AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0213430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0213430 MtrunA17_Chr2g0313621 95.641 757 33 0 1 757 2 758 0.0 1446
Msa0213430 MtrunA17_Chr1g0156811 26.190 294 187 11 71 358 67 336 6.00e-18 87.8
Msa0213430 MtrunA17_Chr1g0199571 25.000 292 190 10 71 356 67 335 6.79e-16 81.6
Msa0213430 MtrunA17_Chr6g0484401 33.913 115 71 2 285 398 614 724 7.75e-16 82.0
Msa0213430 MtrunA17_Chr2g0290721 46.341 82 41 2 288 368 5 84 7.08e-14 75.9
Msa0213430 MtrunA17_Chr4g0037111 25.000 276 172 10 71 337 67 316 1.16e-13 73.2
Msa0213430 MtrunA17_Chr4g0064531 22.910 323 228 9 68 387 64 368 1.31e-13 74.3
Msa0213430 MtrunA17_Chr8g0351231 26.421 299 191 11 73 364 68 344 3.35e-13 72.8
Msa0213430 MtrunA17_Chr8g0391121 30.435 115 75 2 284 397 613 723 7.57e-13 72.4
Msa0213430 MtrunA17_Chr4g0037821 22.955 379 239 13 69 413 200 559 9.07e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0213430 AT1G53590.1 66.352 636 193 9 5 635 2 621 0.0 862
Msa0213430 AT3G14590.2 67.438 648 192 10 23 661 20 657 0.0 861
Msa0213430 AT3G14590.3 67.727 629 184 10 42 661 8 626 0.0 834
Msa0213430 AT3G14590.1 67.633 621 182 10 50 661 2 612 0.0 820
Msa0213430 AT3G14590.5 65.921 581 179 10 90 661 1 571 0.0 741
Msa0213430 AT3G14590.4 64.865 555 176 10 116 661 25 569 0.0 689
Msa0213430 AT1G05500.1 24.074 324 223 10 68 387 64 368 6.59e-17 85.1
Msa0213430 AT5G04220.3 22.393 326 212 11 71 391 5 294 1.78e-14 77.0
Msa0213430 AT1G03370.2 39.450 109 60 3 287 391 4 110 4.81e-14 76.6
Msa0213430 AT1G03370.1 39.450 109 60 3 287 391 4 110 5.46e-14 76.6
Msa0213430 AT1G20080.2 23.247 271 179 9 71 335 67 314 6.57e-14 75.5
Msa0213430 AT1G20080.3 23.247 271 179 9 71 335 67 314 6.57e-14 75.5
Msa0213430 AT1G20080.4 23.247 271 179 9 71 335 67 314 6.57e-14 75.5
Msa0213430 AT1G20080.1 23.247 271 179 9 71 335 67 314 6.57e-14 75.5
Msa0213430 AT1G20080.5 23.247 271 179 9 71 335 67 314 6.57e-14 75.5
Msa0213430 AT5G04220.2 23.024 291 197 9 71 356 67 335 6.91e-14 75.5
Msa0213430 AT3G18370.1 34.545 110 67 2 290 398 611 716 5.28e-13 73.2
Msa0213430 AT3G61050.2 23.794 311 207 11 73 376 68 355 1.33e-11 68.2
Msa0213430 AT3G61050.1 23.794 311 207 11 73 376 68 355 1.33e-11 68.2

Find 200 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATTCCTCTTGCCATTT+TGG 0.089795 2_1:+56363327 None:intergenic
TTCTGTTCAGCACCTATATT+TGG 0.118354 2_1:-56364823 Msa0213430:CDS
ACTTTAGTTCTTGCATCTTT+TGG 0.183440 2_1:+56360119 None:intergenic
ATCTGGAAAATCTCCAAAAT+TGG 0.203589 2_1:-56360801 Msa0213430:CDS
ATATGTATAATTTGAGAAAA+TGG 0.213431 2_1:-56359759 Msa0213430:three_prime_UTR
TCATAGTTATCTGCCAATTT+TGG 0.215229 2_1:+56360788 None:intergenic
AATGGATTGAGTTGAATAAT+TGG 0.229459 2_1:+56366740 None:intergenic
AAGAAATGGTGGCAGATAAA+AGG 0.236308 2_1:-56359890 Msa0213430:CDS
TTATATGTTATGTTATATTT+TGG 0.237466 2_1:-56359614 Msa0213430:three_prime_UTR
CACCTTTGATTACTGATATC+AGG 0.238503 2_1:-56364791 Msa0213430:CDS
GGTGATAAAGTGTTGCAATT+AGG 0.239091 2_1:+56366706 None:intergenic
GGCTTTGATCTATCTTTATC+TGG 0.247822 2_1:-56366266 Msa0213430:intron
AACCACATTCACATCGGATT+TGG 0.255125 2_1:+56360019 None:intergenic
ATTTGGGGAACTTCGCTTCC+TGG 0.256187 2_1:+56360716 None:intergenic
TCTCTCTTTGCCGGGCTATC+AGG 0.263166 2_1:+56360314 None:intergenic
AACCTCATTAACATCGGATT+TGG 0.269470 2_1:+56360058 None:intergenic
TCCTTGACGTCTCTCTTTGC+CGG 0.274210 2_1:+56360305 None:intergenic
GTGATAAAGTGTTGCAATTA+GGG 0.282411 2_1:+56366707 None:intergenic
ATTTCGTAGGAGTCGGAAAA+TGG 0.284800 2_1:-56360504 Msa0213430:CDS
AGAAAACACTTTCTCCAAAA+TGG 0.300673 2_1:-56363341 Msa0213430:CDS
ACCACATTCACATCGGATTT+GGG 0.307145 2_1:+56360020 None:intergenic
GGCTGTAATTCAACTGTATC+TGG 0.309334 2_1:-56360623 Msa0213430:CDS
AACATCAACAACCAGCATAT+TGG 0.311236 2_1:+56363828 None:intergenic
TTGACAGTCATCTGAAAATA+TGG 0.314441 2_1:+56364248 None:intergenic
ACCTCATTAACATCGGATTT+GGG 0.316761 2_1:+56360059 None:intergenic
TCCTTATGTGAAAGGTCATT+TGG 0.327934 2_1:-56363394 Msa0213430:CDS
CTTCAATGTCTATTGTCTCT+TGG 0.331491 2_1:+56360882 None:intergenic
CTTTCCGACTGGTAAGATTC+AGG 0.339765 2_1:-56360366 Msa0213430:CDS
TCCTTCTCATCCGTTTCATC+TGG 0.345735 2_1:-56360818 Msa0213430:CDS
CATCTCCACGTGATAACATT+AGG 0.350904 2_1:-56360448 Msa0213430:CDS
CGGAAAATGGACGATAATTC+AGG 0.353749 2_1:-56360491 Msa0213430:CDS
AAGTGGAAATGGTTTGGATA+TGG 0.360654 2_1:+56366619 None:intergenic
TCTAAGAACCATGGTATGAT+AGG 0.363312 2_1:+56365094 None:intergenic
AAGATTAATTGAAGTGGAAA+TGG 0.364928 2_1:+56366608 None:intergenic
ACATCAACAACCAGCATATT+GGG 0.372605 2_1:+56363829 None:intergenic
TCAATGCAGGTTCTTGAGTT+AGG 0.375126 2_1:-56364655 Msa0213430:intron
ATGAAGCCATCAGATCTAAA+TGG 0.379168 2_1:-56363511 Msa0213430:intron
GGTCAGTAAATGCTTCTAAA+GGG 0.385901 2_1:-56360427 Msa0213430:CDS
ACAAGCCAGCCAGCAATTCC+TGG 0.385953 2_1:+56364188 None:intergenic
GATGGAAAGTCCTGCGCAAT+AGG 0.388349 2_1:+56360467 None:intergenic
CATTTCTATGATGACATCCT+TGG 0.399030 2_1:-56363243 Msa0213430:CDS
TATACATATGTTTATATGTC+GGG 0.400062 2_1:+56359773 None:intergenic
GGTTGGCGTGAAGTTTGTTA+TGG 0.403419 2_1:-56360405 Msa0213430:CDS
TAATTGAAGTGGAAATGGTT+TGG 0.403668 2_1:+56366613 None:intergenic
GTTACAATCCCATGTTATGA+TGG 0.407165 2_1:+56363299 None:intergenic
ATGGATTGAGTTGAATAATT+GGG 0.415021 2_1:+56366741 None:intergenic
AATAACAGTTCTTGATGATA+AGG 0.416703 2_1:-56362631 Msa0213430:CDS
AAACATATGGCCTATATGTA+TGG 0.422201 2_1:-56365146 Msa0213430:CDS
AGAAATGGTGGCAGATAAAA+GGG 0.422355 2_1:-56359889 Msa0213430:CDS
AATTAGGGTTTACAAGGAAA+TGG 0.424845 2_1:+56366722 None:intergenic
CAAATATCTTTACCTTGGTC+TGG 0.430139 2_1:+56363790 None:intergenic
ACAGAACTTCCAGGAATTGC+TGG 0.430424 2_1:-56364197 Msa0213430:CDS
CAAGGATGTCATCATAGAAA+TGG 0.432627 2_1:+56363244 None:intergenic
GTGGGTTTCTTCCCAAATAT+AGG 0.432753 2_1:+56364811 None:intergenic
ATCTTATTGTTATAGAGCCT+TGG 0.437260 2_1:-56363597 Msa0213430:intron
CCTTATGTGAAAGGTCATTT+GGG 0.442994 2_1:-56363393 Msa0213430:CDS
GCAATCTGTTCCATACATAT+AGG 0.443303 2_1:+56365136 None:intergenic
TCTGTTCAGCACCTATATTT+GGG 0.444459 2_1:-56364822 Msa0213430:CDS
CTTGATGTGACAGAACTTCC+AGG 0.446186 2_1:-56364206 Msa0213430:CDS
AGGAAAGGCCTGCACAAAAT+CGG 0.446259 2_1:-56360533 Msa0213430:CDS
TCCAAACACCTGTCTTCTCT+TGG 0.447465 2_1:+56360747 None:intergenic
GCCAAGAGAAGACAGGTGTT+TGG 0.448255 2_1:-56360748 Msa0213430:CDS
CCTTGACGTCTCTCTTTGCC+GGG 0.450193 2_1:+56360306 None:intergenic
ACTGCTGCTGTCATTGTTCA+AGG 0.451580 2_1:+56360598 None:intergenic
ATTTGGGAGGATATAGATTC+AGG 0.451759 2_1:-56363377 Msa0213430:CDS
CGAACATGATAAAGAAGAAA+TGG 0.452429 2_1:-56359904 Msa0213430:CDS
AAATTTGAAATATGAATTGT+CGG 0.454393 2_1:-56359686 Msa0213430:three_prime_UTR
GTCAACAAAGCTGCATATAA+CGG 0.454586 2_1:-56364557 Msa0213430:CDS
CCCAAATGACCTTTCACATA+AGG 0.456580 2_1:+56363393 None:intergenic
ATGGGATTGTAACAATGTTC+TGG 0.457201 2_1:-56363289 Msa0213430:CDS
TCAACAAAGCTGCATATAAC+GGG 0.457469 2_1:-56364556 Msa0213430:CDS
ATTTCTATGATGACATCCTT+GGG 0.460075 2_1:-56363242 Msa0213430:intron
GGATGAGAAGGAACCTTTGT+TGG 0.462679 2_1:+56360829 None:intergenic
TGTTGCAATTAGGGTTTACA+AGG 0.465598 2_1:+56366716 None:intergenic
ATGTTCTTTCTCGTAAATCA+AGG 0.468368 2_1:-56360229 Msa0213430:CDS
GAGTGAAACGGTGACGTAAA+GGG 0.469866 2_1:+56366766 None:intergenic
ACCATGCAGTTGAAAACATA+TGG 0.471248 2_1:-56365159 Msa0213430:CDS
AGGTCAGTAAATGCTTCTAA+AGG 0.471451 2_1:-56360428 Msa0213430:CDS
TGACGTAAAGGGGAAGTAAC+GGG 0.473484 2_1:+56366777 None:intergenic
AACACTGCTGGCTTTCCGAC+TGG 0.476491 2_1:-56360377 Msa0213430:CDS
CTTGTTGACCACAGTGGTGT+TGG 0.476585 2_1:+56359983 None:intergenic
GAAAACAATCTAATCAAAGA+AGG 0.477365 2_1:-56365708 Msa0213430:CDS
AACATCGAATGAAAACTGTT+AGG 0.484264 2_1:-56360553 Msa0213430:CDS
GTTTCAATCTTGCATCATGC+TGG 0.486325 2_1:-56366355 Msa0213430:CDS
ACATGCATCAACGTCGGTAT+CGG 0.486409 2_1:-56359718 Msa0213430:three_prime_UTR
AACTTCCAGGAATTGCTGGC+TGG 0.486710 2_1:-56364193 Msa0213430:CDS
ACTGGTAAGATTCAGGTAGA+AGG 0.487108 2_1:-56360359 Msa0213430:CDS
ACAACACCAACAGCACTTAG+TGG 0.487584 2_1:+56359515 None:intergenic
TTACAGCCACATATATCGTT+AGG 0.490040 2_1:+56360638 None:intergenic
GAATAGTAAAATATTGAAAG+TGG 0.490720 2_1:+56366673 None:intergenic
TTATCTTCAGCATTATCATC+GGG 0.493511 2_1:+56360575 None:intergenic
TTTCTGATTCTGAAACAGTT+CGG 0.494262 2_1:-56365189 Msa0213430:CDS
TGGAAATGGTTTGGATATGG+TGG 0.495869 2_1:+56366622 None:intergenic
AAATTTGCAGCCCAATATGC+TGG 0.498130 2_1:-56363839 Msa0213430:intron
CCCTCTGAATTTCTGTGTCG+AGG 0.498634 2_1:+56360663 None:intergenic
CCCCAAATCCGATGTTAATG+AGG 0.499459 2_1:-56360060 Msa0213430:CDS
TAGTAACCATTTAGATCTGA+TGG 0.506393 2_1:+56363505 None:intergenic
TAAAATATTGAAAGTGGAGA+AGG 0.506941 2_1:+56366679 None:intergenic
AGAGTGAAACGGTGACGTAA+AGG 0.507888 2_1:+56366765 None:intergenic
AGGGAGTGGTCCTGATAGCC+CGG 0.515922 2_1:-56360324 Msa0213430:CDS
CGTAAATCAAGGAAATCAAA+AGG 0.517549 2_1:-56360218 Msa0213430:CDS
TTTATCTTCAGCATTATCAT+CGG 0.518677 2_1:+56360574 None:intergenic
AACGTTATGTTACAAGGCTA+AGG 0.518852 2_1:-56365753 Msa0213430:CDS
CAAATGTGGGAGCCAAGAAA+AGG 0.519554 2_1:-56360698 Msa0213430:CDS
ATAACGGGAATGCATGTTGA+AGG 0.519584 2_1:-56364541 Msa0213430:CDS
ACTACTCATTAAATTTCACT+TGG 0.519821 2_1:-56366415 Msa0213430:five_prime_UTR
AGTTCTTGATGATAAGGAAA+AGG 0.524058 2_1:-56362625 Msa0213430:intron
AAGTCAAAGATTAATTGAAG+TGG 0.526357 2_1:+56366602 None:intergenic
AAGAACTAAAGTTGTTTCAC+AGG 0.527604 2_1:-56360108 Msa0213430:CDS
ACCTTTGATTACTGATATCA+GGG 0.529556 2_1:-56364790 Msa0213430:CDS
TCCAGATGAAACGGATGAGA+AGG 0.532280 2_1:+56360817 None:intergenic
TTTCTTGGCTCCCACATTTG+GGG 0.533313 2_1:+56360701 None:intergenic
GGTCAACAAGGAGCCTCAAA+AGG 0.533735 2_1:-56359970 Msa0213430:CDS
CTAAGAACCATGGTATGATA+GGG 0.535211 2_1:+56365095 None:intergenic
TTCATGAACGTTATGTTACA+AGG 0.536010 2_1:-56365759 Msa0213430:CDS
TTACAATCCCATGTTATGAT+GGG 0.539219 2_1:+56363300 None:intergenic
TTGACCACAGTGGTGTTGGA+TGG 0.548005 2_1:+56359987 None:intergenic
GTTATGGATGATAACACTGC+TGG 0.548074 2_1:-56360389 Msa0213430:CDS
GCCATTGCTCAAGGTAACAT+TGG 0.548679 2_1:-56360086 Msa0213430:CDS
TTATACATATGTTTATATGT+CGG 0.548793 2_1:+56359772 None:intergenic
CTCATTAACATCGGATTTGG+GGG 0.549929 2_1:+56360061 None:intergenic
TCTTAGAGAAGTACAAACCT+TGG 0.551181 2_1:-56365078 Msa0213430:CDS
TGAGAAGGAACCTTTGTTGG+TGG 0.551198 2_1:+56360832 None:intergenic
ACACGTATACGACCAAGAAA+AGG 0.551448 2_1:+56364287 None:intergenic
GTTTCACAGGCCATTGCTCA+AGG 0.552763 2_1:-56360095 Msa0213430:CDS
CTAATGTTATCACGTGGAGA+TGG 0.553752 2_1:+56360449 None:intergenic
GAAGCGAAGTTCCCCAAATG+TGG 0.562195 2_1:-56360712 Msa0213430:CDS
CCTCATTAACATCGGATTTG+GGG 0.563282 2_1:+56360060 None:intergenic
AAGGGTCTGTTCAAAAGCAA+TGG 0.563438 2_1:+56364007 None:intergenic
CTGATTCTGAAACAGTTCGG+TGG 0.563534 2_1:-56365186 Msa0213430:CDS
GTAAATGCTTCTAAAGGGGT+TGG 0.564255 2_1:-56360422 Msa0213430:CDS
AAAAGGCATTCTCCCCTGAA+AGG 0.566489 2_1:-56359953 Msa0213430:CDS
TAATTCAGGTCCTATTGCGC+AGG 0.567039 2_1:-56360477 Msa0213430:CDS
CCACATTCACATCGGATTTG+GGG 0.569763 2_1:+56360021 None:intergenic
AAATCGGTTCTGTATTTCGT+AGG 0.570323 2_1:-56360517 Msa0213430:CDS
CTGATATCAGTAATCAAAGG+TGG 0.571778 2_1:+56364792 None:intergenic
CACATTCACATCGGATTTGG+GGG 0.573608 2_1:+56360022 None:intergenic
GGTGGATCAACGGAAGGGAG+TGG 0.574578 2_1:-56360338 Msa0213430:CDS
TCAGAATTCCCATCATAACA+TGG 0.575057 2_1:-56363308 Msa0213430:CDS
CCCCAAATCCGATGTGAATG+TGG 0.579254 2_1:-56360021 Msa0213430:CDS
GTTCTGTATTTCGTAGGAGT+CGG 0.580650 2_1:-56360511 Msa0213430:CDS
CAGAATTCCCATCATAACAT+GGG 0.581021 2_1:-56363307 Msa0213430:CDS
AGTGAAACGGTGACGTAAAG+GGG 0.582421 2_1:+56366767 None:intergenic
GCAAATGAGACCACCAACAA+AGG 0.582885 2_1:-56360842 Msa0213430:CDS
GGTTATTGAAGTTCGTGACA+AGG 0.583121 2_1:-56363268 Msa0213430:CDS
ACCAATGTTACCTTGAGCAA+TGG 0.583614 2_1:+56360085 None:intergenic
AAAGAGAGACGTCAAGGACA+TGG 0.585649 2_1:-56360300 Msa0213430:CDS
TTGGTTTAACGTGGACGAGA+AGG 0.586056 2_1:-56363578 Msa0213430:CDS
GTCAGTAAATGCTTCTAAAG+GGG 0.587217 2_1:-56360426 Msa0213430:CDS
AGACTTCACTCACCTCAACA+AGG 0.587867 2_1:+56363988 None:intergenic
ATTGAAGGCCAAGAGAAGAC+AGG 0.595022 2_1:-56360755 Msa0213430:CDS
GGGAATGCATGTTGAAGGGA+AGG 0.595088 2_1:-56364536 Msa0213430:intron
CTACTCATTAAATTTCACTT+GGG 0.595150 2_1:-56366414 Msa0213430:five_prime_UTR
GGGTGAAGTTCCTCAAGGAA+TGG 0.596250 2_1:-56364310 Msa0213430:CDS
AAAACAATCTAATCAAAGAA+GGG 0.596262 2_1:-56365707 Msa0213430:intron
GTAGAAGGTGGATCAACGGA+AGG 0.599566 2_1:-56360344 Msa0213430:CDS
CAACACCACTGTGGTCAACA+AGG 0.602995 2_1:-56359982 Msa0213430:CDS
GAGCTGTGTTCGATATCTGT+CGG 0.603441 2_1:+56359795 None:intergenic
GCCTCGACACAGAAATTCAG+AGG 0.603945 2_1:-56360664 Msa0213430:CDS
ATTGAAAGTGGAGAAGGTAA+CGG 0.608609 2_1:+56366685 None:intergenic
TAAACTTGTTTATGAAAACA+AGG 0.609122 2_1:+56359540 None:intergenic
TCAGGTAGAAGGTGGATCAA+CGG 0.609378 2_1:-56360348 Msa0213430:CDS
CGAATGAAAACTGTTAGGAA+AGG 0.609904 2_1:-56360548 Msa0213430:CDS
ATGAATCATACAGCAGTCCA+AGG 0.611982 2_1:+56365061 None:intergenic
AATAATTGGGAAGAGTGAAA+CGG 0.612270 2_1:+56366754 None:intergenic
GGTAAGATTCAGGTAGAAGG+TGG 0.612543 2_1:-56360356 Msa0213430:CDS
GTGACGTAAAGGGGAAGTAA+CGG 0.613472 2_1:+56366776 None:intergenic
TTCTCGTCCACGTTAAACCA+AGG 0.615002 2_1:+56363580 None:intergenic
ATGACCTTTCACATAAGGAT+CGG 0.615098 2_1:+56363398 None:intergenic
TTAGCCGATCCTTATGTGAA+AGG 0.615463 2_1:-56363402 Msa0213430:CDS
CAAGAAAAGGCCATTCCTTG+AGG 0.616347 2_1:+56364300 None:intergenic
AGGGAACCTAACGATATATG+TGG 0.618706 2_1:-56360644 Msa0213430:CDS
TATGTGAAAGGTCATTTGGG+AGG 0.619001 2_1:-56363390 Msa0213430:CDS
TAACGGGAATGCATGTTGAA+GGG 0.621171 2_1:-56364540 Msa0213430:CDS
CCCGGCAAAGAGAGACGTCA+AGG 0.621860 2_1:-56360306 Msa0213430:CDS
TTTATGCCACTAAGTGCTGT+TGG 0.622596 2_1:-56359521 Msa0213430:three_prime_UTR
TATAGAGCCTTGGTTTAACG+TGG 0.622630 2_1:-56363587 Msa0213430:intron
GGTGTTTGGATACATCAGCC+AGG 0.623254 2_1:-56360734 Msa0213430:CDS
ACCCTGATATCAGTAATCAA+AGG 0.627115 2_1:+56364789 None:intergenic
AAGCGAAGTTCCCCAAATGT+GGG 0.628739 2_1:-56360711 Msa0213430:CDS
CCAGTGTGATGATGACCACT+TGG 0.631960 2_1:-56364760 Msa0213430:intron
GGAAATGGTTTGGATATGGT+GGG 0.633766 2_1:+56366623 None:intergenic
ACTTTCTCCAAAATGGCAAG+AGG 0.641409 2_1:-56363334 Msa0213430:CDS
TGATATCAGTAATCAAAGGT+GGG 0.644175 2_1:+56364793 None:intergenic
TTGTACTTCTCTAAGAACCA+TGG 0.644582 2_1:+56365085 None:intergenic
GACTTCACTCACCTCAACAA+GGG 0.645139 2_1:+56363989 None:intergenic
ATTGTGAACCTCATTAACAT+CGG 0.648603 2_1:+56360052 None:intergenic
GGTAGGGGTGAAGTTCCTCA+AGG 0.658397 2_1:-56364315 Msa0213430:CDS
TAGAAGGTGGATCAACGGAA+GGG 0.663587 2_1:-56360343 Msa0213430:CDS
TCTACCTGAATCTTACCAGT+CGG 0.664384 2_1:+56360362 None:intergenic
ACATGATAAAGAAGAAATGG+TGG 0.668596 2_1:-56359901 Msa0213430:CDS
ACAGTCATCTGAAAATATGG+AGG 0.673844 2_1:+56364251 None:intergenic
CCAAGTGGTCATCATCACAC+TGG 0.674932 2_1:+56364760 None:intergenic
AGGCTCCTTGTTGACCACAG+TGG 0.684496 2_1:+56359977 None:intergenic
ATTGTGAACCACATTCACAT+CGG 0.691176 2_1:+56360013 None:intergenic
CCTCGACACAGAAATTCAGA+GGG 0.702383 2_1:-56360663 Msa0213430:CDS
AAATTTGTATCACCAGACCA+AGG 0.724755 2_1:-56363802 Msa0213430:intron
ACTGACCTAATGTTATCACG+TGG 0.727696 2_1:+56360443 None:intergenic
GTAGCTACATGCATCAACGT+CGG 0.739961 2_1:-56359724 Msa0213430:three_prime_UTR
TGTGCCATCCAACACCACTG+TGG 0.765001 2_1:-56359991 Msa0213430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTA+TGG - chr2_1:56360099-56360118 Msa0213430:CDS 0.0%
!!! AATATCAAATTTTAATCAAA+TGG - chr2_1:56359755-56359774 Msa0213430:three_prime_UTR 10.0%
!!! ATATCAAATTTTAATCAAAT+GGG - chr2_1:56359756-56359775 Msa0213430:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTTATGGTT+TGG - chr2_1:56360104-56360123 Msa0213430:CDS 10.0%
!!! TTTTTTTGTCTTATTTATAA+AGG - chr2_1:56360358-56360377 Msa0213430:CDS 10.0%
!!! TTTTTTGTCTTATTTATAAA+GGG - chr2_1:56360359-56360378 Msa0213430:CDS 10.0%
!!! TTTATATTTGTTTTTTCTAT+AGG - chr2_1:56361886-56361905 Msa0213430:intron 10.0%
!!! AATGATATCTAAAATAAAAT+TGG + chr2_1:56364268-56364287 None:intergenic 10.0%
!!! AATTTTATTTTAGATATCAT+TGG - chr2_1:56364267-56364286 Msa0213430:CDS 10.0%
!! TGGAAATATATTTATTATTA+TGG + chr2_1:56364383-56364402 None:intergenic 10.0%
!! TATTTACAATGAAAATAAAA+TGG - chr2_1:56365153-56365172 Msa0213430:CDS 10.0%
!!! AAAGAATATTTTAAAAAATG+CGG - chr2_1:56365952-56365971 Msa0213430:intron 10.0%
!!! TTATATGTTATGTTATATTT+TGG - chr2_1:56366614-56366633 Msa0213430:five_prime_UTR 10.0%
!! AAATTAAATGTGTGTAATTA+GGG + chr2_1:56359692-56359711 None:intergenic 15.0%
!! TAAATTAAATGTGTGTAATT+AGG + chr2_1:56359693-56359712 None:intergenic 15.0%
!!! TAATTACACACATTTAATTT+AGG - chr2_1:56359692-56359711 Msa0213430:three_prime_UTR 15.0%
!!! AATTACACACATTTAATTTA+GGG - chr2_1:56359693-56359712 Msa0213430:three_prime_UTR 15.0%
!! TGATATTTAATCAAAAAACA+CGG + chr2_1:56359742-56359761 None:intergenic 15.0%
!! TGAACAATTAAAAATATAAC+AGG + chr2_1:56362370-56362389 None:intergenic 15.0%
!!! ATTCAAAGATTTGTTTAATA+AGG + chr2_1:56362540-56362559 None:intergenic 15.0%
!! AACAAATTATAGTATATTTC+AGG - chr2_1:56362802-56362821 Msa0213430:intron 15.0%
!! AATACAATATAGAAATAAGA+GGG + chr2_1:56363782-56363801 None:intergenic 15.0%
!! AAAAATAAAATATATGTAGC+TGG - chr2_1:56364308-56364327 Msa0213430:CDS 15.0%
!! ATATTTATTATTATGGTCAA+TGG + chr2_1:56364376-56364395 None:intergenic 15.0%
!!! TCTTTTTGTTTCTAAAAATT+GGG + chr2_1:56364837-56364856 None:intergenic 15.0%
!!! TTCTTTTTGTTTCTAAAAAT+TGG + chr2_1:56364838-56364857 None:intergenic 15.0%
!! TTATACATATGTTTATATGT+CGG + chr2_1:56366459-56366478 None:intergenic 15.0%
!! ATATGTATAATTTGAGAAAA+TGG - chr2_1:56366469-56366488 Msa0213430:five_prime_UTR 15.0%
!!! AAATTTGAAATATGAATTGT+CGG - chr2_1:56366542-56366561 Msa0213430:intron 15.0%
!! GAATAGTAAAATATTGAAAG+TGG + chr2_1:56359558-56359577 None:intergenic 20.0%
!!! ATTACACACATTTAATTTAG+GGG - chr2_1:56359694-56359713 Msa0213430:three_prime_UTR 20.0%
!!! TTCTTCAGTTTTTGTTATAA+TGG - chr2_1:56359839-56359858 Msa0213430:three_prime_UTR 20.0%
!! AAAACAATCTAATCAAAGAA+GGG - chr2_1:56360521-56360540 Msa0213430:CDS 20.0%
!!! ATAAGGTTTCTATTGATTAA+AGG - chr2_1:56360674-56360693 Msa0213430:CDS 20.0%
!!! TCTATTGATTAAAGGATAAA+AGG - chr2_1:56360682-56360701 Msa0213430:CDS 20.0%
!! GTTATGATGATTTACTAATA+TGG - chr2_1:56360958-56360977 Msa0213430:intron 20.0%
!!! TTTTCTTTATCATTGTCTTT+AGG - chr2_1:56361013-56361032 Msa0213430:intron 20.0%
!! AATATATGAAAGGAACAAAA+AGG + chr2_1:56361287-56361306 None:intergenic 20.0%
!! TTTGTTCCTTTCATATATTA+TGG - chr2_1:56361288-56361307 Msa0213430:intron 20.0%
!! AAGAAACCATAATATATGAA+AGG + chr2_1:56361297-56361316 None:intergenic 20.0%
!!! AAATATTCTTTTGCTGATTA+AGG - chr2_1:56361769-56361788 Msa0213430:intron 20.0%
!!! TCAATGACTAATGATTTTAA+CGG + chr2_1:56362484-56362503 None:intergenic 20.0%
!! CTCTATAACAATAAGATTTA+TGG + chr2_1:56362628-56362647 None:intergenic 20.0%
!!! AATATATTTTCACTAGATGT+CGG - chr2_1:56363187-56363206 Msa0213430:intron 20.0%
!! AAAGCAAATGTATATTAACA+AGG + chr2_1:56363243-56363262 None:intergenic 20.0%
!! ATATACAAGTTTCACATTAT+TGG + chr2_1:56363682-56363701 None:intergenic 20.0%
!! GAATACAATATAGAAATAAG+AGG + chr2_1:56363783-56363802 None:intergenic 20.0%
!! ATATTATAACTTCTAGATTC+AGG - chr2_1:56363937-56363956 Msa0213430:intron 20.0%
!!! TTTTAATAGTTGGGAATTAA+GGG + chr2_1:56364008-56364027 None:intergenic 20.0%
!!! TTGTGTTTGTTTTAATAGTT+GGG + chr2_1:56364017-56364036 None:intergenic 20.0%
!! AGATTGAATATCATGAAAAA+AGG + chr2_1:56364222-56364241 None:intergenic 20.0%
!!! ATAAGTACATATGTTTGTTT+TGG + chr2_1:56364403-56364422 None:intergenic 20.0%
!! AACAATAGATCAAATAACAA+AGG + chr2_1:56365272-56365291 None:intergenic 20.0%
!!! CAATTTTGAATTATGTTTAC+AGG - chr2_1:56365304-56365323 Msa0213430:intron 20.0%
!! AATGAAAAAATTGTTATGTC+TGG - chr2_1:56366301-56366320 Msa0213430:CDS 20.0%
!! TATACATATGTTTATATGTC+GGG + chr2_1:56366458-56366477 None:intergenic 20.0%
!!! TTATGTTATATTTTGGTCAA+TGG - chr2_1:56366621-56366640 Msa0213430:five_prime_UTR 20.0%
!!! TAAACTTGTTTATGAAAACA+AGG + chr2_1:56366691-56366710 None:intergenic 20.0%
!!! ATGGATTGAGTTGAATAATT+GGG + chr2_1:56359490-56359509 None:intergenic 25.0%
!!! AATGGATTGAGTTGAATAAT+TGG + chr2_1:56359491-56359510 None:intergenic 25.0%
! TAAAATATTGAAAGTGGAGA+AGG + chr2_1:56359552-56359571 None:intergenic 25.0%
! AAGATTAATTGAAGTGGAAA+TGG + chr2_1:56359623-56359642 None:intergenic 25.0%
! AAGTCAAAGATTAATTGAAG+TGG + chr2_1:56359629-56359648 None:intergenic 25.0%
! ACTACTCATTAAATTTCACT+TGG - chr2_1:56359813-56359832 Msa0213430:three_prime_UTR 25.0%
! CTACTCATTAAATTTCACTT+GGG - chr2_1:56359814-56359833 Msa0213430:three_prime_UTR 25.0%
!!! TATGCTATGCTTTTTGATTT+TGG - chr2_1:56360042-56360061 Msa0213430:CDS 25.0%
!!! ATTAGTTGGTAGTTTTGTAA+AGG - chr2_1:56360270-56360289 Msa0213430:CDS 25.0%
!! TGGATCTATAATTTGTAGTT+TGG - chr2_1:56360325-56360344 Msa0213430:CDS 25.0%
! TTATAAAGGGTAAAGAGAAA+AGG - chr2_1:56360372-56360391 Msa0213430:CDS 25.0%
! TATAAAGGGTAAAGAGAAAA+GGG - chr2_1:56360373-56360392 Msa0213430:CDS 25.0%
! TAACCAAAAAAGGAAAGAAA+AGG - chr2_1:56360399-56360418 Msa0213430:CDS 25.0%
! AACCAAAAAAGGAAAGAAAA+GGG - chr2_1:56360400-56360419 Msa0213430:CDS 25.0%
!!! TTTGTTCTTTTTCTTTGGAA+AGG - chr2_1:56360446-56360465 Msa0213430:CDS 25.0%
! GAAAACAATCTAATCAAAGA+AGG - chr2_1:56360520-56360539 Msa0213430:CDS 25.0%
! GTCAAAGATAAATAACTGAA+AGG + chr2_1:56361196-56361215 None:intergenic 25.0%
! GCATTTGAACATAACTATTA+AGG + chr2_1:56361254-56361273 None:intergenic 25.0%
! TGTGAAACTAAGAAAAAGAT+TGG - chr2_1:56361638-56361657 Msa0213430:intron 25.0%
! GTGAAACTAAGAAAAAGATT+GGG - chr2_1:56361639-56361658 Msa0213430:intron 25.0%
!! GAATTTCAATTTTACCTAGA+CGG - chr2_1:56361725-56361744 Msa0213430:intron 25.0%
!!! TTTGTTTTTTCTATAGGTCT+TGG - chr2_1:56361892-56361911 Msa0213430:intron 25.0%
!!! TCAAACCTATTTTTACACAT+GGG - chr2_1:56361999-56362018 Msa0213430:intron 25.0%
! AATCATTAGTCATTGAACAA+AGG - chr2_1:56362488-56362507 Msa0213430:intron 25.0%
! TTTAATAAGGATTCTAGTGA+GGG + chr2_1:56362527-56362546 None:intergenic 25.0%
! AAAAATATCATCACAGAGAA+AGG + chr2_1:56362751-56362770 None:intergenic 25.0%
! ACTATACTAAAAACCACATA+AGG + chr2_1:56363043-56363062 None:intergenic 25.0%
!!! TGGTTTTTAGTATAGTTCAA+TGG - chr2_1:56363047-56363066 Msa0213430:intron 25.0%
! AAACACAGTGATTGAATAAT+TGG + chr2_1:56363450-56363469 None:intergenic 25.0%
!! TGTGAACATCAATGATTTTA+GGG - chr2_1:56363510-56363529 Msa0213430:intron 25.0%
!! AATAACAGTTCTTGATGATA+AGG - chr2_1:56363597-56363616 Msa0213430:intron 25.0%
! GAATGAATATAATTGAGGTA+AGG + chr2_1:56363646-56363665 None:intergenic 25.0%
! TATTATGTGAAAGTTGTAGA+TGG + chr2_1:56363834-56363853 None:intergenic 25.0%
!!! GTTTTAATAGTTGGGAATTA+AGG + chr2_1:56364009-56364028 None:intergenic 25.0%
!!! GTTGTGTTTGTTTTAATAGT+TGG + chr2_1:56364018-56364037 None:intergenic 25.0%
! ATGATGTTGTAAGATATTGT+AGG + chr2_1:56364669-56364688 None:intergenic 25.0%
! AAAGAATGTACTTGTTTGAT+TGG + chr2_1:56364704-56364723 None:intergenic 25.0%
! TGATTTCGATGAAAAGAAAT+AGG + chr2_1:56364756-56364775 None:intergenic 25.0%
! TCGAAATCAAATGAAAAGAA+AGG - chr2_1:56364767-56364786 Msa0213430:CDS 25.0%
! ATCAAATGAAAAGAAAGGAA+AGG - chr2_1:56364772-56364791 Msa0213430:CDS 25.0%
! AGAATAATAAGTGGAACAAA+AGG - chr2_1:56364795-56364814 Msa0213430:CDS 25.0%
! TATGAGCCAATAAAAATTGA+AGG - chr2_1:56365458-56365477 Msa0213430:intron 25.0%
! TTTATCTTCAGCATTATCAT+CGG + chr2_1:56365657-56365676 None:intergenic 25.0%
!!! TTTTTTCATTAGACCTTTCA+GGG + chr2_1:56366291-56366310 None:intergenic 25.0%
!!! ATTTTTTCATTAGACCTTTC+AGG + chr2_1:56366292-56366311 None:intergenic 25.0%
!!! ATGTAGAGTACTTTTTGTTT+TGG - chr2_1:56366648-56366667 Msa0213430:five_prime_UTR 25.0%
!!! TTTTTGTTTTGGTGTAAAGT+AGG - chr2_1:56366659-56366678 Msa0213430:five_prime_UTR 25.0%
!!! TTTTGTTTTGGTGTAAAGTA+GGG - chr2_1:56366660-56366679 Msa0213430:five_prime_UTR 25.0%
AATAATTGGGAAGAGTGAAA+CGG + chr2_1:56359477-56359496 None:intergenic 30.0%
AATTAGGGTTTACAAGGAAA+TGG + chr2_1:56359509-56359528 None:intergenic 30.0%
!! GTGATAAAGTGTTGCAATTA+GGG + chr2_1:56359524-56359543 None:intergenic 30.0%
TAATTGAAGTGGAAATGGTT+TGG + chr2_1:56359618-56359637 None:intergenic 30.0%
!!! GAATCGTTTTGATTTCTCTA+TGG - chr2_1:56359895-56359914 Msa0213430:CDS 30.0%
!!! TCATGCTGCTTTTTATTTTG+TGG - chr2_1:56359941-56359960 Msa0213430:CDS 30.0%
!! GGTTTTTGCTTTTGAACTTT+TGG - chr2_1:56360003-56360022 Msa0213430:CDS 30.0%
! TATGGTTTGGATTCATTAGT+TGG - chr2_1:56360117-56360136 Msa0213430:CDS 30.0%
GCTAAACTTTACTTAGTAAC+CGG + chr2_1:56360204-56360223 None:intergenic 30.0%
AAAAGGGTTGTAACCAAAAA+AGG - chr2_1:56360389-56360408 Msa0213430:CDS 30.0%
! TACCCTTTTCTTTCCTTTTT+TGG + chr2_1:56360405-56360424 None:intergenic 30.0%
! CTGACTTTGTTCTTTTTCTT+TGG - chr2_1:56360441-56360460 Msa0213430:CDS 30.0%
TTCATGAACGTTATGTTACA+AGG - chr2_1:56360469-56360488 Msa0213430:CDS 30.0%
AAATAGAATCTGAACTTGAG+TGG - chr2_1:56360580-56360599 Msa0213430:CDS 30.0%
TCAAAACACATGAAAAGGAA+GGG + chr2_1:56360636-56360655 None:intergenic 30.0%
TTCAAAACACATGAAAAGGA+AGG + chr2_1:56360637-56360656 None:intergenic 30.0%
!! TCCTTTTCATGTGTTTTGAA+TGG - chr2_1:56360637-56360656 Msa0213430:CDS 30.0%
TCCATTCAAAACACATGAAA+AGG + chr2_1:56360641-56360660 None:intergenic 30.0%
TGGATTATTGCTTGTCAATA+AGG - chr2_1:56360657-56360676 Msa0213430:CDS 30.0%
TTAGAACATGTTTGCATTCA+CGG + chr2_1:56360841-56360860 None:intergenic 30.0%
ATCATTGTCTTGAGAGTTAT+TGG - chr2_1:56360905-56360924 Msa0213430:CDS 30.0%
TCATTGTCTTGAGAGTTATT+GGG - chr2_1:56360906-56360925 Msa0213430:intron 30.0%
ACTAATATGGCCTATATGTA+TGG - chr2_1:56360971-56360990 Msa0213430:intron 30.0%
!! TTTCTGATTCTGAAACAGTT+CGG - chr2_1:56361039-56361058 Msa0213430:intron 30.0%
AAACATATGGCCTATATGTA+TGG - chr2_1:56361082-56361101 Msa0213430:intron 30.0%
GGAAATGTTTGAACTTCATA+TGG + chr2_1:56361233-56361252 None:intergenic 30.0%
TGAAAGGAACAAAAAGGAAA+AGG + chr2_1:56361281-56361300 None:intergenic 30.0%
CTGATCATACACAAAATCAA+AGG + chr2_1:56361348-56361367 None:intergenic 30.0%
TGATATCAGTAATCAAAGGT+GGG + chr2_1:56361438-56361457 None:intergenic 30.0%
ACCTTTGATTACTGATATCA+GGG - chr2_1:56361438-56361457 Msa0213430:intron 30.0%
TAAGAATGTTACATACCAAG+TGG + chr2_1:56361486-56361505 None:intergenic 30.0%
ATGTAACATTCTTAAGCAGA+AGG - chr2_1:56361492-56361511 Msa0213430:intron 30.0%
! GTTAGGAATGAATTTTCTCA+CGG - chr2_1:56361590-56361609 Msa0213430:intron 30.0%
! TTAGGAATGAATTTTCTCAC+GGG - chr2_1:56361591-56361610 Msa0213430:intron 30.0%
!! ATTCTTTTGCTGATTAAGGT+CGG - chr2_1:56361773-56361792 Msa0213430:intron 30.0%
!!! TTTTTTCTATAGGTCTTGGT+AGG - chr2_1:56361896-56361915 Msa0213430:intron 30.0%
! TTTTTCTATAGGTCTTGGTA+GGG - chr2_1:56361897-56361916 Msa0213430:intron 30.0%
TTGACAGTCATCTGAAAATA+TGG + chr2_1:56361983-56362002 None:intergenic 30.0%
!!! GTCAAACCTATTTTTACACA+TGG - chr2_1:56361998-56362017 Msa0213430:intron 30.0%
! AAATTACTTGATTCGAGAGA+AGG + chr2_1:56362159-56362178 None:intergenic 30.0%
CATGACAAATATCTTTACCT+TGG + chr2_1:56362446-56362465 None:intergenic 30.0%
GTTTAATAAGGATTCTAGTG+AGG + chr2_1:56362528-56362547 None:intergenic 30.0%
GTAACAATTATGTCAAGCAT+GGG + chr2_1:56362578-56362597 None:intergenic 30.0%
TGTAACAATTATGTCAAGCA+TGG + chr2_1:56362579-56362598 None:intergenic 30.0%
ATCTTATTGTTATAGAGCCT+TGG - chr2_1:56362631-56362650 Msa0213430:CDS 30.0%
TGCAAAAATCGAAATTGTTG+AGG - chr2_1:56362686-56362705 Msa0213430:CDS 30.0%
TAGTAACCATTTAGATCTGA+TGG + chr2_1:56362726-56362745 None:intergenic 30.0%
AGAAAACACTTTCTCCAAAA+TGG - chr2_1:56362887-56362906 Msa0213430:intron 30.0%
TTACAATCCCATGTTATGAT+GGG + chr2_1:56362931-56362950 None:intergenic 30.0%
ATTTCTATGATGACATCCTT+GGG - chr2_1:56362986-56363005 Msa0213430:intron 30.0%
! ACTTTGAACTTTTCCTTATG+TGG - chr2_1:56363027-56363046 Msa0213430:intron 30.0%
GAAACATGATAGTTTCTCAT+TGG + chr2_1:56363111-56363130 None:intergenic 30.0%
CTAAAATTAGCAGTATGAGA+TGG + chr2_1:56363133-56363152 None:intergenic 30.0%
CTTCATGATAATAGCAGAAA+AGG + chr2_1:56363316-56363335 None:intergenic 30.0%
ACAGTGATTGAATAATTGGA+AGG + chr2_1:56363446-56363465 None:intergenic 30.0%
! CTGTGAACATCAATGATTTT+AGG - chr2_1:56363509-56363528 Msa0213430:intron 30.0%
!! AACATCAATGATTTTAGGGA+CGG - chr2_1:56363514-56363533 Msa0213430:CDS 30.0%
CCACTACAGAAAGTAAAAAT+GGG - chr2_1:56363559-56363578 Msa0213430:CDS 30.0%
CACTACAGAAAGTAAAAATG+GGG - chr2_1:56363560-56363579 Msa0213430:CDS 30.0%
! AGTTCTTGATGATAAGGAAA+AGG - chr2_1:56363603-56363622 Msa0213430:intron 30.0%
AATATAATTGAGGTAAGGTG+GGG + chr2_1:56363641-56363660 None:intergenic 30.0%
GAATATAATTGAGGTAAGGT+GGG + chr2_1:56363642-56363661 None:intergenic 30.0%
TGAATATAATTGAGGTAAGG+TGG + chr2_1:56363643-56363662 None:intergenic 30.0%
CATTATTGGATAATATTGCG+AGG + chr2_1:56363668-56363687 None:intergenic 30.0%
ATGTTGAGGAATCAACATAT+AGG + chr2_1:56363721-56363740 None:intergenic 30.0%
ATAGAAATAAGAGGGATTGT+AGG + chr2_1:56363774-56363793 None:intergenic 30.0%
! ATCTGGAAGTGTATAGAAAA+GGG + chr2_1:56363807-56363826 None:intergenic 30.0%
! AATCTGGAAGTGTATAGAAA+AGG + chr2_1:56363808-56363827 None:intergenic 30.0%
AAGTTGTAGATGGTATAATC+TGG + chr2_1:56363824-56363843 None:intergenic 30.0%
TGAGTGTTAAAATGTGTGTT+CGG + chr2_1:56363978-56363997 None:intergenic 30.0%
ATAAAGATCTCCAAAACGAT+TGG + chr2_1:56364130-56364149 None:intergenic 30.0%
GGAGATCTTTATGTATTAAC+AGG - chr2_1:56364138-56364157 Msa0213430:intron 30.0%
!! CAATGCAACAATGTTTTTGA+AGG + chr2_1:56364186-56364205 None:intergenic 30.0%
GTCAATTTCATTCTTGACAA+CGG + chr2_1:56364491-56364510 None:intergenic 30.0%
! AAATTGACTTAGTACAAGAG+AGG - chr2_1:56364503-56364522 Msa0213430:intron 30.0%
! AATTGACTTAGTACAAGAGA+GGG - chr2_1:56364504-56364523 Msa0213430:intron 30.0%
AAGGAAAGGAGAATAATAAG+TGG - chr2_1:56364786-56364805 Msa0213430:CDS 30.0%
ATCTGGAAAATCTCCAAAAT+TGG - chr2_1:56365427-56365446 Msa0213430:intron 30.0%
! TCATAGTTATCTGCCAATTT+TGG + chr2_1:56365443-56365462 None:intergenic 30.0%
!! TCTTGGCCTTCAATTTTTAT+TGG + chr2_1:56365467-56365486 None:intergenic 30.0%
TTATCTTCAGCATTATCATC+GGG + chr2_1:56365656-56365675 None:intergenic 30.0%
AACATCGAATGAAAACTGTT+AGG - chr2_1:56365675-56365694 Msa0213430:intron 30.0%
ATGTTCTTTCTCGTAAATCA+AGG - chr2_1:56365999-56366018 Msa0213430:intron 30.0%
CGTAAATCAAGGAAATCAAA+AGG - chr2_1:56366010-56366029 Msa0213430:intron 30.0%
!!! TTTAGTTCTTGCATCTTTTG+GGG + chr2_1:56366110-56366129 None:intergenic 30.0%
!!! CTTTAGTTCTTGCATCTTTT+GGG + chr2_1:56366111-56366130 None:intergenic 30.0%
!!! ACTTTAGTTCTTGCATCTTT+TGG + chr2_1:56366112-56366131 None:intergenic 30.0%
! AAGAACTAAAGTTGTTTCAC+AGG - chr2_1:56366120-56366139 Msa0213430:intron 30.0%
ATTGTGAACCTCATTAACAT+CGG + chr2_1:56366179-56366198 None:intergenic 30.0%
! TTTTTCATTAGACCTTTCAG+GGG + chr2_1:56366290-56366309 None:intergenic 30.0%
CGAACATGATAAAGAAGAAA+TGG - chr2_1:56366324-56366343 Msa0213430:CDS 30.0%
ACATGATAAAGAAGAAATGG+TGG - chr2_1:56366327-56366346 Msa0213430:CDS 30.0%
!! AACAAAAAGTACTCTACATG+TGG + chr2_1:56366647-56366666 None:intergenic 30.0%
TGTTGCAATTAGGGTTTACA+AGG + chr2_1:56359515-56359534 None:intergenic 35.0%
!! GGTGATAAAGTGTTGCAATT+AGG + chr2_1:56359525-56359544 None:intergenic 35.0%
ATTGAAAGTGGAGAAGGTAA+CGG + chr2_1:56359546-56359565 None:intergenic 35.0%
! AAGTGGAAATGGTTTGGATA+TGG + chr2_1:56359612-56359631 None:intergenic 35.0%
!!! TTCATTCCTTTTTTCGCAAG+TGG - chr2_1:56359660-56359679 Msa0213430:three_prime_UTR 35.0%
!!! TCATTCCTTTTTTCGCAAGT+GGG - chr2_1:56359661-56359680 Msa0213430:three_prime_UTR 35.0%
! GGCTTTGATCTATCTTTATC+TGG - chr2_1:56359962-56359981 Msa0213430:CDS 35.0%
TGATCTATCTTTATCTGGTG+AGG - chr2_1:56359967-56359986 Msa0213430:CDS 35.0%
GAGTACTTATTCTGAGTGAT+TGG - chr2_1:56360305-56360324 Msa0213430:CDS 35.0%
AACGTTATGTTACAAGGCTA+AGG - chr2_1:56360475-56360494 Msa0213430:CDS 35.0%
CAAAACACATGAAAAGGAAG+GGG + chr2_1:56360635-56360654 None:intergenic 35.0%
GTGAATGCAAACATGTTCTA+AGG - chr2_1:56360840-56360859 Msa0213430:CDS 35.0%
CATTGTCTTGAGAGTTATTG+GGG - chr2_1:56360907-56360926 Msa0213430:intron 35.0%
GCAATCTGTTCCATACATAT+AGG + chr2_1:56360984-56361003 None:intergenic 35.0%
ACCATGCAGTTGAAAACATA+TGG - chr2_1:56361069-56361088 Msa0213430:intron 35.0%
GCAATCTGTTCCATACATAT+AGG + chr2_1:56360984-56361003 None:intergenic 35.0%
! TTTTACTCCCTATCATACCA+TGG - chr2_1:56361126-56361145 Msa0213430:intron 35.0%
CTAAGAACCATGGTATGATA+GGG + chr2_1:56361136-56361155 None:intergenic 35.0%
TCTAAGAACCATGGTATGAT+AGG + chr2_1:56361137-56361156 None:intergenic 35.0%
! TTGTACTTCTCTAAGAACCA+TGG + chr2_1:56361146-56361165 None:intergenic 35.0%
! TCTTAGAGAAGTACAAACCT+TGG - chr2_1:56361150-56361169 Msa0213430:intron 35.0%
GGAACAAAAAGGAAAAGGAA+TGG + chr2_1:56361276-56361295 None:intergenic 35.0%
TTCTGTTCAGCACCTATATT+TGG - chr2_1:56361405-56361424 Msa0213430:intron 35.0%
TCTGTTCAGCACCTATATTT+GGG - chr2_1:56361406-56361425 Msa0213430:intron 35.0%
CTGATATCAGTAATCAAAGG+TGG + chr2_1:56361439-56361458 None:intergenic 35.0%
CACCTTTGATTACTGATATC+AGG - chr2_1:56361437-56361456 Msa0213430:intron 35.0%
ACCCTGATATCAGTAATCAA+AGG + chr2_1:56361442-56361461 None:intergenic 35.0%
CTAAGAAAAAGATTGGGCTT+TGG - chr2_1:56361645-56361664 Msa0213430:intron 35.0%
GTCAACAAAGCTGCATATAA+CGG - chr2_1:56361671-56361690 Msa0213430:intron 35.0%
TCAACAAAGCTGCATATAAC+GGG - chr2_1:56361672-56361691 Msa0213430:intron 35.0%
CATATACAACAAATCCGTCT+AGG + chr2_1:56361742-56361761 None:intergenic 35.0%
! TTTTCTATAGGTCTTGGTAG+GGG - chr2_1:56361898-56361917 Msa0213430:intron 35.0%
ACAGTCATCTGAAAATATGG+AGG + chr2_1:56361980-56361999 None:intergenic 35.0%
TCAAGCCCATGTGTAAAAAT+AGG + chr2_1:56362007-56362026 None:intergenic 35.0%
ACATCAACAACCAGCATATT+GGG + chr2_1:56362402-56362421 None:intergenic 35.0%
AACATCAACAACCAGCATAT+TGG + chr2_1:56362403-56362422 None:intergenic 35.0%
AAATTTGTATCACCAGACCA+AGG - chr2_1:56362426-56362445 Msa0213430:intron 35.0%
CAAATATCTTTACCTTGGTC+TGG + chr2_1:56362441-56362460 None:intergenic 35.0%
! TCGATTTTTGCATAAGCAAC+AGG + chr2_1:56362678-56362697 None:intergenic 35.0%
ATGAAGCCATCAGATCTAAA+TGG - chr2_1:56362717-56362736 Msa0213430:CDS 35.0%
ATGACCTTTCACATAAGGAT+CGG + chr2_1:56362833-56362852 None:intergenic 35.0%
TCCTTATGTGAAAGGTCATT+TGG - chr2_1:56362834-56362853 Msa0213430:intron 35.0%
CCTTATGTGAAAGGTCATTT+GGG - chr2_1:56362835-56362854 Msa0213430:intron 35.0%
ATTTGGGAGGATATAGATTC+AGG - chr2_1:56362851-56362870 Msa0213430:intron 35.0%
TCAGAATTCCCATCATAACA+TGG - chr2_1:56362920-56362939 Msa0213430:intron 35.0%
CAGAATTCCCATCATAACAT+GGG - chr2_1:56362921-56362940 Msa0213430:intron 35.0%
GTTACAATCCCATGTTATGA+TGG + chr2_1:56362932-56362951 None:intergenic 35.0%
ATGGGATTGTAACAATGTTC+TGG - chr2_1:56362939-56362958 Msa0213430:intron 35.0%
CAAGGATGTCATCATAGAAA+TGG + chr2_1:56362987-56363006 None:intergenic 35.0%
CATTTCTATGATGACATCCT+TGG - chr2_1:56362985-56363004 Msa0213430:intron 35.0%
AAGTTCAAAGTTCAGACAGA+CGG + chr2_1:56363018-56363037 None:intergenic 35.0%
TTAGACTACCTGTACAATAG+TGG - chr2_1:56363149-56363168 Msa0213430:intron 35.0%
TAGACTACCTGTACAATAGT+GGG - chr2_1:56363150-56363169 Msa0213430:intron 35.0%
ATGATAATAGCAGAAAAGGC+AGG + chr2_1:56363312-56363331 None:intergenic 35.0%
! CAAACAAAGTGCTAGAGAAA+AGG + chr2_1:56363376-56363395 None:intergenic 35.0%
! CTTTTCTCTAGCACTTTGTT+TGG - chr2_1:56363374-56363393 Msa0213430:CDS 35.0%
!! ACATCAATGATTTTAGGGAC+GGG - chr2_1:56363515-56363534 Msa0213430:CDS 35.0%
ACGGGCAAAAATATGATAAG+TGG - chr2_1:56363533-56363552 Msa0213430:CDS 35.0%
CGGGCAAAAATATGATAAGT+GGG - chr2_1:56363534-56363553 Msa0213430:CDS 35.0%
GCCACTACAGAAAGTAAAAA+TGG - chr2_1:56363558-56363577 Msa0213430:CDS 35.0%
!! CCCATTTTTACTTTCTGTAG+TGG + chr2_1:56363562-56363581 None:intergenic 35.0%
TACAGAAAGTAAAAATGGGG+AGG - chr2_1:56363563-56363582 Msa0213430:CDS 35.0%
ATATAATTGAGGTAAGGTGG+GGG + chr2_1:56363640-56363659 None:intergenic 35.0%
GCGAGGAATGAATATAATTG+AGG + chr2_1:56363651-56363670 None:intergenic 35.0%
! GAGGCACTATTATACTTATG+TGG + chr2_1:56363752-56363771 None:intergenic 35.0%
GAGTGTTAAAATGTGTGTTC+GGG + chr2_1:56363977-56363996 None:intergenic 35.0%
TAATAGTTGGGAATTAAGGG+CGG + chr2_1:56364005-56364024 None:intergenic 35.0%
!! TGGCTCTTTTTCATTTTGTG+TGG + chr2_1:56364110-56364129 None:intergenic 35.0%
! TGAAAAAGAGCCAATCGTTT+TGG - chr2_1:56364117-56364136 Msa0213430:intron 35.0%
TTCTTGACAACGGAATGAAT+TGG + chr2_1:56364481-56364500 None:intergenic 35.0%
GAATTAACGCAAGTCTTACT+TGG + chr2_1:56364545-56364564 None:intergenic 35.0%
ATAACTAGAGTGTAACTCGT+GGG + chr2_1:56365064-56365083 None:intergenic 35.0%
TATAACTAGAGTGTAACTCG+TGG + chr2_1:56365065-56365084 None:intergenic 35.0%
AATAACAAAGGAGCAACTTG+TGG + chr2_1:56365260-56365279 None:intergenic 35.0%
CTTCAATGTCTATTGTCTCT+TGG + chr2_1:56365349-56365368 None:intergenic 35.0%
! TGGAGATTTTCCAGATGAAA+CGG + chr2_1:56365423-56365442 None:intergenic 35.0%
TTACAGCCACATATATCGTT+AGG + chr2_1:56365593-56365612 None:intergenic 35.0%
CGAATGAAAACTGTTAGGAA+AGG - chr2_1:56365680-56365699 Msa0213430:intron 35.0%
! AAATCGGTTCTGTATTTCGT+AGG - chr2_1:56365711-56365730 Msa0213430:CDS 35.0%
AGGTCAGTAAATGCTTCTAA+AGG - chr2_1:56365800-56365819 Msa0213430:intron 35.0%
GGTCAGTAAATGCTTCTAAA+GGG - chr2_1:56365801-56365820 Msa0213430:intron 35.0%
! GTCAGTAAATGCTTCTAAAG+GGG - chr2_1:56365802-56365821 Msa0213430:intron 35.0%
ACCTCATTAACATCGGATTT+GGG + chr2_1:56366172-56366191 None:intergenic 35.0%
AACCTCATTAACATCGGATT+TGG + chr2_1:56366173-56366192 None:intergenic 35.0%
ATTGTGAACCACATTCACAT+CGG + chr2_1:56366218-56366237 None:intergenic 35.0%
AAGAAATGGTGGCAGATAAA+AGG - chr2_1:56366338-56366357 Msa0213430:CDS 35.0%
AGAAATGGTGGCAGATAAAA+GGG - chr2_1:56366339-56366358 Msa0213430:CDS 35.0%
!! TTTTGGTGTAAAGTAGGGAT+AGG - chr2_1:56366665-56366684 Msa0213430:five_prime_UTR 35.0%
! GGAAATGGTTTGGATATGGT+GGG + chr2_1:56359608-56359627 None:intergenic 40.0%
! TGGAAATGGTTTGGATATGG+TGG + chr2_1:56359609-56359628 None:intergenic 40.0%
!!! CATTCCTTTTTTCGCAAGTG+GGG - chr2_1:56359662-56359681 Msa0213430:three_prime_UTR 40.0%
TTAACCCCACTTGCGAAAAA+AGG + chr2_1:56359669-56359688 None:intergenic 40.0%
! TAGGGGTTTCCTTTTTAACG+CGG - chr2_1:56359711-56359730 Msa0213430:three_prime_UTR 40.0%
ACGGAAAAACCGCGTTAAAA+AGG + chr2_1:56359723-56359742 None:intergenic 40.0%
GTTTCAATCTTGCATCATGC+TGG - chr2_1:56359873-56359892 Msa0213430:CDS 40.0%
CTTTATCTGGTGAGGATTCA+TGG - chr2_1:56359975-56359994 Msa0213430:CDS 40.0%
! TGGTGAGGATTCATGGTTTT+TGG - chr2_1:56359982-56360001 Msa0213430:CDS 40.0%
GGTTTGGATTCATTAGTTGG+TGG - chr2_1:56360120-56360139 Msa0213430:CDS 40.0%
!! TGTTAACCCTCCAGTTTTGA+GGG - chr2_1:56360153-56360172 Msa0213430:CDS 40.0%
TCGGGTTCTTCTGAATTAGT+TGG - chr2_1:56360256-56360275 Msa0213430:CDS 40.0%
! AGTAGTGAGCTCTGCAATTT+TGG + chr2_1:56360796-56360815 None:intergenic 40.0%
! CTCACTACTCACTGTGATTT+TGG - chr2_1:56360807-56360826 Msa0213430:CDS 40.0%
! GCCATATGTTTTCAACTGCA+TGG + chr2_1:56361073-56361092 None:intergenic 40.0%
ATGAATCATACAGCAGTCCA+AGG + chr2_1:56361170-56361189 None:intergenic 40.0%
GTGGGTTTCTTCCCAAATAT+AGG + chr2_1:56361420-56361439 None:intergenic 40.0%
! TTTTACGCTGTGATCAATGC+AGG - chr2_1:56361560-56361579 Msa0213430:intron 40.0%
TCAATGCAGGTTCTTGAGTT+AGG - chr2_1:56361573-56361592 Msa0213430:intron 40.0%
! ATAACGGGAATGCATGTTGA+AGG - chr2_1:56361687-56361706 Msa0213430:intron 40.0%
TAACGGGAATGCATGTTGAA+GGG - chr2_1:56361688-56361707 Msa0213430:intron 40.0%
ACACGTATACGACCAAGAAA+AGG + chr2_1:56361944-56361963 None:intergenic 40.0%
!! TCGTGACTTTTCGTTGTTTC+AGG - chr2_1:56362186-56362205 Msa0213430:intron 40.0%
AAGGGTCTGTTCAAAAGCAA+TGG + chr2_1:56362224-56362243 None:intergenic 40.0%
! TTTTGAACAGACCCTTGTTG+AGG - chr2_1:56362228-56362247 Msa0213430:intron 40.0%
AAATTTGCAGCCCAATATGC+TGG - chr2_1:56362389-56362408 Msa0213430:intron 40.0%
AGGATTCTAGTGAGGGTTAT+GGG + chr2_1:56362520-56362539 None:intergenic 40.0%
AAGGATTCTAGTGAGGGTTA+TGG + chr2_1:56362521-56362540 None:intergenic 40.0%
TATAGAGCCTTGGTTTAACG+TGG - chr2_1:56362641-56362660 Msa0213430:CDS 40.0%
TTAGCCGATCCTTATGTGAA+AGG - chr2_1:56362826-56362845 Msa0213430:intron 40.0%
CCCAAATGACCTTTCACATA+AGG + chr2_1:56362838-56362857 None:intergenic 40.0%
TATGTGAAAGGTCATTTGGG+AGG - chr2_1:56362838-56362857 Msa0213430:intron 40.0%
ACTTTCTCCAAAATGGCAAG+AGG - chr2_1:56362894-56362913 Msa0213430:intron 40.0%
!! CTGAATTCCTCTTGCCATTT+TGG + chr2_1:56362904-56362923 None:intergenic 40.0%
GGTTATTGAAGTTCGTGACA+AGG - chr2_1:56362960-56362979 Msa0213430:intron 40.0%
CACTAGATGTCGGTGTAAAA+TGG - chr2_1:56363197-56363216 Msa0213430:intron 40.0%
AGGAATCAACATATAGGCTC+AGG + chr2_1:56363715-56363734 None:intergenic 40.0%
ATGTGGAGTGAACAATGTTG+AGG + chr2_1:56363735-56363754 None:intergenic 40.0%
GAAATAAGAGGGATTGTAGG+AGG + chr2_1:56363771-56363790 None:intergenic 40.0%
! TGAAGTCCGCACATTTTTGT+AGG + chr2_1:56364338-56364357 None:intergenic 40.0%
ATAACTAGAGTGTAACCCGT+GGG + chr2_1:56365195-56365214 None:intergenic 40.0%
TATAACTAGAGTGTAACCCG+TGG + chr2_1:56365196-56365215 None:intergenic 40.0%
! TTTTCTTGGCTCCCACATTT+GGG + chr2_1:56365531-56365550 None:intergenic 40.0%
AGGGAACCTAACGATATATG+TGG - chr2_1:56365584-56365603 Msa0213430:intron 40.0%
GGCTGTAATTCAACTGTATC+TGG - chr2_1:56365605-56365624 Msa0213430:intron 40.0%
!! ATACAGAACCGATTTTGTGC+AGG + chr2_1:56365706-56365725 None:intergenic 40.0%
GTTCTGTATTTCGTAGGAGT+CGG - chr2_1:56365717-56365736 Msa0213430:CDS 40.0%
ATTTCGTAGGAGTCGGAAAA+TGG - chr2_1:56365724-56365743 Msa0213430:CDS 40.0%
CGGAAAATGGACGATAATTC+AGG - chr2_1:56365737-56365756 Msa0213430:CDS 40.0%
CTAATGTTATCACGTGGAGA+TGG + chr2_1:56365782-56365801 None:intergenic 40.0%
CATCTCCACGTGATAACATT+AGG - chr2_1:56365780-56365799 Msa0213430:intron 40.0%
ACTGACCTAATGTTATCACG+TGG + chr2_1:56365788-56365807 None:intergenic 40.0%
! GTAAATGCTTCTAAAGGGGT+TGG - chr2_1:56365806-56365825 Msa0213430:intron 40.0%
GTTATGGATGATAACACTGC+TGG - chr2_1:56365839-56365858 Msa0213430:intron 40.0%
TCTACCTGAATCTTACCAGT+CGG + chr2_1:56365869-56365888 None:intergenic 40.0%
ACTGGTAAGATTCAGGTAGA+AGG - chr2_1:56365869-56365888 Msa0213430:intron 40.0%
ACCAATGTTACCTTGAGCAA+TGG + chr2_1:56366146-56366165 None:intergenic 40.0%
CTCATTAACATCGGATTTGG+GGG + chr2_1:56366170-56366189 None:intergenic 40.0%
CCTCATTAACATCGGATTTG+GGG + chr2_1:56366171-56366190 None:intergenic 40.0%
ACCACATTCACATCGGATTT+GGG + chr2_1:56366211-56366230 None:intergenic 40.0%
AACCACATTCACATCGGATT+TGG + chr2_1:56366212-56366231 None:intergenic 40.0%
! TTTATGCCACTAAGTGCTGT+TGG - chr2_1:56366707-56366726 Msa0213430:five_prime_UTR 40.0%
!!! GTTGTACTTTTTCAGCTCAG+AGG - chr2_1:56366731-56366750 Msa0213430:five_prime_UTR 40.0%
TGACGTAAAGGGGAAGTAAC+GGG + chr2_1:56359454-56359473 None:intergenic 45.0%
GTGACGTAAAGGGGAAGTAA+CGG + chr2_1:56359455-56359474 None:intergenic 45.0%
AGTGAAACGGTGACGTAAAG+GGG + chr2_1:56359464-56359483 None:intergenic 45.0%
GAGTGAAACGGTGACGTAAA+GGG + chr2_1:56359465-56359484 None:intergenic 45.0%
AGAGTGAAACGGTGACGTAA+AGG + chr2_1:56359466-56359485 None:intergenic 45.0%
! GTGTTAACCCTCCAGTTTTG+AGG - chr2_1:56360152-56360171 Msa0213430:CDS 45.0%
TTCCGTCCAAAGATCGAACT+CGG - chr2_1:56360237-56360256 Msa0213430:CDS 45.0%
AAGAACCCGAGTTCGATCTT+TGG + chr2_1:56360246-56360265 None:intergenic 45.0%
!! CTGATTCTGAAACAGTTCGG+TGG - chr2_1:56361042-56361061 Msa0213430:intron 45.0%
ATGCATGTTGAAGGGAAGGT+AGG - chr2_1:56361696-56361715 Msa0213430:intron 45.0%
CAAGAAAAGGCCATTCCTTG+AGG + chr2_1:56361931-56361950 None:intergenic 45.0%
! CTCAAGGAATGGCCTTTTCT+TGG - chr2_1:56361929-56361948 Msa0213430:intron 45.0%
CTTGATGTGACAGAACTTCC+AGG - chr2_1:56362022-56362041 Msa0213430:intron 45.0%
ACAGAACTTCCAGGAATTGC+TGG - chr2_1:56362031-56362050 Msa0213430:intron 45.0%
GACTTCACTCACCTCAACAA+GGG + chr2_1:56362242-56362261 None:intergenic 45.0%
AGACTTCACTCACCTCAACA+AGG + chr2_1:56362243-56362262 None:intergenic 45.0%
GGATTCTAGTGAGGGTTATG+GGG + chr2_1:56362519-56362538 None:intergenic 45.0%
TTCTCGTCCACGTTAAACCA+AGG + chr2_1:56362651-56362670 None:intergenic 45.0%
TTGGTTTAACGTGGACGAGA+AGG - chr2_1:56362650-56362669 Msa0213430:CDS 45.0%
CACATCACCCACTATTGTAC+AGG + chr2_1:56363160-56363179 None:intergenic 45.0%
!! CTGTACAATAGTGGGTGATG+TGG - chr2_1:56363158-56363177 Msa0213430:intron 45.0%
AACCAATGTCACTCTCTTGC+AGG - chr2_1:56363479-56363498 Msa0213430:intron 45.0%
ACCAATGTCACTCTCTTGCA+GGG - chr2_1:56363480-56363499 Msa0213430:intron 45.0%
GGCAAGCCTACAAAAATGTG+CGG - chr2_1:56364329-56364348 Msa0213430:intron 45.0%
! CTTAGTACAAGAGAGGGCAT+TGG - chr2_1:56364510-56364529 Msa0213430:intron 45.0%
GCAAATGAGACCACCAACAA+AGG - chr2_1:56365386-56365405 Msa0213430:intron 45.0%
TGAGAAGGAACCTTTGTTGG+TGG + chr2_1:56365399-56365418 None:intergenic 45.0%
GGATGAGAAGGAACCTTTGT+TGG + chr2_1:56365402-56365421 None:intergenic 45.0%
TCCTTCTCATCCGTTTCATC+TGG - chr2_1:56365410-56365429 Msa0213430:intron 45.0%
TCCAGATGAAACGGATGAGA+AGG + chr2_1:56365414-56365433 None:intergenic 45.0%
ATTGAAGGCCAAGAGAAGAC+AGG - chr2_1:56365473-56365492 Msa0213430:intron 45.0%
TCCAAACACCTGTCTTCTCT+TGG + chr2_1:56365484-56365503 None:intergenic 45.0%
AAGCGAAGTTCCCCAAATGT+GGG - chr2_1:56365517-56365536 Msa0213430:intron 45.0%
TTTCTTGGCTCCCACATTTG+GGG + chr2_1:56365530-56365549 None:intergenic 45.0%
! CTTTTCTTGGCTCCCACATT+TGG + chr2_1:56365532-56365551 None:intergenic 45.0%
CAAATGTGGGAGCCAAGAAA+AGG - chr2_1:56365530-56365549 Msa0213430:intron 45.0%
!!! CGTCGATTCTTGCCTTTTCT+TGG + chr2_1:56365545-56365564 None:intergenic 45.0%
CCTCGACACAGAAATTCAGA+GGG - chr2_1:56365565-56365584 Msa0213430:intron 45.0%
ACTGCTGCTGTCATTGTTCA+AGG + chr2_1:56365633-56365652 None:intergenic 45.0%
AGGAAAGGCCTGCACAAAAT+CGG - chr2_1:56365695-56365714 Msa0213430:intron 45.0%
TAATTCAGGTCCTATTGCGC+AGG - chr2_1:56365751-56365770 Msa0213430:CDS 45.0%
!! GGTTGGCGTGAAGTTTGTTA+TGG - chr2_1:56365823-56365842 Msa0213430:intron 45.0%
CTTTCCGACTGGTAAGATTC+AGG - chr2_1:56365862-56365881 Msa0213430:intron 45.0%
GGTAAGATTCAGGTAGAAGG+TGG - chr2_1:56365872-56365891 Msa0213430:intron 45.0%
TCAGGTAGAAGGTGGATCAA+CGG - chr2_1:56365880-56365899 Msa0213430:intron 45.0%
TAGAAGGTGGATCAACGGAA+GGG - chr2_1:56365885-56365904 Msa0213430:intron 45.0%
AAAGAGAGACGTCAAGGACA+TGG - chr2_1:56365928-56365947 Msa0213430:intron 45.0%
GCCATTGCTCAAGGTAACAT+TGG - chr2_1:56366142-56366161 Msa0213430:intron 45.0%
CCCCAAATCCGATGTTAATG+AGG - chr2_1:56366168-56366187 Msa0213430:intron 45.0%
CACATTCACATCGGATTTGG+GGG + chr2_1:56366209-56366228 None:intergenic 45.0%
CCACATTCACATCGGATTTG+GGG + chr2_1:56366210-56366229 None:intergenic 45.0%
!! AAAAGGCATTCTCCCCTGAA+AGG - chr2_1:56366275-56366294 Msa0213430:CDS 45.0%
GAGCTGTGTTCGATATCTGT+CGG + chr2_1:56366436-56366455 None:intergenic 45.0%
GTAGCTACATGCATCAACGT+CGG - chr2_1:56366504-56366523 Msa0213430:five_prime_UTR 45.0%
ACATGCATCAACGTCGGTAT+CGG - chr2_1:56366510-56366529 Msa0213430:intron 45.0%
ACAACACCAACAGCACTTAG+TGG + chr2_1:56366716-56366735 None:intergenic 45.0%
!!! GTTATAATATTTTTTATTTT+TGG + chr2_1:56363927-56363946 None:intergenic 5.0%
!!! TAACCCTCCAGTTTTGAGGG+AGG - chr2_1:56360156-56360175 Msa0213430:CDS 50.0%
!!! AACCCTCCAGTTTTGAGGGA+GGG - chr2_1:56360157-56360176 Msa0213430:CDS 50.0%
CTTAGTAACCGGCTGAACTC+CGG + chr2_1:56360193-56360212 None:intergenic 50.0%
TCCGTCCAAAGATCGAACTC+GGG - chr2_1:56360238-56360257 Msa0213430:CDS 50.0%
ACCCGAGTTCGATCTTTGGA+CGG + chr2_1:56360242-56360261 None:intergenic 50.0%
CTTGAGAGTTATTGGGGCTG+TGG - chr2_1:56360913-56360932 Msa0213430:intron 50.0%
CCAAGTGGTCATCATCACAC+TGG + chr2_1:56361471-56361490 None:intergenic 50.0%
! CCAGTGTGATGATGACCACT+TGG - chr2_1:56361468-56361487 Msa0213430:intron 50.0%
GGGAATGCATGTTGAAGGGA+AGG - chr2_1:56361692-56361711 Msa0213430:intron 50.0%
TTGAAGGGAAGGTAGGACTG+CGG - chr2_1:56361703-56361722 Msa0213430:intron 50.0%
GGGTGAAGTTCCTCAAGGAA+TGG - chr2_1:56361918-56361937 Msa0213430:intron 50.0%
AACTTCCAGGAATTGCTGGC+TGG - chr2_1:56362035-56362054 Msa0213430:intron 50.0%
!! ATTGCTGGCTGGCTTGTAAG+TGG - chr2_1:56362046-56362065 Msa0213430:intron 50.0%
AGACAGACGGAACTAACCCA+AGG + chr2_1:56363005-56363024 None:intergenic 50.0%
TCCCTGCAAGAGAGTGACAT+TGG + chr2_1:56363484-56363503 None:intergenic 50.0%
TAATTGAGGTAAGGTGGGGG+AGG + chr2_1:56363637-56363656 None:intergenic 50.0%
GCCAAGAGAAGACAGGTGTT+TGG - chr2_1:56365480-56365499 Msa0213430:intron 50.0%
GGTGTTTGGATACATCAGCC+AGG - chr2_1:56365494-56365513 Msa0213430:intron 50.0%
ATTTGGGGAACTTCGCTTCC+TGG + chr2_1:56365515-56365534 None:intergenic 50.0%
GAAGCGAAGTTCCCCAAATG+TGG - chr2_1:56365516-56365535 Msa0213430:intron 50.0%
GCCTCGACACAGAAATTCAG+AGG - chr2_1:56365564-56365583 Msa0213430:intron 50.0%
CCCTCTGAATTTCTGTGTCG+AGG + chr2_1:56365568-56365587 None:intergenic 50.0%
GATGGAAAGTCCTGCGCAAT+AGG + chr2_1:56365764-56365783 None:intergenic 50.0%
GTAGAAGGTGGATCAACGGA+AGG - chr2_1:56365884-56365903 Msa0213430:intron 50.0%
TCCTTGACGTCTCTCTTTGC+CGG + chr2_1:56365926-56365945 None:intergenic 50.0%
GTTTCACAGGCCATTGCTCA+AGG - chr2_1:56366133-56366152 Msa0213430:intron 50.0%
CCCCAAATCCGATGTGAATG+TGG - chr2_1:56366207-56366226 Msa0213430:intron 50.0%
! TTGACCACAGTGGTGTTGGA+TGG + chr2_1:56366244-56366263 None:intergenic 50.0%
CTTGTTGACCACAGTGGTGT+TGG + chr2_1:56366248-56366267 None:intergenic 50.0%
CAACACCACTGTGGTCAACA+AGG - chr2_1:56366246-56366265 Msa0213430:intron 50.0%
GGTCAACAAGGAGCCTCAAA+AGG - chr2_1:56366258-56366277 Msa0213430:intron 50.0%
! TCAGGGGAGAATGCCTTTTG+AGG + chr2_1:56366274-56366293 None:intergenic 50.0%
!!! ACCCTCCAGTTTTGAGGGAG+GGG - chr2_1:56360158-56360177 Msa0213430:CDS 55.0%
CTGGTAATCCGGAGTTCAGC+CGG - chr2_1:56360182-56360201 Msa0213430:CDS 55.0%
GGTAGGGGTGAAGTTCCTCA+AGG - chr2_1:56361913-56361932 Msa0213430:intron 55.0%
ACAAGCCAGCCAGCAATTCC+TGG + chr2_1:56362043-56362062 None:intergenic 55.0%
!! GGCTGGCTTGTAAGTGGACA+TGG - chr2_1:56362052-56362071 Msa0213430:intron 55.0%
ATCAACACACGCGCAACCCA+CGG - chr2_1:56365176-56365195 Msa0213430:CDS 55.0%
!! AACACTGCTGGCTTTCCGAC+TGG - chr2_1:56365851-56365870 Msa0213430:intron 55.0%
TCTCTCTTTGCCGGGCTATC+AGG + chr2_1:56365917-56365936 None:intergenic 55.0%
CCTTGACGTCTCTCTTTGCC+GGG + chr2_1:56365925-56365944 None:intergenic 55.0%
TGTGCCATCCAACACCACTG+TGG - chr2_1:56366237-56366256 Msa0213430:intron 55.0%
AGGCTCCTTGTTGACCACAG+TGG + chr2_1:56366254-56366273 None:intergenic 55.0%
GCCCCTCCCTCAAAACTGGA+GGG + chr2_1:56360162-56360181 None:intergenic 60.0%
CGGCTGAACTCCGGATTACC+AGG + chr2_1:56360184-56360203 None:intergenic 60.0%
TGAGGTAAGGTGGGGGAGGA+GGG + chr2_1:56363633-56363652 None:intergenic 60.0%
TTGAGGTAAGGTGGGGGAGG+AGG + chr2_1:56363634-56363653 None:intergenic 60.0%
TCAACACACGCGCAACCCAC+GGG - chr2_1:56365177-56365196 Msa0213430:CDS 60.0%
GAGCAACTTGTGGCGCTACG+TGG + chr2_1:56365250-56365269 None:intergenic 60.0%
GGTGGATCAACGGAAGGGAG+TGG - chr2_1:56365890-56365909 Msa0213430:intron 60.0%
AGGGAGTGGTCCTGATAGCC+CGG - chr2_1:56365904-56365923 Msa0213430:intron 60.0%
CCCGGCAAAGAGAGACGTCA+AGG - chr2_1:56365922-56365941 Msa0213430:intron 60.0%
GGCCCCTCCCTCAAAACTGG+AGG + chr2_1:56360163-56360182 None:intergenic 65.0%
CCAGGCCCCTCCCTCAAAAC+TGG + chr2_1:56360166-56360185 None:intergenic 65.0%
!!! CCAGTTTTGAGGGAGGGGCC+TGG - chr2_1:56360163-56360182 Msa0213430:CDS 65.0%
GAGGGAGGGGCCTGGTAATC+CGG - chr2_1:56360171-56360190 Msa0213430:CDS 65.0%
GAGGTAAGGTGGGGGAGGAG+GGG + chr2_1:56363632-56363651 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 56359431 56366819 56359431 ID=Msa0213430;Name=Msa0213430
chr2_1 mRNA 56359431 56366819 56359431 ID=Msa0213430-mRNA-1;Parent=Msa0213430;Name=Msa0213430-mRNA-1;_AED=0.07;_eAED=0.07;_QI=390|1|1|1|0.91|0.84|13|435|757
chr2_1 exon 56359431 56360924 56359431 ID=Msa0213430-mRNA-1:exon:15689;Parent=Msa0213430-mRNA-1
chr2_1 exon 56362626 56362749 56362626 ID=Msa0213430-mRNA-1:exon:15688;Parent=Msa0213430-mRNA-1
chr2_1 exon 56363243 56363426 56363243 ID=Msa0213430-mRNA-1:exon:15687;Parent=Msa0213430-mRNA-1
chr2_1 exon 56363512 56363604 56363512 ID=Msa0213430-mRNA-1:exon:15686;Parent=Msa0213430-mRNA-1
chr2_1 exon 56363803 56363851 56363803 ID=Msa0213430-mRNA-1:exon:15685;Parent=Msa0213430-mRNA-1
chr2_1 exon 56364001 56364042 56364001 ID=Msa0213430-mRNA-1:exon:15684;Parent=Msa0213430-mRNA-1
chr2_1 exon 56364190 56364342 56364190 ID=Msa0213430-mRNA-1:exon:15683;Parent=Msa0213430-mRNA-1
chr2_1 exon 56364537 56364668 56364537 ID=Msa0213430-mRNA-1:exon:15682;Parent=Msa0213430-mRNA-1
chr2_1 exon 56364761 56364853 56364761 ID=Msa0213430-mRNA-1:exon:15681;Parent=Msa0213430-mRNA-1
chr2_1 exon 56365072 56365215 56365072 ID=Msa0213430-mRNA-1:exon:15680;Parent=Msa0213430-mRNA-1
chr2_1 exon 56365708 56365782 56365708 ID=Msa0213430-mRNA-1:exon:15679;Parent=Msa0213430-mRNA-1
chr2_1 exon 56366267 56366528 56366267 ID=Msa0213430-mRNA-1:exon:15678;Parent=Msa0213430-mRNA-1
chr2_1 exon 56366566 56366819 56366566 ID=Msa0213430-mRNA-1:exon:15677;Parent=Msa0213430-mRNA-1
chr2_1 five_prime_UTR 56366566 56366819 56366566 ID=Msa0213430-mRNA-1:five_prime_utr;Parent=Msa0213430-mRNA-1
chr2_1 five_prime_UTR 56366393 56366528 56366393 ID=Msa0213430-mRNA-1:five_prime_utr;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56366267 56366392 56366267 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56365708 56365782 56365708 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56365072 56365215 56365072 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56364761 56364853 56364761 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56364537 56364668 56364537 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56364190 56364342 56364190 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56364001 56364042 56364001 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56363803 56363851 56363803 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56363512 56363604 56363512 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56363243 56363426 56363243 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56362626 56362749 56362626 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 CDS 56359866 56360924 56359866 ID=Msa0213430-mRNA-1:cds;Parent=Msa0213430-mRNA-1
chr2_1 three_prime_UTR 56359431 56359865 56359431 ID=Msa0213430-mRNA-1:three_prime_utr;Parent=Msa0213430-mRNA-1
Gene Sequence

>Msa0213430

ATGGATATTACAGAAGTTTCAATCTTGCATCATGCTGGAATCGTTTTGATTTCTCTATGGTTGCTATCTACATTCGATCGTTGTCATGCTGCTTTTTATTTTGTGGCTTTGATCTATCTTTATCTGGTTCATGAACGTTATGTTACAAGGCTAAGGAAGAAGTTGCAGTTTGAAGAGAGAAAACAATCTAATCAAAGAAGGGTACTTTCTGATTCTGAAACAGTTCGGTGGTTGAACCATGCAGTTGAAAACATATGGCCTATATGTATGGAACAGATTGCATCTCAGAAGATTTTACTCCCTATCATACCATGGTTCTTAGAGAAGTACAAACCTTGGACTGCTAAAGAAGCTTCTGTTCAGCACCTATATTTGGGAAGAAACCCACCTTTGATTACTGATATCAGGGTACTTCGCCAGTGTGATGATGACCACTTGGTTCTTGAGTTAGGAATGAATTTTCTCACGGGTGATGATATGAGTGCAATACTTGCTGTGAAACTAAGAAAAAGATTGGGCTTTGGAATGTCAACAAAGCTGCATATAACGGGAATGCATGTTGAAGGGAAGGTCTTGGTAGGGGTGAAGTTCCTCAAGGAATGGCCTTTTCTTGGTCGTATACGTGTATGCTTTGTTGAGCCTCCATATTTTCAGATGACTGTCAAACCTATTTTTACACATGGGCTTGATGTGACAGAACTTCCAGGAATTGCTGGCTGGCTTGATAAGCTTCTGTCCATTGCTTTTGAACAGACCCTTGTTGAGCCCAATATGCTGGTTGTTGATGTTGAGAAATTTGTATCACCAGACCAAGAGCCTTGGTTTAACGTGGACGAGAAGGAACCTGTTGCTTATGCAAAAATCGAAATTGTTGAGGCAGCTGAAATGAAGCCATCAGATCTAAATGGATTAGCCGATCCTTATGTGAAAGGTCATTTGGGAGGATATAGATTCAGGACGAAGATACAAAAGAAAACACTTTCTCCAAAATGGCAAGAGGAATTCAGAATTCCCATCATAACATGGGATTGTAACAATGTTCTGGTTATTGAAGTTCGTGACAAGGACCATTTCTATGATGACATCCTTGGGGACTGTTCTGTGAACATCAATGATTTTAGGGACGGGCAAAAATATGATAAGTGGGTGCCACTACAGAAAGTAAAAATGGGGAGGTTGCACTTGCGAATAACAGTTCTTGATGATAAGGAAAAGGAAGCTGATACTACATGTGACCAAGAGACAATAGACATTGAAGAAAGAAAAGATTCTTTTGCAAATGAGACCACCAACAAAGGTTCCTTCTCATCCGTTTCATCTGGAAAATCTCCAAAATTGGCAGATAACTATGAGCCAATAAAAATTGAAGGCCAAGAGAAGACAGGTGTTTGGATACATCAGCCAGGAAGCGAAGTTCCCCAAATGTGGGAGCCAAGAAAAGGCAAGAATCGACGCCTCGACACAGAAATTCAGAGGGAACCTAACGATATATGTGGCTGTAATTCAACTGTATCTGGATCCTTGAACAATGACAGCAGCAGTCCCGATGATAATGCTGAAGATAAACATCGAATGAAAACTGTTAGGAAAGGCCTGCACAAAATCGGTTCTGTATTTCGTAGGAGTCGGAAAATGGACGATAATTCAGGTCCTATTGCGCAGGACTTTCCATCTCCACGTGATAACATTAGGTCAGTAAATGCTTCTAAAGGGGTTGGCGTGAAGTTTGTTATGGATGATAACACTGCTGGCTTTCCGACTGGTAAGATTCAGGTAGAAGGTGGATCAACGGAAGGGAGTGGTCCTGATAGCCCGGCAAAGAGAGACGTCAAGGACATGGCAAAGAATATTTTAAAAAATGCGGAAAAATCAGCTCGCAGCTTAAAACATGTTCTTTCTCGTAAATCAAGGAAATCAAAAGGTGATTCAGCTGAAACATTTCGTGAAAGAGAAAATGAATCTGACTCATCTAGTGATGAATCTCTTTCAGTTCAGTCCCCAAAAGATGCAAGAACTAAAGTTGTTTCACAGGCCATTGCTCAAGGTAACATTGGTTCCCCCAAATCCGATGTTAATGAGGTTCACAATGTTCGTTCCCCCAAATCCGATGTGAATGTGGTTCACAATGTGCCATCCAACACCACTGTGGTCAACAAGGAGCCTCAAAAGGCATTCTCCCCTGAAAGGTCTAATGAAAAAATTGTTATGTCTGGCGAACATGATAAAGAAGAAATGGTGGCAGATAAAAGGGTTTTCAGCAGTATAGCAGAGTGA

Protein sequence

>Msa0213430

MDITEVSILHHAGIVLISLWLLSTFDRCHAAFYFVALIYLYLVHERYVTRLRKKLQFEERKQSNQRRVLSDSETVRWLNHAVENIWPICMEQIASQKILLPIIPWFLEKYKPWTAKEASVQHLYLGRNPPLITDIRVLRQCDDDHLVLELGMNFLTGDDMSAILAVKLRKRLGFGMSTKLHITGMHVEGKVLVGVKFLKEWPFLGRIRVCFVEPPYFQMTVKPIFTHGLDVTELPGIAGWLDKLLSIAFEQTLVEPNMLVVDVEKFVSPDQEPWFNVDEKEPVAYAKIEIVEAAEMKPSDLNGLADPYVKGHLGGYRFRTKIQKKTLSPKWQEEFRIPIITWDCNNVLVIEVRDKDHFYDDILGDCSVNINDFRDGQKYDKWVPLQKVKMGRLHLRITVLDDKEKEADTTCDQETIDIEERKDSFANETTNKGSFSSVSSGKSPKLADNYEPIKIEGQEKTGVWIHQPGSEVPQMWEPRKGKNRRLDTEIQREPNDICGCNSTVSGSLNNDSSSPDDNAEDKHRMKTVRKGLHKIGSVFRRSRKMDDNSGPIAQDFPSPRDNIRSVNASKGVGVKFVMDDNTAGFPTGKIQVEGGSTEGSGPDSPAKRDVKDMAKNILKNAEKSARSLKHVLSRKSRKSKGDSAETFRERENESDSSSDESLSVQSPKDARTKVVSQAIAQGNIGSPKSDVNEVHNVRSPKSDVNVVHNVPSNTTVVNKEPQKAFSPERSNEKIVMSGEHDKEEMVADKRVFSSIAE*