Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274510 | sp|Q8LAL2|IAA26_ARATH | 47.619 | 273 | 107 | 7 | 2 | 272 | 25 | 263 | 3.44e-67 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274510 | G7LGP3 | 95.971 | 273 | 9 | 1 | 1 | 273 | 1 | 271 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1274510 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa1274510 | 0.805100 | 1.571252e-49 | -8.615850e-47 |
| Msa0030480 | Msa1274510 | 0.814836 | 1.257499e-51 | -8.615850e-47 |
| Msa0030530 | Msa1274510 | 0.804392 | 2.208855e-49 | -8.615850e-47 |
| Msa0049750 | Msa1274510 | 0.809839 | 1.551943e-50 | -8.615850e-47 |
| Msa0081940 | Msa1274510 | 0.803553 | 3.300370e-49 | -8.615850e-47 |
| Msa0082050 | Msa1274510 | 0.809549 | 1.791541e-50 | -8.615850e-47 |
| Msa0096700 | Msa1274510 | 0.832154 | 1.111696e-55 | -8.615850e-47 |
| Msa0098990 | Msa1274510 | 0.801608 | 8.308044e-49 | -8.615850e-47 |
| Msa0647030 | Msa1274510 | 0.828808 | 7.317658e-55 | -8.615850e-47 |
| Msa0658680 | Msa1274510 | 0.825482 | 4.575175e-54 | -8.615850e-47 |
| Msa0763890 | Msa1274510 | 0.803670 | 3.120773e-49 | -8.615850e-47 |
| Msa0763920 | Msa1274510 | 0.806486 | 8.036497e-50 | -8.615850e-47 |
| Msa0136550 | Msa1274510 | 0.804877 | 1.748962e-49 | -8.615850e-47 |
| Msa0138020 | Msa1274510 | 0.802464 | 5.540598e-49 | -8.615850e-47 |
| Msa1231810 | Msa1274510 | 0.832506 | 9.093089e-56 | -8.615850e-47 |
| Msa1236440 | Msa1274510 | 0.815092 | 1.103362e-51 | -8.615850e-47 |
| Msa1270660 | Msa1274510 | 0.820085 | 8.262950e-53 | -8.615850e-47 |
| Msa1270730 | Msa1274510 | 0.802005 | 6.886932e-49 | -8.615850e-47 |
| Msa1274510 | Msa1277670 | 0.806911 | 6.534688e-50 | -8.615850e-47 |
| Msa1274510 | Msa1312500 | 0.829517 | 4.925277e-55 | -8.615850e-47 |
| Msa1274510 | Msa1335230 | 0.804848 | 1.774172e-49 | -8.615850e-47 |
| Msa1274510 | Msa1397120 | 0.802456 | 5.563444e-49 | -8.615850e-47 |
| Msa1274510 | Msa1401460 | 0.801957 | 7.046611e-49 | -8.615850e-47 |
| Msa1274510 | Msa1437330 | 0.835150 | 1.983653e-56 | -8.615850e-47 |
| Msa1274510 | Msa1440790 | 0.815508 | 8.917618e-52 | -8.615850e-47 |
| Msa0382310 | Msa1274510 | 0.819789 | 9.655875e-53 | -8.615850e-47 |
| Msa0392270 | Msa1274510 | 0.801528 | 8.631026e-49 | -8.615850e-47 |
| Msa0403490 | Msa1274510 | 0.829480 | 5.028110e-55 | -8.615850e-47 |
| Msa0427580 | Msa1274510 | 0.815333 | 9.753281e-52 | -8.615850e-47 |
| Msa0430060 | Msa1274510 | 0.804339 | 2.265486e-49 | -8.615850e-47 |
| Msa0431210 | Msa1274510 | 0.810474 | 1.132458e-50 | -8.615850e-47 |
| Msa0471900 | Msa1274510 | 0.809599 | 1.747223e-50 | -8.615850e-47 |
| Msa0992580 | Msa1274510 | 0.811078 | 8.379495e-51 | -8.615850e-47 |
| Msa1026640 | Msa1274510 | 0.825898 | 3.647275e-54 | -8.615850e-47 |
| Msa0300150 | Msa1274510 | 0.802659 | 5.052112e-49 | -8.615850e-47 |
| Msa0308440 | Msa1274510 | 0.836087 | 1.149276e-56 | -8.615850e-47 |
| Msa1107260 | Msa1274510 | 0.814583 | 1.431262e-51 | -8.615850e-47 |
| Msa1126240 | Msa1274510 | 0.801694 | 7.977954e-49 | -8.615850e-47 |
| Msa1158390 | Msa1274510 | 0.821893 | 3.168502e-53 | -8.615850e-47 |
| Msa1180670 | Msa1274510 | 0.902831 | 6.481458e-79 | -8.615850e-47 |
| Msa1187590 | Msa1274510 | 0.805797 | 1.122374e-49 | -8.615850e-47 |
| Msa1209190 | Msa1274510 | 0.825740 | 3.975745e-54 | -8.615850e-47 |
| Msa0518170 | Msa1274510 | 0.803374 | 3.593403e-49 | -8.615850e-47 |
| Msa0520270 | Msa1274510 | 0.808609 | 2.847206e-50 | -8.615850e-47 |
| Msa0566350 | Msa1274510 | 0.800527 | 1.382497e-48 | -8.615850e-47 |
| Msa0583670 | Msa1274510 | 0.803505 | 3.376825e-49 | -8.615850e-47 |
| Msa0871430 | Msa1274510 | 0.804856 | 1.766744e-49 | -8.615850e-47 |
| Msa0958030 | Msa1274510 | 0.814905 | 1.213868e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274510 | MtrunA17_Chr8g0340731 | 95.971 | 273 | 9 | 1 | 1 | 273 | 1 | 271 | 0.0 | 533 |
| Msa1274510 | MtrunA17_Chr2g0330951 | 55.036 | 278 | 99 | 8 | 4 | 273 | 6 | 265 | 5.38e-86 | 258 |
| Msa1274510 | MtrunA17_Chr5g0411501 | 38.916 | 203 | 101 | 6 | 60 | 262 | 140 | 319 | 1.03e-33 | 125 |
| Msa1274510 | MtrunA17_Chr8g0366881 | 39.773 | 176 | 88 | 3 | 88 | 262 | 174 | 332 | 6.10e-33 | 123 |
| Msa1274510 | MtrunA17_Chr6g0486121 | 34.457 | 267 | 131 | 8 | 3 | 262 | 9 | 238 | 7.43e-33 | 120 |
| Msa1274510 | MtrunA17_Chr1g0183251 | 39.548 | 177 | 86 | 5 | 105 | 262 | 78 | 252 | 8.94e-32 | 118 |
| Msa1274510 | MtrunA17_Chr1g0184791 | 39.877 | 163 | 85 | 2 | 97 | 259 | 77 | 226 | 1.28e-30 | 114 |
| Msa1274510 | MtrunA17_Chr5g0428141 | 44.444 | 153 | 67 | 5 | 110 | 262 | 197 | 331 | 1.55e-30 | 117 |
| Msa1274510 | MtrunA17_Chr2g0331411 | 41.401 | 157 | 77 | 3 | 106 | 262 | 169 | 310 | 8.90e-30 | 114 |
| Msa1274510 | MtrunA17_Chr8g0390281 | 36.548 | 197 | 95 | 5 | 76 | 262 | 101 | 277 | 1.06e-29 | 113 |
| Msa1274510 | MtrunA17_Chr1g0187921 | 36.216 | 185 | 78 | 4 | 90 | 262 | 64 | 220 | 2.37e-29 | 111 |
| Msa1274510 | MtrunA17_Chr1g0190711 | 42.675 | 157 | 77 | 5 | 106 | 262 | 94 | 237 | 4.12e-29 | 110 |
| Msa1274510 | MtrunA17_Chr1g0166011 | 36.585 | 164 | 62 | 4 | 106 | 269 | 64 | 185 | 4.30e-27 | 103 |
| Msa1274510 | MtrunA17_Chr1g0187961 | 38.889 | 162 | 53 | 6 | 105 | 262 | 55 | 174 | 5.52e-27 | 103 |
| Msa1274510 | MtrunA17_Chr7g0260621 | 34.946 | 186 | 76 | 6 | 83 | 262 | 51 | 197 | 5.68e-27 | 103 |
| Msa1274510 | MtrunA17_Chr1g0184801 | 31.298 | 262 | 105 | 9 | 5 | 262 | 7 | 197 | 4.10e-26 | 101 |
| Msa1274510 | MtrunA17_Chr7g0260641 | 36.364 | 165 | 87 | 4 | 95 | 259 | 85 | 231 | 1.24e-23 | 96.3 |
| Msa1274510 | MtrunA17_Chr4g0004181 | 33.529 | 170 | 68 | 3 | 102 | 271 | 47 | 171 | 3.53e-20 | 85.5 |
| Msa1274510 | MtrunA17_Chr4g0069561 | 37.500 | 104 | 49 | 1 | 157 | 260 | 94 | 181 | 1.82e-18 | 80.9 |
| Msa1274510 | MtrunA17_Chr7g0270851 | 37.255 | 102 | 49 | 1 | 158 | 259 | 69 | 155 | 9.46e-18 | 78.6 |
| Msa1274510 | MtrunA17_Chr1g0193861 | 34.259 | 108 | 56 | 2 | 152 | 259 | 78 | 170 | 9.93e-18 | 78.6 |
| Msa1274510 | MtrunA17_Chr2g0332141 | 36.893 | 103 | 58 | 1 | 159 | 261 | 8 | 103 | 3.54e-17 | 75.9 |
| Msa1274510 | MtrunA17_Chr3g0137601 | 26.744 | 172 | 85 | 4 | 100 | 262 | 70 | 209 | 3.20e-14 | 70.1 |
| Msa1274510 | MtrunA17_Chr7g0239061 | 32.143 | 112 | 54 | 1 | 160 | 271 | 573 | 662 | 4.60e-14 | 72.0 |
| Msa1274510 | MtrunA17_Chr1g0209181 | 39.604 | 101 | 44 | 2 | 159 | 259 | 85 | 168 | 2.72e-13 | 66.6 |
| Msa1274510 | MtrunA17_Chr4g0064131 | 26.797 | 153 | 73 | 5 | 109 | 260 | 92 | 206 | 3.38e-13 | 67.0 |
| Msa1274510 | MtrunA17_Chr8g0385791 | 27.972 | 143 | 73 | 4 | 130 | 270 | 688 | 802 | 1.47e-11 | 64.7 |
| Msa1274510 | MtrunA17_Chr8g0346711 | 30.769 | 104 | 50 | 1 | 160 | 263 | 561 | 642 | 4.39e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274510 | AT3G16500.1 | 47.619 | 273 | 107 | 7 | 2 | 272 | 25 | 263 | 3.50e-68 | 213 |
| Msa1274510 | AT3G16500.2 | 48.289 | 263 | 101 | 6 | 2 | 263 | 25 | 253 | 6.18e-68 | 212 |
| Msa1274510 | AT1G51950.1 | 44.891 | 274 | 91 | 8 | 2 | 263 | 26 | 251 | 1.35e-61 | 196 |
| Msa1274510 | AT5G25890.1 | 43.605 | 172 | 57 | 3 | 101 | 272 | 40 | 171 | 5.88e-36 | 127 |
| Msa1274510 | AT2G33310.3 | 40.107 | 187 | 91 | 4 | 82 | 262 | 55 | 226 | 3.83e-33 | 121 |
| Msa1274510 | AT2G33310.1 | 40.107 | 187 | 91 | 4 | 82 | 262 | 55 | 226 | 3.83e-33 | 121 |
| Msa1274510 | AT2G33310.2 | 40.107 | 187 | 92 | 4 | 82 | 262 | 55 | 227 | 1.11e-32 | 120 |
| Msa1274510 | AT4G29080.1 | 36.683 | 199 | 109 | 4 | 69 | 262 | 103 | 289 | 1.61e-32 | 121 |
| Msa1274510 | AT4G28640.1 | 40.506 | 158 | 80 | 4 | 110 | 262 | 89 | 237 | 2.63e-31 | 117 |
| Msa1274510 | AT4G28640.3 | 40.506 | 158 | 80 | 4 | 110 | 262 | 89 | 237 | 4.78e-31 | 116 |
| Msa1274510 | AT2G22670.5 | 44.025 | 159 | 70 | 7 | 106 | 262 | 162 | 303 | 7.26e-31 | 117 |
| Msa1274510 | AT2G22670.2 | 44.025 | 159 | 70 | 7 | 106 | 262 | 162 | 303 | 7.26e-31 | 117 |
| Msa1274510 | AT2G22670.3 | 44.025 | 159 | 70 | 7 | 106 | 262 | 162 | 303 | 8.72e-31 | 117 |
| Msa1274510 | AT2G22670.1 | 44.025 | 159 | 70 | 7 | 106 | 262 | 162 | 303 | 8.72e-31 | 117 |
| Msa1274510 | AT2G22670.4 | 44.025 | 159 | 70 | 7 | 106 | 262 | 179 | 320 | 1.06e-30 | 117 |
| Msa1274510 | AT4G28640.2 | 41.772 | 158 | 78 | 4 | 110 | 262 | 89 | 237 | 1.38e-30 | 116 |
| Msa1274510 | AT1G04240.1 | 33.654 | 208 | 89 | 6 | 68 | 269 | 24 | 188 | 2.68e-29 | 110 |
| Msa1274510 | AT1G04550.2 | 37.222 | 180 | 90 | 5 | 90 | 262 | 56 | 219 | 1.53e-28 | 109 |
| Msa1274510 | AT1G04240.2 | 33.654 | 208 | 89 | 6 | 68 | 269 | 124 | 288 | 2.14e-28 | 110 |
| Msa1274510 | AT5G65670.2 | 38.365 | 159 | 78 | 4 | 106 | 262 | 180 | 320 | 2.83e-28 | 110 |
| Msa1274510 | AT5G65670.1 | 38.608 | 158 | 79 | 4 | 106 | 262 | 180 | 320 | 3.14e-28 | 110 |
| Msa1274510 | AT1G04250.1 | 37.288 | 177 | 79 | 3 | 91 | 262 | 64 | 213 | 1.17e-27 | 107 |
| Msa1274510 | AT1G04100.1 | 37.888 | 161 | 89 | 3 | 111 | 261 | 95 | 254 | 1.32e-27 | 107 |
| Msa1274510 | AT4G14550.1 | 37.580 | 157 | 81 | 2 | 106 | 262 | 73 | 212 | 1.16e-26 | 104 |
| Msa1274510 | AT4G14550.2 | 37.805 | 164 | 83 | 3 | 106 | 269 | 73 | 217 | 1.23e-26 | 104 |
| Msa1274510 | AT5G43700.1 | 32.663 | 199 | 85 | 5 | 82 | 269 | 24 | 184 | 2.46e-26 | 102 |
| Msa1274510 | AT3G04730.1 | 38.217 | 157 | 94 | 2 | 106 | 262 | 67 | 220 | 1.46e-25 | 101 |
| Msa1274510 | AT3G15540.1 | 37.952 | 166 | 58 | 5 | 106 | 268 | 67 | 190 | 3.10e-25 | 99.8 |
| Msa1274510 | AT3G23050.1 | 35.329 | 167 | 79 | 4 | 106 | 262 | 79 | 226 | 1.98e-24 | 98.6 |
| Msa1274510 | AT3G23030.1 | 36.709 | 158 | 53 | 3 | 110 | 267 | 61 | 171 | 3.06e-24 | 96.3 |
| Msa1274510 | AT3G23030.2 | 36.709 | 158 | 53 | 3 | 110 | 267 | 148 | 258 | 1.32e-23 | 97.1 |
| Msa1274510 | AT1G52830.1 | 32.979 | 188 | 77 | 6 | 81 | 268 | 48 | 186 | 1.10e-20 | 87.4 |
| Msa1274510 | AT2G46990.1 | 41.284 | 109 | 48 | 2 | 153 | 261 | 80 | 172 | 1.47e-20 | 86.7 |
| Msa1274510 | AT3G62100.1 | 40.741 | 108 | 48 | 2 | 153 | 260 | 78 | 169 | 2.92e-20 | 85.9 |
| Msa1274510 | AT4G14550.3 | 35.714 | 140 | 73 | 2 | 106 | 245 | 73 | 195 | 7.06e-20 | 85.5 |
| Msa1274510 | AT3G17600.1 | 32.927 | 164 | 67 | 6 | 96 | 259 | 34 | 154 | 4.65e-19 | 82.0 |
| Msa1274510 | AT3G23050.2 | 33.113 | 151 | 72 | 4 | 106 | 246 | 79 | 210 | 1.86e-17 | 79.3 |
| Msa1274510 | AT1G15580.1 | 34.416 | 154 | 55 | 5 | 108 | 261 | 52 | 159 | 4.65e-17 | 77.0 |
| Msa1274510 | AT4G14560.1 | 33.750 | 160 | 61 | 3 | 106 | 265 | 52 | 166 | 7.83e-17 | 76.6 |
| Msa1274510 | AT3G62100.2 | 39.785 | 93 | 40 | 2 | 153 | 245 | 78 | 154 | 2.01e-13 | 67.0 |
| Msa1274510 | AT2G46990.2 | 39.785 | 93 | 40 | 2 | 153 | 245 | 80 | 156 | 3.26e-13 | 66.2 |
| Msa1274510 | AT1G04550.1 | 34.513 | 113 | 61 | 3 | 90 | 195 | 56 | 162 | 3.73e-12 | 63.9 |
| Msa1274510 | AT2G01200.2 | 33.333 | 108 | 55 | 2 | 155 | 262 | 96 | 186 | 8.72e-12 | 63.2 |
| Msa1274510 | AT2G01200.1 | 33.333 | 108 | 55 | 2 | 155 | 262 | 96 | 186 | 8.72e-12 | 63.2 |
| Msa1274510 | AT4G32280.1 | 26.901 | 171 | 83 | 5 | 108 | 259 | 93 | 240 | 1.09e-11 | 63.9 |
| Msa1274510 | AT4G14550.4 | 35.632 | 87 | 42 | 1 | 106 | 192 | 73 | 145 | 1.68e-11 | 62.0 |
| Msa1274510 | AT1G15050.2 | 31.731 | 104 | 54 | 3 | 159 | 262 | 62 | 148 | 4.12e-11 | 60.5 |
| Msa1274510 | AT1G15050.1 | 31.731 | 104 | 54 | 3 | 159 | 262 | 94 | 180 | 5.47e-11 | 60.8 |
| Msa1274510 | AT4G32280.2 | 26.708 | 161 | 82 | 3 | 114 | 259 | 59 | 198 | 5.61e-11 | 61.2 |
Find 93 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGATAAACCTTTCTTTA+AGG | 0.081833 | 8_3:+8278412 | None:intergenic |
| TTACATTCACACACAATATT+TGG | 0.133960 | 8_3:+8275077 | None:intergenic |
| ATCATTATTATAGGTTCTTT+TGG | 0.209465 | 8_3:-8278396 | Msa1274510:five_prime_UTR |
| TTGCATTCATACACATTATT+AGG | 0.225646 | 8_3:+8275264 | None:intergenic |
| TACAGCTTGGTCAACGATTC+AGG | 0.239620 | 8_3:-8278728 | Msa1274510:intron |
| TTTGGTTTCACACGCTTAAA+TGG | 0.243122 | 8_3:+8278548 | None:intergenic |
| GAAAGGTTTATCATTATTAT+AGG | 0.245104 | 8_3:-8278405 | Msa1274510:five_prime_UTR |
| CTTCATTAATGAAAATAAAA+AGG | 0.250183 | 8_3:+8275054 | None:intergenic |
| ACTTGTTTCAATCTAGAAAA+AGG | 0.257361 | 8_3:-8278330 | Msa1274510:five_prime_UTR |
| GAAATTCAGCTTTACCAAAT+AGG | 0.279321 | 8_3:-8277992 | Msa1274510:CDS |
| CCTTTACCAGAGTTGCTAAT+AGG | 0.291470 | 8_3:+8277423 | None:intergenic |
| GAACAAATTCAAAGGAAATA+AGG | 0.316814 | 8_3:+8278483 | None:intergenic |
| ATCCGTGTGCTGAAAGCTTT+GGG | 0.326781 | 8_3:-8274997 | Msa1274510:three_prime_UTR |
| ATCAATGCAAGTGATGAAAA+AGG | 0.328321 | 8_3:-8278090 | Msa1274510:CDS |
| AAGCCACAAGTGTTCTTTAG+AGG | 0.328372 | 8_3:-8278258 | Msa1274510:CDS |
| GGCCTCCGATTCGTTCATTC+AGG | 0.338350 | 8_3:-8277533 | Msa1274510:CDS |
| TAATCTACTTTAGCCCAAAA+AGG | 0.354066 | 8_3:+8275307 | None:intergenic |
| ATTATCAACGTTTACCTTCA+AGG | 0.362322 | 8_3:+8277286 | None:intergenic |
| AATATGGATGGAGTTCCTAT+TGG | 0.394972 | 8_3:-8277384 | Msa1274510:CDS |
| TATCCGTGTGCTGAAAGCTT+TGG | 0.395520 | 8_3:-8274998 | Msa1274510:three_prime_UTR |
| CTTCAAGGAGACCTCTAAAT+AGG | 0.400379 | 8_3:+8277301 | None:intergenic |
| GCTGTTGATGACCTATTTAG+AGG | 0.418459 | 8_3:-8277312 | Msa1274510:CDS |
| CTTGAGCTCAAGACTTGGAT+TGG | 0.420807 | 8_3:-8275207 | Msa1274510:three_prime_UTR |
| AAGCGTGTGAAACCAAAGTT+AGG | 0.420992 | 8_3:-8278542 | Msa1274510:five_prime_UTR |
| ATGGAATAGTTGCCTAACTT+TGG | 0.430912 | 8_3:+8278530 | None:intergenic |
| GAAGGAGACAAGATGCTTGT+AGG | 0.431752 | 8_3:-8276550 | Msa1274510:CDS |
| AAGCAAGAGGAAGAAGATAA+AGG | 0.433944 | 8_3:-8276628 | Msa1274510:CDS |
| AGCAGGAAGATCAGAACTCT+TGG | 0.434060 | 8_3:+8276188 | None:intergenic |
| CTATTTAGAGGTCTCCTTGA+AGG | 0.443321 | 8_3:-8277300 | Msa1274510:intron |
| AAAGGATCATTGACTGGAAG+TGG | 0.456184 | 8_3:-8276601 | Msa1274510:CDS |
| ATATGGATGGAGTTCCTATT+GGG | 0.456891 | 8_3:-8277383 | Msa1274510:CDS |
| TCATTAATGAAGATTTAAGT+TGG | 0.456981 | 8_3:-8275043 | Msa1274510:three_prime_UTR |
| GCTGAATTTCTTGCAGAAGA+AGG | 0.458077 | 8_3:+8278005 | None:intergenic |
| GCCTACTGAGTCCCGGCCTA+TGG | 0.466050 | 8_3:-8277478 | Msa1274510:CDS |
| CTATGATACAGATGTCTCTT+CGG | 0.468482 | 8_3:+8278891 | None:intergenic |
| CTTTGCATTGCCGAGTCAAG+TGG | 0.471854 | 8_3:+8275390 | None:intergenic |
| CTTGTTTGTGAAGATCAATA+TGG | 0.475066 | 8_3:-8277400 | Msa1274510:CDS |
| AAGGAGACAAGATGCTTGTA+GGG | 0.476173 | 8_3:-8276549 | Msa1274510:CDS |
| TTCTTTAGAGGAGAGGAAGT+TGG | 0.479218 | 8_3:-8278246 | Msa1274510:CDS |
| ATTGACATCAATGCTTATGA+TGG | 0.483130 | 8_3:-8277354 | Msa1274510:CDS |
| CCTATTAGCAACTCTGGTAA+AGG | 0.483714 | 8_3:-8277423 | Msa1274510:CDS |
| CTTGTTTATGAAGATAATGA+AGG | 0.488627 | 8_3:-8276568 | Msa1274510:CDS |
| AACAAACCTATTAGCAACTC+TGG | 0.489814 | 8_3:-8277429 | Msa1274510:CDS |
| GAAGAAGATAAAGGCATCAA+AGG | 0.503044 | 8_3:-8276619 | Msa1274510:CDS |
| GCAGAGATAAATTTATCTCA+TGG | 0.505424 | 8_3:-8276661 | Msa1274510:intron |
| ATCGGAGGCCAACCTACTAC+TGG | 0.509519 | 8_3:+8277546 | None:intergenic |
| GAGCTTAGACTTGGTCCACC+TGG | 0.509843 | 8_3:-8278224 | Msa1274510:CDS |
| GAAACACTAAAACAATTAAA+CGG | 0.513357 | 8_3:-8278820 | Msa1274510:five_prime_UTR |
| ATGATATTTGATGCATCACT+AGG | 0.521075 | 8_3:-8275118 | Msa1274510:three_prime_UTR |
| AGGAAGGATGAGGCTGTTTG+AGG | 0.522837 | 8_3:-8275369 | Msa1274510:three_prime_UTR |
| GAAGAATCATCACTCACTCT+TGG | 0.524837 | 8_3:-8278146 | Msa1274510:CDS |
| GGCATCAAAGGATCATTGAC+TGG | 0.528381 | 8_3:-8276607 | Msa1274510:CDS |
| CATTGATTAAAGTTACAGCT+TGG | 0.534419 | 8_3:-8278741 | Msa1274510:five_prime_UTR |
| TTCTTCCTGAATGAACGAAT+CGG | 0.538928 | 8_3:+8277528 | None:intergenic |
| TACCAAATAGGTCTCAGAAA+AGG | 0.539367 | 8_3:-8277980 | Msa1274510:intron |
| AGGAAGTTGGAGCTTAGACT+TGG | 0.541596 | 8_3:-8278233 | Msa1274510:CDS |
| AATGCTGCTAGTCCAGTAGT+AGG | 0.545474 | 8_3:-8277558 | Msa1274510:CDS |
| CTGCTAGTCCAGTAGTAGGT+TGG | 0.549015 | 8_3:-8277554 | Msa1274510:CDS |
| TGCTTGTAGGGGACGTGCCG+TGG | 0.551530 | 8_3:-8276537 | Msa1274510:CDS |
| GGTAGCAAGAAAGACTAGAT+TGG | 0.556928 | 8_3:-8275422 | Msa1274510:exon |
| TTGACAAACTCTTCTTCACC+AGG | 0.560561 | 8_3:+8278206 | None:intergenic |
| CCTTGTCTTGAACCATAGGC+CGG | 0.561981 | 8_3:+8277466 | None:intergenic |
| AACCCAAAGCTTTCAGCACA+CGG | 0.566484 | 8_3:+8274995 | None:intergenic |
| CCGGCCTATGGTTCAAGACA+AGG | 0.569410 | 8_3:-8277466 | Msa1274510:CDS |
| TTCAGGAAGAACATTGCAAG+TGG | 0.570187 | 8_3:-8277516 | Msa1274510:CDS |
| TAAAACTCACGGTTAAAAGC+AGG | 0.572204 | 8_3:+8276171 | None:intergenic |
| TCTTGCAAGTTTGTGCAACA+AGG | 0.574470 | 8_3:+8278050 | None:intergenic |
| CTATTCCATGCTATATTCTG+TGG | 0.576490 | 8_3:-8278516 | Msa1274510:five_prime_UTR |
| ATAACCTTGTCTTGAACCAT+AGG | 0.576939 | 8_3:+8277462 | None:intergenic |
| ATGTTCTTGAGCTCAAGACT+TGG | 0.578024 | 8_3:-8275212 | Msa1274510:three_prime_UTR |
| TATATATTCTACTAATGTAG+AGG | 0.580032 | 8_3:-8275158 | Msa1274510:three_prime_UTR |
| ACAAGTGTTCTTTAGAGGAG+AGG | 0.582697 | 8_3:-8278253 | Msa1274510:CDS |
| CACTTGACTCGGCAATGCAA+AGG | 0.589695 | 8_3:-8275389 | Msa1274510:three_prime_UTR |
| TGGAATTAACAAGAAGCAAG+AGG | 0.591043 | 8_3:-8276641 | Msa1274510:CDS |
| GGCAATGCAAAGGAAGGATG+AGG | 0.594384 | 8_3:-8275379 | Msa1274510:three_prime_UTR |
| AGTGAACAGAACAAATTCAA+AGG | 0.595215 | 8_3:+8278475 | None:intergenic |
| TGACTCGGCAATGCAAAGGA+AGG | 0.598328 | 8_3:-8275385 | Msa1274510:three_prime_UTR |
| CTTGTCTTGAACCATAGGCC+GGG | 0.603934 | 8_3:+8277467 | None:intergenic |
| GTACATTAGACCACTTGACT+CGG | 0.608065 | 8_3:-8275400 | Msa1274510:three_prime_UTR |
| CTAAGCAGCCTACTGAGTCC+CGG | 0.610465 | 8_3:-8277485 | Msa1274510:CDS |
| TTTGTGAAGATCAATATGGA+TGG | 0.610573 | 8_3:-8277396 | Msa1274510:CDS |
| ATATATTCTACTAATGTAGA+GGG | 0.617162 | 8_3:-8275157 | Msa1274510:three_prime_UTR |
| TGTTTGTATCCACAGTGAAG+AGG | 0.617893 | 8_3:-8276221 | Msa1274510:CDS |
| TGATAAGATACTTACTGCCA+CGG | 0.622281 | 8_3:+8276520 | None:intergenic |
| ATGAGCCACAGAATATAGCA+TGG | 0.623301 | 8_3:+8278511 | None:intergenic |
| TGTTGCACAAACTTGCAAGA+TGG | 0.633974 | 8_3:-8278047 | Msa1274510:CDS |
| AAGACTTGGATTGGATGCTG+AGG | 0.634139 | 8_3:-8275198 | Msa1274510:three_prime_UTR |
| TGATATTTGATGCATCACTA+GGG | 0.637267 | 8_3:-8275117 | Msa1274510:three_prime_UTR |
| TTCCTGAATGAACGAATCGG+AGG | 0.657416 | 8_3:+8277531 | None:intergenic |
| TCTCCTCTAAAGAACACTTG+TGG | 0.666886 | 8_3:+8278255 | None:intergenic |
| ACAAACTCTTCTTCACCAGG+TGG | 0.675573 | 8_3:+8278209 | None:intergenic |
| AGGAGACAAGATGCTTGTAG+GGG | 0.714162 | 8_3:-8276548 | Msa1274510:CDS |
| CACACGCAGCCTCTTCACTG+TGG | 0.724956 | 8_3:+8276212 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGATTTAAATTGTTGT+TGG | - | chr8_3:8276080-8276099 | Msa1274510:intron | 15.0% |
| !!! | GTATATTTTTAATGATCTAA+CGG | + | chr8_3:8277100-8277119 | None:intergenic | 15.0% |
| !! | TTAAAACAAAATTCACTTAA+AGG | + | chr8_3:8277159-8277178 | None:intergenic | 15.0% |
| !!! | ACTATAGTTTTAAAAAACAA+AGG | + | chr8_3:8277487-8277506 | None:intergenic | 15.0% |
| !!! | TAATTTTTAATGTGTATGTT+TGG | - | chr8_3:8277638-8277657 | Msa1274510:intron | 15.0% |
| !!! | AAAAACTAATAGTTCTTTTA+AGG | + | chr8_3:8277819-8277838 | None:intergenic | 15.0% |
| !! | AATTGTATATGAAATTTATG+AGG | - | chr8_3:8277943-8277962 | Msa1274510:intron | 15.0% |
| !! | CTTCATTAATGAAAATAAAA+AGG | + | chr8_3:8278836-8278855 | None:intergenic | 15.0% |
| !!! | TATTTTTTTCTCAGTTTGAA+CGG | + | chr8_3:8275042-8275061 | None:intergenic | 20.0% |
| !! | GAAACACTAAAACAATTAAA+CGG | - | chr8_3:8275067-8275086 | Msa1274510:three_prime_UTR | 20.0% |
| !! | CAATGTTATAAAAACTGATT+TGG | + | chr8_3:8275131-8275150 | None:intergenic | 20.0% |
| !! | TAATGATAAACCTTTCTTTA+AGG | + | chr8_3:8275478-8275497 | None:intergenic | 20.0% |
| !! | GAAAGGTTTATCATTATTAT+AGG | - | chr8_3:8275482-8275501 | Msa1274510:intron | 20.0% |
| !!! | ATCATTATTATAGGTTCTTT+TGG | - | chr8_3:8275491-8275510 | Msa1274510:intron | 20.0% |
| !!! | TCATTATTATAGGTTCTTTT+GGG | - | chr8_3:8275492-8275511 | Msa1274510:intron | 20.0% |
| !!! | TATTTGTCTTCTTTTATGTA+GGG | - | chr8_3:8276239-8276258 | Msa1274510:intron | 20.0% |
| !!! | TTCACCAAACAAATATTTTA+AGG | - | chr8_3:8277020-8277039 | Msa1274510:intron | 20.0% |
| !! | TTGTCCTTAAAATATTTGTT+TGG | + | chr8_3:8277027-8277046 | None:intergenic | 20.0% |
| !! | AATGCTTTAGTTATGATAAT+TGG | - | chr8_3:8277592-8277611 | Msa1274510:intron | 20.0% |
| !! | AGTTAAAAAACTAAAACTCA+CGG | + | chr8_3:8277730-8277749 | None:intergenic | 20.0% |
| !! | TTTACTAGTTCATAAAATTC+AGG | - | chr8_3:8278176-8278195 | Msa1274510:CDS | 20.0% |
| !! | TATATATTCTACTAATGTAG+AGG | - | chr8_3:8278729-8278748 | Msa1274510:five_prime_UTR | 20.0% |
| !! | ATATATTCTACTAATGTAGA+GGG | - | chr8_3:8278730-8278749 | Msa1274510:five_prime_UTR | 20.0% |
| !! | TCATTAATGAAGATTTAAGT+TGG | - | chr8_3:8278844-8278863 | Msa1274510:five_prime_UTR | 20.0% |
| !!! | GTTATAAAAACTGATTTGGA+CGG | + | chr8_3:8275127-8275146 | None:intergenic | 25.0% |
| ! | TAACAAACCAAAAACAGAAA+GGG | + | chr8_3:8275257-8275276 | None:intergenic | 25.0% |
| !! | TCTTTTTCTTTCCTCTTTTT+AGG | + | chr8_3:8275318-8275337 | None:intergenic | 25.0% |
| ! | GAACAAATTCAAAGGAAATA+AGG | + | chr8_3:8275407-8275426 | None:intergenic | 25.0% |
| ! | ACTTGTTTCAATCTAGAAAA+AGG | - | chr8_3:8275557-8275576 | Msa1274510:intron | 25.0% |
| ! | CAAAATAAAACATGATATCG+CGG | + | chr8_3:8275999-8276018 | None:intergenic | 25.0% |
| !! | CTATTTGTCTTCTTTTATGT+AGG | - | chr8_3:8276238-8276257 | Msa1274510:intron | 25.0% |
| ! | GACACAATTATTGCATTAAA+AGG | + | chr8_3:8276762-8276781 | None:intergenic | 25.0% |
| !! | TGGAAATGTTTTTCTTTGTT+GGG | - | chr8_3:8276844-8276863 | Msa1274510:intron | 25.0% |
| ! | TTTCAATCATAACTACTTCT+AGG | - | chr8_3:8277130-8277149 | Msa1274510:intron | 25.0% |
| ! | CTTGTTTATGAAGATAATGA+AGG | - | chr8_3:8277319-8277338 | Msa1274510:CDS | 25.0% |
| ! | CTATATATAACTCTTGCAAT+TGG | - | chr8_3:8277529-8277548 | Msa1274510:CDS | 25.0% |
| ! | AAAACTCACACAATAACATA+GGG | + | chr8_3:8277560-8277579 | None:intergenic | 25.0% |
| ! | TACAAATCATAGAGTGATTA+GGG | - | chr8_3:8277860-8277879 | Msa1274510:intron | 25.0% |
| ! | TTCATATACAATTTAGTCCT+TGG | + | chr8_3:8277936-8277955 | None:intergenic | 25.0% |
| ! | AAATATTGTGATGTATGAGT+TGG | + | chr8_3:8278263-8278282 | None:intergenic | 25.0% |
| ! | TTCTCAATTAAAGTTGAGTT+TGG | + | chr8_3:8278368-8278387 | None:intergenic | 25.0% |
| ! | CAAAATAAATCAGGATTAAG+AGG | + | chr8_3:8278405-8278424 | None:intergenic | 25.0% |
| !! | CTCTTAATCCTGATTTATTT+TGG | - | chr8_3:8278403-8278422 | Msa1274510:five_prime_UTR | 25.0% |
| !!! | AGTGTTTTTGTTTGACATTT+TGG | - | chr8_3:8278555-8278574 | Msa1274510:five_prime_UTR | 25.0% |
| ! | TTGCATTCATACACATTATT+AGG | + | chr8_3:8278626-8278645 | None:intergenic | 25.0% |
| ! | TTACATTCACACACAATATT+TGG | + | chr8_3:8278813-8278832 | None:intergenic | 25.0% |
| ! | CATTGATTAAAGTTACAGCT+TGG | - | chr8_3:8275146-8275165 | Msa1274510:three_prime_UTR | 30.0% |
| AAAAACAGAAAGGGAATTAG+TGG | + | chr8_3:8275248-8275267 | None:intergenic | 30.0% | |
| ! | ACTAATTCCCTTTCTGTTTT+TGG | - | chr8_3:8275247-8275266 | Msa1274510:three_prime_UTR | 30.0% |
| CTAACAAACCAAAAACAGAA+AGG | + | chr8_3:8275258-8275277 | None:intergenic | 30.0% | |
| !!! | CTTTCTGTTTTTGGTTTGTT+AGG | - | chr8_3:8275256-8275275 | Msa1274510:three_prime_UTR | 30.0% |
| AGTGAACAGAACAAATTCAA+AGG | + | chr8_3:8275415-8275434 | None:intergenic | 30.0% | |
| ! | CAAAGTTTTTCACTTCTTGA+TGG | - | chr8_3:8275444-8275463 | Msa1274510:intron | 30.0% |
| !! | GGTTTTTAAGCCTTAAAGAA+AGG | - | chr8_3:8275465-8275484 | Msa1274510:intron | 30.0% |
| ! | ATTTTGTAAGCAACAAGATG+TGG | - | chr8_3:8275601-8275620 | Msa1274510:intron | 30.0% |
| ATCAATGCAAGTGATGAAAA+AGG | - | chr8_3:8275797-8275816 | Msa1274510:intron | 30.0% | |
| GAAATTCAGCTTTACCAAAT+AGG | - | chr8_3:8275895-8275914 | Msa1274510:intron | 30.0% | |
| CTTATAAGAGAGAAAAGCAA+AGG | + | chr8_3:8275937-8275956 | None:intergenic | 30.0% | |
| CTTGTTTGTGAAGATCAATA+TGG | - | chr8_3:8276487-8276506 | Msa1274510:intron | 30.0% | |
| TTTGTGAAGATCAATATGGA+TGG | - | chr8_3:8276491-8276510 | Msa1274510:intron | 30.0% | |
| ! | ATGTCAATTTTTCTCCCAAT+AGG | + | chr8_3:8276521-8276540 | None:intergenic | 30.0% |
| ATTGACATCAATGCTTATGA+TGG | - | chr8_3:8276533-8276552 | Msa1274510:intron | 30.0% | |
| ATTATCAACGTTTACCTTCA+AGG | + | chr8_3:8276604-8276623 | None:intergenic | 30.0% | |
| !! | GTCTGATTTTAATCTATCGA+CGG | - | chr8_3:8276679-8276698 | Msa1274510:intron | 30.0% |
| AATTATTGCATTAAAAGGCC+AGG | + | chr8_3:8276757-8276776 | None:intergenic | 30.0% | |
| !! | TGACATAACTTTTTGTTGTG+TGG | - | chr8_3:8276824-8276843 | Msa1274510:intron | 30.0% |
| ! | GTGGAAATGTTTTTCTTTGT+TGG | - | chr8_3:8276843-8276862 | Msa1274510:intron | 30.0% |
| CAAAAGATGTAGGTAACAAA+AGG | + | chr8_3:8276904-8276923 | None:intergenic | 30.0% | |
| GCTATTTAGTCAAAAGATGT+AGG | + | chr8_3:8276914-8276933 | None:intergenic | 30.0% | |
| !!! | GTTTCAATTGCATTTTAGCT+AGG | + | chr8_3:8276972-8276991 | None:intergenic | 30.0% |
| GCAGAGATAAATTTATCTCA+TGG | - | chr8_3:8277226-8277245 | Msa1274510:intron | 30.0% | |
| CAAAACTCACACAATAACAT+AGG | + | chr8_3:8277561-8277580 | None:intergenic | 30.0% | |
| TAACTTAAAGCTAGCTAGTT+TGG | - | chr8_3:8277745-8277764 | Msa1274510:intron | 30.0% | |
| ! | GTACAAGTCTTCTAAAGAAA+AGG | - | chr8_3:8277784-8277803 | Msa1274510:intron | 30.0% |
| GTACAAATCATAGAGTGATT+AGG | - | chr8_3:8277859-8277878 | Msa1274510:intron | 30.0% | |
| ATGACTAGGTGATCATAATT+TGG | + | chr8_3:8277897-8277916 | None:intergenic | 30.0% | |
| ACCTAGTCATAAATTGTAAC+AGG | - | chr8_3:8277907-8277926 | Msa1274510:intron | 30.0% | |
| ACCTGTTACAATTTATGACT+AGG | + | chr8_3:8277911-8277930 | None:intergenic | 30.0% | |
| GACATGTTACAATTTCAATG+AGG | - | chr8_3:8278151-8278170 | Msa1274510:CDS | 30.0% | |
| !! | ATTGTGAGTATCGAATGAAA+TGG | + | chr8_3:8278203-8278222 | None:intergenic | 30.0% |
| GATCACAACCAAAATAAATC+AGG | + | chr8_3:8278414-8278433 | None:intergenic | 30.0% | |
| TAAATGTTCTTGTTCACAGT+TGG | - | chr8_3:8278444-8278463 | Msa1274510:five_prime_UTR | 30.0% | |
| !!! | TTGACATTTTGGTTCCTTTT+TGG | - | chr8_3:8278566-8278585 | Msa1274510:five_prime_UTR | 30.0% |
| !!! | TGACATTTTGGTTCCTTTTT+GGG | - | chr8_3:8278567-8278586 | Msa1274510:five_prime_UTR | 30.0% |
| TAATCTACTTTAGCCCAAAA+AGG | + | chr8_3:8278583-8278602 | None:intergenic | 30.0% | |
| !! | TTTTTGGGCTAAAGTAGATT+AGG | - | chr8_3:8278582-8278601 | Msa1274510:five_prime_UTR | 30.0% |
| ! | TTTTGGGCTAAAGTAGATTA+GGG | - | chr8_3:8278583-8278602 | Msa1274510:five_prime_UTR | 30.0% |
| ATGATATTTGATGCATCACT+AGG | - | chr8_3:8278769-8278788 | Msa1274510:five_prime_UTR | 30.0% | |
| TGATATTTGATGCATCACTA+GGG | - | chr8_3:8278770-8278789 | Msa1274510:five_prime_UTR | 30.0% | |
| CGCAACTTGAAACAAATGTT+AGG | + | chr8_3:8275217-8275236 | None:intergenic | 35.0% | |
| !!! | GTTTTTGGTTTGTTAGGCTA+AGG | - | chr8_3:8275262-8275281 | Msa1274510:three_prime_UTR | 35.0% |
| TCAAACCTATGCCTAAAAAG+AGG | - | chr8_3:8275304-8275323 | Msa1274510:three_prime_UTR | 35.0% | |
| !! | TCTTTCCTCTTTTTAGGCAT+AGG | + | chr8_3:8275312-8275331 | None:intergenic | 35.0% |
| ! | TTTGGTTTCACACGCTTAAA+TGG | + | chr8_3:8275342-8275361 | None:intergenic | 35.0% |
| ATGGAATAGTTGCCTAACTT+TGG | + | chr8_3:8275360-8275379 | None:intergenic | 35.0% | |
| CTATTCCATGCTATATTCTG+TGG | - | chr8_3:8275371-8275390 | Msa1274510:three_prime_UTR | 35.0% | |
| !! | TTATAGGTTCTTTTGGGAGT+TGG | - | chr8_3:8275498-8275517 | Msa1274510:intron | 35.0% |
| TACCAAATAGGTCTCAGAAA+AGG | - | chr8_3:8275907-8275926 | Msa1274510:intron | 35.0% | |
| !!! | TACCTTTTCTGAGACCTATT+TGG | + | chr8_3:8275912-8275931 | None:intergenic | 35.0% |
| GGTATCTGTGAATTCAATTG+TGG | + | chr8_3:8276170-8276189 | None:intergenic | 35.0% | |
| CATATCTGCAACCACAATTA+CGG | + | chr8_3:8276210-8276229 | None:intergenic | 35.0% | |
| ! | GTGGTTGCAGATATGAATTT+TGG | - | chr8_3:8276215-8276234 | Msa1274510:CDS | 35.0% |
| !!! | AGCAGCATTTCTGTTTTAGT+TGG | + | chr8_3:8276318-8276337 | None:intergenic | 35.0% |
| TTCTTCCTGAATGAACGAAT+CGG | + | chr8_3:8276362-8276381 | None:intergenic | 35.0% | |
| ATAACCTTGTCTTGAACCAT+AGG | + | chr8_3:8276428-8276447 | None:intergenic | 35.0% | |
| AACAAACCTATTAGCAACTC+TGG | - | chr8_3:8276458-8276477 | Msa1274510:intron | 35.0% | |
| AATATGGATGGAGTTCCTAT+TGG | - | chr8_3:8276503-8276522 | Msa1274510:intron | 35.0% | |
| ATATGGATGGAGTTCCTATT+GGG | - | chr8_3:8276504-8276523 | Msa1274510:intron | 35.0% | |
| ATCTAACTCAATGTCTACCA+TGG | - | chr8_3:8276706-8276725 | Msa1274510:intron | 35.0% | |
| TGACTGTAGTAAAAATGCCA+TGG | + | chr8_3:8276726-8276745 | None:intergenic | 35.0% | |
| CAAGTAACATTCAAAACTCC+TGG | - | chr8_3:8276933-8276952 | Msa1274510:intron | 35.0% | |
| !! | CTAGGTTGACATTTTATACC+AGG | + | chr8_3:8276954-8276973 | None:intergenic | 35.0% |
| ATGATTGATTGACAGTGCAA+CGG | + | chr8_3:8277075-8277094 | None:intergenic | 35.0% | |
| CAATCATAACTACTTCTAGG+TGG | - | chr8_3:8277133-8277152 | Msa1274510:intron | 35.0% | |
| TGGAATTAACAAGAAGCAAG+AGG | - | chr8_3:8277246-8277265 | Msa1274510:intron | 35.0% | |
| AAGCAAGAGGAAGAAGATAA+AGG | - | chr8_3:8277259-8277278 | Msa1274510:intron | 35.0% | |
| !! | GAAGAAGATAAAGGCATCAA+AGG | - | chr8_3:8277268-8277287 | Msa1274510:intron | 35.0% |
| TGATAAGATACTTACTGCCA+CGG | + | chr8_3:8277370-8277389 | None:intergenic | 35.0% | |
| !! | GAAGCTATGATTTGTTACTG+TGG | - | chr8_3:8277614-8277633 | Msa1274510:intron | 35.0% |
| TAAAACTCACGGTTAAAAGC+AGG | + | chr8_3:8277719-8277738 | None:intergenic | 35.0% | |
| TAAATTGTAACAGGTCACCA+AGG | - | chr8_3:8277916-8277935 | Msa1274510:intron | 35.0% | |
| ! | CTGATAATTTGTGTCGTTAG+AGG | + | chr8_3:8278115-8278134 | None:intergenic | 35.0% |
| AAGCGTGTGAAACCAAAGTT+AGG | - | chr8_3:8275345-8275364 | Msa1274510:three_prime_UTR | 40.0% | |
| ATGAGCCACAGAATATAGCA+TGG | + | chr8_3:8275379-8275398 | None:intergenic | 40.0% | |
| AAGCCACAAGTGTTCTTTAG+AGG | - | chr8_3:8275629-8275648 | Msa1274510:intron | 40.0% | |
| ! | TCTCCTCTAAAGAACACTTG+TGG | + | chr8_3:8275635-8275654 | None:intergenic | 40.0% |
| ! | ACAAGTGTTCTTTAGAGGAG+AGG | - | chr8_3:8275634-8275653 | Msa1274510:intron | 40.0% |
| ! | TTCTTTAGAGGAGAGGAAGT+TGG | - | chr8_3:8275641-8275660 | Msa1274510:intron | 40.0% |
| TTGACAAACTCTTCTTCACC+AGG | + | chr8_3:8275684-8275703 | None:intergenic | 40.0% | |
| GAAGAATCATCACTCACTCT+TGG | - | chr8_3:8275741-8275760 | Msa1274510:intron | 40.0% | |
| TCTTGCAAGTTTGTGCAACA+AGG | + | chr8_3:8275840-8275859 | None:intergenic | 40.0% | |
| TGTTGCACAAACTTGCAAGA+TGG | - | chr8_3:8275840-8275859 | Msa1274510:intron | 40.0% | |
| GCTGAATTTCTTGCAGAAGA+AGG | + | chr8_3:8275885-8275904 | None:intergenic | 40.0% | |
| CTCAATTGCAGCTACAATTG+TGG | + | chr8_3:8276033-8276052 | None:intergenic | 40.0% | |
| GATACCAAAACCTAACGTTG+TGG | - | chr8_3:8276184-8276203 | Msa1274510:CDS | 40.0% | |
| TTCAGGAAGAACATTGCAAG+TGG | - | chr8_3:8276371-8276390 | Msa1274510:intron | 40.0% | |
| CCTTTACCAGAGTTGCTAAT+AGG | + | chr8_3:8276467-8276486 | None:intergenic | 40.0% | |
| CCTATTAGCAACTCTGGTAA+AGG | - | chr8_3:8276464-8276483 | Msa1274510:intron | 40.0% | |
| !! | GCTGTTGATGACCTATTTAG+AGG | - | chr8_3:8276575-8276594 | Msa1274510:CDS | 40.0% |
| CTTCAAGGAGACCTCTAAAT+AGG | + | chr8_3:8276589-8276608 | None:intergenic | 40.0% | |
| CTATTTAGAGGTCTCCTTGA+AGG | - | chr8_3:8276587-8276606 | Msa1274510:CDS | 40.0% | |
| ! | AAAGGATCATTGACTGGAAG+TGG | - | chr8_3:8277286-8277305 | Msa1274510:intron | 40.0% |
| AAGGAGACAAGATGCTTGTA+GGG | - | chr8_3:8277338-8277357 | Msa1274510:CDS | 40.0% | |
| TGTTTGTATCCACAGTGAAG+AGG | - | chr8_3:8277666-8277685 | Msa1274510:intron | 40.0% | |
| GGTAGCAAGAAAGACTAGAT+TGG | - | chr8_3:8278465-8278484 | Msa1274510:five_prime_UTR | 40.0% | |
| GTACATTAGACCACTTGACT+CGG | - | chr8_3:8278487-8278506 | Msa1274510:five_prime_UTR | 40.0% | |
| GTCAAACAAAAACACTCGTG+TGG | + | chr8_3:8278551-8278570 | None:intergenic | 40.0% | |
| ATGTTCTTGAGCTCAAGACT+TGG | - | chr8_3:8278675-8278694 | Msa1274510:intron | 40.0% | |
| TACAGCTTGGTCAACGATTC+AGG | - | chr8_3:8275159-8275178 | Msa1274510:three_prime_UTR | 45.0% | |
| ! | CTTGGTCAACGATTCAGGTT+AGG | - | chr8_3:8275164-8275183 | Msa1274510:three_prime_UTR | 45.0% |
| AGGAAGTTGGAGCTTAGACT+TGG | - | chr8_3:8275654-8275673 | Msa1274510:intron | 45.0% | |
| ACAAACTCTTCTTCACCAGG+TGG | + | chr8_3:8275681-8275700 | None:intergenic | 45.0% | |
| ACAATTACGGCCACAACGTT+AGG | + | chr8_3:8276197-8276216 | None:intergenic | 45.0% | |
| TAACGTTGTGGCCGTAATTG+TGG | - | chr8_3:8276196-8276215 | Msa1274510:CDS | 45.0% | |
| AATGCTGCTAGTCCAGTAGT+AGG | - | chr8_3:8276329-8276348 | Msa1274510:intron | 45.0% | |
| TTCCTGAATGAACGAATCGG+AGG | + | chr8_3:8276359-8276378 | None:intergenic | 45.0% | |
| ACTACAGTCAATCCAGATCC+TGG | - | chr8_3:8276736-8276755 | Msa1274510:intron | 45.0% | |
| TGCATTAAAAGGCCAGGATC+TGG | + | chr8_3:8276751-8276770 | None:intergenic | 45.0% | |
| GGCATCAAAGGATCATTGAC+TGG | - | chr8_3:8277280-8277299 | Msa1274510:intron | 45.0% | |
| GAAGGAGACAAGATGCTTGT+AGG | - | chr8_3:8277337-8277356 | Msa1274510:CDS | 45.0% | |
| AGGAGACAAGATGCTTGTAG+GGG | - | chr8_3:8277339-8277358 | Msa1274510:CDS | 45.0% | |
| AGCAGGAAGATCAGAACTCT+TGG | + | chr8_3:8277702-8277721 | None:intergenic | 45.0% | |
| CTTGAGCTCAAGACTTGGAT+TGG | - | chr8_3:8278680-8278699 | Msa1274510:intron | 45.0% | |
| ! | AAGACTTGGATTGGATGCTG+AGG | - | chr8_3:8278689-8278708 | Msa1274510:intron | 45.0% |
| TATCCGTGTGCTGAAAGCTT+TGG | - | chr8_3:8278889-8278908 | Msa1274510:five_prime_UTR | 45.0% | |
| ! | ACGGCCACAACGTTAGGTTT+TGG | + | chr8_3:8276191-8276210 | None:intergenic | 50.0% |
| CTGCTAGTCCAGTAGTAGGT+TGG | - | chr8_3:8276333-8276352 | Msa1274510:intron | 50.0% | |
| CTTGTCTTGAACCATAGGCC+GGG | + | chr8_3:8276423-8276442 | None:intergenic | 50.0% | |
| CCTTGTCTTGAACCATAGGC+CGG | + | chr8_3:8276424-8276443 | None:intergenic | 50.0% | |
| CTTTGCATTGCCGAGTCAAG+TGG | + | chr8_3:8278500-8278519 | None:intergenic | 50.0% | |
| !! | CACTTGACTCGGCAATGCAA+AGG | - | chr8_3:8278498-8278517 | Msa1274510:five_prime_UTR | 50.0% |
| ! | TGACTCGGCAATGCAAAGGA+AGG | - | chr8_3:8278502-8278521 | Msa1274510:five_prime_UTR | 50.0% |
| GGCAATGCAAAGGAAGGATG+AGG | - | chr8_3:8278508-8278527 | Msa1274510:five_prime_UTR | 50.0% | |
| AGGAAGGATGAGGCTGTTTG+AGG | - | chr8_3:8278518-8278537 | Msa1274510:five_prime_UTR | 50.0% | |
| ! | GAGCTTAGACTTGGTCCACC+TGG | - | chr8_3:8275663-8275682 | Msa1274510:intron | 55.0% |
| ATCGGAGGCCAACCTACTAC+TGG | + | chr8_3:8276344-8276363 | None:intergenic | 55.0% | |
| ! | GGCCTCCGATTCGTTCATTC+AGG | - | chr8_3:8276354-8276373 | Msa1274510:intron | 55.0% |
| CTAAGCAGCCTACTGAGTCC+CGG | - | chr8_3:8276402-8276421 | Msa1274510:intron | 55.0% | |
| CCGGCCTATGGTTCAAGACA+AGG | - | chr8_3:8276421-8276440 | Msa1274510:intron | 55.0% | |
| ACCATAGGCCGGGACTCAGT+AGG | + | chr8_3:8276413-8276432 | None:intergenic | 60.0% | |
| CACACGCAGCCTCTTCACTG+TGG | + | chr8_3:8277678-8277697 | None:intergenic | 60.0% | |
| GCCTACTGAGTCCCGGCCTA+TGG | - | chr8_3:8276409-8276428 | Msa1274510:intron | 65.0% | |
| TGCTTGTAGGGGACGTGCCG+TGG | - | chr8_3:8277350-8277369 | Msa1274510:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 8274997 | 8278912 | 8274997 | ID=Msa1274510;Name=Msa1274510 |
| chr8_3 | mRNA | 8274997 | 8278912 | 8274997 | ID=Msa1274510-mRNA-1;Parent=Msa1274510;Name=Msa1274510-mRNA-1;_AED=0.02;_eAED=0.02;_QI=524|1|1|1|0.6|0.33|6|430|273 |
| chr8_3 | exon | 8274997 | 8275446 | 8274997 | ID=Msa1274510-mRNA-1:exon:3332;Parent=Msa1274510-mRNA-1 |
| chr8_3 | exon | 8276181 | 8276245 | 8276181 | ID=Msa1274510-mRNA-1:exon:3331;Parent=Msa1274510-mRNA-1 |
| chr8_3 | exon | 8276535 | 8276679 | 8276535 | ID=Msa1274510-mRNA-1:exon:3330;Parent=Msa1274510-mRNA-1 |
| chr8_3 | exon | 8277301 | 8277581 | 8277301 | ID=Msa1274510-mRNA-1:exon:3329;Parent=Msa1274510-mRNA-1 |
| chr8_3 | exon | 8277981 | 8278631 | 8277981 | ID=Msa1274510-mRNA-1:exon:3328;Parent=Msa1274510-mRNA-1 |
| chr8_3 | exon | 8278729 | 8278912 | 8278729 | ID=Msa1274510-mRNA-1:exon:3327;Parent=Msa1274510-mRNA-1 |
| chr8_3 | five_prime_UTR | 8278729 | 8278912 | 8278729 | ID=Msa1274510-mRNA-1:five_prime_utr;Parent=Msa1274510-mRNA-1 |
| chr8_3 | five_prime_UTR | 8278292 | 8278631 | 8278292 | ID=Msa1274510-mRNA-1:five_prime_utr;Parent=Msa1274510-mRNA-1 |
| chr8_3 | CDS | 8277981 | 8278291 | 8277981 | ID=Msa1274510-mRNA-1:cds;Parent=Msa1274510-mRNA-1 |
| chr8_3 | CDS | 8277301 | 8277581 | 8277301 | ID=Msa1274510-mRNA-1:cds;Parent=Msa1274510-mRNA-1 |
| chr8_3 | CDS | 8276535 | 8276679 | 8276535 | ID=Msa1274510-mRNA-1:cds;Parent=Msa1274510-mRNA-1 |
| chr8_3 | CDS | 8276181 | 8276245 | 8276181 | ID=Msa1274510-mRNA-1:cds;Parent=Msa1274510-mRNA-1 |
| chr8_3 | CDS | 8275427 | 8275446 | 8275427 | ID=Msa1274510-mRNA-1:cds;Parent=Msa1274510-mRNA-1 |
| chr8_3 | three_prime_UTR | 8274997 | 8275426 | 8274997 | ID=Msa1274510-mRNA-1:three_prime_utr;Parent=Msa1274510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
