AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1085560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085560 MtrunA17_Chr8g0393241 98.875 800 8 1 1 800 1 799 0.0 1619
Msa1085560 MtrunA17_Chr6g0451081 45.980 796 384 12 13 797 13 773 0.0 705
Msa1085560 MtrunA17_Chr6g0461871 45.558 788 394 11 18 797 22 782 0.0 674
Msa1085560 MtrunA17_Chr3g0128831 43.125 800 420 10 12 797 13 791 0.0 656
Msa1085560 MtrunA17_Chr5g0430731 42.018 783 387 14 23 797 28 751 0.0 600
Msa1085560 MtrunA17_Chr8g0387661 39.949 786 436 11 22 796 28 788 0.0 572
Msa1085560 MtrunA17_Chr5g0413721 37.416 890 424 21 10 797 10 868 0.0 548
Msa1085560 MtrunA17_Chr2g0297291 37.690 788 447 11 13 797 40 786 4.26e-172 515
Msa1085560 MtrunA17_Chr4g0052401 38.383 779 430 14 23 797 52 784 8.54e-169 507
Msa1085560 MtrunA17_Chr4g0055471 34.875 800 477 12 8 800 53 815 4.54e-163 493
Msa1085560 MtrunA17_Chr8g0365001 35.088 798 471 10 8 796 77 836 9.41e-163 493
Msa1085560 MtrunA17_Chr7g0268981 34.919 799 441 15 1 796 47 769 1.26e-156 475
Msa1085560 MtrunA17_Chr2g0279131 34.204 804 472 12 7 796 85 845 1.09e-144 446
Msa1085560 MtrunA17_Chr5g0429991 33.086 807 477 13 7 796 85 845 1.16e-136 426
Msa1085560 MtrunA17_Chr8g0380281 31.790 799 494 13 10 800 27 782 3.71e-136 422
Msa1085560 MtrunA17_Chr5g0430571 39.182 587 277 14 214 797 23 532 1.10e-131 402
Msa1085560 MtrunA17_Chr8g0375411 36.783 628 363 9 7 633 15 609 1.10e-130 405
Msa1085560 MtrunA17_Chr8g0344561 34.951 618 344 10 186 796 2 568 3.95e-123 382
Msa1085560 MtrunA17_Chr8g0344591 37.333 450 254 7 186 630 2 428 4.80e-96 307
Msa1085560 MtrunA17_Chr8g0365031 34.468 470 286 9 213 673 44 500 6.78e-94 304
Msa1085560 MtrunA17_Chr2g0297311 41.748 412 209 6 29 435 58 443 3.95e-91 294
Msa1085560 MtrunA17_Chr5g0413751 55.682 176 78 0 437 612 133 308 1.39e-65 221
Msa1085560 MtrunA17_Chr5g0413751 43.158 95 50 2 80 170 47 141 1.89e-11 66.2
Msa1085560 MtrunA17_Chr2g0297321 35.054 368 202 7 439 797 5 344 6.02e-64 218
Msa1085560 MtrunA17_Chr5g0430551 46.250 160 82 2 21 177 11 169 1.52e-36 135
Msa1085560 MtrunA17_Chr8g0365041 40.331 181 106 2 2 181 44 223 4.83e-35 133
Msa1085560 MtrunA17_Chr8g0344551 38.562 153 90 1 20 172 3 151 9.74e-32 120
Msa1085560 MtrunA17_Chr8g0344581 38.562 153 90 1 20 172 3 151 1.55e-31 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085560 AT1G70300.1 44.279 804 405 14 10 800 9 782 0.0 684
Msa1085560 AT2G40540.1 43.911 813 402 13 8 797 10 791 0.0 674
Msa1085560 AT2G40540.5 43.911 813 402 13 8 797 10 791 0.0 674
Msa1085560 AT2G40540.4 43.911 813 402 13 8 797 10 791 0.0 674
Msa1085560 AT2G40540.2 43.911 813 402 13 8 797 10 791 0.0 674
Msa1085560 AT2G40540.3 43.911 813 402 13 8 797 10 791 0.0 674
Msa1085560 AT5G14880.1 43.875 800 400 12 13 797 13 778 0.0 654
Msa1085560 AT3G02050.1 45.625 800 379 13 18 797 23 786 0.0 649
Msa1085560 AT4G23640.1 39.272 797 445 12 11 796 3 771 0.0 563
Msa1085560 AT2G30070.1 39.203 778 374 10 23 797 28 709 0.0 561
Msa1085560 AT1G31120.1 36.469 776 439 10 29 797 65 793 1.42e-166 502
Msa1085560 AT4G13420.1 36.143 783 441 11 17 796 55 781 2.39e-166 501
Msa1085560 AT1G60160.1 35.472 795 458 11 9 796 77 823 4.81e-163 494
Msa1085560 AT2G35060.4 36.305 774 438 14 29 797 66 789 3.31e-160 485
Msa1085560 AT2G35060.1 36.305 774 438 14 29 797 66 789 3.31e-160 485
Msa1085560 AT2G35060.3 36.305 774 438 14 29 797 66 789 3.31e-160 485
Msa1085560 AT2G35060.2 36.258 775 438 15 29 797 66 790 1.89e-158 481
Msa1085560 AT4G19960.2 37.339 774 453 10 25 797 62 804 5.23e-154 470
Msa1085560 AT4G19960.3 36.876 781 473 8 25 797 62 830 7.92e-153 468
Msa1085560 AT2G30070.2 37.135 684 334 9 114 797 2 589 1.52e-152 459
Msa1085560 AT4G19960.1 36.582 790 453 11 25 797 62 820 8.82e-150 459
Msa1085560 AT4G33530.1 34.355 783 476 11 18 796 103 851 8.16e-139 432
Msa1085560 AT5G09400.1 33.082 795 490 9 10 796 94 854 6.06e-135 422
Msa1085560 AT4G19960.4 37.265 585 355 6 214 797 10 583 1.35e-123 384
Msa1085560 AT4G33530.2 34.317 644 386 10 156 796 14 623 7.21e-114 359

Find 174 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTGTCATTTCAAATTAT+TGG 0.097572 7_2:+86338946 Msa1085560:CDS
TAATACCTTGATTGATTTCT+TGG 0.133225 7_2:-86340658 None:intergenic
CAAATTATTGGAATAGTTTA+TGG 0.171289 7_2:+86338958 Msa1085560:CDS
TCACTATTTGATATTGTTCT+TGG 0.177064 7_2:+86339408 Msa1085560:CDS
ATGAGATACCTTTCACTTTC+GGG 0.185728 7_2:-86342052 None:intergenic
CCCTGCGGCACACATAAAAT+TGG 0.218769 7_2:+86340311 Msa1085560:CDS
TGCTAGTAGTAGTCCTAAAA+TGG 0.222069 7_2:+86342444 Msa1085560:CDS
CCCACCTGCTGCGCATAAAA+TGG 0.247149 7_2:-86340501 None:intergenic
CTCAATGGCCCTTCGTGCTT+TGG 0.254731 7_2:-86339371 None:intergenic
TTGCTTGATCTATCCGCTTC+TGG 0.258921 7_2:+86340787 Msa1085560:CDS
GATATTGTGATAATAATATA+AGG 0.265580 7_2:+86342128 Msa1085560:CDS
ATATTGTTCTTGGCCCTCTT+TGG 0.271760 7_2:+86339418 Msa1085560:CDS
AAAAGCCAAACAGCAATAAT+TGG 0.277240 7_2:-86340347 None:intergenic
GCATGCTTTCTGTTATGTTT+TGG 0.280359 7_2:+86341689 Msa1085560:CDS
CACTAATCATTGCTTTGTAT+TGG 0.284123 7_2:+86341645 Msa1085560:CDS
TTGGTTCCTGTATGACAATT+GGG 0.284904 7_2:+86339437 Msa1085560:CDS
TAGACAAGAAGTTATTTCTT+TGG 0.288483 7_2:-86342833 None:intergenic
GTCATGCTTTCATGGCATTA+TGG 0.288725 7_2:+86341803 Msa1085560:CDS
GTCAAAAGATGGAGATTATT+AGG 0.292066 7_2:+86340473 Msa1085560:CDS
TTTGGTTCCTGTATGACAAT+TGG 0.295249 7_2:+86339436 Msa1085560:CDS
ACTAATCATTGCTTTGTATT+GGG 0.300084 7_2:+86341646 Msa1085560:CDS
ATTTCAAGGGTAGCTGGAAT+TGG 0.306668 7_2:+86341905 Msa1085560:CDS
CATTGTCCCGAATACATATA+AGG 0.308500 7_2:-86338998 None:intergenic
ACGAATTTGAACAGGTATAG+TGG 0.308769 7_2:-86340437 None:intergenic
ATGTGACTGTCCCAAGAAAT+AGG 0.320049 7_2:-86342524 None:intergenic
TTGGTATCTAGTTGTCCTTT+TGG 0.329914 7_2:+86341766 Msa1085560:CDS
ACTGCTCCCTTATATGTATT+CGG 0.332081 7_2:+86338991 Msa1085560:CDS
CGCAGGGCTGCAGCACGAAC+AGG 0.333248 7_2:-86340295 None:intergenic
TCCTGCTGCTCATGACTCTA+AGG 0.336816 7_2:+86338783 Msa1085560:CDS
GAGTGGTAGTGCCTATTTCT+TGG 0.340865 7_2:+86342513 Msa1085560:CDS
AGTATTGTCCCTACTTTCTT+CGG 0.348739 7_2:+86341007 Msa1085560:CDS
TATGAGATACCTTTCACTTT+CGG 0.349566 7_2:-86342053 None:intergenic
GTCTCTCATTAATTAATTCT+AGG 0.349884 7_2:+86342726 Msa1085560:three_prime_UTR
GGGTCAGAGGCAATGTTTGC+AGG 0.358591 7_2:+86340621 Msa1085560:intron
CTTGGGACAGTCACATTTAG+TGG 0.358649 7_2:+86342531 Msa1085560:CDS
TATCGTTGCATTGTGAGATA+TGG 0.370461 7_2:+86342106 Msa1085560:CDS
TTGCTCCAATTATTGCTGTT+TGG 0.374670 7_2:+86340342 Msa1085560:CDS
ATCCCAGAAGAAAATATTAT+AGG 0.374775 7_2:-86340390 None:intergenic
AGCTGGCTGTTATAGTTGCT+TGG 0.383170 7_2:-86341040 None:intergenic
GTGCTCAAAGCCGATGATAA+AGG 0.386986 7_2:+86339120 Msa1085560:CDS
CCAGTGTTATCAGCTTCATA+TGG 0.390257 7_2:+86339575 Msa1085560:intron
CGATGACAGTCATGCTTTCA+TGG 0.391628 7_2:+86341795 Msa1085560:CDS
CAATACTATGAATACATGTT+TGG 0.391978 7_2:-86340991 None:intergenic
GAGAAAATCATTGGTGCTAT+AGG 0.397323 7_2:+86342169 Msa1085560:CDS
TTTCGTTTCTTTGAAAAGAA+TGG 0.402669 7_2:+86342598 Msa1085560:CDS
TCTGCGTGTGTTATATTGAT+TGG 0.403406 7_2:+86340272 Msa1085560:CDS
TTCAGAGACATGGTGAAGAT+TGG 0.404906 7_2:+86341206 Msa1085560:CDS
TGACATTGAATCAATGGTTT+CGG 0.408757 7_2:+86342219 Msa1085560:CDS
CTGCTCCCTTATATGTATTC+GGG 0.427071 7_2:+86338992 Msa1085560:CDS
GATGAGTGACATTGAATCAA+TGG 0.427788 7_2:+86342213 Msa1085560:CDS
TTTCAAGGGTAGCTGGAATT+GGG 0.431440 7_2:+86341906 Msa1085560:CDS
GGTGATATGCTATGCGGGTC+AGG 0.433632 7_2:+86340808 Msa1085560:CDS
TGCTAGACATTGGTTAATGA+TGG 0.434347 7_2:-86341066 None:intergenic
ATAGATGTCAGTCCAGGCCT+TGG 0.434506 7_2:+86341881 Msa1085560:CDS
AATGTCACTCATCTGTTCAA+TGG 0.442300 7_2:-86342203 None:intergenic
TTTACATCTCCGATGTCAAC+TGG 0.442324 7_2:+86341147 Msa1085560:CDS
TCTCAAGAGATTCTTAATCA+TGG 0.442855 7_2:+86342573 Msa1085560:CDS
AGTGGTAGTGCCTATTTCTT+GGG 0.442863 7_2:+86342514 Msa1085560:CDS
TGCAATTTCACAAGGGAGCT+TGG 0.443081 7_2:+86341747 Msa1085560:CDS
TCACTTTCCTCAATTACTGC+TGG 0.445037 7_2:-86342355 None:intergenic
GTCCAGGCCTTGGGATTTCA+AGG 0.446718 7_2:+86341891 Msa1085560:CDS
ATCTGTGAGGAAGGAGCTGT+TGG 0.455362 7_2:+86342471 Msa1085560:CDS
TATTCCTCACGAATTTGAAC+AGG 0.458746 7_2:-86340445 None:intergenic
CATGTTTCATCATTCATCAA+AGG 0.462722 7_2:-86342295 None:intergenic
ATGTTTCATCATTCATCAAA+GGG 0.464890 7_2:-86342294 None:intergenic
GTCCTCACTCCAGCACTCTC+AGG 0.466444 7_2:+86339466 Msa1085560:CDS
ATAAAATGTGAAAAGAAAGC+TGG 0.467438 7_2:-86341959 None:intergenic
TCCCTACTTTCTTCGGCTGT+CGG 0.468003 7_2:+86341014 Msa1085560:CDS
AGGTATCTCATAGGAAGGAT+TGG 0.477155 7_2:+86342064 Msa1085560:CDS
TATGATTATCAGAACAGAAC+AGG 0.480109 7_2:-86338739 None:intergenic
ACCCTTGAAATCCCAAGGCC+TGG 0.485489 7_2:-86341893 None:intergenic
GAGGCAATGTTTGCAGGCCT+AGG 0.489080 7_2:+86340627 Msa1085560:CDS
TGACATCGGAGATGTAAATC+TGG 0.489377 7_2:-86341142 None:intergenic
ATTTCATCAAGTGTTGATCA+TGG 0.490098 7_2:+86341997 Msa1085560:CDS
GAAAGTGAAAGGTATCTCAT+AGG 0.491062 7_2:+86342055 Msa1085560:CDS
ACAGGACTTGTGTTTCTCAA+TGG 0.493275 7_2:-86339386 None:intergenic
CTTGGGATTTCAAGGGTAGC+TGG 0.493441 7_2:+86341899 Msa1085560:CDS
ATATTGTGATAATAATATAA+GGG 0.493754 7_2:+86342129 Msa1085560:CDS
CGTACCCTCTCCTTTATCAT+CGG 0.494667 7_2:-86339130 None:intergenic
TAGATGTCAGTCCAGGCCTT+GGG 0.495201 7_2:+86341882 Msa1085560:CDS
CACTTTCCTCAATTACTGCT+GGG 0.497373 7_2:-86342354 None:intergenic
CGAATTTGAACAGGTATAGT+GGG 0.498758 7_2:-86340436 None:intergenic
CATGCTGCTCTTGTAGAAGT+TGG 0.499402 7_2:+86342652 Msa1085560:CDS
CCTGCGGCACACATAAAATT+GGG 0.499524 7_2:+86340312 Msa1085560:CDS
GGTATCTCATAGGAAGGATT+GGG 0.500620 7_2:+86342065 Msa1085560:CDS
ATCAACACTTGATGAAATGC+AGG 0.501496 7_2:-86341992 None:intergenic
TCAGAGATCCTTGTCAGACT+TGG 0.504330 7_2:+86339601 Msa1085560:CDS
ATTGTCCCGAATACATATAA+GGG 0.505493 7_2:-86338997 None:intergenic
ACCTTAGAGTCATGAGCAGC+AGG 0.505650 7_2:-86338784 None:intergenic
GGAAAGTGATCATACATTGT+TGG 0.507113 7_2:+86342369 Msa1085560:CDS
TAAAATGTGAAAAGAAAGCT+GGG 0.508339 7_2:-86341958 None:intergenic
ATAACACACGCAGAGGGAAC+AGG 0.516134 7_2:-86340263 None:intergenic
TCAGAACAGAACAGGAAGGG+GGG 0.516523 7_2:-86338731 None:intergenic
TGCGGCCCCAATTGTCATAC+AGG 0.516547 7_2:-86339443 None:intergenic
GGAATATTGATGTCAAAAGA+TGG 0.518956 7_2:+86340462 Msa1085560:CDS
AACAATTTAGTGCTAGACAT+TGG 0.524283 7_2:-86341076 None:intergenic
ACTATGAATACATGTTTGGA+TGG 0.524692 7_2:-86340987 None:intergenic
CAGAACAGAACAGGAAGGGG+GGG 0.526340 7_2:-86338730 None:intergenic
ATCGGCTTTGAGCACTATGA+TGG 0.526999 7_2:-86339112 None:intergenic
TTCAGTCTAGCTGTGACGGT+TGG 0.528040 7_2:+86341182 Msa1085560:CDS
TGATAGATAGATAGAATCAA+AGG 0.530754 7_2:+86342788 Msa1085560:three_prime_UTR
GCTAGTAGTAGTCCTAAAAT+GGG 0.535308 7_2:+86342445 Msa1085560:CDS
TTTCATCGTCACAACATACT+CGG 0.535954 7_2:+86339863 Msa1085560:CDS
TTGTGTAGAAATGCAAAAGT+TGG 0.539250 7_2:+86339265 Msa1085560:CDS
GATTAGCCCAGCAGTAATTG+AGG 0.542723 7_2:+86342348 Msa1085560:CDS
TATCAGAACAGAACAGGAAG+GGG 0.543265 7_2:-86338733 None:intergenic
AAAACAAGGTGTCAACTGAA+TGG 0.543678 7_2:+86341855 Msa1085560:CDS
ATTTACACAGACATAGTAGC+AGG 0.543683 7_2:+86341932 Msa1085560:CDS
CTGTCATCGACACAACCAAA+AGG 0.544019 7_2:-86341781 None:intergenic
GAACAATATCAAATAGTGAC+AGG 0.547114 7_2:-86339404 None:intergenic
TCAGTATTAATCTTAGAAGA+AGG 0.549138 7_2:-86339346 None:intergenic
CTTCTGGTGATATGCTATGC+GGG 0.549853 7_2:+86340803 Msa1085560:CDS
TCCGACAGCCGAAGAAAGTA+GGG 0.550295 7_2:-86341015 None:intergenic
TTCCGACAGCCGAAGAAAGT+AGG 0.550320 7_2:-86341016 None:intergenic
CTGGACCAACTTACGTGGTA+CGG 0.552439 7_2:-86340885 None:intergenic
TGGCTAATAGATGTCAGTCC+AGG 0.553837 7_2:+86341875 Msa1085560:CDS
CTTTCGGGAACATGAGGCAC+CGG 0.556705 7_2:-86342037 None:intergenic
CTAATTGATGCAAGGGAGAG+TGG 0.560075 7_2:+86342496 Msa1085560:CDS
TACTGATTCCAAAGCACGAA+GGG 0.560127 7_2:+86339363 Msa1085560:CDS
GAGTTCATAAACAACTTCCT+CGG 0.565549 7_2:-86339040 None:intergenic
TGGTTCCTGTATGACAATTG+GGG 0.565614 7_2:+86339438 Msa1085560:CDS
TTGGTTAATGATGGAGAAGC+TGG 0.565734 7_2:-86341057 None:intergenic
CTTTCACTTTCGGGAACATG+AGG 0.566786 7_2:-86342043 None:intergenic
CATTAATTAATTCTAGGAGG+AGG 0.573002 7_2:+86342732 Msa1085560:three_prime_UTR
CTCATGTTCCCGAAAGTGAA+AGG 0.575661 7_2:+86342044 Msa1085560:CDS
TGTATACCACCTGAGAGTGC+TGG 0.576733 7_2:-86339475 None:intergenic
TGGTTCTATCACAAGGGAGT+AGG 0.578415 7_2:-86339288 None:intergenic
ATAGTGGGAAATTCATCAGA+TGG 0.578894 7_2:+86342259 Msa1085560:CDS
GTTGGAACTAATTGATGCAA+GGG 0.584636 7_2:+86342489 Msa1085560:CDS
GTGAAAGGTATCTCATAGGA+AGG 0.585522 7_2:+86342059 Msa1085560:CDS
TGAGTTTGATTTGCAAAACA+AGG 0.593927 7_2:+86341841 Msa1085560:CDS
TTCATCGTCACAACATACTC+GGG 0.594104 7_2:+86339864 Msa1085560:CDS
AATGGGAGAATCTGTGAGGA+AGG 0.595349 7_2:+86342462 Msa1085560:CDS
TCTCATTAATTAATTCTAGG+AGG 0.596868 7_2:+86342729 Msa1085560:three_prime_UTR
TGTCATACAGGAACCAAAGA+GGG 0.597184 7_2:-86339431 None:intergenic
CAGCTACCCTTGAAATCCCA+AGG 0.598668 7_2:-86341898 None:intergenic
GGTCTCATTCAAGTCAATGC+CGG 0.599286 7_2:+86342018 Msa1085560:CDS
TGTTGGAACTAATTGATGCA+AGG 0.600387 7_2:+86342488 Msa1085560:CDS
GTGTATGCTGCAATTTCACA+AGG 0.605542 7_2:+86341739 Msa1085560:CDS
ATTATCAGAACAGAACAGGA+AGG 0.607515 7_2:-86338735 None:intergenic
GCAGGTTTGGCTATAATATG+TGG 0.608232 7_2:+86341596 Msa1085560:intron
TGATAATAATATAAGGGACA+CGG 0.608313 7_2:+86342135 Msa1085560:CDS
TCACATTTAGTGGTTCGTGA+TGG 0.611078 7_2:+86342541 Msa1085560:CDS
GATAATAATATAAGGGACAC+GGG 0.611099 7_2:+86342136 Msa1085560:CDS
TCATCAGTGGTTCTATCACA+AGG 0.619268 7_2:-86339295 None:intergenic
GCATAGCATATCACCAGAAG+CGG 0.619528 7_2:-86340800 None:intergenic
AGCGCAAGATCTTGAATCCG+AGG 0.620300 7_2:+86339023 Msa1085560:CDS
ATCAGAACAGAACAGGAAGG+GGG 0.623012 7_2:-86338732 None:intergenic
TTATCAGAACAGAACAGGAA+GGG 0.626176 7_2:-86338734 None:intergenic
TCCAGGCCTTGGGATTTCAA+GGG 0.627014 7_2:+86341892 Msa1085560:CDS
CTGTTCGTGCTGCAGCCCTG+CGG 0.631273 7_2:+86340296 Msa1085560:CDS
TTGTGATAGAACCACTGATG+AGG 0.635745 7_2:+86339297 Msa1085560:CDS
ATCAATATAACACACGCAGA+GGG 0.639548 7_2:-86340269 None:intergenic
GACGGTTGGTTTCAGAGACA+TGG 0.641262 7_2:+86341196 Msa1085560:CDS
ACTTCTACAAGAGCAGCATG+AGG 0.642823 7_2:-86342649 None:intergenic
CATCAATAACCAGTTGACAT+CGG 0.643303 7_2:-86341156 None:intergenic
CTTCTACAAGAGCAGCATGA+GGG 0.644345 7_2:-86342648 None:intergenic
CACCTGAGAGTGCTGGAGTG+AGG 0.647966 7_2:-86339468 None:intergenic
CTCACTCCAGCACTCTCAGG+TGG 0.651315 7_2:+86339469 Msa1085560:CDS
CAAAGCCGATGATAAAGGAG+AGG 0.656962 7_2:+86339125 Msa1085560:CDS
GCTTCTGGTGATATGCTATG+CGG 0.658421 7_2:+86340802 Msa1085560:CDS
TTGTCATACAGGAACCAAAG+AGG 0.661921 7_2:-86339432 None:intergenic
TAACTGTGCCAAGTCTGACA+AGG 0.665484 7_2:-86339609 None:intergenic
AATCAATATAACACACGCAG+AGG 0.681941 7_2:-86340270 None:intergenic
AAAGCCGATGATAAAGGAGA+GGG 0.682612 7_2:+86339126 Msa1085560:CDS
TTAGGACTACTACTAGCAGG+AGG 0.682982 7_2:-86342439 None:intergenic
TATACCTGTTCAAATTCGTG+AGG 0.684600 7_2:+86340441 Msa1085560:CDS
GTTCTGATAATCATATCACA+TGG 0.685690 7_2:+86338747 Msa1085560:exon
CATCAGTGGTTCTATCACAA+GGG 0.691255 7_2:-86339294 None:intergenic
GAATTTGAACAGGTATAGTG+GGG 0.699929 7_2:-86340435 None:intergenic
CTAAAATGGGAGAATCTGTG+AGG 0.712297 7_2:+86342458 Msa1085560:CDS
ATACTGATTCCAAAGCACGA+AGG 0.716209 7_2:+86339362 Msa1085560:CDS
GAGTGCTGGAGTGAGGACTG+CGG 0.718425 7_2:-86339461 None:intergenic
TGTATGCTGCAATTTCACAA+GGG 0.732397 7_2:+86341740 Msa1085560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTCTGAAAAAATAATA+GGG - chr7_2:86338908-86338927 None:intergenic 10.0%
!!! TTTTATTCTGAAAAAATAAT+AGG - chr7_2:86338909-86338928 None:intergenic 10.0%
!! ATATTGTGATAATAATATAA+GGG + chr7_2:86342129-86342148 Msa1085560:CDS 10.0%
!!! TATTTTTTCAGAATAAAAGA+TGG + chr7_2:86338911-86338930 Msa1085560:intron 15.0%
!! GTAGCTAAAATAATAAATAT+AGG - chr7_2:86339667-86339686 None:intergenic 15.0%
!!! ATTGTTAATTAGAATTGTTT+TGG + chr7_2:86340567-86340586 Msa1085560:intron 15.0%
!!! CGATATATTTTATAATCTTT+TGG - chr7_2:86342091-86342110 None:intergenic 15.0%
!! GATATTGTGATAATAATATA+AGG + chr7_2:86342128-86342147 Msa1085560:CDS 15.0%
!! CAAATTATTGGAATAGTTTA+TGG + chr7_2:86338958-86338977 Msa1085560:CDS 20.0%
!! TTCAATGTAGTGAATATAAT+TGG - chr7_2:86339207-86339226 None:intergenic 20.0%
!!! ATTTATTATTTTAGCTACCA+AGG + chr7_2:86339669-86339688 Msa1085560:intron 20.0%
!! AAGAAAAGCAGTAAATATAT+TGG - chr7_2:86339730-86339749 None:intergenic 20.0%
!!! TTTTAGTTTTTGAAATCTGA+TGG + chr7_2:86340118-86340137 Msa1085560:intron 20.0%
!! AATTCTAATTAACAATCACT+TGG - chr7_2:86340563-86340582 None:intergenic 20.0%
!!! TTCTAGTTTAATGCAAAAAT+GGG - chr7_2:86341316-86341335 None:intergenic 20.0%
!!! TTTCTAGTTTAATGCAAAAA+TGG - chr7_2:86341317-86341336 None:intergenic 20.0%
!!! AAAAGTTGGTAAATTAAACA+GGG + chr7_2:86341378-86341397 Msa1085560:intron 20.0%
!! CTTGTGATTTGATTAAATTA+AGG + chr7_2:86341476-86341495 Msa1085560:intron 20.0%
!! TGATTTGATTAAATTAAGGA+TGG + chr7_2:86341480-86341499 Msa1085560:intron 20.0%
!! TTAAATTAAGGATGGTTATA+TGG + chr7_2:86341488-86341507 Msa1085560:intron 20.0%
!! TTAATTAAGTTCACAATTTG+TGG + chr7_2:86341574-86341593 Msa1085560:intron 20.0%
!! CTCTTGTCATTTCAAATTAT+TGG + chr7_2:86338946-86338965 Msa1085560:CDS 25.0%
!! CTACATTGAAAATATTTTCC+AGG + chr7_2:86339217-86339236 Msa1085560:intron 25.0%
! TCAGTATTAATCTTAGAAGA+AGG - chr7_2:86339349-86339368 None:intergenic 25.0%
! TCACTATTTGATATTGTTCT+TGG + chr7_2:86339408-86339427 Msa1085560:CDS 25.0%
!! GCAGAAAGTATATAAATCTT+AGG - chr7_2:86339548-86339567 None:intergenic 25.0%
!! TTTTTGTAGAACATTTGAGA+CGG - chr7_2:86339893-86339912 None:intergenic 25.0%
!! AGCCTATAATATTTTCTTCT+GGG + chr7_2:86340388-86340407 Msa1085560:CDS 25.0%
! ATCCCAGAAGAAAATATTAT+AGG - chr7_2:86340393-86340412 None:intergenic 25.0%
!!! GTTAATTAGAATTGTTTTGG+AGG + chr7_2:86340570-86340589 Msa1085560:intron 25.0%
!! TGATTGATTTCTTGGAAAAA+TGG - chr7_2:86340653-86340672 None:intergenic 25.0%
!! TTTTTCCAAGAAATCAATCA+AGG + chr7_2:86340653-86340672 Msa1085560:CDS 25.0%
!! TAATACCTTGATTGATTTCT+TGG - chr7_2:86340661-86340680 None:intergenic 25.0%
! AATCAATTTACTAGAACTAC+AGG - chr7_2:86340699-86340718 None:intergenic 25.0%
!!! AAAGGCATCTTAGAAATAAA+GGG - chr7_2:86340920-86340939 None:intergenic 25.0%
!!! AAAAGGCATCTTAGAAATAA+AGG - chr7_2:86340921-86340940 None:intergenic 25.0%
! CAATACTATGAATACATGTT+TGG - chr7_2:86340994-86341013 None:intergenic 25.0%
! ACCAAGAGAAATGAAAAAAA+TGG - chr7_2:86341248-86341267 None:intergenic 25.0%
! TTTGAGTCCTTAATTTATGA+AGG + chr7_2:86341338-86341357 Msa1085560:intron 25.0%
! TTGAGTCCTTAATTTATGAA+GGG + chr7_2:86341339-86341358 Msa1085560:intron 25.0%
! GTCTTAAGAAAATGAAAAGT+TGG + chr7_2:86341364-86341383 Msa1085560:intron 25.0%
!!! GAAAAGTTGGTAAATTAAAC+AGG + chr7_2:86341377-86341396 Msa1085560:intron 25.0%
! ACTAATCATTGCTTTGTATT+GGG + chr7_2:86341646-86341665 Msa1085560:CDS 25.0%
! TAAAATGTGAAAAGAAAGCT+GGG - chr7_2:86341961-86341980 None:intergenic 25.0%
! ATAAAATGTGAAAAGAAAGC+TGG - chr7_2:86341962-86341981 None:intergenic 25.0%
! TGATAATAATATAAGGGACA+CGG + chr7_2:86342135-86342154 Msa1085560:CDS 25.0%
! AGAAGAAAAAATGATGATAG+TGG + chr7_2:86342243-86342262 Msa1085560:CDS 25.0%
! GAAGAAAAAATGATGATAGT+GGG + chr7_2:86342244-86342263 Msa1085560:CDS 25.0%
! ATGTTTCATCATTCATCAAA+GGG - chr7_2:86342297-86342316 None:intergenic 25.0%
! GCAACAAAAGAAAAAAAGTA+CGG + chr7_2:86342407-86342426 Msa1085560:CDS 25.0%
!! TTTCGTTTCTTTGAAAAGAA+TGG + chr7_2:86342598-86342617 Msa1085560:CDS 25.0%
! GTCTCTCATTAATTAATTCT+AGG + chr7_2:86342726-86342745 Msa1085560:three_prime_UTR 25.0%
! TCTCATTAATTAATTCTAGG+AGG + chr7_2:86342729-86342748 Msa1085560:three_prime_UTR 25.0%
! TGATAGATAGATAGAATCAA+AGG + chr7_2:86342788-86342807 Msa1085560:three_prime_UTR 25.0%
TATGATTATCAGAACAGAAC+AGG - chr7_2:86338742-86338761 None:intergenic 30.0%
GTTCTGATAATCATATCACA+TGG + chr7_2:86338747-86338766 Msa1085560:exon 30.0%
ATTGTCCCGAATACATATAA+GGG - chr7_2:86339000-86339019 None:intergenic 30.0%
!!! AACTCTTCTCCTTCATTTTT+TGG + chr7_2:86339058-86339077 Msa1085560:CDS 30.0%
TGTTAGAGTCCAAAAAATGA+AGG - chr7_2:86339070-86339089 None:intergenic 30.0%
! CATTGAAAATATTTTCCAGG+TGG + chr7_2:86339220-86339239 Msa1085560:intron 30.0%
TATAAAGCAAAAATACCACC+TGG - chr7_2:86339238-86339257 None:intergenic 30.0%
TTGTGTAGAAATGCAAAAGT+TGG + chr7_2:86339265-86339284 Msa1085560:CDS 30.0%
GAACAATATCAAATAGTGAC+AGG - chr7_2:86339407-86339426 None:intergenic 30.0%
CTTCAGAAAAGAAAATGTCA+TGG - chr7_2:86339784-86339803 None:intergenic 30.0%
! CATGACATTTTCTTTTCTGA+AGG + chr7_2:86339782-86339801 Msa1085560:intron 30.0%
CACAATTATCCTCGATAAAT+TGG - chr7_2:86340046-86340065 None:intergenic 30.0%
AAAAGCCAAACAGCAATAAT+TGG - chr7_2:86340350-86340369 None:intergenic 30.0%
! GAGCCTATAATATTTTCTTC+TGG + chr7_2:86340387-86340406 Msa1085560:CDS 30.0%
GGAATATTGATGTCAAAAGA+TGG + chr7_2:86340462-86340481 Msa1085560:CDS 30.0%
GTCAAAAGATGGAGATTATT+AGG + chr7_2:86340473-86340492 Msa1085560:CDS 30.0%
TTTAGCAAAGCGACTAAAAA+AGG - chr7_2:86340938-86340957 None:intergenic 30.0%
ACTATGAATACATGTTTGGA+TGG - chr7_2:86340990-86341009 None:intergenic 30.0%
AACAATTTAGTGCTAGACAT+TGG - chr7_2:86341079-86341098 None:intergenic 30.0%
!!! GCCATTTTTTTCATTTCTCT+TGG + chr7_2:86341244-86341263 Msa1085560:intron 30.0%
AGACTTCCCTTCATAAATTA+AGG - chr7_2:86341348-86341367 None:intergenic 30.0%
TTAATATATACTACCAGCAC+AGG + chr7_2:86341424-86341443 Msa1085560:intron 30.0%
AAATCACAAGTACAGTAGTT+CGG - chr7_2:86341466-86341485 None:intergenic 30.0%
CACTAATCATTGCTTTGTAT+TGG + chr7_2:86341645-86341664 Msa1085560:CDS 30.0%
AAAAATATGCAACCTCAACA+AGG - chr7_2:86341715-86341734 None:intergenic 30.0%
! TGTTGAGGTTGCATATTTTT+CGG + chr7_2:86341715-86341734 Msa1085560:CDS 30.0%
!! TGAGTTTGATTTGCAAAACA+AGG + chr7_2:86341841-86341860 Msa1085560:CDS 30.0%
!! ATTTCATCAAGTGTTGATCA+TGG + chr7_2:86341997-86342016 Msa1085560:CDS 30.0%
TATGAGATACCTTTCACTTT+CGG - chr7_2:86342056-86342075 None:intergenic 30.0%
GATAATAATATAAGGGACAC+GGG + chr7_2:86342136-86342155 Msa1085560:CDS 30.0%
!! GATTTTGAGGAGAAAATCAT+TGG + chr7_2:86342160-86342179 Msa1085560:CDS 30.0%
TGACATTGAATCAATGGTTT+CGG + chr7_2:86342219-86342238 Msa1085560:CDS 30.0%
CATGTTTCATCATTCATCAA+AGG - chr7_2:86342298-86342317 None:intergenic 30.0%
TCTCAAGAGATTCTTAATCA+TGG + chr7_2:86342573-86342592 Msa1085560:CDS 30.0%
! CATTAATTAATTCTAGGAGG+AGG + chr7_2:86342732-86342751 Msa1085560:three_prime_UTR 30.0%
TTATCAGAACAGAACAGGAA+GGG - chr7_2:86338737-86338756 None:intergenic 35.0%
ATTATCAGAACAGAACAGGA+AGG - chr7_2:86338738-86338757 None:intergenic 35.0%
AAGAGTGAGACTGAATATGA+TGG - chr7_2:86338818-86338837 None:intergenic 35.0%
!! AATGATCTTTCTAGTTCCCT+AGG + chr7_2:86338856-86338875 Msa1085560:intron 35.0%
ACTGCTCCCTTATATGTATT+CGG + chr7_2:86338991-86339010 Msa1085560:CDS 35.0%
CATTGTCCCGAATACATATA+AGG - chr7_2:86339001-86339020 None:intergenic 35.0%
GAGTTCATAAACAACTTCCT+CGG - chr7_2:86339043-86339062 None:intergenic 35.0%
! TTTGGTTCCTGTATGACAAT+TGG + chr7_2:86339436-86339455 Msa1085560:CDS 35.0%
TTGGTTCCTGTATGACAATT+GGG + chr7_2:86339437-86339456 Msa1085560:CDS 35.0%
TTTCATCGTCACAACATACT+CGG + chr7_2:86339863-86339882 Msa1085560:CDS 35.0%
!! ACCAATTGACTCGACATAAA+GGG - chr7_2:86339962-86339981 None:intergenic 35.0%
!! AATTGGTCGATTTGTGTGTT+TGG + chr7_2:86339975-86339994 Msa1085560:intron 35.0%
ATTGGATGCATAGTGCTAAT+TGG - chr7_2:86340028-86340047 None:intergenic 35.0%
ACTATGCATCCAATTTATCG+AGG + chr7_2:86340034-86340053 Msa1085560:intron 35.0%
! GTATTTAATTTAACCCGCCA+TGG - chr7_2:86340072-86340091 None:intergenic 35.0%
!! CATGTAGTTTGCTTCTAGTT+TGG + chr7_2:86340091-86340110 Msa1085560:intron 35.0%
CTGGAAATCAATTGAGCAAA+AGG - chr7_2:86340238-86340257 None:intergenic 35.0%
ATCAATATAACACACGCAGA+GGG - chr7_2:86340272-86340291 None:intergenic 35.0%
AATCAATATAACACACGCAG+AGG - chr7_2:86340273-86340292 None:intergenic 35.0%
TCTGCGTGTGTTATATTGAT+TGG + chr7_2:86340272-86340291 Msa1085560:CDS 35.0%
! TTGCTCCAATTATTGCTGTT+TGG + chr7_2:86340342-86340361 Msa1085560:CDS 35.0%
GAATTTGAACAGGTATAGTG+GGG - chr7_2:86340438-86340457 None:intergenic 35.0%
CGAATTTGAACAGGTATAGT+GGG - chr7_2:86340439-86340458 None:intergenic 35.0%
ACGAATTTGAACAGGTATAG+TGG - chr7_2:86340440-86340459 None:intergenic 35.0%
TATACCTGTTCAAATTCGTG+AGG + chr7_2:86340441-86340460 Msa1085560:CDS 35.0%
TATTCCTCACGAATTTGAAC+AGG - chr7_2:86340448-86340467 None:intergenic 35.0%
! TCATGCTCTACAAATTTTGC+AGG + chr7_2:86340600-86340619 Msa1085560:intron 35.0%
! CATGCTCTACAAATTTTGCA+GGG + chr7_2:86340601-86340620 Msa1085560:intron 35.0%
ATTTCTTGGAAAAATGGCCT+AGG - chr7_2:86340647-86340666 None:intergenic 35.0%
TTTACTAGAACTACAGGACA+AGG - chr7_2:86340693-86340712 None:intergenic 35.0%
AGTATTGTCCCTACTTTCTT+CGG + chr7_2:86341007-86341026 Msa1085560:CDS 35.0%
! TGCTAGACATTGGTTAATGA+TGG - chr7_2:86341069-86341088 None:intergenic 35.0%
! GTGTGAATGACTTTTACTCT+GGG - chr7_2:86341104-86341123 None:intergenic 35.0%
! TGTGTGAATGACTTTTACTC+TGG - chr7_2:86341105-86341124 None:intergenic 35.0%
CACACATCAAAAACGATACA+TGG + chr7_2:86341119-86341138 Msa1085560:CDS 35.0%
CATCAATAACCAGTTGACAT+CGG - chr7_2:86341159-86341178 None:intergenic 35.0%
TTAAGTTCACAATTTGTGGC+AGG + chr7_2:86341578-86341597 Msa1085560:intron 35.0%
! GCATGCTTTCTGTTATGTTT+TGG + chr7_2:86341689-86341708 Msa1085560:CDS 35.0%
TGTATGCTGCAATTTCACAA+GGG + chr7_2:86341740-86341759 Msa1085560:CDS 35.0%
! TTGGTATCTAGTTGTCCTTT+TGG + chr7_2:86341766-86341785 Msa1085560:CDS 35.0%
! AAAACAAGGTGTCAACTGAA+TGG + chr7_2:86341855-86341874 Msa1085560:CDS 35.0%
ATTTACACAGACATAGTAGC+AGG + chr7_2:86341932-86341951 Msa1085560:CDS 35.0%
ATCAACACTTGATGAAATGC+AGG - chr7_2:86341995-86342014 None:intergenic 35.0%
ATGAGATACCTTTCACTTTC+GGG - chr7_2:86342055-86342074 None:intergenic 35.0%
!! GAAAGTGAAAGGTATCTCAT+AGG + chr7_2:86342055-86342074 Msa1085560:CDS 35.0%
TATCGTTGCATTGTGAGATA+TGG + chr7_2:86342106-86342125 Msa1085560:CDS 35.0%
!! GAGAAAATCATTGGTGCTAT+AGG + chr7_2:86342169-86342188 Msa1085560:CDS 35.0%
AATGTCACTCATCTGTTCAA+TGG - chr7_2:86342206-86342225 None:intergenic 35.0%
GATGAGTGACATTGAATCAA+TGG + chr7_2:86342213-86342232 Msa1085560:CDS 35.0%
! ATAGTGGGAAATTCATCAGA+TGG + chr7_2:86342259-86342278 Msa1085560:CDS 35.0%
GGAAAGTGATCATACATTGT+TGG + chr7_2:86342369-86342388 Msa1085560:CDS 35.0%
!!! ATTTTAGGACTACTACTAGC+AGG - chr7_2:86342445-86342464 None:intergenic 35.0%
TGCTAGTAGTAGTCCTAAAA+TGG + chr7_2:86342444-86342463 Msa1085560:CDS 35.0%
GCTAGTAGTAGTCCTAAAAT+GGG + chr7_2:86342445-86342464 Msa1085560:CDS 35.0%
TGTTGGAACTAATTGATGCA+AGG + chr7_2:86342488-86342507 Msa1085560:CDS 35.0%
GTTGGAACTAATTGATGCAA+GGG + chr7_2:86342489-86342508 Msa1085560:CDS 35.0%
TATCAGAACAGAACAGGAAG+GGG - chr7_2:86338736-86338755 None:intergenic 40.0%
! GTGAGACTGAATATGATGGA+TGG - chr7_2:86338814-86338833 None:intergenic 40.0%
GGGAGACAGAAATCATGAAA+AGG - chr7_2:86338888-86338907 None:intergenic 40.0%
CTGCTCCCTTATATGTATTC+GGG + chr7_2:86338992-86339011 Msa1085560:CDS 40.0%
AAAGCCGATGATAAAGGAGA+GGG + chr7_2:86339126-86339145 Msa1085560:CDS 40.0%
! CATCAGTGGTTCTATCACAA+GGG - chr7_2:86339297-86339316 None:intergenic 40.0%
! TCATCAGTGGTTCTATCACA+AGG - chr7_2:86339298-86339317 None:intergenic 40.0%
TTGTGATAGAACCACTGATG+AGG + chr7_2:86339297-86339316 Msa1085560:CDS 40.0%
!! ATACTGATTCCAAAGCACGA+AGG + chr7_2:86339362-86339381 Msa1085560:CDS 40.0%
!! TACTGATTCCAAAGCACGAA+GGG + chr7_2:86339363-86339382 Msa1085560:CDS 40.0%
ACAGGACTTGTGTTTCTCAA+TGG - chr7_2:86339389-86339408 None:intergenic 40.0%
ATATTGTTCTTGGCCCTCTT+TGG + chr7_2:86339418-86339437 Msa1085560:CDS 40.0%
TGTCATACAGGAACCAAAGA+GGG - chr7_2:86339434-86339453 None:intergenic 40.0%
TTGTCATACAGGAACCAAAG+AGG - chr7_2:86339435-86339454 None:intergenic 40.0%
TGGTTCCTGTATGACAATTG+GGG + chr7_2:86339438-86339457 Msa1085560:CDS 40.0%
AGCTGATAACACTGGTAAAC+AGG - chr7_2:86339570-86339589 None:intergenic 40.0%
CCATATGAAGCTGATAACAC+TGG - chr7_2:86339578-86339597 None:intergenic 40.0%
CCAGTGTTATCAGCTTCATA+TGG + chr7_2:86339575-86339594 Msa1085560:intron 40.0%
TTAGCTACCAAGGATACTAC+TGG + chr7_2:86339679-86339698 Msa1085560:intron 40.0%
! ACCAAGGATACTACTGGTTA+AGG + chr7_2:86339685-86339704 Msa1085560:intron 40.0%
TCCTTAACCAGTAGTATCCT+TGG - chr7_2:86339689-86339708 None:intergenic 40.0%
GTATGTTGTGACGATGAAAC+TGG - chr7_2:86339862-86339881 None:intergenic 40.0%
TTCATCGTCACAACATACTC+GGG + chr7_2:86339864-86339883 Msa1085560:CDS 40.0%
TCCCTTTATGTCGAGTCAAT+TGG + chr7_2:86339958-86339977 Msa1085560:intron 40.0%
!! GACCAATTGACTCGACATAA+AGG - chr7_2:86339963-86339982 None:intergenic 40.0%
CGAGGATAATTGTGTATCCA+TGG + chr7_2:86340052-86340071 Msa1085560:intron 40.0%
GGATAATTGTGTATCCATGG+CGG + chr7_2:86340055-86340074 Msa1085560:intron 40.0%
GATAATTGTGTATCCATGGC+GGG + chr7_2:86340056-86340075 Msa1085560:intron 40.0%
TATGCTGTAATCATGCTGCA+TGG + chr7_2:86340201-86340220 Msa1085560:intron 40.0%
CAATTGAGCAAAAGGTCAAG+AGG - chr7_2:86340230-86340249 None:intergenic 40.0%
!!! GCTGTTTGGCTTTTGTTTGT+TGG + chr7_2:86340356-86340375 Msa1085560:CDS 40.0%
!! TTGGCTTTTGTTTGTTGGTG+TGG + chr7_2:86340361-86340380 Msa1085560:CDS 40.0%
!! CTTTTGTTTGTTGGTGTGGT+GGG + chr7_2:86340365-86340384 Msa1085560:CDS 40.0%
! TACAAATTTTGCAGGGTCAG+AGG + chr7_2:86340608-86340627 Msa1085560:intron 40.0%
TCTTAGAAATAAAGGGTGGC+AGG - chr7_2:86340913-86340932 None:intergenic 40.0%
GGCATCTTAGAAATAAAGGG+TGG - chr7_2:86340917-86340936 None:intergenic 40.0%
! TTGGTTAATGATGGAGAAGC+TGG - chr7_2:86341060-86341079 None:intergenic 40.0%
TGACATCGGAGATGTAAATC+TGG - chr7_2:86341145-86341164 None:intergenic 40.0%
TTTACATCTCCGATGTCAAC+TGG + chr7_2:86341147-86341166 Msa1085560:CDS 40.0%
! GATTTTCAGTCTAGCTGTGA+CGG + chr7_2:86341178-86341197 Msa1085560:CDS 40.0%
TTCAGAGACATGGTGAAGAT+TGG + chr7_2:86341206-86341225 Msa1085560:CDS 40.0%
GAACGATCATGCTAACTGAA+TGG - chr7_2:86341524-86341543 None:intergenic 40.0%
TTCACAATTTGTGGCAGGTT+TGG + chr7_2:86341583-86341602 Msa1085560:intron 40.0%
GCAGGTTTGGCTATAATATG+TGG + chr7_2:86341596-86341615 Msa1085560:intron 40.0%
!!! GTTATGTTTTGGCCTTGTTG+AGG + chr7_2:86341700-86341719 Msa1085560:CDS 40.0%
GTGTATGCTGCAATTTCACA+AGG + chr7_2:86341739-86341758 Msa1085560:CDS 40.0%
GTCATGCTTTCATGGCATTA+TGG + chr7_2:86341803-86341822 Msa1085560:CDS 40.0%
ATTTCAAGGGTAGCTGGAAT+TGG + chr7_2:86341905-86341924 Msa1085560:CDS 40.0%
TTTCAAGGGTAGCTGGAATT+GGG + chr7_2:86341906-86341925 Msa1085560:CDS 40.0%
!! GTGAAAGGTATCTCATAGGA+AGG + chr7_2:86342059-86342078 Msa1085560:CDS 40.0%
AGGTATCTCATAGGAAGGAT+TGG + chr7_2:86342064-86342083 Msa1085560:CDS 40.0%
GGTATCTCATAGGAAGGATT+GGG + chr7_2:86342065-86342084 Msa1085560:CDS 40.0%
CACTTTCCTCAATTACTGCT+GGG - chr7_2:86342357-86342376 None:intergenic 40.0%
TCACTTTCCTCAATTACTGC+TGG - chr7_2:86342358-86342377 None:intergenic 40.0%
! CTCACAGATTCTCCCATTTT+AGG - chr7_2:86342460-86342479 None:intergenic 40.0%
CTAAAATGGGAGAATCTGTG+AGG + chr7_2:86342458-86342477 Msa1085560:CDS 40.0%
! AGTGGTAGTGCCTATTTCTT+GGG + chr7_2:86342514-86342533 Msa1085560:CDS 40.0%
ATGTGACTGTCCCAAGAAAT+AGG - chr7_2:86342527-86342546 None:intergenic 40.0%
TCACATTTAGTGGTTCGTGA+TGG + chr7_2:86342541-86342560 Msa1085560:CDS 40.0%
ATCAGAACAGAACAGGAAGG+GGG - chr7_2:86338735-86338754 None:intergenic 45.0%
! CATGAAAAGGAGCTAGCCTA+GGG - chr7_2:86338875-86338894 None:intergenic 45.0%
! TCATGAAAAGGAGCTAGCCT+AGG - chr7_2:86338876-86338895 None:intergenic 45.0%
!! ATCGGCTTTGAGCACTATGA+TGG - chr7_2:86339115-86339134 None:intergenic 45.0%
GTGCTCAAAGCCGATGATAA+AGG + chr7_2:86339120-86339139 Msa1085560:CDS 45.0%
CAAAGCCGATGATAAAGGAG+AGG + chr7_2:86339125-86339144 Msa1085560:CDS 45.0%
CGTACCCTCTCCTTTATCAT+CGG - chr7_2:86339133-86339152 None:intergenic 45.0%
! TGGTTCTATCACAAGGGAGT+AGG - chr7_2:86339291-86339310 None:intergenic 45.0%
! AAAAAGCACGACCTCATCAG+TGG - chr7_2:86339311-86339330 None:intergenic 45.0%
!! TGATGAGGTCGTGCTTTTTG+AGG + chr7_2:86339312-86339331 Msa1085560:CDS 45.0%
TCAGAGATCCTTGTCAGACT+TGG + chr7_2:86339601-86339620 Msa1085560:CDS 45.0%
TAACTGTGCCAAGTCTGACA+AGG - chr7_2:86339612-86339631 None:intergenic 45.0%
! CCAATTTTATGTGTGCCGCA+GGG - chr7_2:86340314-86340333 None:intergenic 45.0%
CCTGCGGCACACATAAAATT+GGG + chr7_2:86340312-86340331 Msa1085560:CDS 45.0%
!! GCTTTTGTTTGTTGGTGTGG+TGG + chr7_2:86340364-86340383 Msa1085560:CDS 45.0%
TTGCTTGATCTATCCGCTTC+TGG + chr7_2:86340787-86340806 Msa1085560:CDS 45.0%
GCATAGCATATCACCAGAAG+CGG - chr7_2:86340803-86340822 None:intergenic 45.0%
GCTTCTGGTGATATGCTATG+CGG + chr7_2:86340802-86340821 Msa1085560:CDS 45.0%
CTTCTGGTGATATGCTATGC+GGG + chr7_2:86340803-86340822 Msa1085560:CDS 45.0%
TCAATCCGTACCACGTAAGT+TGG + chr7_2:86340880-86340899 Msa1085560:intron 45.0%
CGCTTTGCTAAAGTGATTGC+TGG + chr7_2:86340946-86340965 Msa1085560:intron 45.0%
AGCTGGCTGTTATAGTTGCT+TGG - chr7_2:86341043-86341062 None:intergenic 45.0%
TGCAATTTCACAAGGGAGCT+TGG + chr7_2:86341747-86341766 Msa1085560:CDS 45.0%
CTGTCATCGACACAACCAAA+AGG - chr7_2:86341784-86341803 None:intergenic 45.0%
CGATGACAGTCATGCTTTCA+TGG + chr7_2:86341795-86341814 Msa1085560:CDS 45.0%
TGGCTAATAGATGTCAGTCC+AGG + chr7_2:86341875-86341894 Msa1085560:CDS 45.0%
GGTCTCATTCAAGTCAATGC+CGG + chr7_2:86342018-86342037 Msa1085560:CDS 45.0%
CTTTCACTTTCGGGAACATG+AGG - chr7_2:86342046-86342065 None:intergenic 45.0%
CTCATGTTCCCGAAAGTGAA+AGG + chr7_2:86342044-86342063 Msa1085560:CDS 45.0%
! GATTAGCCCAGCAGTAATTG+AGG + chr7_2:86342348-86342367 Msa1085560:CDS 45.0%
TTAGGACTACTACTAGCAGG+AGG - chr7_2:86342442-86342461 None:intergenic 45.0%
AATGGGAGAATCTGTGAGGA+AGG + chr7_2:86342462-86342481 Msa1085560:CDS 45.0%
CTAATTGATGCAAGGGAGAG+TGG + chr7_2:86342496-86342515 Msa1085560:CDS 45.0%
! GAGTGGTAGTGCCTATTTCT+TGG + chr7_2:86342513-86342532 Msa1085560:CDS 45.0%
CTTGGGACAGTCACATTTAG+TGG + chr7_2:86342531-86342550 Msa1085560:CDS 45.0%
!! TGAGGGATTTTGAGAGCAAC+TGG - chr7_2:86342634-86342653 None:intergenic 45.0%
CTTCTACAAGAGCAGCATGA+GGG - chr7_2:86342651-86342670 None:intergenic 45.0%
ACTTCTACAAGAGCAGCATG+AGG - chr7_2:86342652-86342671 None:intergenic 45.0%
CATGCTGCTCTTGTAGAAGT+TGG + chr7_2:86342652-86342671 Msa1085560:CDS 45.0%
!! AAATGAAAATATAATTAAAT+GGG - chr7_2:86339506-86339525 None:intergenic 5.0%
!! AAAATGAAAATATAATTAAA+TGG - chr7_2:86339507-86339526 None:intergenic 5.0%
TCCTGCTGCTCATGACTCTA+AGG + chr7_2:86338783-86338802 Msa1085560:CDS 50.0%
ACCTTAGAGTCATGAGCAGC+AGG - chr7_2:86338787-86338806 None:intergenic 50.0%
AGCGCAAGATCTTGAATCCG+AGG + chr7_2:86339023-86339042 Msa1085560:CDS 50.0%
! TGTATACCACCTGAGAGTGC+TGG - chr7_2:86339478-86339497 None:intergenic 50.0%
ATAACACACGCAGAGGGAAC+AGG - chr7_2:86340266-86340285 None:intergenic 50.0%
CCCTGCGGCACACATAAAAT+TGG + chr7_2:86340311-86340330 Msa1085560:CDS 50.0%
! CCCAATTTTATGTGTGCCGC+AGG - chr7_2:86340315-86340334 None:intergenic 50.0%
! CCATTTTATGCGCAGCAGGT+GGG + chr7_2:86340501-86340520 Msa1085560:intron 50.0%
CTGGACCAACTTACGTGGTA+CGG - chr7_2:86340888-86340907 None:intergenic 50.0%
AAATAAAGGGTGGCAGGCAC+TGG - chr7_2:86340907-86340926 None:intergenic 50.0%
! TGCTGGTGATGACATACTGC+AGG + chr7_2:86340963-86340982 Msa1085560:intron 50.0%
TCCCTACTTTCTTCGGCTGT+CGG + chr7_2:86341014-86341033 Msa1085560:CDS 50.0%
TCCGACAGCCGAAGAAAGTA+GGG - chr7_2:86341018-86341037 None:intergenic 50.0%
TTCCGACAGCCGAAGAAAGT+AGG - chr7_2:86341019-86341038 None:intergenic 50.0%
TTCAGTCTAGCTGTGACGGT+TGG + chr7_2:86341182-86341201 Msa1085560:CDS 50.0%
!! GACGGTTGGTTTCAGAGACA+TGG + chr7_2:86341196-86341215 Msa1085560:CDS 50.0%
ATAGATGTCAGTCCAGGCCT+TGG + chr7_2:86341881-86341900 Msa1085560:CDS 50.0%
TAGATGTCAGTCCAGGCCTT+GGG + chr7_2:86341882-86341901 Msa1085560:CDS 50.0%
TCCAGGCCTTGGGATTTCAA+GGG + chr7_2:86341892-86341911 Msa1085560:CDS 50.0%
CAGCTACCCTTGAAATCCCA+AGG - chr7_2:86341901-86341920 None:intergenic 50.0%
CTTGGGATTTCAAGGGTAGC+TGG + chr7_2:86341899-86341918 Msa1085560:CDS 50.0%
! AAGGGACACGGGTGATTTTG+AGG + chr7_2:86342147-86342166 Msa1085560:CDS 50.0%
ATCTGTGAGGAAGGAGCTGT+TGG + chr7_2:86342471-86342490 Msa1085560:CDS 50.0%
!! GGGATTTTGAGAGCAACTGG+AGG - chr7_2:86342631-86342650 None:intergenic 50.0%
CTCAATGGCCCTTCGTGCTT+TGG - chr7_2:86339374-86339393 None:intergenic 55.0%
TGCGGCCCCAATTGTCATAC+AGG - chr7_2:86339446-86339465 None:intergenic 55.0%
GCAGAGGGAACAGGTACATC+TGG - chr7_2:86340257-86340276 None:intergenic 55.0%
!! AGCGCCATTTTATGCGCAGC+AGG + chr7_2:86340497-86340516 Msa1085560:CDS 55.0%
!! GCCATTTTATGCGCAGCAGG+TGG + chr7_2:86340500-86340519 Msa1085560:intron 55.0%
CCCACCTGCTGCGCATAAAA+TGG - chr7_2:86340504-86340523 None:intergenic 55.0%
GGGTCAGAGGCAATGTTTGC+AGG + chr7_2:86340621-86340640 Msa1085560:intron 55.0%
GAGGCAATGTTTGCAGGCCT+AGG + chr7_2:86340627-86340646 Msa1085560:CDS 55.0%
GGTGATATGCTATGCGGGTC+AGG + chr7_2:86340808-86340827 Msa1085560:CDS 55.0%
!! AGGCACTGGACCAACTTACG+TGG - chr7_2:86340893-86340912 None:intergenic 55.0%
TAACTGCACTGTGCCTGTGC+TGG - chr7_2:86341440-86341459 None:intergenic 55.0%
GTCCAGGCCTTGGGATTTCA+AGG + chr7_2:86341891-86341910 Msa1085560:CDS 55.0%
ACCCTTGAAATCCCAAGGCC+TGG - chr7_2:86341896-86341915 None:intergenic 55.0%
CTTTCGGGAACATGAGGCAC+CGG - chr7_2:86342040-86342059 None:intergenic 55.0%
!! GAGTGCTGGAGTGAGGACTG+CGG - chr7_2:86339464-86339483 None:intergenic 60.0%
GTCCTCACTCCAGCACTCTC+AGG + chr7_2:86339466-86339485 Msa1085560:CDS 60.0%
!! CACCTGAGAGTGCTGGAGTG+AGG - chr7_2:86339471-86339490 None:intergenic 60.0%
CTCACTCCAGCACTCTCAGG+TGG + chr7_2:86339469-86339488 Msa1085560:CDS 60.0%
CTGTTCGTGCTGCAGCCCTG+CGG + chr7_2:86340296-86340315 Msa1085560:CDS 65.0%
CGCAGGGCTGCAGCACGAAC+AGG - chr7_2:86340298-86340317 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 86338732 86342851 86338732 ID=Msa1085560;Name=Msa1085560
chr7_2 mRNA 86338732 86342851 86338732 ID=Msa1085560-mRNA-1;Parent=Msa1085560;Name=Msa1085560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=34|0.88|0.9|1|0.88|1|10|158|800
chr7_2 exon 86338732 86338804 86338732 ID=Msa1085560-mRNA-1:exon:23348;Parent=Msa1085560-mRNA-1
chr7_2 exon 86338922 86339147 86338922 ID=Msa1085560-mRNA-1:exon:23349;Parent=Msa1085560-mRNA-1
chr7_2 exon 86339239 86339490 86339239 ID=Msa1085560-mRNA-1:exon:23350;Parent=Msa1085560-mRNA-1
chr7_2 exon 86339579 86339632 86339579 ID=Msa1085560-mRNA-1:exon:23351;Parent=Msa1085560-mRNA-1
chr7_2 exon 86339863 86339913 86339863 ID=Msa1085560-mRNA-1:exon:23352;Parent=Msa1085560-mRNA-1
chr7_2 exon 86340258 86340518 86340258 ID=Msa1085560-mRNA-1:exon:23353;Parent=Msa1085560-mRNA-1
chr7_2 exon 86340622 86340674 86340622 ID=Msa1085560-mRNA-1:exon:23354;Parent=Msa1085560-mRNA-1
chr7_2 exon 86340776 86340893 86340776 ID=Msa1085560-mRNA-1:exon:23355;Parent=Msa1085560-mRNA-1
chr7_2 exon 86340985 86341239 86340985 ID=Msa1085560-mRNA-1:exon:23356;Parent=Msa1085560-mRNA-1
chr7_2 exon 86341600 86342851 86341600 ID=Msa1085560-mRNA-1:exon:23357;Parent=Msa1085560-mRNA-1
chr7_2 five_prime_UTR 86338732 86338765 86338732 ID=Msa1085560-mRNA-1:five_prime_utr;Parent=Msa1085560-mRNA-1
chr7_2 CDS 86338766 86338804 86338766 ID=Msa1085560-mRNA-1:cds;Parent=Msa1085560-mRNA-1
chr7_2 CDS 86338922 86339147 86338922 ID=Msa1085560-mRNA-1:cds;Parent=Msa1085560-mRNA-1
chr7_2 CDS 86339239 86339490 86339239 ID=Msa1085560-mRNA-1:cds;Parent=Msa1085560-mRNA-1
chr7_2 CDS 86339579 86339632 86339579 ID=Msa1085560-mRNA-1:cds;Parent=Msa1085560-mRNA-1
chr7_2 CDS 86339863 86339913 86339863 ID=Msa1085560-mRNA-1:cds;Parent=Msa1085560-mRNA-1
chr7_2 CDS 86340258 86340518 86340258 ID=Msa1085560-mRNA-1:cds;Parent=Msa1085560-mRNA-1
chr7_2 CDS 86340622 86340674 86340622 ID=Msa1085560-mRNA-1:cds;Parent=Msa1085560-mRNA-1
chr7_2 CDS 86340776 86340893 86340776 ID=Msa1085560-mRNA-1:cds;Parent=Msa1085560-mRNA-1
chr7_2 CDS 86340985 86341239 86340985 ID=Msa1085560-mRNA-1:cds;Parent=Msa1085560-mRNA-1
chr7_2 CDS 86341600 86342693 86341600 ID=Msa1085560-mRNA-1:cds;Parent=Msa1085560-mRNA-1
chr7_2 three_prime_UTR 86342694 86342851 86342694 ID=Msa1085560-mRNA-1:three_prime_utr;Parent=Msa1085560-mRNA-1
Gene Sequence

>Msa1085560

ATGGCTTCTCAACTGCATCCTGCTGCTCATGACTCTAAGAATAAAAGATGGAATCAAACAATTCTCTTGTCATTTCAAATTATTGGAATAGTTTATGGTCAACTTAGCACTGCTCCCTTATATGTATTCGGGACAATGCAAGCGCAAGATCTTGAATCCGAGGAAGTTGTTTATGAACTCTTCTCCTTCATTTTTTGGACTCTAACAACTATTTCTTTGATCAAGTATGCCATCATAGTGCTCAAAGCCGATGATAAAGGAGAGGGTGGTATTTTTGCTTTATACTCACTATTGTGTAGAAATGCAAAAGTTGGCCTACTCCCTTGTGATAGAACCACTGATGAGGTCGTGCTTTTTGAGGAGACAACAACTCCTTCTTCTAAGATTAATACTGATTCCAAAGCACGAAGGGCCATTGAGAAACACAAGTCCTGTCACTATTTGATATTGTTCTTGGCCCTCTTTGGTTCCTGTATGACAATTGGGGCCGCAGTCCTCACTCCAGCACTCTCAGGTGTGTTATCAGCTTCATATGGTGTTCAGAGATCCTTGTCAGACTTGGCACAGTTATTTTCATCGTCACAACATACTCGGGATTCCGTCTCAAATGTTCTACAAAAATATGTACCTGTTCCCTCTGCGTGTGTTATATTGATTGGCCTGTTCGTGCTGCAGCCCTGCGGCACACATAAAATTGGGTTCATGTTTGCTCCAATTATTGCTGTTTGGCTTTTGTTTGTTGGTGTGGTGGGAGCCTATAATATTTTCTTCTGGGATGTCAAAATTATCTATAAAATATCCCCACTATACCTGTTCAAATTCGTGAGGAATATTGATGTCAAAAGATGGAGATTATTAGGAAGCGCCATTTTATGCGCAGCAGGGTCAGAGGCAATGTTTGCAGGCCTAGGCCATTTTTCCAAGAAATCAATCAAGATTACATTTATTTGCTTGATCTATCCGCTTCTGGTGATATGCTATGCGGGTCAGGCTGCATATATCTCTAAAAACTTGAACACTCGAGATTTTAATCATCTTAGTCAATCCGTACCACGTCCATCCAAACATGTATTCATAGTATTGTCCCTACTTTCTTCGGCTGTCGGAAGCCAAGCAACTATAACAGCCAGCTTCTCCATCATTAACCAATGTCTAGCACTAAATTGTTTTCCCAGAGTAAAAGTCATTCACACATCAAAAACGATACATGGCCAGATTTACATCTCCGATGTCAACTGGTTATTGATGATTTTCAGTCTAGCTGTGACGGTTGGTTTCAGAGACATGGTGAAGATTGGCAACGCAACAAGTTTGGCTATAATATGTGGAATGCTTGTGACAACTAGTCTCATGTCACTAATCATTGCTTTGTATTGGGAGAAGAATTTGATGATATCTGCATGCTTTCTGTTATGTTTTGGCCTTGTTGAGGTTGCATATTTTTCGGCGTGTATGCTGCAATTTCACAAGGGAGCTTGGTATCTAGTTGTCCTTTTGGTTGTGTCGATGACAGTCATGCTTTCATGGCATTATGGAACAGTGAAGAAGTATGAGTTTGATTTGCAAAACAAGGTGTCAACTGAATGGCTAATAGATGTCAGTCCAGGCCTTGGGATTTCAAGGGTAGCTGGAATTGGGTTCATTTACACAGACATAGTAGCAGGAATCCCAGCTTTCTTTTCACATTTTATTACTAATCTTCCTGCATTTCATCAAGTGTTGATCATGGTCTCATTCAAGTCAATGCCGGTGCCTCATGTTCCCGAAAGTGAAAGGTATCTCATAGGAAGGATTGGGCCAAAAGATTATAAAATATATCGTTGCATTGTGAGATATGGATATTGTGATAATAATATAAGGGACACGGGTGATTTTGAGGAGAAAATCATTGGTGCTATAGGAGAATTCATTTCCATTGAACAGATGAGTGACATTGAATCAATGGTTTCGGCAGAAGAAAAAATGATGATAGTGGGAAATTCATCAGATGGAAATGCATTAGTCCCTTTGATGAATGATGAAACATGCAATGAAGTTAGCATTACTAATGAAGCTCAGATTAGCCCAGCAGTAATTGAGGAAAGTGATCATACATTGTTGGCGAGTAGTAGCTCTTGCAACAAAAGAAAAAAAGTACGGTTCATGTTGCCTCCTGCTAGTAGTAGTCCTAAAATGGGAGAATCTGTGAGGAAGGAGCTGTTGGAACTAATTGATGCAAGGGAGAGTGGTAGTGCCTATTTCTTGGGACAGTCACATTTAGTGGTTCGTGATGGCTCAAACTATCTCAAGAGATTCTTAATCATGGTTTTTCGTTTCTTTGAAAAGAATGGTCGTGAACCTCCAGTTGCTCTCAAAATCCCTCATGCTGCTCTTGTAGAAGTTGGTATGATATGTACTATATAA
Protein sequence

>Msa1085560

MASQLHPAAHDSKNKRWNQTILLSFQIIGIVYGQLSTAPLYVFGTMQAQDLESEEVVYELFSFIFWTLTTISLIKYAIIVLKADDKGEGGIFALYSLLCRNAKVGLLPCDRTTDEVVLFEETTTPSSKINTDSKARRAIEKHKSCHYLILFLALFGSCMTIGAAVLTPALSGVLSASYGVQRSLSDLAQLFSSSQHTRDSVSNVLQKYVPVPSACVILIGLFVLQPCGTHKIGFMFAPIIAVWLLFVGVVGAYNIFFWDVKIIYKISPLYLFKFVRNIDVKRWRLLGSAILCAAGSEAMFAGLGHFSKKSIKITFICLIYPLLVICYAGQAAYISKNLNTRDFNHLSQSVPRPSKHVFIVLSLLSSAVGSQATITASFSIINQCLALNCFPRVKVIHTSKTIHGQIYISDVNWLLMIFSLAVTVGFRDMVKIGNATSLAIICGMLVTTSLMSLIIALYWEKNLMISACFLLCFGLVEVAYFSACMLQFHKGAWYLVVLLVVSMTVMLSWHYGTVKKYEFDLQNKVSTEWLIDVSPGLGISRVAGIGFIYTDIVAGIPAFFSHFITNLPAFHQVLIMVSFKSMPVPHVPESERYLIGRIGPKDYKIYRCIVRYGYCDNNIRDTGDFEEKIIGAIGEFISIEQMSDIESMVSAEEKMMIVGNSSDGNALVPLMNDETCNEVSITNEAQISPAVIEESDHTLLASSSSCNKRKKVRFMLPPASSSPKMGESVRKELLELIDARESGSAYFLGQSHLVVRDGSNYLKRFLIMVFRFFEKNGREPPVALKIPHAALVEVGMICTI*