AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1143060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143060 MtrunA17_Chr3g0123081 96.507 229 6 1 1 229 1 227 1.47e-165 456
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143060 AT1G67700.2 69.787 235 60 5 1 229 1 230 2.29e-112 322
Msa1143060 AT1G67700.5 69.787 235 60 5 1 229 1 230 2.29e-112 322
Msa1143060 AT1G67700.4 69.787 235 60 5 1 229 1 230 2.36e-112 322
Msa1143060 AT1G67700.1 69.787 235 60 5 1 229 1 230 2.36e-112 322
Msa1143060 AT1G67700.3 69.362 235 60 6 1 229 1 229 7.97e-110 315

Find 65 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATGTTGGCGTTGAGTTC+TGG 0.117900 7_4:-18258098 None:intergenic
ATTACCGTCGTCTTCAATTT+TGG 0.126709 7_4:-18258212 None:intergenic
TATCCTCTTAGTATTGTTTC+TGG 0.147550 7_4:+18258280 Msa1143060:CDS
CGAATGAAGACGACGAATTT+AGG 0.163591 7_4:-18258235 None:intergenic
TCTTGGCAAATTTATTTATA+AGG 0.207596 7_4:+18258345 Msa1143060:CDS
GAGAGAGAGAATTCGATAAA+AGG 0.261619 7_4:-18257899 None:intergenic
TGTGCTAATACCAGGGTTAA+AGG 0.270565 7_4:+18260525 Msa1143060:intron
GCTTTGTGCTGTTTGTAAAT+TGG 0.299833 7_4:+18260618 Msa1143060:three_prime_UTR
GCTGTTTGTAAATTGGTTAA+TGG 0.314824 7_4:+18260625 Msa1143060:three_prime_UTR
GTATGGCTAATGTTTATCTT+TGG 0.328706 7_4:+18258257 Msa1143060:CDS
AACTAACTAACTCAGGTAAC+TGG 0.361517 7_4:-18257934 None:intergenic
GGAGATGTAAAGGAGTCCTT+TGG 0.366310 7_4:+18260323 Msa1143060:CDS
TGGTACCACTGCTAAAATTA+TGG 0.385812 7_4:+18258303 Msa1143060:CDS
TGATGTTGGCGTTGAGTTCT+GGG 0.389647 7_4:-18258097 None:intergenic
TTGAATCGTTAAGTGCTGTT+TGG 0.396064 7_4:+18260575 Msa1143060:three_prime_UTR
TTAAAGGATGAACTTATATC+AGG 0.402851 7_4:+18260541 Msa1143060:three_prime_UTR
GAGTGAGTCGTTGTGGAACC+TGG 0.423768 7_4:-18258053 None:intergenic
TGAGTTCTGGGGAATTGTCT+TGG 0.431127 7_4:-18258085 None:intergenic
TAAAATTATGTGTTGGGTGC+AGG 0.440944 7_4:-18260692 None:intergenic
GAGATGTAAAGGAGTCCTTT+GGG 0.442632 7_4:+18260324 Msa1143060:CDS
TGCAGGTATAAGAACAAAAC+AGG 0.451906 7_4:-18260675 None:intergenic
GAAATTATGTGTGATTATAA+AGG 0.452430 7_4:-18260736 None:intergenic
GATTATGAATTGCAGGAGAA+TGG 0.452904 7_4:+18259617 Msa1143060:intron
TCGGCTACTGAATTCAGATA+TGG 0.454393 7_4:+18259493 Msa1143060:CDS
AGAACATAAAATTATGTGTT+GGG 0.454543 7_4:-18260698 None:intergenic
AGAGAGAGAATTCGATAAAA+GGG 0.454676 7_4:-18257898 None:intergenic
CATGCGTTTCGAGATTCTCT+CGG 0.455696 7_4:-18257975 None:intergenic
TGATGCAACATATTTGATAG+AGG 0.456476 7_4:+18260427 Msa1143060:three_prime_UTR
TTCTACCAGTGATGTTATTG+AGG 0.459749 7_4:+18259658 Msa1143060:CDS
ACTAACTCAGGTAACTGGAT+AGG 0.494951 7_4:-18257929 None:intergenic
TCTCGGAGTTGTTGTGATGA+TGG 0.503996 7_4:-18257958 None:intergenic
CACTATCAAGTTCAAGCTCC+AGG 0.504458 7_4:+18258035 Msa1143060:CDS
CTAACTCAGGTAACTGGATA+GGG 0.508336 7_4:-18257928 None:intergenic
ATTCGTCGTCTTCATTCGTA+TGG 0.513591 7_4:+18258240 Msa1143060:CDS
TCTGGGGAATTGTCTTGGAA+TGG 0.516106 7_4:-18258080 None:intergenic
TCAGAAATGTCTTAAAGTAA+TGG 0.522609 7_4:-18260760 None:intergenic
CCTCTTAGTATTGTTTCTGG+TGG 0.528582 7_4:+18258283 Msa1143060:CDS
TGTCTTGGTTGTTGAAGCAA+AGG 0.532305 7_4:+18258135 Msa1143060:CDS
AAAGCTTTCTAAAGCTCATA+CGG 0.537225 7_4:-18260600 None:intergenic
GTCTTGGTTGTTGAAGCAAA+GGG 0.544651 7_4:+18258136 Msa1143060:CDS
CCACCAGAAACAATACTAAG+AGG 0.550315 7_4:-18258283 None:intergenic
TCAATTCAAATAGGATGAGA+AGG 0.553484 7_4:+18259429 Msa1143060:intron
CCAAGACATGGTGGTGGTGG+TGG 0.560506 7_4:-18258120 None:intergenic
ATCTCGAAACGCATGGAAGT+AGG 0.561046 7_4:+18257983 Msa1143060:exon
CTGGAGCTTGAACTTGATAG+TGG 0.561983 7_4:-18258034 None:intergenic
TGAATCTTCCTCTGACTCAT+CGG 0.568977 7_4:-18260372 None:intergenic
TATCACCTCAATAACATCAC+TGG 0.580790 7_4:-18259663 None:intergenic
CAACCAAGACATGGTGGTGG+TGG 0.586870 7_4:-18258123 None:intergenic
TGGAGAAGAGTGAGTCGTTG+TGG 0.587691 7_4:-18258060 None:intergenic
TGATGGTAACTAACTAACTC+AGG 0.598757 7_4:-18257941 None:intergenic
CGAGAGAATCTCGAAACGCA+TGG 0.599024 7_4:+18257976 Msa1143060:exon
TACTGCTACCGATGAGTCAG+AGG 0.607803 7_4:+18260364 Msa1143060:CDS
CAGAACATAAAATTATGTGT+TGG 0.611659 7_4:-18260699 None:intergenic
ACAACACCGTGTACTAAAGT+CGG 0.619103 7_4:+18259474 Msa1143060:CDS
TAACGATGTTATTTCCCCAA+AGG 0.619108 7_4:-18260339 None:intergenic
TTGCTTCAACAACCAAGACA+TGG 0.623521 7_4:-18258132 None:intergenic
GAGCTTGAACTTGATAGTGG+TGG 0.644572 7_4:-18258031 None:intergenic
ATTATGTGTGATTATAAAGG+CGG 0.648477 7_4:-18260733 None:intergenic
GATGTTGGCGTTGAGTTCTG+GGG 0.652469 7_4:-18258096 None:intergenic
CAGTAGCCGACTTTAGTACA+CGG 0.657329 7_4:-18259480 None:intergenic
CAACAACCAAGACATGGTGG+TGG 0.667199 7_4:-18258126 None:intergenic
CTTCAACAACCAAGACATGG+TGG 0.675309 7_4:-18258129 None:intergenic
TTACCCAAAATTGAAGACGA+CGG 0.694339 7_4:+18258208 Msa1143060:CDS
AGATGTAAAGGAGTCCTTTG+GGG 0.702608 7_4:+18260325 Msa1143060:CDS
AATGCAAGAATATTACAACT+CGG 0.706659 7_4:-18260799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATGAAAAAAAAGTTA+GGG - chr7_4:18258422-18258441 None:intergenic 10.0%
!! AAATTAATGAAAAAAAAGTT+AGG - chr7_4:18258423-18258442 None:intergenic 10.0%
!!! TTTAAATGTTCATAATTTTA+TGG + chr7_4:18259040-18259059 Msa1143060:intron 10.0%
!! AAATATATGTATTGAAATAT+AGG - chr7_4:18259540-18259559 None:intergenic 10.0%
!! ATTAATGAAAAAAAAGTTAG+GGG - chr7_4:18258421-18258440 None:intergenic 15.0%
!! AAAAAAAAAAATATCGAGAA+TGG + chr7_4:18258491-18258510 Msa1143060:intron 15.0%
!! AAAAAAAAAATATCGAGAAT+GGG + chr7_4:18258492-18258511 Msa1143060:intron 15.0%
!! TATGAACATTTAAAAAATCA+TGG - chr7_4:18259034-18259053 None:intergenic 15.0%
!! TAATAACTTTACAGAAATAA+TGG + chr7_4:18259819-18259838 Msa1143060:intron 15.0%
!! ATTTATGAAATATGATAGAT+AGG + chr7_4:18259892-18259911 Msa1143060:intron 15.0%
!!! TTTTATTGTTTGTTGTTTTA+TGG + chr7_4:18260898-18260917 Msa1143060:three_prime_UTR 15.0%
!!! TTTATTGTTTGTTGTTTTAT+GGG + chr7_4:18260899-18260918 Msa1143060:three_prime_UTR 15.0%
!! TCTTGGCAAATTTATTTATA+AGG + chr7_4:18258345-18258364 Msa1143060:CDS 20.0%
!! AAAAAAAAATATCGAGAATG+GGG + chr7_4:18258493-18258512 Msa1143060:intron 20.0%
!!! TTTACCTTCAAGATAATTTT+AGG + chr7_4:18258728-18258747 Msa1143060:intron 20.0%
!! ACTCTATTAAACTTTCAAAT+TGG + chr7_4:18258863-18258882 Msa1143060:intron 20.0%
!! TAGTAAGTGGTTAAAATATA+AGG - chr7_4:18258922-18258941 None:intergenic 20.0%
!! ACAAATAAAAGTTCAGTTTA+AGG - chr7_4:18259696-18259715 None:intergenic 20.0%
!!! ATCTCTACAATTTTCAATTA+GGG - chr7_4:18260092-18260111 None:intergenic 20.0%
!!! AATCTCTACAATTTTCAATT+AGG - chr7_4:18260093-18260112 None:intergenic 20.0%
!!! ATGCTTTCTTTTTAGTTATA+AGG + chr7_4:18260166-18260185 Msa1143060:intron 20.0%
!! AGAACATAAAATTATGTGTT+GGG - chr7_4:18260701-18260720 None:intergenic 20.0%
!! GAAATTATGTGTGATTATAA+AGG - chr7_4:18260739-18260758 None:intergenic 20.0%
! AAAGTTAAGGACTAATATAG+TGG - chr7_4:18258789-18258808 None:intergenic 25.0%
! ATATTAGTCCTTAACTTTGT+AGG + chr7_4:18258791-18258810 Msa1143060:intron 25.0%
! TATTAGTCCTTAACTTTGTA+GGG + chr7_4:18258792-18258811 Msa1143060:intron 25.0%
!! AAGATCAAATTGATAGTAAG+TGG - chr7_4:18258935-18258954 None:intergenic 25.0%
! ATAGACAACGGATAAAATTT+CGG + chr7_4:18259214-18259233 Msa1143060:intron 25.0%
!! TTTTTCTTGGTTATGTATGT+TGG + chr7_4:18259366-18259385 Msa1143060:intron 25.0%
!!! TTTTTCAGATTATGAATTGC+AGG + chr7_4:18259610-18259629 Msa1143060:intron 25.0%
! TATTTAAAGACAATACTCCA+AGG + chr7_4:18259989-18260008 Msa1143060:intron 25.0%
!!! CTATTTAAAGACTTGCTAAT+AGG + chr7_4:18260012-18260031 Msa1143060:intron 25.0%
!!! TTTTGTTATGATGGTTGTTT+AGG - chr7_4:18260065-18260084 None:intergenic 25.0%
!!! TAGGGATATTTTTGTTATGA+TGG - chr7_4:18260074-18260093 None:intergenic 25.0%
!!! GGTTCTTTTTCATAATATTG+AGG + chr7_4:18260187-18260206 Msa1143060:intron 25.0%
!! GATAAAGTGAAAGACTTTTT+CGG + chr7_4:18260302-18260321 Msa1143060:CDS 25.0%
! TTAAAGGATGAACTTATATC+AGG + chr7_4:18260541-18260560 Msa1143060:three_prime_UTR 25.0%
! CAGAACATAAAATTATGTGT+TGG - chr7_4:18260702-18260721 None:intergenic 25.0%
! ATTATGTGTGATTATAAAGG+CGG - chr7_4:18260736-18260755 None:intergenic 25.0%
! TCAGAAATGTCTTAAAGTAA+TGG - chr7_4:18260763-18260782 None:intergenic 25.0%
! AATGCAAGAATATTACAACT+CGG - chr7_4:18260802-18260821 None:intergenic 25.0%
!!! ATTCTTGCATTTTATTTCAC+AGG + chr7_4:18260811-18260830 Msa1143060:three_prime_UTR 25.0%
AGAGAGAGAATTCGATAAAA+GGG - chr7_4:18257901-18257920 None:intergenic 30.0%
GTATGGCTAATGTTTATCTT+TGG + chr7_4:18258257-18258276 Msa1143060:CDS 30.0%
TATCCTCTTAGTATTGTTTC+TGG + chr7_4:18258280-18258299 Msa1143060:CDS 30.0%
! GCTGCTAAAGATAATTTTCT+TGG + chr7_4:18258328-18258347 Msa1143060:CDS 30.0%
TTAGGGGAAAAAATCTTACT+CGG - chr7_4:18258405-18258424 None:intergenic 30.0%
CACAAATAATCAGCAACAAT+GGG - chr7_4:18258584-18258603 None:intergenic 30.0%
ACACAAATAATCAGCAACAA+TGG - chr7_4:18258585-18258604 None:intergenic 30.0%
AAATGATTCTAACTTGAAGC+CGG + chr7_4:18258612-18258631 Msa1143060:intron 30.0%
! AAACTTAAAGCTCTAATGTC+CGG - chr7_4:18258634-18258653 None:intergenic 30.0%
AAGGTAAAGTCATTCATGTT+TGG - chr7_4:18258716-18258735 None:intergenic 30.0%
! ACCTTCAAGATAATTTTAGG+CGG + chr7_4:18258731-18258750 Msa1143060:intron 30.0%
! TTTGAGATATTCACAATCTC+AGG - chr7_4:18258833-18258852 None:intergenic 30.0%
ATAGCAAGCAGTTAAATACA+TGG - chr7_4:18258890-18258909 None:intergenic 30.0%
!! TTAACTGCTTGCTATCAATT+AGG + chr7_4:18258895-18258914 Msa1143060:intron 30.0%
GGGACTAAATTCATAATAAG+CGG - chr7_4:18258967-18258986 None:intergenic 30.0%
TCACATTGATGTTAGTCAAA+TGG - chr7_4:18259114-18259133 None:intergenic 30.0%
GAACTACGTGTATGAAAATA+CGG + chr7_4:18259154-18259173 Msa1143060:intron 30.0%
TGTGTGACCAACTATAATTA+TGG + chr7_4:18259177-18259196 Msa1143060:intron 30.0%
TCTCTTGCCATAATTATAGT+TGG - chr7_4:18259187-18259206 None:intergenic 30.0%
! AGAGACTTTTTGATAGACAA+CGG + chr7_4:18259202-18259221 Msa1143060:intron 30.0%
! TGAGCTCTTTTTAACCATTA+TGG + chr7_4:18259305-18259324 Msa1143060:intron 30.0%
AGAAATTAGAGTCTCCATAA+TGG - chr7_4:18259322-18259341 None:intergenic 30.0%
!!! ATGATGAGCATGTTTTTTCT+TGG + chr7_4:18259353-18259372 Msa1143060:intron 30.0%
TCAATTCAAATAGGATGAGA+AGG + chr7_4:18259429-18259448 Msa1143060:intron 30.0%
TCACTGAATTCATCTTCAAT+TGG - chr7_4:18259568-18259587 None:intergenic 30.0%
TTTAAACCTTATACCGCATT+AGG + chr7_4:18259734-18259753 Msa1143060:intron 30.0%
TTAAACCTTATACCGCATTA+GGG + chr7_4:18259735-18259754 Msa1143060:intron 30.0%
AAAAGTTACATGAACAACCA+GGG - chr7_4:18259794-18259813 None:intergenic 30.0%
! AATAATGGAAACTGTCTGTT+AGG + chr7_4:18259834-18259853 Msa1143060:intron 30.0%
TTTCTATTCCATTCAATTCC+CGG - chr7_4:18259863-18259882 None:intergenic 30.0%
!! AGAGTATTGTCTATTGTGAA+GGG - chr7_4:18259944-18259963 None:intergenic 30.0%
!! TAGAGTATTGTCTATTGTGA+AGG - chr7_4:18259945-18259964 None:intergenic 30.0%
!!! GTTTTTAGTTTATCTGGTGT+AGG - chr7_4:18260275-18260294 None:intergenic 30.0%
!!! GCTACAGTTTTTAGTTTATC+TGG - chr7_4:18260281-18260300 None:intergenic 30.0%
TGATGCAACATATTTGATAG+AGG + chr7_4:18260427-18260446 Msa1143060:three_prime_UTR 30.0%
TATGCACTGTAATGAATACA+TGG + chr7_4:18260462-18260481 Msa1143060:intron 30.0%
!!! ATTGTTTTTGTGCTAATACC+AGG + chr7_4:18260517-18260536 Msa1143060:intron 30.0%
!!! TTGTTTTTGTGCTAATACCA+GGG + chr7_4:18260518-18260537 Msa1143060:intron 30.0%
!! AAAGCTTTCTAAAGCTCATA+CGG - chr7_4:18260603-18260622 None:intergenic 30.0%
GCTGTTTGTAAATTGGTTAA+TGG + chr7_4:18260625-18260644 Msa1143060:three_prime_UTR 30.0%
GAGAGAGAGAATTCGATAAA+AGG - chr7_4:18257902-18257921 None:intergenic 35.0%
AACTAACTAACTCAGGTAAC+TGG - chr7_4:18257937-18257956 None:intergenic 35.0%
TGATGGTAACTAACTAACTC+AGG - chr7_4:18257944-18257963 None:intergenic 35.0%
GTTGAAGCAAAGGGTAAAAA+AGG + chr7_4:18258145-18258164 Msa1143060:CDS 35.0%
!! TCTTCAATTTTGGGTAAAGG+AGG - chr7_4:18258205-18258224 None:intergenic 35.0%
!! TCGTCTTCAATTTTGGGTAA+AGG - chr7_4:18258208-18258227 None:intergenic 35.0%
TTACCCAAAATTGAAGACGA+CGG + chr7_4:18258208-18258227 Msa1143060:CDS 35.0%
! TTACCGTCGTCTTCAATTTT+GGG - chr7_4:18258214-18258233 None:intergenic 35.0%
! ATTACCGTCGTCTTCAATTT+TGG - chr7_4:18258215-18258234 None:intergenic 35.0%
TGGTACCACTGCTAAAATTA+TGG + chr7_4:18258303-18258322 Msa1143060:CDS 35.0%
!! AGCAACCATAATTTTAGCAG+TGG - chr7_4:18258311-18258330 None:intergenic 35.0%
TCCGCCTAAAATTATCTTGA+AGG - chr7_4:18258735-18258754 None:intergenic 35.0%
ACTTTATAGGGCTCTCAAAT+AGG - chr7_4:18259067-18259086 None:intergenic 35.0%
AATTCGTCCCTGACTTTATA+GGG - chr7_4:18259079-18259098 None:intergenic 35.0%
AAATTCGTCCCTGACTTTAT+AGG - chr7_4:18259080-18259099 None:intergenic 35.0%
! TGTATGTTGGTTATGCATGT+TGG + chr7_4:18259379-18259398 Msa1143060:intron 35.0%
CTGCTTGCTTCAATTCAAAT+AGG + chr7_4:18259420-18259439 Msa1143060:intron 35.0%
GATTATGAATTGCAGGAGAA+TGG + chr7_4:18259617-18259636 Msa1143060:intron 35.0%
TTCTACCAGTGATGTTATTG+AGG + chr7_4:18259658-18259677 Msa1143060:CDS 35.0%
TATCACCTCAATAACATCAC+TGG - chr7_4:18259666-18259685 None:intergenic 35.0%
GAACATATATGTCCCTAATG+CGG - chr7_4:18259750-18259769 None:intergenic 35.0%
GAAAAGTTACATGAACAACC+AGG - chr7_4:18259795-18259814 None:intergenic 35.0%
TTCTATTCCATTCAATTCCC+GGG - chr7_4:18259862-18259881 None:intergenic 35.0%
! GAGTATTGTCTATTGTGAAG+GGG - chr7_4:18259943-18259962 None:intergenic 35.0%
AGCAAGTCTTTAAATAGCCT+TGG - chr7_4:18260009-18260028 None:intergenic 35.0%
!! TAGGTGGTTAGTTTGTTATG+TGG - chr7_4:18260046-18260065 None:intergenic 35.0%
TGTTATGATGGTTGTTTAGG+TGG - chr7_4:18260062-18260081 None:intergenic 35.0%
!!! AGACTTTTTCGGAGATGTAA+AGG + chr7_4:18260313-18260332 Msa1143060:CDS 35.0%
!! TAACGATGTTATTTCCCCAA+AGG - chr7_4:18260342-18260361 None:intergenic 35.0%
CACTGTAATGAATACATGGT+AGG + chr7_4:18260466-18260485 Msa1143060:intron 35.0%
ATAAGTTCATCCTTTAACCC+TGG - chr7_4:18260538-18260557 None:intergenic 35.0%
! TTGAATCGTTAAGTGCTGTT+TGG + chr7_4:18260575-18260594 Msa1143060:three_prime_UTR 35.0%
!! GCTTTGTGCTGTTTGTAAAT+TGG + chr7_4:18260618-18260637 Msa1143060:three_prime_UTR 35.0%
TGCAGGTATAAGAACAAAAC+AGG - chr7_4:18260678-18260697 None:intergenic 35.0%
TAAAATTATGTGTTGGGTGC+AGG - chr7_4:18260695-18260714 None:intergenic 35.0%
CTAACTCAGGTAACTGGATA+GGG - chr7_4:18257931-18257950 None:intergenic 40.0%
ACTAACTCAGGTAACTGGAT+AGG - chr7_4:18257932-18257951 None:intergenic 40.0%
TTGCTTCAACAACCAAGACA+TGG - chr7_4:18258135-18258154 None:intergenic 40.0%
TGTCTTGGTTGTTGAAGCAA+AGG + chr7_4:18258135-18258154 Msa1143060:CDS 40.0%
GTCTTGGTTGTTGAAGCAAA+GGG + chr7_4:18258136-18258155 Msa1143060:CDS 40.0%
!! TCAATTTTGGGTAAAGGAGG+AGG - chr7_4:18258202-18258221 None:intergenic 40.0%
CGAATGAAGACGACGAATTT+AGG - chr7_4:18258238-18258257 None:intergenic 40.0%
ATTCGTCGTCTTCATTCGTA+TGG + chr7_4:18258240-18258259 Msa1143060:CDS 40.0%
CCACCAGAAACAATACTAAG+AGG - chr7_4:18258286-18258305 None:intergenic 40.0%
!! CCTCTTAGTATTGTTTCTGG+TGG + chr7_4:18258283-18258302 Msa1143060:CDS 40.0%
AGTGGTATGATTCTCGCTTA+GGG - chr7_4:18258551-18258570 None:intergenic 40.0%
TAGTGGTATGATTCTCGCTT+AGG - chr7_4:18258552-18258571 None:intergenic 40.0%
AATCAGCAACAATGGGCATT+TGG - chr7_4:18258577-18258596 None:intergenic 40.0%
! TTTGTAGGGTGCTCTCAAAT+AGG + chr7_4:18258806-18258825 Msa1143060:intron 40.0%
TTTGAGAGCCCTATAAAGTC+AGG + chr7_4:18259068-18259087 Msa1143060:intron 40.0%
TTGAGAGCCCTATAAAGTCA+GGG + chr7_4:18259069-18259088 Msa1143060:intron 40.0%
AAAGTCAGGGACGAATTTGA+TGG + chr7_4:18259082-18259101 Msa1143060:intron 40.0%
TGACTAACATCAATGTGACG+TGG + chr7_4:18259116-18259135 Msa1143060:intron 40.0%
AAGCAGTGAGTAACAAAGAC+AGG - chr7_4:18259406-18259425 None:intergenic 40.0%
ACAACACCGTGTACTAAAGT+CGG + chr7_4:18259474-18259493 Msa1143060:CDS 40.0%
TCGGCTACTGAATTCAGATA+TGG + chr7_4:18259493-18259512 Msa1143060:CDS 40.0%
TATGTCCCTAATGCGGTATA+AGG - chr7_4:18259743-18259762 None:intergenic 40.0%
AGTACAACATAGAAGAACCC+TGG + chr7_4:18259774-18259793 Msa1143060:intron 40.0%
GAGATGTAAAGGAGTCCTTT+GGG + chr7_4:18260324-18260343 Msa1143060:CDS 40.0%
AGATGTAAAGGAGTCCTTTG+GGG + chr7_4:18260325-18260344 Msa1143060:CDS 40.0%
TGAATCTTCCTCTGACTCAT+CGG - chr7_4:18260375-18260394 None:intergenic 40.0%
TGTGCTAATACCAGGGTTAA+AGG + chr7_4:18260525-18260544 Msa1143060:intron 40.0%
TCTCGGAGTTGTTGTGATGA+TGG - chr7_4:18257961-18257980 None:intergenic 45.0%
CATGCGTTTCGAGATTCTCT+CGG - chr7_4:18257978-18257997 None:intergenic 45.0%
ATCTCGAAACGCATGGAAGT+AGG + chr7_4:18257983-18258002 Msa1143060:exon 45.0%
!! GAGCTTGAACTTGATAGTGG+TGG - chr7_4:18258034-18258053 None:intergenic 45.0%
CTGGAGCTTGAACTTGATAG+TGG - chr7_4:18258037-18258056 None:intergenic 45.0%
CACTATCAAGTTCAAGCTCC+AGG + chr7_4:18258035-18258054 Msa1143060:CDS 45.0%
TCTGGGGAATTGTCTTGGAA+TGG - chr7_4:18258083-18258102 None:intergenic 45.0%
!! TGAGTTCTGGGGAATTGTCT+TGG - chr7_4:18258088-18258107 None:intergenic 45.0%
! TGATGTTGGCGTTGAGTTCT+GGG - chr7_4:18258100-18258119 None:intergenic 45.0%
CTTCAACAACCAAGACATGG+TGG - chr7_4:18258132-18258151 None:intergenic 45.0%
!! ATTTTGGGTAAAGGAGGAGG+AGG - chr7_4:18258199-18258218 None:intergenic 45.0%
GGCATTCCGAGAATTGAACT+CGG + chr7_4:18258514-18258533 Msa1143060:intron 45.0%
GCATTCCGAGAATTGAACTC+GGG + chr7_4:18258515-18258534 Msa1143060:intron 45.0%
ACAATGGGCATTTGGTCTAG+TGG - chr7_4:18258569-18258588 None:intergenic 45.0%
!! GAGAGCACCCTACAAAGTTA+AGG - chr7_4:18258802-18258821 None:intergenic 45.0%
AGTGCTTCACAGAGTCAAGA+GGG - chr7_4:18258987-18259006 None:intergenic 45.0%
TAGTGCTTCACAGAGTCAAG+AGG - chr7_4:18258988-18259007 None:intergenic 45.0%
! CAGTAGCCGACTTTAGTACA+CGG - chr7_4:18259483-18259502 None:intergenic 45.0%
GAAACTGTCTGTTAGGAACC+CGG + chr7_4:18259841-18259860 Msa1143060:intron 45.0%
AAACTGTCTGTTAGGAACCC+GGG + chr7_4:18259842-18259861 Msa1143060:intron 45.0%
TTAGGAACCCGGGAATTGAA+TGG + chr7_4:18259852-18259871 Msa1143060:intron 45.0%
ATTGTGAAGGGGAAAACCCT+TGG - chr7_4:18259932-18259951 None:intergenic 45.0%
GGAGATGTAAAGGAGTCCTT+TGG + chr7_4:18260323-18260342 Msa1143060:CDS 45.0%
! GATACTTTTCAGAGAGAGCG+AGG + chr7_4:18260875-18260894 Msa1143060:three_prime_UTR 45.0%
!!! TAATATTTTTAAATTTCTAA+TGG + chr7_4:18260489-18260508 Msa1143060:intron 5.0%
CGAGAGAATCTCGAAACGCA+TGG + chr7_4:18257976-18257995 Msa1143060:exon 50.0%
TGGAGAAGAGTGAGTCGTTG+TGG - chr7_4:18258063-18258082 None:intergenic 50.0%
! GATGTTGGCGTTGAGTTCTG+GGG - chr7_4:18258099-18258118 None:intergenic 50.0%
! GTGATGTTGGCGTTGAGTTC+TGG - chr7_4:18258101-18258120 None:intergenic 50.0%
CAACAACCAAGACATGGTGG+TGG - chr7_4:18258129-18258148 None:intergenic 50.0%
GAGGTCCCGAGTTCAATTCT+CGG - chr7_4:18258523-18258542 None:intergenic 50.0%
AGGAGAGAATCTCCACTCCA+AGG + chr7_4:18259912-18259931 Msa1143060:intron 50.0%
GGAGAGAATCTCCACTCCAA+GGG + chr7_4:18259913-18259932 Msa1143060:intron 50.0%
TGGTGTAGGAAGCTGCAAGT+TGG - chr7_4:18260261-18260280 None:intergenic 50.0%
TACTGCTACCGATGAGTCAG+AGG + chr7_4:18260364-18260383 Msa1143060:CDS 50.0%
GAGTGAGTCGTTGTGGAACC+TGG - chr7_4:18258056-18258075 None:intergenic 55.0%
!! CAACCAAGACATGGTGGTGG+TGG - chr7_4:18258126-18258145 None:intergenic 55.0%
ATTCTCGCTTAGGGTGCGAG+AGG - chr7_4:18258542-18258561 None:intergenic 55.0%
GAAGGGGAAAACCCTTGGAG+TGG - chr7_4:18259927-18259946 None:intergenic 55.0%
!! GGTGGTGGTGGTGGTGATGT+TGG - chr7_4:18258114-18258133 None:intergenic 60.0%
!! CCAAGACATGGTGGTGGTGG+TGG - chr7_4:18258123-18258142 None:intergenic 60.0%
CCACCACCACCACCATGTCT+TGG + chr7_4:18258120-18258139 Msa1143060:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 18257874 18261005 18257874 ID=Msa1143060;Name=Msa1143060
chr7_4 mRNA 18257874 18261005 18257874 ID=Msa1143060-mRNA-1;Parent=Msa1143060;Name=Msa1143060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=121|1|1|1|0.75|0.6|5|503|229
chr7_4 exon 18257874 18258405 18257874 ID=Msa1143060-mRNA-1:exon:3999;Parent=Msa1143060-mRNA-1
chr7_4 exon 18259442 18259528 18259442 ID=Msa1143060-mRNA-1:exon:4000;Parent=Msa1143060-mRNA-1
chr7_4 exon 18259632 18259679 18259632 ID=Msa1143060-mRNA-1:exon:4001;Parent=Msa1143060-mRNA-1
chr7_4 exon 18260269 18260448 18260269 ID=Msa1143060-mRNA-1:exon:4002;Parent=Msa1143060-mRNA-1
chr7_4 exon 18260539 18261005 18260539 ID=Msa1143060-mRNA-1:exon:4003;Parent=Msa1143060-mRNA-1
chr7_4 five_prime_UTR 18257874 18257994 18257874 ID=Msa1143060-mRNA-1:five_prime_utr;Parent=Msa1143060-mRNA-1
chr7_4 CDS 18257995 18258405 18257995 ID=Msa1143060-mRNA-1:cds;Parent=Msa1143060-mRNA-1
chr7_4 CDS 18259442 18259528 18259442 ID=Msa1143060-mRNA-1:cds;Parent=Msa1143060-mRNA-1
chr7_4 CDS 18259632 18259679 18259632 ID=Msa1143060-mRNA-1:cds;Parent=Msa1143060-mRNA-1
chr7_4 CDS 18260269 18260412 18260269 ID=Msa1143060-mRNA-1:cds;Parent=Msa1143060-mRNA-1
chr7_4 three_prime_UTR 18260413 18260448 18260413 ID=Msa1143060-mRNA-1:three_prime_utr;Parent=Msa1143060-mRNA-1
chr7_4 three_prime_UTR 18260539 18261005 18260539 ID=Msa1143060-mRNA-1:three_prime_utr;Parent=Msa1143060-mRNA-1
Gene Sequence

>Msa1143060

ATGGAAGTAGGAATGTCGTTGAACGCACTGATTCATCCACCACTATCAAGTTCAAGCTCCAGGTTCCACAACGACTCACTCTTCTCCATTCCAAGACAATTCCCCAGAACTCAACGCCAACATCACCACCACCACCACCATGTCTTGGTTGTTGAAGCAAAGGGTAAAAAAGGAATGATGTCTCGTCAATATCAACGTCAACCTCCTCCTCCTTTACCCAAAATTGAAGACGACGGTAATCCTAAATTCGTCGTCTTCATTCGTATGGCTAATGTTTATCTTTGGTATCCTCTTAGTATTGTTTCTGGTGGTACCACTGCTAAAATTATGGTTGCTGCTAAAGATAATTTTCTTGGCAAATTTATTTATAAGGATACTCTTGATCGAAATCTTGCTGCTGTTATCTACCGAGATGAGAAGGAGATACAGAAATCTGCATTCAAACAACACCGTGTACTAAAGTCGGCTACTGAATTCAGATATGGCTACAAACTTGTTGAGAATGGCAATGTAAAAGCTGCACTTTCTACCAGTGATGTTATTGAGCTTCCTACACCAGATAAACTAAAAACTGTAGCTGATAAAGTGAAAGACTTTTTCGGAGATGTAAAGGAGTCCTTTGGGGAAATAACATCGTTAGTTACTGCTACCGATGAGTCAGAGGAAGATTCAAAAGAAAAAACTAAGTGA

Protein sequence

>Msa1143060

MEVGMSLNALIHPPLSSSSSRFHNDSLFSIPRQFPRTQRQHHHHHHHVLVVEAKGKKGMMSRQYQRQPPPPLPKIEDDGNPKFVVFIRMANVYLWYPLSIVSGGTTAKIMVAAKDNFLGKFIYKDTLDRNLAAVIYRDEKEIQKSAFKQHRVLKSATEFRYGYKLVENGNVKAALSTSDVIELPTPDKLKTVADKVKDFFGDVKESFGEITSLVTATDESEEDSKEKTK*