Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031580 | sp|Q9ZVQ6|P2B10_ARATH | 41.538 | 260 | 114 | 8 | 7 | 236 | 17 | 268 | 2.58e-58 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031580 | Msa0034100 | -0.803501 | 3.382240e-49 | -8.615850e-47 |
| Msa0031580 | Msa0036550 | 0.810469 | 1.134874e-50 | -8.615850e-47 |
| Msa0031580 | Msa0078990 | 0.958284 | 3.447311e-116 | -8.615850e-47 |
| Msa0031580 | Msa0127060 | -0.801013 | 1.100245e-48 | -8.615850e-47 |
| Msa0031580 | Msa0139850 | 0.807177 | 5.742434e-50 | -8.615850e-47 |
| Msa0031580 | Msa0165820 | -0.810780 | 9.724333e-51 | -8.615850e-47 |
| Msa0031580 | Msa0171510 | 0.943645 | 8.274055e-103 | -8.615850e-47 |
| Msa0031580 | Msa0208710 | -0.808507 | 2.994545e-50 | -8.615850e-47 |
| Msa0031580 | Msa0343230 | -0.805072 | 1.592393e-49 | -8.615850e-47 |
| Msa0031580 | Msa0389570 | -0.800557 | 1.362664e-48 | -8.615850e-47 |
| Msa0031580 | Msa0422230 | -0.806480 | 8.057913e-50 | -8.615850e-47 |
| Msa0031580 | Msa0424300 | 0.806168 | 9.378056e-50 | -8.615850e-47 |
| Msa0031580 | Msa0471210 | 0.805971 | 1.031569e-49 | -8.615850e-47 |
| Msa0031580 | Msa0515930 | 0.809906 | 1.501020e-50 | -8.615850e-47 |
| Msa0031580 | Msa0528830 | -0.804545 | 2.051792e-49 | -8.615850e-47 |
| Msa0031580 | Msa0582270 | -0.803126 | 4.044148e-49 | -8.615850e-47 |
| Msa0031580 | Msa0585720 | -0.800511 | 1.392826e-48 | -8.615850e-47 |
| Msa0031580 | Msa0610300 | -0.801691 | 7.990841e-49 | -8.615850e-47 |
| Msa0031580 | Msa0625900 | -0.804332 | 2.272716e-49 | -8.615850e-47 |
| Msa0031580 | Msa0634900 | -0.801644 | 8.168872e-49 | -8.615850e-47 |
| Msa0031580 | Msa0663690 | -0.801773 | 7.687317e-49 | -8.615850e-47 |
| Msa0031580 | Msa0967900 | -0.800580 | 1.348065e-48 | -8.615850e-47 |
| Msa0031580 | Msa1143060 | -0.804923 | 1.710647e-49 | -8.615850e-47 |
| Msa0031580 | Msa1346220 | -0.810241 | 1.270979e-50 | -8.615850e-47 |
| Msa0031580 | Msa1346340 | -0.808498 | 3.007562e-50 | -8.615850e-47 |
| Msa0031580 | Msa1361580 | -0.800736 | 1.252781e-48 | -8.615850e-47 |
| Msa0031580 | Msa1395720 | 0.818119 | 2.314632e-52 | -8.615850e-47 |
| Msa0031580 | Msa1412740 | -0.803508 | 3.372077e-49 | -8.615850e-47 |
| Msa0031580 | Msa1425400 | 0.970077 | 4.520613e-131 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031580 | MtrunA17_Chr1g0189751 | 78.439 | 269 | 26 | 2 | 1 | 239 | 1 | 267 | 3.95e-136 | 384 |
| Msa0031580 | MtrunA17_Chr1g0189721 | 72.659 | 267 | 41 | 2 | 1 | 237 | 1 | 265 | 3.46e-134 | 378 |
| Msa0031580 | MtrunA17_Chr1g0189611 | 64.444 | 270 | 58 | 4 | 1 | 237 | 1 | 265 | 2.19e-118 | 338 |
| Msa0031580 | MtrunA17_Chr1g0189671 | 58.123 | 277 | 77 | 4 | 1 | 240 | 1 | 275 | 1.02e-106 | 309 |
| Msa0031580 | MtrunA17_Chr1g0189821 | 60.073 | 273 | 72 | 4 | 1 | 240 | 1 | 269 | 9.68e-106 | 306 |
| Msa0031580 | MtrunA17_Chr1g0189621 | 60.223 | 269 | 70 | 5 | 1 | 237 | 1 | 264 | 1.25e-105 | 306 |
| Msa0031580 | MtrunA17_Chr1g0203281 | 58.993 | 278 | 73 | 4 | 1 | 240 | 1 | 275 | 5.79e-105 | 305 |
| Msa0031580 | MtrunA17_Chr1g0189641 | 53.791 | 277 | 90 | 3 | 1 | 240 | 1 | 276 | 3.26e-95 | 280 |
| Msa0031580 | MtrunA17_Chr1g0190071 | 53.497 | 286 | 85 | 5 | 1 | 240 | 1 | 284 | 1.33e-91 | 271 |
| Msa0031580 | MtrunA17_Chr1g0203331 | 58.367 | 245 | 60 | 3 | 15 | 218 | 1 | 244 | 7.97e-89 | 262 |
| Msa0031580 | MtrunA17_Chr3g0097191 | 54.815 | 270 | 80 | 7 | 4 | 240 | 10 | 270 | 1.41e-86 | 258 |
| Msa0031580 | MtrunA17_Chr1g0189661 | 52.128 | 282 | 92 | 6 | 1 | 240 | 1 | 281 | 1.43e-85 | 256 |
| Msa0031580 | MtrunA17_Chr1g0157451 | 49.129 | 287 | 98 | 6 | 1 | 240 | 1 | 286 | 2.22e-82 | 248 |
| Msa0031580 | MtrunA17_Chr3g0078331 | 48.525 | 305 | 86 | 6 | 4 | 240 | 17 | 318 | 4.18e-80 | 243 |
| Msa0031580 | MtrunA17_Chr1g0189711 | 50.181 | 277 | 96 | 7 | 1 | 237 | 1 | 275 | 7.59e-78 | 236 |
| Msa0031580 | MtrunA17_Chr1g0189781 | 48.519 | 270 | 99 | 5 | 4 | 237 | 8 | 273 | 9.87e-78 | 235 |
| Msa0031580 | MtrunA17_Chr1g0189541 | 62.304 | 191 | 62 | 4 | 47 | 237 | 4 | 184 | 1.99e-76 | 229 |
| Msa0031580 | MtrunA17_Chr7g0260801 | 50.000 | 270 | 94 | 8 | 1 | 237 | 13 | 274 | 8.24e-74 | 225 |
| Msa0031580 | MtrunA17_Chr3g0095261 | 49.301 | 286 | 87 | 10 | 4 | 240 | 10 | 286 | 6.48e-72 | 221 |
| Msa0031580 | MtrunA17_Chr1g0189591 | 43.624 | 298 | 102 | 7 | 3 | 237 | 12 | 306 | 4.36e-70 | 217 |
| Msa0031580 | MtrunA17_Chr1g0189701 | 47.260 | 292 | 93 | 9 | 1 | 237 | 32 | 317 | 4.53e-67 | 209 |
| Msa0031580 | MtrunA17_Chr2g0317291 | 57.143 | 161 | 67 | 1 | 74 | 234 | 54 | 212 | 4.49e-51 | 166 |
| Msa0031580 | MtrunA17_Chr1g0188311 | 61.194 | 134 | 36 | 1 | 98 | 215 | 22 | 155 | 1.11e-49 | 160 |
| Msa0031580 | MtrunA17_Chr1g0189651 | 56.707 | 164 | 58 | 4 | 74 | 237 | 29 | 179 | 1.05e-48 | 158 |
| Msa0031580 | MtrunA17_Chr7g0272091 | 36.972 | 284 | 128 | 8 | 2 | 238 | 5 | 284 | 3.24e-48 | 160 |
| Msa0031580 | MtrunA17_Chr1g0189571 | 43.128 | 211 | 85 | 6 | 56 | 237 | 1 | 205 | 1.23e-43 | 146 |
| Msa0031580 | MtrunA17_Chr1g0192371 | 34.643 | 280 | 135 | 9 | 2 | 237 | 6 | 281 | 6.62e-42 | 144 |
| Msa0031580 | MtrunA17_Chr7g0272101 | 33.969 | 262 | 134 | 7 | 7 | 237 | 4 | 257 | 8.23e-39 | 135 |
| Msa0031580 | MtrunA17_Chr1g0189771 | 45.399 | 163 | 55 | 2 | 4 | 132 | 12 | 174 | 7.56e-38 | 130 |
| Msa0031580 | MtrunA17_Chr3g0102081 | 59.091 | 110 | 43 | 1 | 90 | 199 | 16 | 123 | 2.23e-36 | 125 |
| Msa0031580 | MtrunA17_Chr4g0010881 | 31.179 | 263 | 120 | 8 | 7 | 237 | 4 | 237 | 2.13e-32 | 118 |
| Msa0031580 | MtrunA17_Chr1g0189631 | 55.963 | 109 | 32 | 2 | 115 | 209 | 1 | 107 | 5.10e-32 | 113 |
| Msa0031580 | MtrunA17_Chr1g0189531 | 72.000 | 75 | 21 | 0 | 1 | 75 | 64 | 138 | 4.65e-29 | 109 |
| Msa0031580 | MtrunA17_Chr3g0143881 | 44.715 | 123 | 52 | 2 | 115 | 237 | 1 | 107 | 3.45e-27 | 100 |
| Msa0031580 | MtrunA17_Chr2g0300961 | 61.538 | 78 | 28 | 2 | 1 | 76 | 1 | 78 | 1.92e-22 | 89.4 |
| Msa0031580 | MtrunA17_Chr7g0260811 | 41.892 | 148 | 52 | 5 | 38 | 155 | 19 | 162 | 1.58e-18 | 80.1 |
| Msa0031580 | MtrunA17_Chr1g0189761 | 49.462 | 93 | 44 | 2 | 145 | 237 | 5 | 94 | 3.54e-16 | 71.6 |
| Msa0031580 | MtrunA17_Chr4g0043591 | 27.811 | 169 | 99 | 5 | 71 | 237 | 143 | 290 | 2.30e-15 | 73.6 |
| Msa0031580 | MtrunA17_Chr5g0397981 | 29.586 | 169 | 86 | 5 | 2 | 139 | 33 | 199 | 8.62e-14 | 69.3 |
| Msa0031580 | MtrunA17_Chr1g0203751 | 30.872 | 149 | 72 | 2 | 2 | 119 | 26 | 174 | 8.41e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031580 | AT2G02360.1 | 41.538 | 260 | 114 | 8 | 7 | 236 | 17 | 268 | 2.62e-59 | 189 |
| Msa0031580 | AT2G02340.1 | 36.296 | 270 | 137 | 4 | 1 | 236 | 33 | 301 | 1.37e-53 | 175 |
| Msa0031580 | AT1G80110.1 | 38.636 | 264 | 122 | 7 | 4 | 236 | 1 | 255 | 5.76e-50 | 164 |
| Msa0031580 | AT2G02240.1 | 37.023 | 262 | 124 | 7 | 7 | 236 | 64 | 316 | 2.88e-48 | 162 |
| Msa0031580 | AT2G02250.1 | 36.090 | 266 | 128 | 7 | 4 | 236 | 47 | 303 | 4.18e-47 | 158 |
| Msa0031580 | AT1G09155.1 | 37.500 | 280 | 124 | 8 | 7 | 237 | 3 | 280 | 7.62e-47 | 157 |
| Msa0031580 | AT2G02350.2 | 35.206 | 267 | 131 | 8 | 4 | 236 | 24 | 282 | 1.90e-42 | 146 |
| Msa0031580 | AT1G56250.1 | 36.786 | 280 | 126 | 8 | 7 | 237 | 4 | 281 | 5.09e-42 | 144 |
| Msa0031580 | AT1G56240.1 | 36.201 | 279 | 127 | 8 | 7 | 236 | 4 | 280 | 1.34e-41 | 143 |
| Msa0031580 | AT2G02230.1 | 30.164 | 305 | 139 | 6 | 7 | 240 | 35 | 336 | 1.23e-40 | 142 |
| Msa0031580 | AT2G02320.1 | 33.962 | 265 | 133 | 9 | 6 | 236 | 42 | 298 | 8.75e-38 | 134 |
| Msa0031580 | AT2G02310.1 | 29.104 | 268 | 148 | 7 | 4 | 237 | 45 | 304 | 1.61e-32 | 120 |
| Msa0031580 | AT2G02300.1 | 31.734 | 271 | 125 | 7 | 4 | 237 | 34 | 281 | 5.39e-32 | 118 |
| Msa0031580 | AT2G02350.1 | 36.913 | 149 | 86 | 4 | 91 | 236 | 22 | 165 | 5.39e-26 | 100 |
| Msa0031580 | AT5G24560.1 | 29.915 | 234 | 116 | 7 | 6 | 237 | 5 | 192 | 4.48e-25 | 98.2 |
| Msa0031580 | AT3G53000.1 | 25.632 | 277 | 149 | 11 | 4 | 236 | 21 | 284 | 4.55e-16 | 76.3 |
| Msa0031580 | AT1G12710.1 | 32.639 | 144 | 63 | 3 | 6 | 117 | 30 | 171 | 1.29e-13 | 69.3 |
| Msa0031580 | AT1G63090.1 | 29.268 | 164 | 80 | 4 | 4 | 135 | 26 | 185 | 5.84e-13 | 67.4 |
| Msa0031580 | AT3G61060.2 | 26.994 | 163 | 83 | 4 | 6 | 135 | 27 | 186 | 8.10e-13 | 67.0 |
| Msa0031580 | AT3G61060.1 | 28.834 | 163 | 79 | 5 | 6 | 135 | 27 | 185 | 1.01e-12 | 66.6 |
| Msa0031580 | AT4G19850.3 | 26.816 | 179 | 101 | 7 | 68 | 237 | 61 | 218 | 8.98e-12 | 63.2 |
| Msa0031580 | AT4G19850.1 | 26.816 | 179 | 101 | 7 | 68 | 237 | 19 | 176 | 9.94e-12 | 62.0 |
| Msa0031580 | AT1G33920.1 | 24.022 | 179 | 109 | 4 | 65 | 237 | 7 | 164 | 1.80e-11 | 61.2 |
| Msa0031580 | AT4G19840.1 | 28.824 | 170 | 98 | 8 | 71 | 237 | 96 | 245 | 3.06e-11 | 62.0 |
Find 80 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTGCATATTGAGTATT+TGG | 0.137691 | 1_1:+58324351 | None:intergenic |
| CTTATTGTTGTTCAGTATAC+TGG | 0.163118 | 1_1:-58323860 | Msa0031580:three_prime_UTR |
| TTCAAAATGATTGATGCTTA+TGG | 0.231867 | 1_1:-58324321 | Msa0031580:CDS |
| CTAGATCTCTTGCCATTGTT+TGG | 0.245415 | 1_1:-58326896 | Msa0031580:intron |
| TAGATCTCTTGCCATTGTTT+GGG | 0.268063 | 1_1:-58326895 | Msa0031580:CDS |
| CTGAACTATGCAAGGGGTCT+TGG | 0.296858 | 1_1:-58323984 | Msa0031580:three_prime_UTR |
| TCAACAAGCTTAGCGACTTC+AGG | 0.333696 | 1_1:+58324423 | None:intergenic |
| AAGCTGCATATTGAGTATTT+GGG | 0.334659 | 1_1:+58324352 | None:intergenic |
| TGCCAACATTCCTACCAAAA+AGG | 0.349990 | 1_1:-58327886 | Msa0031580:CDS |
| TGATTTCTATGCCTGATTCC+AGG | 0.379925 | 1_1:-58326848 | Msa0031580:intron |
| TGAGGATTACCTTCCACATT+TGG | 0.380026 | 1_1:+58324222 | None:intergenic |
| ATATTAGTATGTTGAAAAGT+TGG | 0.382553 | 1_1:+58323931 | None:intergenic |
| GAGAGTCTGCCGGCGTCAAC+TGG | 0.384737 | 1_1:+58328011 | None:intergenic |
| CCTCCAACTCCGACGCTGTA+TGG | 0.389215 | 1_1:-58327962 | Msa0031580:CDS |
| TGAACTATGCAAGGGGTCTT+GGG | 0.402498 | 1_1:-58323983 | Msa0031580:three_prime_UTR |
| TTAAGAGCTAACCTGGAATC+AGG | 0.410946 | 1_1:+58326837 | None:intergenic |
| TGGATATCTTTGTTGTGTTG+TGG | 0.414878 | 1_1:-58323835 | Msa0031580:three_prime_UTR |
| GACAGAGATTCAGGATTTGC+CGG | 0.423087 | 1_1:-58328069 | Msa0031580:CDS |
| TAGTACTAAAATTGTCTGTT+TGG | 0.434481 | 1_1:-58324247 | Msa0031580:CDS |
| CTAAGCTTGTTGATGTGTGT+TGG | 0.438622 | 1_1:-58324413 | Msa0031580:CDS |
| TGGAGTTGTACGAGAGACTA+TGG | 0.443442 | 1_1:+58328031 | None:intergenic |
| ATCACAATATATTATATAGT+TGG | 0.445877 | 1_1:+58323782 | None:intergenic |
| GTGTGTTGGCTTGAAATTCA+TGG | 0.446205 | 1_1:-58324399 | Msa0031580:CDS |
| ATGCAAGGGGTCTTGGGTCG+TGG | 0.466084 | 1_1:-58323977 | Msa0031580:three_prime_UTR |
| GTTGGTTAATTGTTATACTT+AGG | 0.467370 | 1_1:+58324012 | None:intergenic |
| CCATACAGCGTCGGAGTTGG+AGG | 0.469088 | 1_1:+58327962 | None:intergenic |
| TCATCTGTATCAGATTCATC+TGG | 0.472901 | 1_1:+58324091 | None:intergenic |
| CAGCCGCACAACACAGTAGT+AGG | 0.476209 | 1_1:-58324201 | Msa0031580:CDS |
| ATTCCATACAGCGTCGGAGT+TGG | 0.478886 | 1_1:+58327959 | None:intergenic |
| CAACAAGCTTAGCGACTTCA+GGG | 0.483357 | 1_1:+58324424 | None:intergenic |
| AAGAGAGGTCTCGTTGTTGA+AGG | 0.488523 | 1_1:-58324048 | Msa0031580:CDS |
| ATGGTGGCAATGCATCCTTC+CGG | 0.489320 | 1_1:+58328050 | None:intergenic |
| TGTTCTGCGGATTTATCAGT+TGG | 0.493868 | 1_1:-58324288 | Msa0031580:CDS |
| CATATTGAGTATTTGGGGAC+AGG | 0.495017 | 1_1:+58324358 | None:intergenic |
| TGGGTGGTTGGAGATTGAGA+TGG | 0.496484 | 1_1:-58324151 | Msa0031580:CDS |
| TTGTTGAAGGAATTGAAGTC+AGG | 0.499615 | 1_1:-58324035 | Msa0031580:CDS |
| TGGAACAATCAACAGACATC+AGG | 0.499719 | 1_1:+58323802 | None:intergenic |
| CGTCCTACTGTGAGAAGCGA+TGG | 0.500006 | 1_1:-58324171 | Msa0031580:CDS |
| ACTACTGTGTTGTGCGGCTG+AGG | 0.503355 | 1_1:+58324204 | None:intergenic |
| ATGGGTGAGTTCTTCAATCC+AGG | 0.510010 | 1_1:-58324132 | Msa0031580:CDS |
| GTAGGAATGTTGGCAAGGGA+AGG | 0.521816 | 1_1:+58327894 | None:intergenic |
| TTATTGTTGTTCAGTATACT+GGG | 0.530310 | 1_1:-58323859 | Msa0031580:three_prime_UTR |
| GGGGTGATGATAGACGCTAT+TGG | 0.532370 | 1_1:-58326875 | Msa0031580:CDS |
| GGGTGGTTGGAGATTGAGAT+GGG | 0.533715 | 1_1:-58324150 | Msa0031580:CDS |
| AACATTCACTGAACTATGCA+AGG | 0.541083 | 1_1:-58323992 | Msa0031580:three_prime_UTR |
| TGAGTGGTGGTCGTGGTGGT+TGG | 0.545093 | 1_1:-58324071 | Msa0031580:CDS |
| TTGCATAGTTCAGTGAATGT+TGG | 0.553784 | 1_1:+58323994 | None:intergenic |
| TGTTGTTCAGTATACTGGGA+TGG | 0.556183 | 1_1:-58323855 | Msa0031580:three_prime_UTR |
| CGTCGGAGTTGGAGGCTGAT+CGG | 0.556747 | 1_1:+58327970 | None:intergenic |
| GAGATTCAGGATTTGCCGGA+AGG | 0.560627 | 1_1:-58328065 | Msa0031580:CDS |
| AGATCTCTTGCCATTGTTTG+GGG | 0.561132 | 1_1:-58326894 | Msa0031580:CDS |
| GGTCGTGGTGGTTGGAAGAG+AGG | 0.562312 | 1_1:-58324063 | Msa0031580:CDS |
| GATTTATCAGTTGGTGTCGA+AGG | 0.564414 | 1_1:-58324279 | Msa0031580:CDS |
| TGTGAGAAGCGATGGGTGGT+TGG | 0.573841 | 1_1:-58324163 | Msa0031580:CDS |
| GGAAACGACGGAGAGTCTGC+CGG | 0.576478 | 1_1:+58328001 | None:intergenic |
| ATGATAGATGAGATGTCAGA+AGG | 0.589136 | 1_1:+58327927 | None:intergenic |
| GGAGGCTGATCGGAAAGTGT+TGG | 0.593620 | 1_1:+58327980 | None:intergenic |
| TTATCAGTTGGTGTCGAAGG+TGG | 0.596520 | 1_1:-58324276 | Msa0031580:CDS |
| AGCTGCATATTGAGTATTTG+GGG | 0.601395 | 1_1:+58324353 | None:intergenic |
| ACATTCACTGAACTATGCAA+GGG | 0.606445 | 1_1:-58323991 | Msa0031580:three_prime_UTR |
| TTTGGTAGGAATGTTGGCAA+GGG | 0.607331 | 1_1:+58327890 | None:intergenic |
| ATACAGATGAGTGGTGGTCG+TGG | 0.619250 | 1_1:-58324078 | Msa0031580:CDS |
| TGGATTTCAGAACTGTTCTG+CGG | 0.620211 | 1_1:-58324301 | Msa0031580:CDS |
| TGTCTGTTTGGATCCAAATG+TGG | 0.625217 | 1_1:-58324235 | Msa0031580:CDS |
| TCTATCATCACCCCAAACAA+TGG | 0.627087 | 1_1:+58326884 | None:intergenic |
| AATCAACAGACATCAGGAAG+AGG | 0.628326 | 1_1:+58323808 | None:intergenic |
| AGTATTTGGGGACAGGACGA+TGG | 0.644084 | 1_1:+58324365 | None:intergenic |
| GTCCTACTGTGAGAAGCGAT+GGG | 0.647735 | 1_1:-58324170 | Msa0031580:CDS |
| CACCCATCGCTTCTCACAGT+AGG | 0.650219 | 1_1:+58324168 | None:intergenic |
| CAGATGAGTGGTGGTCGTGG+TGG | 0.655384 | 1_1:-58324075 | Msa0031580:CDS |
| TCGGAAAGTGTTGGAAACGA+CGG | 0.666718 | 1_1:+58327989 | None:intergenic |
| CATTCACTGAACTATGCAAG+GGG | 0.671001 | 1_1:-58323990 | Msa0031580:three_prime_UTR |
| AATCCTACTACTGTGTTGTG+CGG | 0.681890 | 1_1:+58324198 | None:intergenic |
| AAAACGATTCCATACAGCGT+CGG | 0.682477 | 1_1:+58327953 | None:intergenic |
| TGTTTGGATCCAAATGTGGA+AGG | 0.696224 | 1_1:-58324231 | Msa0031580:CDS |
| CTACTGTGAGAAGCGATGGG+TGG | 0.696678 | 1_1:-58324167 | Msa0031580:CDS |
| CGTACAACTCCAGTTGACGC+CGG | 0.721519 | 1_1:-58328020 | Msa0031580:CDS |
| ATGAATCTGATACAGATGAG+TGG | 0.742711 | 1_1:-58324087 | Msa0031580:CDS |
| AATCTGATACAGATGAGTGG+TGG | 0.745247 | 1_1:-58324084 | Msa0031580:CDS |
| AGTTGTACGAGAGACTATGG+TGG | 0.755358 | 1_1:+58328034 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGAGAAAAATAAAAAA+TGG | + | chr1_1:58325434-58325453 | None:intergenic | 10.0% |
| !!! | ATTTTGAGAAAAATAAAAAT+TGG | + | chr1_1:58326247-58326266 | None:intergenic | 10.0% |
| !!! | TGACAAATATATTTTTAAAG+GGG | + | chr1_1:58324748-58324767 | None:intergenic | 15.0% |
| !!! | GTGACAAATATATTTTTAAA+GGG | + | chr1_1:58324749-58324768 | None:intergenic | 15.0% |
| !!! | TATTTTTAAAGATACTTCAA+CGG | - | chr1_1:58325365-58325384 | Msa0031580:intron | 15.0% |
| !! | AATAATAATAAATGTTGCAT+TGG | + | chr1_1:58325475-58325494 | None:intergenic | 15.0% |
| !! | CAATAATAAGTGTATAATAA+TGG | + | chr1_1:58325500-58325519 | None:intergenic | 15.0% |
| !!! | TATTTTTAAAGATACTTCAA+CGG | - | chr1_1:58325365-58325384 | Msa0031580:intron | 15.0% |
| !! | AATAATAATAAATGTTGCAT+TGG | + | chr1_1:58325475-58325494 | None:intergenic | 15.0% |
| !! | CAATAATAAGTGTATAATAA+TGG | + | chr1_1:58325500-58325519 | None:intergenic | 15.0% |
| !!! | ATTAATTTTAACTTGAACAA+AGG | + | chr1_1:58327151-58327170 | None:intergenic | 15.0% |
| !! | ATCACAATATATTATATAGT+TGG | + | chr1_1:58328041-58328060 | None:intergenic | 15.0% |
| !!! | GATTTTTTAAGATGTTTAGT+TGG | - | chr1_1:58324045-58324064 | Msa0031580:CDS | 20.0% |
| !! | AACACCAAATATGAAATATT+TGG | - | chr1_1:58324072-58324091 | Msa0031580:CDS | 20.0% |
| !! | TCAACCAAATATTTCATATT+TGG | + | chr1_1:58324079-58324098 | None:intergenic | 20.0% |
| !! | TCAGTTTGTAATAATAACAA+TGG | - | chr1_1:58324408-58324427 | Msa0031580:CDS | 20.0% |
| !! | CAGTTTGTAATAATAACAAT+GGG | - | chr1_1:58324409-58324428 | Msa0031580:CDS | 20.0% |
| !!! | GACAAATATATTTTTAAAGG+GGG | + | chr1_1:58324747-58324766 | None:intergenic | 20.0% |
| !!! | GGTGACAAATATATTTTTAA+AGG | + | chr1_1:58324750-58324769 | None:intergenic | 20.0% |
| !! | GATTAACTCATAATTAATAC+TGG | - | chr1_1:58325030-58325049 | Msa0031580:intron | 20.0% |
| !!! | TTTTTCAATTAAGATCACAT+GGG | + | chr1_1:58325303-58325322 | None:intergenic | 20.0% |
| !!! | TTTTTTCAATTAAGATCACA+TGG | + | chr1_1:58325304-58325323 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAGATACTTCAAC+GGG | - | chr1_1:58325366-58325385 | Msa0031580:intron | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | + | chr1_1:58325593-58325612 | None:intergenic | 20.0% |
| !! | GATTAACTCATAATTAATAC+TGG | - | chr1_1:58325030-58325049 | Msa0031580:intron | 20.0% |
| !!! | TTTTTCAATTAAGATCACAT+GGG | + | chr1_1:58325303-58325322 | None:intergenic | 20.0% |
| !!! | TTTTTTCAATTAAGATCACA+TGG | + | chr1_1:58325304-58325323 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAGATACTTCAAC+GGG | - | chr1_1:58325366-58325385 | Msa0031580:intron | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | + | chr1_1:58325593-58325612 | None:intergenic | 20.0% |
| !! | CATTCAAAAATAAATAGGTT+CGG | + | chr1_1:58326991-58327010 | None:intergenic | 20.0% |
| !! | TGATGCATTCAAAAATAAAT+AGG | + | chr1_1:58326996-58327015 | None:intergenic | 20.0% |
| !! | GGTCTGATATTTAAAAAATT+TGG | + | chr1_1:58327024-58327043 | None:intergenic | 20.0% |
| !! | TTGTAAAGTAACAAACAAAT+TGG | + | chr1_1:58327045-58327064 | None:intergenic | 20.0% |
| !! | ATATTAGTATGTTGAAAAGT+TGG | + | chr1_1:58327892-58327911 | None:intergenic | 20.0% |
| !!! | TATTTTACAAAGAAAGAGAT+TGG | + | chr1_1:58327922-58327941 | None:intergenic | 20.0% |
| ! | AAATAATTCGAAGTTGCAAT+TGG | - | chr1_1:58324220-58324239 | Msa0031580:CDS | 25.0% |
| ! | TTGTAATAATAACAATGGGT+TGG | - | chr1_1:58324413-58324432 | Msa0031580:CDS | 25.0% |
| ! | TTAAATTGCAGGAATGTAAA+GGG | + | chr1_1:58324523-58324542 | None:intergenic | 25.0% |
| ! | ATTAAATTGCAGGAATGTAA+AGG | + | chr1_1:58324524-58324543 | None:intergenic | 25.0% |
| ! | GAACATTGATATTAAATTGC+AGG | + | chr1_1:58324534-58324553 | None:intergenic | 25.0% |
| ! | AGATGAAAAGGAAAAGAAAA+AGG | + | chr1_1:58324569-58324588 | None:intergenic | 25.0% |
| !!! | AACTTGTTATTACAAGATGT+TGG | - | chr1_1:58324651-58324670 | Msa0031580:intron | 25.0% |
| ! | GAGTTTACATTACCAAAAAT+CGG | - | chr1_1:58324823-58324842 | Msa0031580:intron | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr1_1:58325541-58325560 | Msa0031580:intron | 25.0% |
| ! | ACCTTATTAATTGTAGTTAG+TGG | + | chr1_1:58325545-58325564 | None:intergenic | 25.0% |
| ! | AAACGAGTATTATTTAGAGA+AGG | - | chr1_1:58325642-58325661 | Msa0031580:intron | 25.0% |
| ! | TATAAAAAAGGACATAACTG+TGG | + | chr1_1:58325719-58325738 | None:intergenic | 25.0% |
| !!! | ACAGTTATGTCCTTTTTTAT+AGG | - | chr1_1:58325718-58325737 | Msa0031580:intron | 25.0% |
| ! | ATCATTCAAGCCTATAAAAA+AGG | + | chr1_1:58325731-58325750 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr1_1:58325541-58325560 | Msa0031580:intron | 25.0% |
| ! | ACCTTATTAATTGTAGTTAG+TGG | + | chr1_1:58325545-58325564 | None:intergenic | 25.0% |
| ! | AAACGAGTATTATTTAGAGA+AGG | - | chr1_1:58325642-58325661 | Msa0031580:intron | 25.0% |
| ! | TATAAAAAAGGACATAACTG+TGG | + | chr1_1:58325719-58325738 | None:intergenic | 25.0% |
| !!! | ACAGTTATGTCCTTTTTTAT+AGG | - | chr1_1:58325718-58325737 | Msa0031580:intron | 25.0% |
| ! | ATCATTCAAGCCTATAAAAA+AGG | + | chr1_1:58325731-58325750 | None:intergenic | 25.0% |
| !!! | TTTTTTGATCCTAATTGTTG+CGG | - | chr1_1:58326962-58326981 | Msa0031580:intron | 25.0% |
| !!! | TTTTAACTTGAACAAAGGAA+TGG | + | chr1_1:58327146-58327165 | None:intergenic | 25.0% |
| ! | GTACTCGACAAATAAAATAA+TGG | + | chr1_1:58327205-58327224 | None:intergenic | 25.0% |
| ! | TGCAAAGATTAGAAGATAAT+GGG | + | chr1_1:58327348-58327367 | None:intergenic | 25.0% |
| ! | ATGCAAAGATTAGAAGATAA+TGG | + | chr1_1:58327349-58327368 | None:intergenic | 25.0% |
| ! | TTCAAAATGATTGATGCTTA+TGG | - | chr1_1:58327499-58327518 | Msa0031580:intron | 25.0% |
| ! | TAGTACTAAAATTGTCTGTT+TGG | - | chr1_1:58327573-58327592 | Msa0031580:intron | 25.0% |
| ! | GTTGGTTAATTGTTATACTT+AGG | + | chr1_1:58327811-58327830 | None:intergenic | 25.0% |
| !! | TTATTGTTGTTCAGTATACT+GGG | - | chr1_1:58327961-58327980 | Msa0031580:CDS | 25.0% |
| CATCATCGATCATGATAAAA+AGG | - | chr1_1:58323988-58324007 | Msa0031580:three_prime_UTR | 30.0% | |
| TCATTTCAACAATAAGCCTT+AGG | + | chr1_1:58324027-58324046 | None:intergenic | 30.0% | |
| ! | TCATGATTATGTTTTCGACA+AGG | - | chr1_1:58324101-58324120 | Msa0031580:CDS | 30.0% |
| ! | GAATTATTTCTCCTTGTCTT+TGG | + | chr1_1:58324209-58324228 | None:intergenic | 30.0% |
| ! | AAGTTATTTCCTAGTGTCTT+AGG | - | chr1_1:58324307-58324326 | Msa0031580:CDS | 30.0% |
| CTATAATTTCCTAAGACACT+AGG | + | chr1_1:58324319-58324338 | None:intergenic | 30.0% | |
| CTAGTGTCTTAGGAAATTAT+AGG | - | chr1_1:58324317-58324336 | Msa0031580:CDS | 30.0% | |
| !! | CTACTTTTAATATAGACCGT+AGG | - | chr1_1:58324349-58324368 | Msa0031580:CDS | 30.0% |
| AAAACTACCACTAAATCCTA+CGG | + | chr1_1:58324368-58324387 | None:intergenic | 30.0% | |
| AGAAGAAAGAGAAGATGAAA+AGG | + | chr1_1:58324581-58324600 | None:intergenic | 30.0% | |
| TGTAATAACAAGTTGTCTCA+TGG | + | chr1_1:58324645-58324664 | None:intergenic | 30.0% | |
| TTTATGTCCTAAACCATTGA+TGG | - | chr1_1:58324781-58324800 | Msa0031580:intron | 30.0% | |
| !! | TGAAATGAAGAGCATTCAAT+TGG | - | chr1_1:58324865-58324884 | Msa0031580:intron | 30.0% |
| AGAAAATTTAAGAGCTAACC+TGG | + | chr1_1:58324993-58325012 | None:intergenic | 30.0% | |
| TTAATACTGGAGACTATTTG+AGG | - | chr1_1:58325043-58325062 | Msa0031580:intron | 30.0% | |
| TAATACTGGAGACTATTTGA+GGG | - | chr1_1:58325044-58325063 | Msa0031580:intron | 30.0% | |
| AACATAGTACTTGTTCTTGT+TGG | - | chr1_1:58325068-58325087 | Msa0031580:intron | 30.0% | |
| ACATTTGAGCTTACATCTTA+CGG | - | chr1_1:58325134-58325153 | Msa0031580:intron | 30.0% | |
| TTGACTAAAAAAGACCTGTT+TGG | - | chr1_1:58325170-58325189 | Msa0031580:intron | 30.0% | |
| AGGCTAATTCTAGTAGTTTA+TGG | - | chr1_1:58325253-58325272 | Msa0031580:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+AGG | + | chr1_1:58325409-58325428 | None:intergenic | 30.0% | |
| ! | ACTCGTTTAAGATTTATGCA+CGG | + | chr1_1:58325630-58325649 | None:intergenic | 30.0% |
| GAGTATTATTTAGAGAAGGA+GGG | - | chr1_1:58325646-58325665 | Msa0031580:intron | 30.0% | |
| TAGGCTTGAATGATTCTATT+TGG | - | chr1_1:58325737-58325756 | Msa0031580:intron | 30.0% | |
| AGGCTTGAATGATTCTATTT+GGG | - | chr1_1:58325738-58325757 | Msa0031580:intron | 30.0% | |
| AGAAAATTTAAGAGCTAACC+TGG | + | chr1_1:58324993-58325012 | None:intergenic | 30.0% | |
| TTAATACTGGAGACTATTTG+AGG | - | chr1_1:58325043-58325062 | Msa0031580:intron | 30.0% | |
| TAATACTGGAGACTATTTGA+GGG | - | chr1_1:58325044-58325063 | Msa0031580:intron | 30.0% | |
| AACATAGTACTTGTTCTTGT+TGG | - | chr1_1:58325068-58325087 | Msa0031580:intron | 30.0% | |
| ACATTTGAGCTTACATCTTA+CGG | - | chr1_1:58325134-58325153 | Msa0031580:intron | 30.0% | |
| TTGACTAAAAAAGACCTGTT+TGG | - | chr1_1:58325170-58325189 | Msa0031580:intron | 30.0% | |
| AGGCTAATTCTAGTAGTTTA+TGG | - | chr1_1:58325253-58325272 | Msa0031580:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+AGG | + | chr1_1:58325409-58325428 | None:intergenic | 30.0% | |
| ! | ACTCGTTTAAGATTTATGCA+CGG | + | chr1_1:58325630-58325649 | None:intergenic | 30.0% |
| GAGTATTATTTAGAGAAGGA+GGG | - | chr1_1:58325646-58325665 | Msa0031580:intron | 30.0% | |
| ATAATCATTCCTCACTAACT+TGG | + | chr1_1:58326694-58326713 | None:intergenic | 30.0% | |
| AACAAGTGCTTGCAAAAATT+TGG | - | chr1_1:58326761-58326780 | Msa0031580:intron | 30.0% | |
| ATTCCAAATTCTAAGTCACA+GGG | + | chr1_1:58326793-58326812 | None:intergenic | 30.0% | |
| GCAACAATTAGGATCAAAAA+AGG | + | chr1_1:58326963-58326982 | None:intergenic | 30.0% | |
| !! | GTTATTTCTACACATGTTCA+TGG | - | chr1_1:58327094-58327113 | Msa0031580:intron | 30.0% |
| GCAAAGATTAGAAGATAATG+GGG | + | chr1_1:58327347-58327366 | None:intergenic | 30.0% | |
| ! | CATCTTTTGTGTACTACTTT+TGG | - | chr1_1:58327366-58327385 | Msa0031580:intron | 30.0% |
| AAGCTGCATATTGAGTATTT+GGG | + | chr1_1:58327471-58327490 | None:intergenic | 30.0% | |
| TAAGCTGCATATTGAGTATT+TGG | + | chr1_1:58327472-58327491 | None:intergenic | 30.0% | |
| ! | CTTATTGTTGTTCAGTATAC+TGG | - | chr1_1:58327960-58327979 | Msa0031580:CDS | 30.0% |
| ATGATAGATGAGATGTCAGA+AGG | + | chr1_1:58323896-58323915 | None:intergenic | 35.0% | |
| !! | ATCCTTTTTGGTAGGAATGT+TGG | + | chr1_1:58323939-58323958 | None:intergenic | 35.0% |
| !! | AGATAGAGATCCTTTTTGGT+AGG | + | chr1_1:58323947-58323966 | None:intergenic | 35.0% |
| ! | AGCAAGATAGAGATCCTTTT+TGG | + | chr1_1:58323951-58323970 | None:intergenic | 35.0% |
| TATCATGATCGATGATGAGA+GGG | + | chr1_1:58323985-58324004 | None:intergenic | 35.0% | |
| TTATCATGATCGATGATGAG+AGG | + | chr1_1:58323986-58324005 | None:intergenic | 35.0% | |
| CATCGATCATGATAAAAAGG+TGG | - | chr1_1:58323991-58324010 | Msa0031580:three_prime_UTR | 35.0% | |
| TTTACTAGTGTCTTAGTGCA+TGG | - | chr1_1:58324284-58324303 | Msa0031580:CDS | 35.0% | |
| ATATAGACCGTAGGATTTAG+TGG | - | chr1_1:58324358-58324377 | Msa0031580:CDS | 35.0% | |
| !!! | TAGTGGTAGTTTTTTCTACG+AGG | - | chr1_1:58324375-58324394 | Msa0031580:CDS | 35.0% |
| ATGGTATCCATCAATGGTTT+AGG | + | chr1_1:58324791-58324810 | None:intergenic | 35.0% | |
| TAAACTCCATTATCCATCGA+TGG | + | chr1_1:58324810-58324829 | None:intergenic | 35.0% | |
| !!! | CAACTGTTTACACCGATTTT+TGG | + | chr1_1:58324838-58324857 | None:intergenic | 35.0% |
| CAAAAATCGGTGTAAACAGT+TGG | - | chr1_1:58324836-58324855 | Msa0031580:intron | 35.0% | |
| ATTCAATTGGAGAGAAAGAG+TGG | - | chr1_1:58324878-58324897 | Msa0031580:intron | 35.0% | |
| TAGATCTCTTGCCATTGTTT+GGG | - | chr1_1:58324925-58324944 | Msa0031580:intron | 35.0% | |
| AATACTGGAGACTATTTGAG+GGG | - | chr1_1:58325045-58325064 | Msa0031580:intron | 35.0% | |
| TAATCAGTGATGGCTTGATT+CGG | + | chr1_1:58325094-58325113 | None:intergenic | 35.0% | |
| AAACAGATCCTAATCAGTGA+TGG | + | chr1_1:58325104-58325123 | None:intergenic | 35.0% | |
| ! | ATCACTGATTAGGATCTGTT+TGG | - | chr1_1:58325103-58325122 | Msa0031580:intron | 35.0% |
| CAAAATGACAGTTACCAAAC+AGG | + | chr1_1:58325187-58325206 | None:intergenic | 35.0% | |
| !!! | AGCTTATAGCGTGTTTTGAT+AGG | - | chr1_1:58325233-58325252 | Msa0031580:intron | 35.0% |
| GACAATTATTGTGAGAAGGA+TGG | + | chr1_1:58325405-58325424 | None:intergenic | 35.0% | |
| CGAGTATTATTTAGAGAAGG+AGG | - | chr1_1:58325645-58325664 | Msa0031580:intron | 35.0% | |
| AAAAAGGACATAACTGTGGA+TGG | + | chr1_1:58325715-58325734 | None:intergenic | 35.0% | |
| GGCTTGAATGATTCTATTTG+GGG | - | chr1_1:58325739-58325758 | Msa0031580:intron | 35.0% | |
| TGATTTCTATGCATGATTCC+AGG | - | chr1_1:58325785-58325804 | Msa0031580:intron | 35.0% | |
| AATACTGGAGACTATTTGAG+GGG | - | chr1_1:58325045-58325064 | Msa0031580:intron | 35.0% | |
| TAATCAGTGATGGCTTGATT+CGG | + | chr1_1:58325094-58325113 | None:intergenic | 35.0% | |
| AAACAGATCCTAATCAGTGA+TGG | + | chr1_1:58325104-58325123 | None:intergenic | 35.0% | |
| ! | ATCACTGATTAGGATCTGTT+TGG | - | chr1_1:58325103-58325122 | Msa0031580:intron | 35.0% |
| CAAAATGACAGTTACCAAAC+AGG | + | chr1_1:58325187-58325206 | None:intergenic | 35.0% | |
| !!! | AGCTTATAGCGTGTTTTGAT+AGG | - | chr1_1:58325233-58325252 | Msa0031580:intron | 35.0% |
| GACAATTATTGTGAGAAGGA+TGG | + | chr1_1:58325405-58325424 | None:intergenic | 35.0% | |
| CGAGTATTATTTAGAGAAGG+AGG | - | chr1_1:58325645-58325664 | Msa0031580:intron | 35.0% | |
| AAAAAGGACATAACTGTGGA+TGG | + | chr1_1:58325715-58325734 | None:intergenic | 35.0% | |
| CAGTAATTGATCGCTAACAT+GGG | + | chr1_1:58326574-58326593 | None:intergenic | 35.0% | |
| ACAGTAATTGATCGCTAACA+TGG | + | chr1_1:58326575-58326594 | None:intergenic | 35.0% | |
| ! | TTACTGTTGATGAGTTCTCT+TGG | - | chr1_1:58326588-58326607 | Msa0031580:intron | 35.0% |
| ! | TACTGTTGATGAGTTCTCTT+GGG | - | chr1_1:58326589-58326608 | Msa0031580:intron | 35.0% |
| TCTACTAATCCAAGTTAGTG+AGG | - | chr1_1:58326682-58326701 | Msa0031580:intron | 35.0% | |
| GCACTTGTTTGACTGAATTT+GGG | + | chr1_1:58326750-58326769 | None:intergenic | 35.0% | |
| AGCACTTGTTTGACTGAATT+TGG | + | chr1_1:58326751-58326770 | None:intergenic | 35.0% | |
| GATTCCAAATTCTAAGTCAC+AGG | + | chr1_1:58326794-58326813 | None:intergenic | 35.0% | |
| GATACTTAGGTGAAGTGATA+TGG | + | chr1_1:58326824-58326843 | None:intergenic | 35.0% | |
| GATATGTGTTGAGGATACTT+AGG | + | chr1_1:58326837-58326856 | None:intergenic | 35.0% | |
| CTTGGATGCAAAAGATAGTT+GGG | + | chr1_1:58326871-58326890 | None:intergenic | 35.0% | |
| ACTTGGATGCAAAAGATAGT+TGG | + | chr1_1:58326872-58326891 | None:intergenic | 35.0% | |
| TGTCGAGTACTTCATCATTA+AGG | - | chr1_1:58327215-58327234 | Msa0031580:intron | 35.0% | |
| !! | AGATTAGAAGATAATGGGGA+AGG | + | chr1_1:58327343-58327362 | None:intergenic | 35.0% |
| !! | TTTGTGTACTACTTTTGGAC+AGG | - | chr1_1:58327371-58327390 | Msa0031580:intron | 35.0% |
| AGCTGCATATTGAGTATTTG+GGG | + | chr1_1:58327470-58327489 | None:intergenic | 35.0% | |
| !! | AGACAATTTTAGTACTACGC+TGG | + | chr1_1:58327570-58327589 | None:intergenic | 35.0% |
| ! | ACTCTTTCATTTTCTATGCC+TGG | + | chr1_1:58327709-58327728 | None:intergenic | 35.0% |
| TCATCTGTATCAGATTCATC+TGG | + | chr1_1:58327732-58327751 | None:intergenic | 35.0% | |
| ATGAATCTGATACAGATGAG+TGG | - | chr1_1:58327733-58327752 | Msa0031580:intron | 35.0% | |
| TTGTTGAAGGAATTGAAGTC+AGG | - | chr1_1:58327785-58327804 | Msa0031580:intron | 35.0% | |
| TTGCATAGTTCAGTGAATGT+TGG | + | chr1_1:58327829-58327848 | None:intergenic | 35.0% | |
| AACATTCACTGAACTATGCA+AGG | - | chr1_1:58327828-58327847 | Msa0031580:intron | 35.0% | |
| ACATTCACTGAACTATGCAA+GGG | - | chr1_1:58327829-58327848 | Msa0031580:intron | 35.0% | |
| ! | TGGATATCTTTGTTGTGTTG+TGG | - | chr1_1:58327985-58328004 | Msa0031580:CDS | 35.0% |
| AAAACGATTCCATACAGCGT+CGG | + | chr1_1:58323870-58323889 | None:intergenic | 40.0% | |
| TTTGGTAGGAATGTTGGCAA+GGG | + | chr1_1:58323933-58323952 | None:intergenic | 40.0% | |
| ! | TTTTGGTAGGAATGTTGGCA+AGG | + | chr1_1:58323934-58323953 | None:intergenic | 40.0% |
| TGCCAACATTCCTACCAAAA+AGG | - | chr1_1:58323934-58323953 | Msa0031580:three_prime_UTR | 40.0% | |
| AGGTGGTATTCTTCTTCCTA+AGG | - | chr1_1:58324008-58324027 | Msa0031580:exon | 40.0% | |
| ! | TATGTTTTCGACAAGGCAGA+TGG | - | chr1_1:58324108-58324127 | Msa0031580:CDS | 40.0% |
| ! | ATGTTTTCGACAAGGCAGAT+GGG | - | chr1_1:58324109-58324128 | Msa0031580:CDS | 40.0% |
| CTTGTCTTTGGTCGAAATTG+CGG | + | chr1_1:58324197-58324216 | None:intergenic | 40.0% | |
| AATTGCAGGAATGTAAAGGG+TGG | + | chr1_1:58324520-58324539 | None:intergenic | 40.0% | |
| AGGACATAAATGTCGATCGA+TGG | + | chr1_1:58324771-58324790 | None:intergenic | 40.0% | |
| TGGATACCATCGATGGATAA+TGG | - | chr1_1:58324801-58324820 | Msa0031580:intron | 40.0% | |
| CTAGATCTCTTGCCATTGTT+TGG | - | chr1_1:58324924-58324943 | Msa0031580:intron | 40.0% | |
| AGATCTCTTGCCATTGTTTG+GGG | - | chr1_1:58324926-58324945 | Msa0031580:intron | 40.0% | |
| TCTATCATCACCCCAAACAA+TGG | + | chr1_1:58324939-58324958 | None:intergenic | 40.0% | |
| TGATTTCTATGCCTGATTCC+AGG | - | chr1_1:58324972-58324991 | Msa0031580:intron | 40.0% | |
| TTAAGAGCTAACCTGGAATC+AGG | + | chr1_1:58324986-58325005 | None:intergenic | 40.0% | |
| ! | GAATCAAGCCATCACTGATT+AGG | - | chr1_1:58325093-58325112 | Msa0031580:intron | 40.0% |
| CTGATTAGGATCTGTTTGGT+TGG | - | chr1_1:58325107-58325126 | Msa0031580:intron | 40.0% | |
| ! | GAATCAAGCCATCACTGATT+AGG | - | chr1_1:58325093-58325112 | Msa0031580:intron | 40.0% |
| CTGATTAGGATCTGTTTGGT+TGG | - | chr1_1:58325107-58325126 | Msa0031580:intron | 40.0% | |
| AGTTCTCTTGGGCATTCAAA+AGG | - | chr1_1:58326600-58326619 | Msa0031580:intron | 40.0% | |
| AGTCAGTTAATTCGTAGCAG+AGG | + | chr1_1:58326655-58326674 | None:intergenic | 40.0% | |
| ! | TGAATTTGGGTTTGAACCTG+AGG | + | chr1_1:58326737-58326756 | None:intergenic | 40.0% |
| TGTCCCTGTGACTTAGAATT+TGG | - | chr1_1:58326787-58326806 | Msa0031580:intron | 40.0% | |
| ACTTAGGTGAAGTGATATGG+AGG | + | chr1_1:58326821-58326840 | None:intergenic | 40.0% | |
| ! | AAGAGCATGGATATGTGTTG+AGG | + | chr1_1:58326846-58326865 | None:intergenic | 40.0% |
| ACTTCATCATTAAGGACTGC+TGG | - | chr1_1:58327223-58327242 | Msa0031580:intron | 40.0% | |
| TGTAGTGAGCAAGACAGAAA+TGG | + | chr1_1:58327285-58327304 | None:intergenic | 40.0% | |
| GGAAGGAATCTCAGAAAATG+GGG | + | chr1_1:58327326-58327345 | None:intergenic | 40.0% | |
| GGGAAGGAATCTCAGAAAAT+GGG | + | chr1_1:58327327-58327346 | None:intergenic | 40.0% | |
| !! | CTAAGCTTGTTGATGTGTGT+TGG | - | chr1_1:58327407-58327426 | Msa0031580:intron | 40.0% |
| !! | GTGTGTTGGCTTGAAATTCA+TGG | - | chr1_1:58327421-58327440 | Msa0031580:intron | 40.0% |
| CATATTGAGTATTTGGGGAC+AGG | + | chr1_1:58327465-58327484 | None:intergenic | 40.0% | |
| TGGATTTCAGAACTGTTCTG+CGG | - | chr1_1:58327519-58327538 | Msa0031580:intron | 40.0% | |
| TGTTCTGCGGATTTATCAGT+TGG | - | chr1_1:58327532-58327551 | Msa0031580:intron | 40.0% | |
| !! | GATTTATCAGTTGGTGTCGA+AGG | - | chr1_1:58327541-58327560 | Msa0031580:intron | 40.0% |
| TGTCTGTTTGGATCCAAATG+TGG | - | chr1_1:58327585-58327604 | Msa0031580:intron | 40.0% | |
| TGTTTGGATCCAAATGTGGA+AGG | - | chr1_1:58327589-58327608 | Msa0031580:intron | 40.0% | |
| TGAGGATTACCTTCCACATT+TGG | + | chr1_1:58327601-58327620 | None:intergenic | 40.0% | |
| AATCCTACTACTGTGTTGTG+CGG | + | chr1_1:58327625-58327644 | None:intergenic | 40.0% | |
| AATCTGATACAGATGAGTGG+TGG | - | chr1_1:58327736-58327755 | Msa0031580:intron | 40.0% | |
| CATTCACTGAACTATGCAAG+GGG | - | chr1_1:58327830-58327849 | Msa0031580:intron | 40.0% | |
| TGTTGTTCAGTATACTGGGA+TGG | - | chr1_1:58327965-58327984 | Msa0031580:CDS | 40.0% | |
| AATCAACAGACATCAGGAAG+AGG | + | chr1_1:58328015-58328034 | None:intergenic | 40.0% | |
| TGGAACAATCAACAGACATC+AGG | + | chr1_1:58328021-58328040 | None:intergenic | 40.0% | |
| GACAGAGATTCAGGATTTGC+CGG | - | chr1_1:58323751-58323770 | Msa0031580:three_prime_UTR | 45.0% | |
| AGTTGTACGAGAGACTATGG+TGG | + | chr1_1:58323789-58323808 | None:intergenic | 45.0% | |
| TGGAGTTGTACGAGAGACTA+TGG | + | chr1_1:58323792-58323811 | None:intergenic | 45.0% | |
| !! | TCGGAAAGTGTTGGAAACGA+CGG | + | chr1_1:58323834-58323853 | None:intergenic | 45.0% |
| GACATGCTGCAAAGTGCAAA+GGG | - | chr1_1:58324139-58324158 | Msa0031580:CDS | 45.0% | |
| CGCAATTTCGACCAAAGACA+AGG | - | chr1_1:58324195-58324214 | Msa0031580:CDS | 45.0% | |
| CATGAACCCATATGCTCTTG+TGG | + | chr1_1:58324473-58324492 | None:intergenic | 45.0% | |
| AGAGCATATGGGTTCATGAG+TGG | - | chr1_1:58324475-58324494 | Msa0031580:intron | 45.0% | |
| AAGTGATGTCATAAACCGCG+AGG | - | chr1_1:58324711-58324730 | Msa0031580:intron | 45.0% | |
| CCATCGATGGTATCCATCAA+TGG | + | chr1_1:58324797-58324816 | None:intergenic | 45.0% | |
| ! | CCATTGATGGATACCATCGA+TGG | - | chr1_1:58324794-58324813 | Msa0031580:intron | 45.0% |
| CAGTTAATTCGTAGCAGAGG+AGG | + | chr1_1:58326652-58326671 | None:intergenic | 45.0% | |
| AAACTCATAGCAACCACCTC+AGG | - | chr1_1:58326718-58326737 | Msa0031580:intron | 45.0% | |
| ! | ATTTGGGTTTGAACCTGAGG+TGG | + | chr1_1:58326734-58326753 | None:intergenic | 45.0% |
| AGATAGTTGGGTGAAGAGCA+TGG | + | chr1_1:58326859-58326878 | None:intergenic | 45.0% | |
| GCATCCAAGTTCAGCTTGAT+TGG | - | chr1_1:58326882-58326901 | Msa0031580:CDS | 45.0% | |
| GGATCCAATCAAGCTGAACT+TGG | + | chr1_1:58326889-58326908 | None:intergenic | 45.0% | |
| GCTACAGAAGAAGGATCTTG+GGG | + | chr1_1:58326910-58326929 | None:intergenic | 45.0% | |
| CGCTACAGAAGAAGGATCTT+GGG | + | chr1_1:58326911-58326930 | None:intergenic | 45.0% | |
| ! | GCAGTTTTTGCTTCATCTGC+AGG | - | chr1_1:58326933-58326952 | Msa0031580:intron | 45.0% |
| TCATCATTAAGGACTGCTGG+TGG | - | chr1_1:58327226-58327245 | Msa0031580:intron | 45.0% | |
| ! | GGAAAAGCTGATGATGTTCG+TGG | - | chr1_1:58327256-58327275 | Msa0031580:intron | 45.0% |
| GGGGAAGGAATCTCAGAAAA+TGG | + | chr1_1:58327328-58327347 | None:intergenic | 45.0% | |
| CAACAAGCTTAGCGACTTCA+GGG | + | chr1_1:58327399-58327418 | None:intergenic | 45.0% | |
| TCAACAAGCTTAGCGACTTC+AGG | + | chr1_1:58327400-58327419 | None:intergenic | 45.0% | |
| !! | TTATCAGTTGGTGTCGAAGG+TGG | - | chr1_1:58327544-58327563 | Msa0031580:intron | 45.0% |
| ATGGGTGAGTTCTTCAATCC+AGG | - | chr1_1:58327688-58327707 | Msa0031580:intron | 45.0% | |
| AAGAGAGGTCTCGTTGTTGA+AGG | - | chr1_1:58327772-58327791 | Msa0031580:intron | 45.0% | |
| TGAACTATGCAAGGGGTCTT+GGG | - | chr1_1:58327837-58327856 | Msa0031580:intron | 45.0% | |
| GAGATTCAGGATTTGCCGGA+AGG | - | chr1_1:58323755-58323774 | Msa0031580:three_prime_UTR | 50.0% | |
| ATGGTGGCAATGCATCCTTC+CGG | + | chr1_1:58323773-58323792 | None:intergenic | 50.0% | |
| ! | ATTCCATACAGCGTCGGAGT+TGG | + | chr1_1:58323864-58323883 | None:intergenic | 50.0% |
| GTAGGAATGTTGGCAAGGGA+AGG | + | chr1_1:58323929-58323948 | None:intergenic | 50.0% | |
| CGACATGCTGCAAAGTGCAA+AGG | - | chr1_1:58324138-58324157 | Msa0031580:CDS | 50.0% | |
| GAAGTTGCAATTGGAGCGCA+TGG | - | chr1_1:58324229-58324248 | Msa0031580:CDS | 50.0% | |
| GAACCCATATGCTCTTGTGG+CGG | + | chr1_1:58324470-58324489 | None:intergenic | 50.0% | |
| GCAGGAATGTAAAGGGTGGT+TGG | + | chr1_1:58324516-58324535 | None:intergenic | 50.0% | |
| GGGGTGATGATAGACGCTAT+TGG | - | chr1_1:58324945-58324964 | Msa0031580:intron | 50.0% | |
| GGGGTGATGATAGACGCTAT+TGG | - | chr1_1:58324945-58324964 | Msa0031580:intron | 50.0% | |
| GCGCTACAGAAGAAGGATCT+TGG | + | chr1_1:58326912-58326931 | None:intergenic | 50.0% | |
| AACTGCAGCGCTACAGAAGA+AGG | + | chr1_1:58326919-58326938 | None:intergenic | 50.0% | |
| GTTCGGTTGCCGCAACAATT+AGG | + | chr1_1:58326974-58326993 | None:intergenic | 50.0% | |
| AGTATTTGGGGACAGGACGA+TGG | + | chr1_1:58327458-58327477 | None:intergenic | 50.0% | |
| GTCCTACTGTGAGAAGCGAT+GGG | - | chr1_1:58327650-58327669 | Msa0031580:intron | 50.0% | |
| TGGGTGGTTGGAGATTGAGA+TGG | - | chr1_1:58327669-58327688 | Msa0031580:intron | 50.0% | |
| GGGTGGTTGGAGATTGAGAT+GGG | - | chr1_1:58327670-58327689 | Msa0031580:intron | 50.0% | |
| ATACAGATGAGTGGTGGTCG+TGG | - | chr1_1:58327742-58327761 | Msa0031580:intron | 50.0% | |
| CTGAACTATGCAAGGGGTCT+TGG | - | chr1_1:58327836-58327855 | Msa0031580:intron | 50.0% | |
| CGTACAACTCCAGTTGACGC+CGG | - | chr1_1:58323800-58323819 | Msa0031580:three_prime_UTR | 55.0% | |
| ! | GGAGGCTGATCGGAAAGTGT+TGG | + | chr1_1:58323843-58323862 | None:intergenic | 55.0% |
| GGAGCGCATGGTGACAAACA+AGG | - | chr1_1:58324241-58324260 | Msa0031580:CDS | 55.0% | |
| AGGACTGCTGGTGGTCATTG+AGG | - | chr1_1:58327235-58327254 | Msa0031580:intron | 55.0% | |
| ACTACTGTGTTGTGCGGCTG+AGG | + | chr1_1:58327619-58327638 | None:intergenic | 55.0% | |
| CAGCCGCACAACACAGTAGT+AGG | - | chr1_1:58327619-58327638 | Msa0031580:intron | 55.0% | |
| CGTCCTACTGTGAGAAGCGA+TGG | - | chr1_1:58327649-58327668 | Msa0031580:intron | 55.0% | |
| CACCCATCGCTTCTCACAGT+AGG | + | chr1_1:58327655-58327674 | None:intergenic | 55.0% | |
| CTACTGTGAGAAGCGATGGG+TGG | - | chr1_1:58327653-58327672 | Msa0031580:intron | 55.0% | |
| TGTGAGAAGCGATGGGTGGT+TGG | - | chr1_1:58327657-58327676 | Msa0031580:intron | 55.0% | |
| GGAAACGACGGAGAGTCTGC+CGG | + | chr1_1:58323822-58323841 | None:intergenic | 60.0% | |
| CGTCGGAGTTGGAGGCTGAT+CGG | + | chr1_1:58323853-58323872 | None:intergenic | 60.0% | |
| ! | CCATACAGCGTCGGAGTTGG+AGG | + | chr1_1:58323861-58323880 | None:intergenic | 60.0% |
| CCTCCAACTCCGACGCTGTA+TGG | - | chr1_1:58323858-58323877 | Msa0031580:three_prime_UTR | 60.0% | |
| ATATGCTCTTGTGGCGGCGG+GGG | + | chr1_1:58324464-58324483 | None:intergenic | 60.0% | |
| CATATGCTCTTGTGGCGGCG+GGG | + | chr1_1:58324465-58324484 | None:intergenic | 60.0% | |
| CCATATGCTCTTGTGGCGGC+GGG | + | chr1_1:58324466-58324485 | None:intergenic | 60.0% | |
| CCCATATGCTCTTGTGGCGG+CGG | + | chr1_1:58324467-58324486 | None:intergenic | 60.0% | |
| ! | CCGCCGCCACAAGAGCATAT+GGG | - | chr1_1:58324464-58324483 | Msa0031580:intron | 60.0% |
| CAGATGAGTGGTGGTCGTGG+TGG | - | chr1_1:58327745-58327764 | Msa0031580:intron | 60.0% | |
| TGAGTGGTGGTCGTGGTGGT+TGG | - | chr1_1:58327749-58327768 | Msa0031580:intron | 60.0% | |
| GGTCGTGGTGGTTGGAAGAG+AGG | - | chr1_1:58327757-58327776 | Msa0031580:intron | 60.0% | |
| ATGCAAGGGGTCTTGGGTCG+TGG | - | chr1_1:58327843-58327862 | Msa0031580:intron | 60.0% | |
| GAGAGTCTGCCGGCGTCAAC+TGG | + | chr1_1:58323812-58323831 | None:intergenic | 65.0% | |
| ! | CCCGCCGCCACAAGAGCATA+TGG | - | chr1_1:58324463-58324482 | Msa0031580:intron | 65.0% |
| GGGGGATCGTTCAAGCCTCG+CGG | + | chr1_1:58324729-58324748 | None:intergenic | 65.0% | |
| ! | TCTTGTGGCGGCGGGGGTGT+TGG | + | chr1_1:58324458-58324477 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 58323749 | 58328093 | 58323749 | ID=Msa0031580;Name=Msa0031580 |
| chr1_1 | mRNA | 58323749 | 58328093 | 58323749 | ID=Msa0031580-mRNA-1;Parent=Msa0031580;Name=Msa0031580-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.5|0.33|1|1|1|3|268|240 |
| chr1_1 | exon | 58323749 | 58324449 | 58323749 | ID=Msa0031580-mRNA-1:exon:17819;Parent=Msa0031580-mRNA-1 |
| chr1_1 | exon | 58326849 | 58326914 | 58326849 | ID=Msa0031580-mRNA-1:exon:17818;Parent=Msa0031580-mRNA-1 |
| chr1_1 | exon | 58327870 | 58328093 | 58327870 | ID=Msa0031580-mRNA-1:exon:17817;Parent=Msa0031580-mRNA-1 |
| chr1_1 | CDS | 58327870 | 58328093 | 58327870 | ID=Msa0031580-mRNA-1:cds;Parent=Msa0031580-mRNA-1 |
| chr1_1 | CDS | 58326849 | 58326914 | 58326849 | ID=Msa0031580-mRNA-1:cds;Parent=Msa0031580-mRNA-1 |
| chr1_1 | CDS | 58324017 | 58324449 | 58324017 | ID=Msa0031580-mRNA-1:cds;Parent=Msa0031580-mRNA-1 |
| chr1_1 | three_prime_UTR | 58323749 | 58324016 | 58323749 | ID=Msa0031580-mRNA-1:three_prime_utr;Parent=Msa0031580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
