAAAAGT+TGG + tig0027586:48557-48576 Msa1434700:CDS 30.0%
GAACAATATCAAATAGTGAC+AGG - tig0027586:48699-48718 None:intergenic 30.0%
CTTCAGAAAAGAAAATGTCA+TGG - tig0027586:49076-49095 None:intergenic 30.0%
! CATGACATTTTCTTTTCTGA+AGG + tig0027586:49074-49093 Msa1434700:intron 30.0%
CACAATTATCCTCGATAAAT+TGG - tig0027586:49338-49357 None:intergenic 30.0%
AAAAGCCAAACAGCAATAAT+TGG - tig0027586:49642-49661 None:intergenic 30.0%
! GAGCCTATAATATTTTCTTC+TGG + tig0027586:49679-49698 Msa1434700:CDS 30.0%
GGAATATTGATGTCAAAAGA+TGG + tig0027586:49754-49773 Msa1434700:CDS 30.0%
GTCAAAAGATGGAGATTATT+AGG + tig0027586:49765-49784 Msa1434700:CDS 30.0%
TTTAGCAAAGCGACTAAAAA+AGG - tig0027586:50230-50249 None:intergenic 30.0%
ACTATGAATACATGTTTGGA+TGG - tig0027586:50282-50301 None:intergenic 30.0%
AACAATTTAGTGCTAGACAT+TGG - tig0027586:50371-50390 None:intergenic 30.0%
!!! GCCATTTTTTTCATTTCTCT+TGG + tig0027586:50536-50555 Msa1434700:intron 30.0%
AGACTTCCCTTCATAAATTA+AGG - tig0027586:50640-50659 None:intergenic 30.0%
TTAATATATACTACCAGCAC+AGG + tig0027586:50716-50735 Msa1434700:intron 30.0%
AAATCACAAGTACAGTAGTT+CGG - tig0027586:50758-50777 None:intergenic 30.0%
CACTAATCATTGCTTTGTAT+TGG + tig0027586:50937-50956 Msa1434700:CDS 30.0%
AAAAATATGCAACCTCAACA+AGG - tig0027586:51007-51026 None:intergenic 30.0%
! TGTTGAGGTTGCATATTTTT+CGG + tig0027586:51007-51026 Msa1434700:CDS 30.0%
!! TGAGTTTGATTTGCAAAACA+AGG + tig0027586:51133-51152 Msa1434700:CDS 30.0%
!! ATTTCATCAAGTGTTGATCA+TGG + tig0027586:51289-51308 Msa1434700:CDS 30.0%
TATGAGATACCTTTCACTTT+CGG - tig0027586:51348-51367 None:intergenic 30.0%
GATAATAATATAAGGGACAC+GGG + tig0027586:51428-51447 Msa1434700:CDS 30.0%
!! GATTTTGAGGAGAAAATCAT+TGG + tig0027586:51452-51471 Msa1434700:CDS 30.0%
TGACATTGAATCAATGGTTT+CGG + tig0027586:51511-51530 Msa1434700:CDS 30.0%
CATGTTTCATCATTCATCAA+AGG - tig0027586:51590-51609 None:intergenic 30.0%
TCTCAAGAGATTCTTAATCA+TGG + tig0027586:51865-51884 Msa1434700:CDS 30.0%
! CATTAATTAATTCTAGGAGG+AGG + tig0027586:52024-52043 Msa1434700:three_prime_UTR 30.0%
TTATCAGAACAGAACAGGAA+GGG - tig0027586:48029-48048 None:intergenic 35.0%
ATTATCAGAACAGAACAGGA+AGG - tig0027586:48030-48049 None:intergenic 35.0%
AAGAGTGAGACTGAATATGA+TGG - tig0027586:48110-48129 None:intergenic 35.0%
!! AATGATCTTTCTAGTTCCCT+AGG + tig0027586:48148-48167 Msa1434700:intron 35.0%
ACTGCTCCCTTATATGTATT+CGG + tig0027586:48283-48302 Msa1434700:CDS 35.0%
CATTGTCCCGAATACATATA+AGG - tig0027586:48293-48312 None:intergenic 35.0%
GAGTTCATAAACAACTTCCT+CGG - tig0027586:48335-48354 None:intergenic 35.0%
! TTTGGTTCCTGTATGACAAT+TGG + tig0027586:48728-48747 Msa1434700:CDS 35.0%
TTGGTTCCTGTATGACAATT+GGG + tig0027586:48729-48748 Msa1434700:CDS 35.0%
TTTCATCGTCACAACATACT+CGG + tig0027586:49155-49174 Msa1434700:CDS 35.0%
!! ACCAATTGACTCGACATAAA+GGG - tig0027586:49254-49273 None:intergenic 35.0%
!! AATTGGTCGATTTGTGTGTT+TGG + tig0027586:49267-49286 Msa1434700:intron 35.0%
ATTGGATGCATAGTGCTAAT+TGG - tig0027586:49320-49339 None:intergenic 35.0%
ACTATGCATCCAATTTATCG+AGG + tig0027586:49326-49345 Msa1434700:intron 35.0%
! GTATTTAATTTAACCCGCCA+TGG - tig0027586:49364-49383 None:intergenic 35.0%
!! CATGTAGTTTGCTTCTAGTT+TGG + tig0027586:49383-49402 Msa1434700:intron 35.0%
CTGGAAATCAATTGAGCAAA+AGG - tig0027586:49530-49549 None:intergenic 35.0%
ATCAATATAACACACGCAGA+GGG - tig0027586:49564-49583 None:intergenic 35.0%
AATCAATATAACACACGCAG+AGG - tig0027586:49565-49584 None:intergenic 35.0%
TCTGCGTGTGTTATATTGAT+TGG + tig0027586:49564-49583 Msa1434700:CDS 35.0%
! TTGCTCCAATTATTGCTGTT+TGG + tig0027586:49634-49653 Msa1434700:CDS 35.0%
GAATTTGAACAGGTATAGTG+GGG - tig0027586:49730-49749 None:intergenic 35.0%
CGAATTTGAACAGGTATAGT+GGG - tig0027586:49731-49750 None:intergenic 35.0%
ACGAATTTGAACAGGTATAG+TGG - tig0027586:49732-49751 None:intergenic 35.0%
TATACCTGTTCAAATTCGTG+AGG + tig0027586:49733-49752 Msa1434700:CDS 35.0%
TATTCCTCACGAATTTGAAC+AGG - tig0027586:49740-49759 None:intergenic 35.0%
! TCATGCTCTACAAATTTTGC+AGG + tig0027586:49892-49911 Msa1434700:intron 35.0%
! CATGCTCTACAAATTTTGCA+GGG + tig0027586:49893-49912 Msa1434700:intron 35.0%
ATTTCTTGGAAAAATGGCCT+AGG - tig0027586:49939-49958 None:intergenic 35.0%
TTTACTAGAACTACAGGACA+AGG - tig0027586:49985-50004 None:intergenic 35.0%
AGTATTGTCCCTACTTTCTT+CGG + tig0027586:50299-50318 Msa1434700:CDS 35.0%
! TGCTAGACATTGGTTAATGA+TGG - tig0027586:50361-50380 None:intergenic 35.0%
! GTGTGAATGACTTTTACTCT+GGG - tig0027586:50396-50415 None:intergenic 35.0%
! TGTGTGAATGACTTTTACTC+TGG - tig0027586:50397-50416 None:intergenic 35.0%
CACACATCAAAAACGATACA+TGG + tig0027586:50411-50430 Msa1434700:CDS 35.0%
CATCAATAACCAGTTGACAT+CGG - tig0027586:50451-50470 None:intergenic 35.0%
TTAAGTTCACAATTTGTGGC+AGG + tig0027586:50870-50889 Msa1434700:intron 35.0%
! GCATGCTTTCTGTTATGTTT+TGG + tig0027586:50981-51000 Msa1434700:CDS 35.0%
TGTATGCTGCAATTTCACAA+GGG + tig0027586:51032-51051 Msa1434700:CDS 35.0%
! TTGGTATCTAGTTGTCCTTT+TGG + tig0027586:51058-51077 Msa1434700:CDS 35.0%
! AAAACAAGGTGTCAACTGAA+TGG + tig0027586:51147-51166 Msa1434700:CDS 35.0%
ATTTACACAGACATAGTAGC+AGG + tig0027586:51224-51243 Msa1434700:CDS 35.0%
ATCAACACTTGATGAAATGC+AGG - tig0027586:51287-51306 None:intergenic 35.0%
ATGAGATACCTTTCACTTTC+GGG - tig0027586:51347-51366 None:intergenic 35.0%
!! GAAAGTGAAAGGTATCTCAT+AGG + tig0027586:51347-51366 Msa1434700:CDS 35.0%
TATCGTTGCATTGTGAGATA+TGG + tig0027586:51398-51417 Msa1434700:CDS 35.0%
!! GAGAAAATCATTGGTGCTAT+AGG + tig0027586:51461-51480 Msa1434700:CDS 35.0%
AATGTCACTCATCTGTTCAA+TGG - tig0027586:51498-51517 None:intergenic 35.0%
GATGAGTGACATTGAATCAA+TGG + tig0027586:51505-51524 Msa1434700:CDS 35.0%
! ATAGTGGGAAATTCATCAGA+TGG + tig0027586:51551-51570 Msa1434700:CDS 35.0%
GGAAAGTGATCATACATTGT+TGG + tig0027586:51661-51680 Msa1434700:CDS 35.0%
!!! ATTTTAGGACTACTACTAGC+AGG - tig0027586:51737-51756 None:intergenic 35.0%
TGCTAGTAGTAGTCCTAAAA+TGG + tig0027586:51736-51755 Msa1434700:CDS 35.0%
GCTAGTAGTAGTCCTAAAAT+GGG + tig0027586:51737-51756 Msa1434700:CDS 35.0%
TGTTGGAACTAATTGATGCA+AGG + tig0027586:51780-51799 Msa1434700:CDS 35.0%
GTTGGAACTAATTGATGCAA+GGG + tig0027586:51781-51800 Msa1434700:CDS 35.0%
TATCAGAACAGAACAGGAAG+GGG - tig0027586:48028-48047 None:intergenic 40.0%
! GTGAGACTGAATATGATGGA+TGG - tig0027586:48106-48125 None:intergenic 40.0%
GGGAGACAGAAATCATGAAA+AGG - tig0027586:48180-48199 None:intergenic 40.0%
CTGCTCCCTTATATGTATTC+GGG + tig0027586:48284-48303 Msa1434700:CDS 40.0%
AAAGCCGATGATAAAGGAGA+GGG + tig0027586:48418-48437 Msa1434700:CDS 40.0%
! CATCAGTGGTTCTATCACAA+GGG - tig0027586:48589-48608 None:intergenic 40.0%
! TCATCAGTGGTTCTATCACA+AGG - tig0027586:48590-48609 None:intergenic 40.0%
TTGTGATAGAACCACTGATG+AGG + tig0027586:48589-48608 Msa1434700:CDS 40.0%
!! ATACTGATTCCAAAGCACGA+AGG + tig0027586:48654-48673 Msa1434700:CDS 40.0%
!! TACTGATTCCAAAGCACGAA+GGG + tig0027586:48655-48674 Msa1434700:CDS 40.0%
ACAGGACTTGTGTTTCTCAA+TGG - tig0027586:48681-48700 None:intergenic 40.0%
ATATTGTTCTTGGCCCTCTT+TGG + tig0027586:48710-48729 Msa1434700:CDS 40.0%
TGTCATACAGGAACCAAAGA+GGG - tig0027586:48726-48745 None:intergenic 40.0%
TTGTCATACAGGAACCAAAG+AGG - tig0027586:48727-48746 None:intergenic 40.0%
TGGTTCCTGTATGACAATTG+GGG + tig0027586:48730-48749 Msa1434700:CDS 40.0%
AGCTGATAACACTGGTAAAC+AGG - tig0027586:48862-48881 None:intergenic 40.0%
CCATATGAAGCTGATAACAC+TGG - tig0027586:48870-48889 None:intergenic 40.0%
CCAGTGTTATCAGCTTCATA+TGG + tig0027586:48867-48886 Msa1434700:intron 40.0%
TTAGCTACCAAGGATACTAC+TGG + tig0027586:48971-48990 Msa1434700:intron 40.0%
! ACCAAGGATACTACTGGTTA+AGG + tig0027586:48977-48996 Msa1434700:intron 40.0%
TCCTTAACCAGTAGTATCCT+TGG - tig0027586:48981-49000 None:intergenic 40.0%
GTATGTTGTGACGATGAAAC+TGG - tig0027586:49154-49173 None:intergenic 40.0%
TTCATCGTCACAACATACTC+GGG + tig0027586:49156-49175 Msa1434700:CDS 40.0%
TCCCTTTATGTCGAGTCAAT+TGG + tig0027586:49250-49269 Msa1434700:intron 40.0%
!! GACCAATTGACTCGACATAA+AGG - tig0027586:49255-49274 None:intergenic 40.0%
CGAGGATAATTGTGTATCCA+TGG + tig0027586:49344-49363 Msa1434700:intron 40.0%
GGATAATTGTGTATCCATGG+CGG + tig0027586:49347-49366 Msa1434700:intron 40.0%
GATAATTGTGTATCCATGGC+GGG + tig0027586:49348-49367 Msa1434700:intron 40.0%
TATGCTGTAATCATGCTGCA+TGG + tig0027586:49493-49512 Msa1434700:intron 40.0%
CAATTGAGCAAAAGGTCAAG+AGG - tig0027586:49522-49541 None:intergenic 40.0%
!!! GCTGTTTGGCTTTTGTTTGT+TGG + tig0027586:49648-49667 Msa1434700:CDS 40.0%
!! TTGGCTTTTGTTTGTTGGTG+TGG + tig0027586:49653-49672 Msa1434700:CDS 40.0%
!! CTTTTGTTTGTTGGTGTGGT+GGG + tig0027586:49657-49676 Msa1434700:CDS 40.0%
! TACAAATTTTGCAGGGTCAG+AGG + tig0027586:49900-49919 Msa1434700:intron 40.0%
TCTTAGAAATAAAGGGTGGC+AGG - tig0027586:50205-50224 None:intergenic 40.0%
GGCATCTTAGAAATAAAGGG+TGG - tig0027586:50209-50228 None:intergenic 40.0%
! TTGGTTAATGATGGAGAAGC+TGG - tig0027586:50352-50371 None:intergenic 40.0%
TGACATCGGAGATGTAAATC+TGG - tig0027586:50437-50456 None:intergenic 40.0%
TTTACATCTCCGATGTCAAC+TGG + tig0027586:50439-50458 Msa1434700:CDS 40.0%
! GATTTTCAGTCTAGCTGTGA+CGG + tig0027586:50470-50489 Msa1434700:CDS 40.0%
TTCAGAGACATGGTGAAGAT+TGG + tig0027586:50498-50517 Msa1434700:CDS 40.0%
GAACGATCATGCTAACTGAA+TGG - tig0027586:50816-50835 None:intergenic 40.0%
TTCACAATTTGTGGCAGGTT+TGG + tig0027586:50875-50894 Msa1434700:intron 40.0%
GCAGGTTTGGCTATAATATG+TGG + tig0027586:50888-50907 Msa1434700:intron 40.0%
!!! GTTATGTTTTGGCCTTGTTG+AGG + tig0027586:50992-51011 Msa1434700:CDS 40.0%
GTGTATGCTGCAATTTCACA+AGG + tig0027586:51031-51050 Msa1434700:CDS 40.0%
GTCATGCTTTCATGGCATTA+TGG + tig0027586:51095-51114 Msa1434700:CDS 40.0%
ATTTCAAGGGTAGCTGGAAT+TGG + tig0027586:51197-51216 Msa1434700:CDS 40.0%
TTTCAAGGGTAGCTGGAATT+GGG + tig0027586:51198-51217 Msa1434700:CDS 40.0%
!! GTGAAAGGTATCTCATAGGA+AGG + tig0027586:51351-51370 Msa1434700:CDS 40.0%
AGGTATCTCATAGGAAGGAT+TGG + tig0027586:51356-51375 Msa1434700:CDS 40.0%
GGTATCTCATAGGAAGGATT+GGG + tig0027586:51357-51376 Msa1434700:CDS 40.0%
CACTTTCCTCAATTACTGCT+GGG - tig0027586:51649-51668 None:intergenic 40.0%
TCACTTTCCTCAATTACTGC+TGG - tig0027586:51650-51669 None:intergenic 40.0%
! CTCACAGATTCTCCCATTTT+AGG - tig0027586:51752-51771 None:intergenic 40.0%
CTAAAATGGGAGAATCTGTG+AGG + tig0027586:51750-51769 Msa1434700:CDS 40.0%
! AGTGGTAGTGCCTATTTCTT+GGG + tig0027586:51806-51825 Msa1434700:CDS 40.0%
ATGTGACTGTCCCAAGAAAT+AGG - tig0027586:51819-51838 None:intergenic 40.0%
TCACATTTAGTGGTTCGTGA+TGG + tig0027586:51833-51852 Msa1434700:CDS 40.0%
ATCAGAACAGAACAGGAAGG+GGG - tig0027586:48027-48046 None:intergenic 45.0%
! CATGAAAAGGAGCTAGCCTA+GGG - tig0027586:48167-48186 None:intergenic 45.0%
! TCATGAAAAGGAGCTAGCCT+AGG - tig0027586:48168-48187 None:intergenic 45.0%
!! ATCGGCTTTGAGCACTATGA+TGG - tig0027586:48407-48426 None:intergenic 45.0%
GTGCTCAAAGCCGATGATAA+AGG + tig0027586:48412-48431 Msa1434700:CDS 45.0%
CAAAGCCGATGATAAAGGAG+AGG + tig0027586:48417-48436 Msa1434700:CDS 45.0%
CGTACCCTCTCCTTTATCAT+CGG - tig0027586:48425-48444 None:intergenic 45.0%
! TGGTTCTATCACAAGGGAGT+AGG - tig0027586:48583-48602 None:intergenic 45.0%
! AAAAAGCACGACCTCATCAG+TGG - tig0027586:48603-48622 None:intergenic 45.0%
!! TGATGAGGTCGTGCTTTTTG+AGG + tig0027586:48604-48623 Msa1434700:CDS 45.0%
TCAGAGATCCTTGTCAGACT+TGG + tig0027586:48893-48912 Msa1434700:CDS 45.0%
TAACTGTGCCAAGTCTGACA+AGG - tig0027586:48904-48923 None:intergenic 45.0%
! CCAATTTTATGTGTGCCGCA+GGG - tig0027586:49606-49625 None:intergenic 45.0%
CCTGCGGCACACATAAAATT+GGG + tig0027586:49604-49623 Msa1434700:CDS 45.0%
!! GCTTTTGTTTGTTGGTGTGG+TGG + tig0027586:49656-49675 Msa1434700:CDS 45.0%
TTGCTTGATCTATCCGCTTC+TGG + tig0027586:50079-50098 Msa1434700:CDS 45.0%
GCATAGCATATCACCAGAAG+CGG - tig0027586:50095-50114 None:intergenic 45.0%
GCTTCTGGTGATATGCTATG+CGG + tig0027586:50094-50113 Msa1434700:CDS 45.0%
CTTCTGGTGATATGCTATGC+GGG + tig0027586:50095-50114 Msa1434700:CDS 45.0%
TCAATCCGTACCACGTAAGT+TGG + tig0027586:50172-50191 Msa1434700:intron 45.0%
CGCTTTGCTAAAGTGATTGC+TGG + tig0027586:50238-50257 Msa1434700:intron 45.0%
AGCTGGCTGTTATAGTTGCT+TGG - tig0027586:50335-50354 None:intergenic 45.0%
TGCAATTTCACAAGGGAGCT+TGG + tig0027586:51039-51058 Msa1434700:CDS 45.0%
CTGTCATCGACACAACCAAA+AGG - tig0027586:51076-51095 None:intergenic 45.0%
CGATGACAGTCATGCTTTCA+TGG + tig0027586:51087-51106 Msa1434700:CDS 45.0%
TGGCTAATAGATGTCAGTCC+AGG + tig0027586:51167-51186 Msa1434700:CDS 45.0%
GGTCTCATTCAAGTCAATGC+CGG + tig0027586:51310-51329 Msa1434700:CDS 45.0%
CTTTCACTTTCGGGAACATG+AGG - tig0027586:51338-51357 None:intergenic 45.0%
CTCATGTTCCCGAAAGTGAA+AGG + tig0027586:51336-51355 Msa1434700:CDS 45.0%
! GATTAGCCCAGCAGTAATTG+AGG + tig0027586:51640-51659 Msa1434700:CDS 45.0%
TTAGGACTACTACTAGCAGG+AGG - tig0027586:51734-51753 None:intergenic 45.0%
AATGGGAGAATCTGTGAGGA+AGG + tig0027586:51754-51773 Msa1434700:CDS 45.0%
CTAATTGATGCAAGGGAGAG+TGG + tig0027586:51788-51807 Msa1434700:CDS 45.0%
! GAGTGGTAGTGCCTATTTCT+TGG + tig0027586:51805-51824 Msa1434700:CDS 45.0%
CTTGGGACAGTCACATTTAG+TGG + tig0027586:51823-51842 Msa1434700:CDS 45.0%
!! TGAGGGATTTTGAGAGCAAC+TGG - tig0027586:51926-51945 None:intergenic 45.0%
CTTCTACAAGAGCAGCATGA+GGG - tig0027586:51943-51962 None:intergenic 45.0%
ACTTCTACAAGAGCAGCATG+AGG - tig0027586:51944-51963 None:intergenic 45.0%
CATGCTGCTCTTGTAGAAGT+TGG + tig0027586:51944-51963 Msa1434700:CDS 45.0%
!! AAATGAAAATATAATTAAAT+GGG - tig0027586:48798-48817 None:intergenic 5.0%
!! AAAATGAAAATATAATTAAA+TGG - tig0027586:48799-48818 None:intergenic 5.0%
TCCTGCTGCTCATGACTCTA+AGG + tig0027586:48075-48094 Msa1434700:CDS 50.0%
ACCTTAGAGTCATGAGCAGC+AGG - tig0027586:48079-48098 None:intergenic 50.0%
AGCGCAAGATCTTGAATCCG+AGG + tig0027586:48315-48334 Msa1434700:CDS 50.0%
! TGTATACCACCTGAGAGTGC+TGG - tig0027586:48770-48789 None:intergenic 50.0%
ATAACACACGCAGAGGGAAC+AGG - tig0027586:49558-49577 None:intergenic 50.0%
CCCTGCGGCACACATAAAAT+TGG + tig0027586:49603-49622 Msa1434700:CDS 50.0%
! CCCAATTTTATGTGTGCCGC+AGG - tig0027586:49607-49626 None:intergenic 50.0%
! CCATTTTATGCGCAGCAGGT+GGG + tig0027586:49793-49812 Msa1434700:intron 50.0%
CTGGACCAACTTACGTGGTA+CGG - tig0027586:50180-50199 None:intergenic 50.0%
AAATAAAGGGTGGCAGGCAC+TGG - tig0027586:50199-50218 None:intergenic 50.0%
! TGCTGGTGATGACATACTGC+AGG + tig0027586:50255-50274 Msa1434700:intron 50.0%
TCCCTACTTTCTTCGGCTGT+CGG + tig0027586:50306-50325 Msa1434700:CDS 50.0%
TCCGACAGCCGAAGAAAGTA+GGG - tig0027586:50310-50329 None:intergenic 50.0%
TTCCGACAGCCGAAGAAAGT+AGG - tig0027586:50311-50330 None:intergenic 50.0%
TTCAGTCTAGCTGTGACGGT+TGG + tig0027586:50474-50493 Msa1434700:CDS 50.0%
!! GACGGTTGGTTTCAGAGACA+TGG + tig0027586:50488-50507 Msa1434700:CDS 50.0%
ATAGATGTCAGTCCAGGCCT+TGG + tig0027586:51173-51192 Msa1434700:CDS 50.0%
TAGATGTCAGTCCAGGCCTT+GGG + tig0027586:51174-51193 Msa1434700:CDS 50.0%
TCCAGGCCTTGGGATTTCAA+GGG + tig0027586:51184-51203 Msa1434700:CDS 50.0%
CAGCTACCCTTGAAATCCCA+AGG - tig0027586:51193-51212 None:intergenic 50.0%
CTTGGGATTTCAAGGGTAGC+TGG + tig0027586:51191-51210 Msa1434700:CDS 50.0%
! AAGGGACACGGGTGATTTTG+AGG + tig0027586:51439-51458 Msa1434700:CDS 50.0%
ATCTGTGAGGAAGGAGCTGT+TGG + tig0027586:51763-51782 Msa1434700:CDS 50.0%
!! GGGATTTTGAGAGCAACTGG+AGG - tig0027586:51923-51942 None:intergenic 50.0%
CTCAATGGCCCTTCGTGCTT+TGG - tig0027586:48666-48685 None:intergenic 55.0%
TGCGGCCCCAATTGTCATAC+AGG - tig0027586:48738-48757 None:intergenic 55.0%
GCAGAGGGAACAGGTACATC+TGG - tig0027586:49549-49568 None:intergenic 55.0%
!! AGCGCCATTTTATGCGCAGC+AGG + tig0027586:49789-49808 Msa1434700:CDS 55.0%
!! GCCATTTTATGCGCAGCAGG+TGG + tig0027586:49792-49811 Msa1434700:intron 55.0%
CCCACCTGCTGCGCATAAAA+TGG - tig0027586:49796-49815 None:intergenic 55.0%
GGGTCAGAGGCAATGTTTGC+AGG + tig0027586:49913-49932 Msa1434700:intron 55.0%
GAGGCAATGTTTGCAGGCCT+AGG + tig0027586:49919-49938 Msa1434700:CDS 55.0%
GGTGATATGCTATGCGGGTC+AGG + tig0027586:50100-50119 Msa1434700:CDS 55.0%
!! AGGCACTGGACCAACTTACG+TGG - tig0027586:50185-50204 None:intergenic 55.0%
TAACTGCACTGTGCCTGTGC+TGG - tig0027586:50732-50751 None:intergenic 55.0%
GTCCAGGCCTTGGGATTTCA+AGG + tig0027586:51183-51202 Msa1434700:CDS 55.0%
ACCCTTGAAATCCCAAGGCC+TGG - tig0027586:51188-51207 None:intergenic 55.0%
CTTTCGGGAACATGAGGCAC+CGG - tig0027586:51332-51351 None:intergenic 55.0%
!! GAGTGCTGGAGTGAGGACTG+CGG - tig0027586:48756-48775 None:intergenic 60.0%
GTCCTCACTCCAGCACTCTC+AGG + tig0027586:48758-48777 Msa1434700:CDS 60.0%
!! CACCTGAGAGTGCTGGAGTG+AGG - tig0027586:48763-48782 None:intergenic 60.0%
CTCACTCCAGCACTCTCAGG+TGG + tig0027586:48761-48780 Msa1434700:CDS 60.0%
CTGTTCGTGCTGCAGCCCTG+CGG + tig0027586:49588-49607 Msa1434700:CDS 65.0%
CGCAGGGCTGCAGCACGAAC+AGG - tig0027586:49590-49609 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0027586 gene 48024 52143 48024 ID=Msa1434700;Name=Msa1434700
tig0027586 mRNA 48024 52143 48024 ID=Msa1434700-mRNA-1;Parent=Msa1434700;Name=Msa1434700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=34|0.88|0.9|1|0.88|1|10|158|800
tig0027586 exon 48024 48096 48024 ID=Msa1434700-mRNA-1:exon:9279;Parent=Msa1434700-mRNA-1
tig0027586 exon 48214 48439 48214 ID=Msa1434700-mRNA-1:exon:9280;Parent=Msa1434700-mRNA-1
tig0027586 exon 48531 48782 48531 ID=Msa1434700-mRNA-1:exon:9281;Parent=Msa1434700-mRNA-1
tig0027586 exon 48871 48924 48871 ID=Msa1434700-mRNA-1:exon:9282;Parent=Msa1434700-mRNA-1
tig0027586 exon 49155 49205 49155 ID=Msa1434700-mRNA-1:exon:9283;Parent=Msa1434700-mRNA-1
tig0027586 exon 49550 49810 49550 ID=Msa1434700-mRNA-1:exon:9284;Parent=Msa1434700-mRNA-1
tig0027586 exon 49914 49966 49914 ID=Msa1434700-mRNA-1:exon:9285;Parent=Msa1434700-mRNA-1
tig0027586 exon 50068 50185 50068 ID=Msa1434700-mRNA-1:exon:9286;Parent=Msa1434700-mRNA-1
tig0027586 exon 50277 50531 50277 ID=Msa1434700-mRNA-1:exon:9287;Parent=Msa1434700-mRNA-1
tig0027586 exon 50892 52143 50892 ID=Msa1434700-mRNA-1:exon:9288;Parent=Msa1434700-mRNA-1
tig0027586 five_prime_UTR 48024 48057 48024 ID=Msa1434700-mRNA-1:five_prime_utr;Parent=Msa1434700-mRNA-1
tig0027586 CDS 48058 48096 48058 ID=Msa1434700-mRNA-1:cds;Parent=Msa1434700-mRNA-1
tig0027586 CDS 48214 48439 48214 ID=Msa1434700-mRNA-1:cds;Parent=Msa1434700-mRNA-1
tig0027586 CDS 48531 48782 48531 ID=Msa1434700-mRNA-1:cds;Parent=Msa1434700-mRNA-1
tig0027586 CDS 48871 48924 48871 ID=Msa1434700-mRNA-1:cds;Parent=Msa1434700-mRNA-1
tig0027586 CDS 49155 49205 49155 ID=Msa1434700-mRNA-1:cds;Parent=Msa1434700-mRNA-1
tig0027586 CDS 49550 49810 49550 ID=Msa1434700-mRNA-1:cds;Parent=Msa1434700-mRNA-1
tig0027586 CDS 49914 49966 49914 ID=Msa1434700-mRNA-1:cds;Parent=Msa1434700-mRNA-1
tig0027586 CDS 50068 50185 50068 ID=Msa1434700-mRNA-1:cds;Parent=Msa1434700-mRNA-1
tig0027586 CDS 50277 50531 50277 ID=Msa1434700-mRNA-1:cds;Parent=Msa1434700-mRNA-1
tig0027586 CDS 50892 51985 50892 ID=Msa1434700-mRNA-1:cds;Parent=Msa1434700-mRNA-1
tig0027586 three_prime_UTR 51986 52143 51986 ID=Msa1434700-mRNA-1:three_prime_utr;Parent=Msa1434700-mRNA-1
Gene Sequence

>Msa1434700

ATGGCTTCTCAACTGCATCCTGCTGCTCATGACTCTAAGAATAAAAGATGGAATCAAACAATTCTCTTGTCATTTCAAATTATTGGAATAGTTTATGGTCAACTTAGCACTGCTCCCTTATATGTATTCGGGACAATGCAAGCGCAAGATCTTGAATCCGAGGAAGTTGTTTATGAACTCTTCTCCTTCATTTTTTGGACTCTAACAACTATTTCTTTGATCAAGTATGCCATCATAGTGCTCAAAGCCGATGATAAAGGAGAGGGTGGTATTTTTGCTTTATACTCACTATTGTGTAGAAATGCAAAAGTTGGCCTACTCCCTTGTGATAGAACCACTGATGAGGTCGTGCTTTTTGAGGAGACAACAACTCCTTCTTCTAAGATTAATACTGATTCCAAAGCACGAAGGGCCATTGAGAAACACAAGTCCTGTCACTATTTGATATTGTTCTTGGCCCTCTTTGGTTCCTGTATGACAATTGGGGCCGCAGTCCTCACTCCAGCACTCTCAGGTGTGTTATCAGCTTCATATGGTGTTCAGAGATCCTTGTCAGACTTGGCACAGTTATTTTCATCGTCACAACATACTCGGGATTCCGTCTCAAATGTTCTACAAAAATATGTACCTGTTCCCTCTGCGTGTGTTATATTGATTGGCCTGTTCGTGCTGCAGCCCTGCGGCACACATAAAATTGGGTTCATGTTTGCTCCAATTATTGCTGTTTGGCTTTTGTTTGTTGGTGTGGTGGGAGCCTATAATATTTTCTTCTGGGATGTCAAAATTATCTATAAAATATCCCCACTATACCTGTTCAAATTCGTGAGGAATATTGATGTCAAAAGATGGAGATTATTAGGAAGCGCCATTTTATGCGCAGCAGGGTCAGAGGCAATGTTTGCAGGCCTAGGCCATTTTTCCAAGAAATCAATCAAGATTACATTTATTTGCTTGATCTATCCGCTTCTGGTGATATGCTATGCGGGTCAGGCTGCATATATCTCTAAAAACTTGAACACTCGAGATTTTAATCATCTTAGTCAATCCGTACCACGTCCATCCAAACATGTATTCATAGTATTGTCCCTACTTTCTTCGGCTGTCGGAAGCCAAGCAACTATAACAGCCAGCTTCTCCATCATTAACCAATGTCTAGCACTAAATTGTTTTCCCAGAGTAAAAGTCATTCACACATCAAAAACGATACATGGCCAGATTTACATCTCCGATGTCAACTGGTTATTGATGATTTTCAGTCTAGCTGTGACGGTTGGTTTCAGAGACATGGTGAAGATTGGCAACGCAACAAGTTTGGCTATAATATGTGGAATGCTTGTGACAACTAGTCTCATGTCACTAATCATTGCTTTGTATTGGGAGAAGAATTTGATGATATCTGCATGCTTTCTGTTATGTTTTGGCCTTGTTGAGGTTGCATATTTTTCGGCGTGTATGCTGCAATTTCACAAGGGAGCTTGGTATCTAGTTGTCCTTTTGGTTGTGTCGATGACAGTCATGCTTTCATGGCATTATGGAACAGTGAAGAAGTATGAGTTTGATTTGCAAAACAAGGTGTCAACTGAATGGCTAATAGATGTCAGTCCAGGCCTTGGGATTTCAAGGGTAGCTGGAATTGGGTTCATTTACACAGACATAGTAGCAGGAATCCCAGCTTTCTTTTCACATTTTATTACTAATCTTCCTGCATTTCATCAAGTGTTGATCATGGTCTCATTCAAGTCAATGCCGGTGCCTCATGTTCCCGAAAGTGAAAGGTATCTCATAGGAAGGATTGGGCCAAAAGATTATAAAATATATCGTTGCATTGTGAGATATGGATATTGTGATAATAATATAAGGGACACGGGTGATTTTGAGGAGAAAATCATTGGTGCTATAGGAGAATTCATTTCCATTGAACAGATGAGTGACATTGAATCAATGGTTTCGGCAGAAGAAAAAATGATGATAGTGGGAAATTCATCAGATGGAAATGCATTAGTCCCTTTGATGAATGATGAAACATGCAATGAAGTTAGCATTACTAATGAAGCTCAGATTAGCCCAGCAGTAATTGAGGAAAGTGATCATACATTGTTGGCGAGTAGTAGCTCTTGCAACAAAAGAAAAAAAGTACGGTTCATGTTGCCTCCTGCTAGTAGTAGTCCTAAAATGGGAGAATCTGTGAGGAAGGAGCTGTTGGAACTAATTGATGCAAGGGAGAGTGGTAGTGCCTATTTCTTGGGACAGTCACATTTAGTGGTTCGTGATGGCTCAAACTATCTCAAGAGATTCTTAATCATGGTTTTTCGTTTCTTTGAAAAGAATGGTCGTGAACCTCCAGTTGCTCTCAAAATCCCTCATGCTGCTCTTGTAGAAGTTGGTATGATATGTACTATATAA
Protein sequence

>Msa1434700

MASQLHPAAHDSKNKRWNQTILLSFQIIGIVYGQLSTAPLYVFGTMQAQDLESEEVVYELFSFIFWTLTTISLIKYAIIVLKADDKGEGGIFALYSLLCRNAKVGLLPCDRTTDEVVLFEETTTPSSKINTDSKARRAIEKHKSCHYLILFLALFGSCMTIGAAVLTPALSGVLSASYGVQRSLSDLAQLFSSSQHTRDSVSNVLQKYVPVPSACVILIGLFVLQPCGTHKIGFMFAPIIAVWLLFVGVVGAYNIFFWDVKIIYKISPLYLFKFVRNIDVKRWRLLGSAILCAAGSEAMFAGLGHFSKKSIKITFICLIYPLLVICYAGQAAYISKNLNTRDFNHLSQSVPRPSKHVFIVLSLLSSAVGSQATITASFSIINQCLALNCFPRVKVIHTSKTIHGQIYISDVNWLLMIFSLAVTVGFRDMVKIGNATSLAIICGMLVTTSLMSLIIALYWEKNLMISACFLLCFGLVEVAYFSACMLQFHKGAWYLVVLLVVSMTVMLSWHYGTVKKYEFDLQNKVSTEWLIDVSPGLGISRVAGIGFIYTDIVAGIPAFFSHFITNLPAFHQVLIMVSFKSMPVPHVPESERYLIGRIGPKDYKIYRCIVRYGYCDNNIRDTGDFEEKIIGAIGEFISIEQMSDIESMVSAEEKMMIVGNSSDGNALVPLMNDETCNEVSITNEAQISPAVIEESDHTLLASSSSCNKRKKVRFMLPPASSSPKMGESVRKELLELIDARESGSAYFLGQSHLVVRDGSNYLKRFLIMVFRFFEKNGREPPVALKIPHAALVEVGMICTI*