AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1412740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412740 MtrunA17_Chr1g0193701 87.589 282 25 4 1 280 1 274 3.45e-176 486
Msa1412740 MtrunA17_Chr8g0384911 37.975 158 82 4 106 262 107 249 2.25e-20 90.9
Msa1412740 MtrunA17_Chr8g0384911 29.545 176 100 5 99 270 350 505 4.77e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412740 AT4G01650.2 60.204 196 72 3 84 275 16 209 7.25e-81 243
Msa1412740 AT4G01650.1 60.204 196 72 3 84 275 93 286 7.38e-80 243
Msa1412740 AT4G01650.3 64.885 131 42 2 84 212 93 221 6.75e-56 180
Msa1412740 AT5G08720.1 38.415 164 85 4 106 268 97 245 1.28e-22 97.8
Msa1412740 AT5G08720.1 27.717 184 111 4 99 280 328 491 1.25e-13 71.2

Find 82 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCCCTTACGGATTTA+AGG 0.163287 tig0023943:+69275 None:intergenic
CTGCAAGAGTCGAGCAAAAT+TGG 0.187080 tig0023943:+71917 None:intergenic
ATCATCATCGGTGTCGTTTA+AGG 0.240676 tig0023943:+72175 None:intergenic
AACGACACCGATGATGATTC+TGG 0.246364 tig0023943:-72170 Msa1412740:CDS
TTCAGCTCTTCGAAGGAAAA+TGG 0.305062 tig0023943:-70134 Msa1412740:CDS
AGGTTGGCTGATTTCATTCC+TGG 0.313493 tig0023943:-71972 Msa1412740:CDS
CTCAGTAAATTGATCCAAAA+AGG 0.327199 tig0023943:-71942 Msa1412740:CDS
CTAAAATATCTCCCAAGTTC+TGG 0.331036 tig0023943:-69106 Msa1412740:three_prime_UTR
GGAGAGCAGAACTTGGCATT+TGG 0.347544 tig0023943:-70264 Msa1412740:CDS
ACGCTTCACTTGATTCCATT+TGG 0.351261 tig0023943:-72016 Msa1412740:CDS
GAGAGCAGAACTTGGCATTT+GGG 0.357576 tig0023943:-70263 Msa1412740:CDS
AGAGAAGAAAAGGGTGGAAA+TGG 0.362769 tig0023943:+72295 None:intergenic
CGAAGATGTGGTTGCCCGTT+CGG 0.371633 tig0023943:-69336 Msa1412740:CDS
AGGAAAGTTTGCGTGGAAAC+TGG 0.376996 tig0023943:+72347 None:intergenic
TAATACAAGTAAAGTTCATT+TGG 0.385292 tig0023943:-69177 Msa1412740:three_prime_UTR
TCGGTGTCGTTTAAGGTGGT+TGG 0.404356 tig0023943:+72182 None:intergenic
CGGTGTCGTTTAAGGTGGTT+GGG 0.405611 tig0023943:+72183 None:intergenic
TCAGAGTCGTTGGTTGAAGA+TGG 0.419018 tig0023943:-72110 Msa1412740:CDS
TTTCTGAGCTTCACCCCTTA+CGG 0.425093 tig0023943:+69267 None:intergenic
TAAGGTGGTTGGGTTGTGTT+TGG 0.430644 tig0023943:+72193 None:intergenic
CTACCCTCTATCAGCCGAAC+GGG 0.437593 tig0023943:+69322 None:intergenic
GGGTTAAAATTTGATGCTAA+AGG 0.447148 tig0023943:-70243 Msa1412740:CDS
ATCAGTCAAGATATTCCAAA+TGG 0.452946 tig0023943:+72001 None:intergenic
TGATGATTCTGGGACTCTAT+TGG 0.453023 tig0023943:-72159 Msa1412740:CDS
TTTGGTGTCAATTCTCACTT+AGG 0.457581 tig0023943:-69159 Msa1412740:three_prime_UTR
CGAACGGGCAACCACATCTT+CGG 0.459917 tig0023943:+69337 None:intergenic
GTCGTGTTAATTTCTCGAAC+CGG 0.460132 tig0023943:+69385 None:intergenic
TGCATTATCAATTGTGGTTG+TGG 0.464495 tig0023943:-72463 Msa1412740:five_prime_UTR
TGCAAGAGTCGAGCAAAATT+GGG 0.469520 tig0023943:+71918 None:intergenic
GTTGCCCGTTCGGCTGATAG+AGG 0.471438 tig0023943:-69326 Msa1412740:CDS
CAGAGTCGTTGGTTGAAGAT+GGG 0.478415 tig0023943:-72109 Msa1412740:CDS
ATAGACTTCAAGATGATTGA+AGG 0.479763 tig0023943:-70162 Msa1412740:CDS
CTTGACTGATTATGAAAGGT+TGG 0.487454 tig0023943:-71988 Msa1412740:CDS
GAGGGTGTGAAATGAAAAGG+GGG 0.500049 tig0023943:+72269 None:intergenic
ACGACACCGATGATGATTCT+GGG 0.503280 tig0023943:-72169 Msa1412740:CDS
GTGTGGTCCAGTCCAGAACT+TGG 0.506799 tig0023943:+69094 None:intergenic
AAAAGAACCTTAAATCCGTA+AGG 0.508599 tig0023943:-69282 Msa1412740:CDS
GCATTATCAATTGTGGTTGT+GGG 0.509291 tig0023943:-72462 Msa1412740:five_prime_UTR
GTGAGGGTGTGAAATGAAAA+GGG 0.510813 tig0023943:+72267 None:intergenic
GGTGAGGGTGTGAAATGAAA+AGG 0.512236 tig0023943:+72266 None:intergenic
GAAATGGAAGCCGGTGGTGA+TGG 0.514183 tig0023943:+72311 None:intergenic
ATATCTCCCAAGTTCTGGAC+TGG 0.517727 tig0023943:-69101 Msa1412740:three_prime_UTR
AGTTGAAGATTCAGAGTCGT+TGG 0.518855 tig0023943:-72120 Msa1412740:CDS
GAATTGGAGACTCTTCCATC+TGG 0.520472 tig0023943:-70198 Msa1412740:CDS
TTAACCTGCATTATCAATTG+TGG 0.521133 tig0023943:-72469 Msa1412740:five_prime_UTR
TGAGGGTGTGAAATGAAAAG+GGG 0.522808 tig0023943:+72268 None:intergenic
ACAAGAGAAAGAGAATATAC+AGG 0.525886 tig0023943:-72409 Msa1412740:five_prime_UTR
TGGAAGTTGTGAGGACTCTC+CGG 0.533175 tig0023943:-69404 Msa1412740:CDS
ACAGATTGGAGAGCAGAACT+TGG 0.540322 tig0023943:-70271 Msa1412740:intron
CCCTCTTCAACCATCACCAC+CGG 0.549271 tig0023943:-72321 Msa1412740:CDS
AAAGAACCTTAAATCCGTAA+GGG 0.553093 tig0023943:-69281 Msa1412740:CDS
GATGTTTAACGAACATGACT+TGG 0.555776 tig0023943:+72244 None:intergenic
TAGACTTCAAGATGATTGAA+GGG 0.561714 tig0023943:-70161 Msa1412740:CDS
GCCGGTGGTGATGGTTGAAG+AGG 0.565263 tig0023943:+72320 None:intergenic
ATTCACGCAGAATTGAGTCT+AGG 0.570895 tig0023943:-72049 Msa1412740:CDS
AGAGTCGTTGGTTGAAGATG+GGG 0.585019 tig0023943:-72108 Msa1412740:CDS
AGGGAGTAGGAAAGTTTGCG+TGG 0.586983 tig0023943:+72340 None:intergenic
ATCATCGGTGTCGTTTAAGG+TGG 0.588547 tig0023943:+72178 None:intergenic
TTGGAAGCGCGATACAAAGA+AGG 0.590076 tig0023943:+72212 None:intergenic
TTGCCCGTTCGGCTGATAGA+GGG 0.591142 tig0023943:-69325 Msa1412740:CDS
ATGTCACGCTTCATACCAGA+TGG 0.591702 tig0023943:+70183 None:intergenic
AACGAACATGACTTGGGTGA+GGG 0.599864 tig0023943:+72251 None:intergenic
ATATCTTGACTGATTATGAA+AGG 0.602548 tig0023943:-71992 Msa1412740:CDS
AAAAGGGTGGAAATGGAAGC+CGG 0.605384 tig0023943:+72302 None:intergenic
ATGTTTAACGAACATGACTT+GGG 0.610648 tig0023943:+72245 None:intergenic
ACAACCACAATTGATAATGC+AGG 0.610655 tig0023943:+72465 None:intergenic
AGACTTCAAGATGATTGAAG+GGG 0.615498 tig0023943:-70160 Msa1412740:CDS
AATTTACTGAGGGCAAGACC+AGG 0.620856 tig0023943:+71954 None:intergenic
AAGAACCTTAAATCCGTAAG+GGG 0.627039 tig0023943:-69280 Msa1412740:CDS
CCGGTGGTGATGGTTGAAGA+GGG 0.627951 tig0023943:+72321 None:intergenic
TAACGAACATGACTTGGGTG+AGG 0.630441 tig0023943:+72250 None:intergenic
TGTGGTCCAGTCCAGAACTT+GGG 0.631356 tig0023943:+69095 None:intergenic
GTGATGGTTGAAGAGGGAGT+AGG 0.631455 tig0023943:+72327 None:intergenic
TCTACCCTCTATCAGCCGAA+CGG 0.635039 tig0023943:+69321 None:intergenic
TTTCAGCGATGGAAGTTGTG+AGG 0.646341 tig0023943:-69413 Msa1412740:CDS
TAGAGTCCCAGAATCATCAT+CGG 0.656535 tig0023943:+72163 None:intergenic
GGGGTGAGAGAAGAAAAGGG+TGG 0.670192 tig0023943:+72289 None:intergenic
TGGGACTCTATTGGTGACAG+AGG 0.685716 tig0023943:-72150 Msa1412740:CDS
TTGATGTTAAGCCGAAGATG+TGG 0.693995 tig0023943:-69348 Msa1412740:CDS
ATCTTTGACTCAATCAACGT+AGG 0.697511 tig0023943:+72512 None:intergenic
AGGGTGTGAAATGAAAAGGG+GGG 0.736177 tig0023943:+72270 None:intergenic
AGGGTGGAAATGGAAGCCGG+TGG 0.769057 tig0023943:+72305 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTCATTTTTTATTAAT+CGG - tig0023943:69833-69852 Msa1412740:intron 10.0%
!!! CTTTTCATTTTTTATTAATC+GGG - tig0023943:69834-69853 Msa1412740:intron 15.0%
!! TAATCTTTAATATGGATAAT+GGG + tig0023943:70012-70031 None:intergenic 15.0%
!! ATAATCTTTAATATGGATAA+TGG + tig0023943:70013-70032 None:intergenic 15.0%
!! AATACACATAATCTTTAATA+TGG + tig0023943:70020-70039 None:intergenic 15.0%
!! ATATTAAAGATTATGTGTAT+TGG - tig0023943:70019-70038 Msa1412740:intron 15.0%
!!! ACTTGATTTTATTAAATTCA+CGG - tig0023943:70182-70201 Msa1412740:CDS 15.0%
!! TTGTTTATATTGCAAATTTA+GGG + tig0023943:70460-70479 None:intergenic 15.0%
!! TTTGTTTATATTGCAAATTT+AGG + tig0023943:70461-70480 None:intergenic 15.0%
!!! ATTGTTATTTTCATCAAATA+CGG - tig0023943:70573-70592 Msa1412740:intron 15.0%
!! TAAGAAGAAGAAAAAAAAAT+AGG - tig0023943:70702-70721 Msa1412740:intron 15.0%
!!! ATTTTCTTGAAAAGTAAATT+TGG - tig0023943:71283-71302 Msa1412740:intron 15.0%
!! TCGAAAACAAAATAAAAATA+AGG + tig0023943:71695-71714 None:intergenic 15.0%
!! TTGTAATTAAAAGTAAAAAC+AGG - tig0023943:71813-71832 Msa1412740:intron 15.0%
!!! TTATGTAAATTTTAGAAACT+AGG + tig0023943:71880-71899 None:intergenic 15.0%
!! TAAAATTTACATAAACTTAG+TGG - tig0023943:71886-71905 Msa1412740:intron 15.0%
!!! TAGGAATTACTCTAATTTTT+TGG + tig0023943:69969-69988 None:intergenic 20.0%
!! ATTCTAGATATAAAAGTAGT+AGG - tig0023943:70207-70226 Msa1412740:CDS 20.0%
!!! AAACTGTATAGTTCTAAATA+GGG - tig0023943:70303-70322 Msa1412740:intron 20.0%
!!! AAATGCTGTATTTTATAGTT+TGG - tig0023943:70401-70420 Msa1412740:intron 20.0%
!!! TATGTTTTAGCATTTAAAAC+CGG + tig0023943:70612-70631 None:intergenic 20.0%
!!! AGGATATGATTTTGAATATT+AGG - tig0023943:71067-71086 Msa1412740:intron 20.0%
!! GGTTAAAATTAAACTGTATA+TGG - tig0023943:71088-71107 Msa1412740:intron 20.0%
!!! AAATAAGGTATCATTTAAAG+AGG + tig0023943:71680-71699 None:intergenic 20.0%
!! TGGTGAAAATAATGAAAAAT+TGG + tig0023943:71740-71759 None:intergenic 20.0%
!!! ACAATTTTTTAAACCAAACA+TGG - tig0023943:71853-71872 Msa1412740:intron 20.0%
!! AATTGCACATATTGAAAATT+GGG + tig0023943:72064-72083 None:intergenic 20.0%
!! TAATACAAGTAAAGTTCATT+TGG - tig0023943:72434-72453 Msa1412740:five_prime_UTR 20.0%
! ATATCTTGACTGATTATGAA+AGG - tig0023943:69619-69638 Msa1412740:intron 25.0%
!! TTTTTGGATCAATTTACTGA+GGG + tig0023943:69670-69689 None:intergenic 25.0%
! ATATTGTATTAGTGTTGTGT+TGG - tig0023943:69800-69819 Msa1412740:intron 25.0%
! TATTGTATTAGTGTTGTGTT+GGG - tig0023943:69801-69820 Msa1412740:intron 25.0%
!!! TTCATTTTTTATTAATCGGG+CGG - tig0023943:69837-69856 Msa1412740:intron 25.0%
! AATAATACAACCTAGAAAGT+AGG + tig0023943:69988-70007 None:intergenic 25.0%
! TAGATATAAAAGTAGTAGGA+AGG - tig0023943:70211-70230 Msa1412740:CDS 25.0%
! AGATATAAAAGTAGTAGGAA+GGG - tig0023943:70212-70231 Msa1412740:CDS 25.0%
!! TTAGAACTATACAGTTTGTT+TGG + tig0023943:70300-70319 None:intergenic 25.0%
!!! CAAACTGTATAGTTCTAAAT+AGG - tig0023943:70302-70321 Msa1412740:intron 25.0%
!!! AACAAAAGTCTTATTGATTG+AGG - tig0023943:70475-70494 Msa1412740:intron 25.0%
!!! ACAAAAGTCTTATTGATTGA+GGG - tig0023943:70476-70495 Msa1412740:intron 25.0%
!! GTTTTCAATTCAATGTAGTT+TGG - tig0023943:70516-70535 Msa1412740:intron 25.0%
! TTAAAATAAAAAGCCACTCA+TGG + tig0023943:70790-70809 None:intergenic 25.0%
! TATGATTTCCATATATGTCA+TGG - tig0023943:70872-70891 Msa1412740:intron 25.0%
! TAACTATACCTTTAAACTGT+GGG - tig0023943:70937-70956 Msa1412740:intron 25.0%
! TAACTTGGAGAAAGTAAATT+AGG + tig0023943:71178-71197 None:intergenic 25.0%
!! CATTGAATTTCTAAAGGTTA+AGG + tig0023943:71204-71223 None:intergenic 25.0%
!! CTTAACCTTTAGAAATTCAA+TGG - tig0023943:71202-71221 Msa1412740:intron 25.0%
!!! AGATTGTTTTGAGAAAGAAT+TGG - tig0023943:71397-71416 Msa1412740:intron 25.0%
!!! TTGGATTTTTAGAACTGAAT+AGG - tig0023943:71632-71651 Msa1412740:intron 25.0%
! AAAAACAGGAGTTGAAAATT+AGG - tig0023943:71827-71846 Msa1412740:intron 25.0%
! ATTGCACATATTGAAAATTG+GGG + tig0023943:72063-72082 None:intergenic 25.0%
! CAATTGCACATATTGAAAAT+TGG + tig0023943:72065-72084 None:intergenic 25.0%
!!! ATTACATTTTGAAACCATGT+AGG - tig0023943:72110-72129 Msa1412740:CDS 25.0%
TTAACCTGCATTATCAATTG+TGG - tig0023943:69142-69161 Msa1412740:three_prime_UTR 30.0%
ACAAGAGAAAGAGAATATAC+AGG - tig0023943:69202-69221 Msa1412740:three_prime_UTR 30.0%
ATGTTTAACGAACATGACTT+GGG + tig0023943:69369-69388 None:intergenic 30.0%
ATCAGTCAAGATATTCCAAA+TGG + tig0023943:69613-69632 None:intergenic 30.0%
! CTTTTTGGATCAATTTACTG+AGG + tig0023943:69671-69690 None:intergenic 30.0%
CTCAGTAAATTGATCCAAAA+AGG - tig0023943:69669-69688 Msa1412740:intron 30.0%
!!! TCATTTTTTATTAATCGGGC+GGG - tig0023943:69838-69857 Msa1412740:intron 30.0%
ATATCAACATTGTTGAGCTA+GGG + tig0023943:69887-69906 None:intergenic 30.0%
AATATCAACATTGTTGAGCT+AGG + tig0023943:69888-69907 None:intergenic 30.0%
TAGAGTAATTCCTACTTTCT+AGG - tig0023943:69975-69994 Msa1412740:intron 30.0%
GATATAAAAGTAGTAGGAAG+GGG - tig0023943:70213-70232 Msa1412740:CDS 30.0%
TTGACATAAAATGACCTTGT+TGG + tig0023943:70254-70273 None:intergenic 30.0%
!!! TTGGTTTTGCTTCTTTGTAA+TGG - tig0023943:70420-70439 Msa1412740:intron 30.0%
! TATATTGCAAATTTAGGGCA+AGG + tig0023943:70455-70474 None:intergenic 30.0%
!! CAAAAGTCTTATTGATTGAG+GGG - tig0023943:70477-70496 Msa1412740:intron 30.0%
TTCTTATCTACTCTAGTATG+AGG + tig0023943:70688-70707 None:intergenic 30.0%
ATAGGTCAACATGATTATGT+TGG - tig0023943:70720-70739 Msa1412740:intron 30.0%
TGCTTTAACAGTAACACTTT+AGG + tig0023943:70760-70779 None:intergenic 30.0%
! AAGTGTTACTGTTAAAGCAT+AGG - tig0023943:70761-70780 Msa1412740:intron 30.0%
ATGATTATATGCCATGAAGT+AGG + tig0023943:70826-70845 None:intergenic 30.0%
CATAACTTCCATGACATATA+TGG + tig0023943:70883-70902 None:intergenic 30.0%
GTAACTATACCTTTAAACTG+TGG - tig0023943:70936-70955 Msa1412740:intron 30.0%
TAAAGGTTAAGGTTGTAACT+TGG + tig0023943:71193-71212 None:intergenic 30.0%
! TTTTTCCCTGTTCGTAAATT+TGG - tig0023943:71252-71271 Msa1412740:intron 30.0%
TCAAACCAAATTTACGAACA+GGG + tig0023943:71260-71279 None:intergenic 30.0%
TTCAAACCAAATTTACGAAC+AGG + tig0023943:71261-71280 None:intergenic 30.0%
GTTCCATTATCTTAACAGAT+TGG - tig0023943:71326-71345 Msa1412740:intron 30.0%
TCTCCAATCTGTTAAGATAA+TGG + tig0023943:71332-71351 None:intergenic 30.0%
GGGTTAAAATTTGATGCTAA+AGG - tig0023943:71368-71387 Msa1412740:intron 30.0%
ATAGACTTCAAGATGATTGA+AGG - tig0023943:71449-71468 Msa1412740:intron 30.0%
TAGACTTCAAGATGATTGAA+GGG - tig0023943:71450-71469 Msa1412740:intron 30.0%
CAGAAGAATTCTAATAAGAG+GGG + tig0023943:71533-71552 None:intergenic 30.0%
CCAGAAGAATTCTAATAAGA+GGG + tig0023943:71534-71553 None:intergenic 30.0%
TCCAGAAGAATTCTAATAAG+AGG + tig0023943:71535-71554 None:intergenic 30.0%
!! CGCAAGTATTTTTCAAATGT+TGG - tig0023943:71613-71632 Msa1412740:intron 30.0%
!! TTTTGGTAACCAACTACAAA+TGG - tig0023943:71925-71944 Msa1412740:CDS 30.0%
AAAAGAACCTTAAATCCGTA+AGG - tig0023943:72329-72348 Msa1412740:CDS 30.0%
AAAGAACCTTAAATCCGTAA+GGG - tig0023943:72330-72349 Msa1412740:CDS 30.0%
! AGAACTTGGGAGATATTTTA+GGG + tig0023943:72506-72525 None:intergenic 30.0%
ATCTTTGACTCAATCAACGT+AGG + tig0023943:69102-69121 None:intergenic 35.0%
!! ACAACCACAATTGATAATGC+AGG + tig0023943:69149-69168 None:intergenic 35.0%
TGCATTATCAATTGTGGTTG+TGG - tig0023943:69148-69167 Msa1412740:three_prime_UTR 35.0%
GCATTATCAATTGTGGTTGT+GGG - tig0023943:69149-69168 Msa1412740:three_prime_UTR 35.0%
GATGTTTAACGAACATGACT+TGG + tig0023943:69370-69389 None:intergenic 35.0%
CTTGACTGATTATGAAAGGT+TGG - tig0023943:69623-69642 Msa1412740:intron 35.0%
TCTTGCAGGTATAATGCAAT+TGG - tig0023943:69709-69728 Msa1412740:intron 35.0%
CTTGCAGGTATAATGCAATT+GGG - tig0023943:69710-69729 Msa1412740:intron 35.0%
TTGCAGGTATAATGCAATTG+GGG - tig0023943:69711-69730 Msa1412740:intron 35.0%
TAAGTTAGACACATTCACTC+AGG - tig0023943:69910-69929 Msa1412740:intron 35.0%
!! TTTTTGGTCTGTAAACGAAG+TGG + tig0023943:69953-69972 None:intergenic 35.0%
TATGTGTATTGGACACAACA+CGG - tig0023943:70030-70049 Msa1412740:intron 35.0%
GTTTAGTTGCATGCTTGATT+TGG - tig0023943:70086-70105 Msa1412740:intron 35.0%
ACATAAAATGACCTTGTTGG+TGG + tig0023943:70251-70270 None:intergenic 35.0%
! AAATTTAGGGCAAGGTCATA+AGG + tig0023943:70447-70466 None:intergenic 35.0%
TTATCTACTCTAGTATGAGG+TGG + tig0023943:70685-70704 None:intergenic 35.0%
AGTTATGTATGCATCAATCG+TGG - tig0023943:70896-70915 Msa1412740:intron 35.0%
GTTATGTATGCATCAATCGT+GGG - tig0023943:70897-70916 Msa1412740:intron 35.0%
!!! GTTTTTTGTGACAGATAGAC+AGG - tig0023943:71047-71066 Msa1412740:intron 35.0%
AGACTTCAAGATGATTGAAG+GGG - tig0023943:71451-71470 Msa1412740:intron 35.0%
! AGGAAAATGGTCTATTTTGC+AGG - tig0023943:71490-71509 Msa1412740:intron 35.0%
! AAATGGTCTATTTTGCAGGT+AGG - tig0023943:71494-71513 Msa1412740:intron 35.0%
CCCTCTTATTAGAATTCTTC+TGG - tig0023943:71531-71550 Msa1412740:intron 35.0%
! AGTTTGCATGGTTTTTATGC+TGG + tig0023943:71559-71578 None:intergenic 35.0%
! ATTTTCACCATTTCCTATGC+TGG - tig0023943:71750-71769 Msa1412740:intron 35.0%
TTAGAAACTAGGACCATGTT+TGG + tig0023943:71869-71888 None:intergenic 35.0%
!!! GATTCTAGCTAGCGTTTTTT+TGG - tig0023943:71908-71927 Msa1412740:intron 35.0%
AAATGGAGTGCATCTTATCT+TGG - tig0023943:71942-71961 Msa1412740:CDS 35.0%
! TATTCAGGTTATTGACCAAG+TGG - tig0023943:71977-71996 Msa1412740:CDS 35.0%
! ATTCAGGTTATTGACCAAGT+GGG - tig0023943:71978-71997 Msa1412740:CDS 35.0%
ATCATAATCACAATCCCACT+TGG + tig0023943:71995-72014 None:intergenic 35.0%
CACATATTGAAAATTGGGGA+AGG + tig0023943:72059-72078 None:intergenic 35.0%
! ACTTGTTGAATACTCCTACA+TGG + tig0023943:72127-72146 None:intergenic 35.0%
AAGAACCTTAAATCCGTAAG+GGG - tig0023943:72331-72350 Msa1412740:CDS 35.0%
!! TTTGGTGTCAATTCTCACTT+AGG - tig0023943:72452-72471 Msa1412740:five_prime_UTR 35.0%
!! GAACTTGGGAGATATTTTAG+GGG + tig0023943:72505-72524 None:intergenic 35.0%
! CAGAACTTGGGAGATATTTT+AGG + tig0023943:72507-72526 None:intergenic 35.0%
CTAAAATATCTCCCAAGTTC+TGG - tig0023943:72505-72524 Msa1412740:five_prime_UTR 35.0%
AGAGAAGAAAAGGGTGGAAA+TGG + tig0023943:69319-69338 None:intergenic 40.0%
! TGAGGGTGTGAAATGAAAAG+GGG + tig0023943:69346-69365 None:intergenic 40.0%
! GTGAGGGTGTGAAATGAAAA+GGG + tig0023943:69347-69366 None:intergenic 40.0%
!! ATCATCATCGGTGTCGTTTA+AGG + tig0023943:69439-69458 None:intergenic 40.0%
TAGAGTCCCAGAATCATCAT+CGG + tig0023943:69451-69470 None:intergenic 40.0%
!! TGATGATTCTGGGACTCTAT+TGG - tig0023943:69452-69471 Msa1412740:intron 40.0%
AGTTGAAGATTCAGAGTCGT+TGG - tig0023943:69491-69510 Msa1412740:intron 40.0%
ATTCACGCAGAATTGAGTCT+AGG - tig0023943:69562-69581 Msa1412740:intron 40.0%
ACGCTTCACTTGATTCCATT+TGG - tig0023943:69595-69614 Msa1412740:intron 40.0%
! GAGCAAAATTGGGACCTTTT+TGG + tig0023943:69686-69705 None:intergenic 40.0%
TGCAAGAGTCGAGCAAAATT+GGG + tig0023943:69696-69715 None:intergenic 40.0%
!! CATGCTTGATTTGGCAAGTT+TGG - tig0023943:70095-70114 Msa1412740:intron 40.0%
!! GGTAACTTCTAGTTTGCTCA+GGG + tig0023943:70279-70298 None:intergenic 40.0%
!! TGGTAACTTCTAGTTTGCTC+AGG + tig0023943:70280-70299 None:intergenic 40.0%
TTAGATGCAGCCACTGTATT+AGG + tig0023943:70334-70353 None:intergenic 40.0%
! AGCATTTAAAACCGGTCCAA+CGG + tig0023943:70604-70623 None:intergenic 40.0%
! ATGTGAAGCATCCTACTTCA+TGG - tig0023943:70812-70831 Msa1412740:intron 40.0%
TCAGTACTCCCACAGTTTAA+AGG + tig0023943:70948-70967 None:intergenic 40.0%
TCCAAGCAATACACATCAGT+TGG - tig0023943:70985-71004 Msa1412740:intron 40.0%
ACCAACTGATGTGTATTGCT+TGG + tig0023943:70989-71008 None:intergenic 40.0%
CATCATAGCATAGCCAAGTA+TGG - tig0023943:71119-71138 Msa1412740:intron 40.0%
! CCTTTAGAAATTCAATGGCG+CGG - tig0023943:71207-71226 Msa1412740:intron 40.0%
TTCAGCTCTTCGAAGGAAAA+TGG - tig0023943:71477-71496 Msa1412740:intron 40.0%
! CAGAGAAGTGCATAAAACTC+TGG + tig0023943:71590-71609 None:intergenic 40.0%
AGATGCACTCCATTTGTAGT+TGG + tig0023943:71937-71956 None:intergenic 40.0%
TGGAAAGTCTGCGATTATTC+AGG - tig0023943:71962-71981 Msa1412740:CDS 40.0%
GCTAACATCCTAGACAATGA+TGG - tig0023943:72165-72184 Msa1412740:CDS 40.0%
CTGCAAAACCATCATTGTCT+AGG + tig0023943:72176-72195 None:intergenic 40.0%
GTCGTGTTAATTTCTCGAAC+CGG + tig0023943:72229-72248 None:intergenic 40.0%
TTGATGTTAAGCCGAAGATG+TGG - tig0023943:72263-72282 Msa1412740:CDS 40.0%
!! GATATTTTAGGGGCGGAATA+TGG + tig0023943:72495-72514 None:intergenic 40.0%
AGGAAAGTTTGCGTGGAAAC+TGG + tig0023943:69267-69286 None:intergenic 45.0%
AAAAGGGTGGAAATGGAAGC+CGG + tig0023943:69312-69331 None:intergenic 45.0%
AGGGTGTGAAATGAAAAGGG+GGG + tig0023943:69344-69363 None:intergenic 45.0%
! GAGGGTGTGAAATGAAAAGG+GGG + tig0023943:69345-69364 None:intergenic 45.0%
! GGTGAGGGTGTGAAATGAAA+AGG + tig0023943:69348-69367 None:intergenic 45.0%
! AACGAACATGACTTGGGTGA+GGG + tig0023943:69363-69382 None:intergenic 45.0%
! TAACGAACATGACTTGGGTG+AGG + tig0023943:69364-69383 None:intergenic 45.0%
! TTGGAAGCGCGATACAAAGA+AGG + tig0023943:69402-69421 None:intergenic 45.0%
! TAAGGTGGTTGGGTTGTGTT+TGG + tig0023943:69421-69440 None:intergenic 45.0%
!! ATCATCGGTGTCGTTTAAGG+TGG + tig0023943:69436-69455 None:intergenic 45.0%
AACGACACCGATGATGATTC+TGG - tig0023943:69441-69460 Msa1412740:intron 45.0%
ACGACACCGATGATGATTCT+GGG - tig0023943:69442-69461 Msa1412740:intron 45.0%
! TCAGAGTCGTTGGTTGAAGA+TGG - tig0023943:69501-69520 Msa1412740:intron 45.0%
! CAGAGTCGTTGGTTGAAGAT+GGG - tig0023943:69502-69521 Msa1412740:intron 45.0%
! AGAGTCGTTGGTTGAAGATG+GGG - tig0023943:69503-69522 Msa1412740:intron 45.0%
! AGGTTGGCTGATTTCATTCC+TGG - tig0023943:69639-69658 Msa1412740:intron 45.0%
AATTTACTGAGGGCAAGACC+AGG + tig0023943:69660-69679 None:intergenic 45.0%
CTGCAAGAGTCGAGCAAAAT+TGG + tig0023943:69697-69716 None:intergenic 45.0%
! CAATTTTGCTCGACTCTTGC+AGG - tig0023943:69695-69714 Msa1412740:intron 45.0%
TAAACGAAGTGGCAAGCACA+AGG + tig0023943:69942-69961 None:intergenic 45.0%
TCACGAGGAACTGTGCTATA+AGG - tig0023943:70056-70075 Msa1412740:intron 45.0%
! AATGACCTTGTTGGTGGATG+AGG + tig0023943:70245-70264 None:intergenic 45.0%
TAGGGACCTTCCTAATACAG+TGG - tig0023943:70321-70340 Msa1412740:intron 45.0%
ATGCAGCCACTGTATTAGGA+AGG + tig0023943:70330-70349 None:intergenic 45.0%
ATCAAATACGGTCAGTCCGT+TGG - tig0023943:70585-70604 Msa1412740:intron 45.0%
ACTCTAGTATGAGGTGGTTG+TGG + tig0023943:70679-70698 None:intergenic 45.0%
ATGTATGCATCAATCGTGGG+TGG - tig0023943:70900-70919 Msa1412740:intron 45.0%
!! AACTGTGGGAGTACTGATCT+TGG - tig0023943:70951-70970 Msa1412740:intron 45.0%
CCTTGCAGCAAAACCATACT+TGG + tig0023943:71135-71154 None:intergenic 45.0%
!! CCAAGTATGGTTTTGCTGCA+AGG - tig0023943:71132-71151 Msa1412740:intron 45.0%
CCGCGCCATTGAATTTCTAA+AGG + tig0023943:71210-71229 None:intergenic 45.0%
ACAGATTGGAGAGCAGAACT+TGG - tig0023943:71340-71359 Msa1412740:intron 45.0%
GAGAGCAGAACTTGGCATTT+GGG - tig0023943:71348-71367 Msa1412740:intron 45.0%
GAATTGGAGACTCTTCCATC+TGG - tig0023943:71413-71432 Msa1412740:intron 45.0%
ATGTCACGCTTCATACCAGA+TGG + tig0023943:71431-71450 None:intergenic 45.0%
! ACCATTTCCTATGCTGGTCT+TGG - tig0023943:71756-71775 Msa1412740:intron 45.0%
TCCAAGACCAGCATAGGAAA+TGG + tig0023943:71760-71779 None:intergenic 45.0%
! GTGTTTTCCAAGACCAGCAT+AGG + tig0023943:71766-71785 None:intergenic 45.0%
! GTTTTGCAGACTTTCAGCGA+TGG - tig0023943:72187-72206 Msa1412740:CDS 45.0%
TTTCAGCGATGGAAGTTGTG+AGG - tig0023943:72198-72217 Msa1412740:CDS 45.0%
CTTCACCCCTTACGGATTTA+AGG + tig0023943:72339-72358 None:intergenic 45.0%
TTTCTGAGCTTCACCCCTTA+CGG + tig0023943:72347-72366 None:intergenic 45.0%
!! CTTGGGAGATATTTTAGGGG+CGG + tig0023943:72502-72521 None:intergenic 45.0%
!! ATATCTCCCAAGTTCTGGAC+TGG - tig0023943:72510-72529 Msa1412740:five_prime_UTR 45.0%
AGGGAGTAGGAAAGTTTGCG+TGG + tig0023943:69274-69293 None:intergenic 50.0%
GTGATGGTTGAAGAGGGAGT+AGG + tig0023943:69287-69306 None:intergenic 50.0%
AGGGGGGTGAGAGAAGAAAA+GGG + tig0023943:69328-69347 None:intergenic 50.0%
AAGGGGGGTGAGAGAAGAAA+AGG + tig0023943:69329-69348 None:intergenic 50.0%
!! CGGTGTCGTTTAAGGTGGTT+GGG + tig0023943:69431-69450 None:intergenic 50.0%
!! TCGGTGTCGTTTAAGGTGGT+TGG + tig0023943:69432-69451 None:intergenic 50.0%
! TGGGACTCTATTGGTGACAG+AGG - tig0023943:69461-69480 Msa1412740:intron 50.0%
TTCCTCCTCATCCACCAACA+AGG - tig0023943:70237-70256 Msa1412740:CDS 50.0%
GGCGTCTATTAGGGTAATGC+AGG + tig0023943:70636-70655 None:intergenic 50.0%
GTGGTTGTGGGCGTCTATTA+GGG + tig0023943:70645-70664 None:intergenic 50.0%
AGTGGTTGTGGGCGTCTATT+AGG + tig0023943:70646-70665 None:intergenic 50.0%
TAATAGACGCCCACAACCAC+TGG - tig0023943:70645-70664 Msa1412740:intron 50.0%
CTAGTATGAGGTGGTTGTGG+TGG + tig0023943:70676-70695 None:intergenic 50.0%
AAAGCATAGGCGTCCATGAG+TGG - tig0023943:70774-70793 Msa1412740:intron 50.0%
TATGCATCAATCGTGGGTGG+TGG - tig0023943:70903-70922 Msa1412740:intron 50.0%
GGAGAGCAGAACTTGGCATT+TGG - tig0023943:71347-71366 Msa1412740:intron 50.0%
! GGGGATTTTCAGCTCTTCGA+AGG - tig0023943:71470-71489 Msa1412740:intron 50.0%
TGGAAGTTGTGAGGACTCTC+CGG - tig0023943:72207-72226 Msa1412740:CDS 50.0%
TCTACCCTCTATCAGCCGAA+CGG + tig0023943:72293-72312 None:intergenic 50.0%
!! CCGGTGGTGATGGTTGAAGA+GGG + tig0023943:69293-69312 None:intergenic 55.0%
CCCTCTTCAACCATCACCAC+CGG - tig0023943:69290-69309 Msa1412740:CDS 55.0%
GAAATGGAAGCCGGTGGTGA+TGG + tig0023943:69303-69322 None:intergenic 55.0%
GGGGTGAGAGAAGAAAAGGG+TGG + tig0023943:69325-69344 None:intergenic 55.0%
! GACCTTGTTGGTGGATGAGG+AGG + tig0023943:70242-70261 None:intergenic 55.0%
ATACGGTCAGTCCGTTGGAC+CGG - tig0023943:70590-70609 Msa1412740:intron 55.0%
! CTGGTTTGCGCGAGTTTGCA+TGG + tig0023943:71571-71590 None:intergenic 55.0%
CGAACGGGCAACCACATCTT+CGG + tig0023943:72277-72296 None:intergenic 55.0%
CGAAGATGTGGTTGCCCGTT+CGG - tig0023943:72275-72294 Msa1412740:CDS 55.0%
TTGCCCGTTCGGCTGATAGA+GGG - tig0023943:72286-72305 Msa1412740:CDS 55.0%
CTACCCTCTATCAGCCGAAC+GGG + tig0023943:72292-72311 None:intergenic 55.0%
!! GCCGGTGGTGATGGTTGAAG+AGG + tig0023943:69294-69313 None:intergenic 60.0%
AGGGTGGAAATGGAAGCCGG+TGG + tig0023943:69309-69328 None:intergenic 60.0%
GACACAACACGGCTCTCACG+AGG - tig0023943:70041-70060 Msa1412740:intron 60.0%
GTGGCTACGCCAGTGGTTGT+GGG + tig0023943:70657-70676 None:intergenic 60.0%
GTTGCCCGTTCGGCTGATAG+AGG - tig0023943:72285-72304 Msa1412740:CDS 60.0%
GGTGGCTACGCCAGTGGTTG+TGG + tig0023943:70658-70677 None:intergenic 65.0%
GGTTGTGGTGGCTACGCCAG+TGG + tig0023943:70664-70683 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0023943 gene 69099 72534 69099 ID=Msa1412740;Name=Msa1412740
tig0023943 mRNA 69099 72534 69099 ID=Msa1412740-mRNA-1;Parent=Msa1412740;Name=Msa1412740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=153|1|1|1|1|1|3|129|280
tig0023943 exon 69099 69437 69099 ID=Msa1412740-mRNA-1:exon:20750;Parent=Msa1412740-mRNA-1
tig0023943 exon 70122 70289 70122 ID=Msa1412740-mRNA-1:exon:20749;Parent=Msa1412740-mRNA-1
tig0023943 exon 71917 72534 71917 ID=Msa1412740-mRNA-1:exon:20748;Parent=Msa1412740-mRNA-1
tig0023943 five_prime_UTR 72382 72534 72382 ID=Msa1412740-mRNA-1:five_prime_utr;Parent=Msa1412740-mRNA-1
tig0023943 CDS 71917 72381 71917 ID=Msa1412740-mRNA-1:cds;Parent=Msa1412740-mRNA-1
tig0023943 CDS 70122 70289 70122 ID=Msa1412740-mRNA-1:cds;Parent=Msa1412740-mRNA-1
tig0023943 CDS 69228 69437 69228 ID=Msa1412740-mRNA-1:cds;Parent=Msa1412740-mRNA-1
tig0023943 three_prime_UTR 69099 69227 69099 ID=Msa1412740-mRNA-1:three_prime_utr;Parent=Msa1412740-mRNA-1
Gene Sequence

>Msa1412740

ATGCGCGCGATTCCAGTTTCCACGCAAACTTTCCTACTCCCTCTTCAACCATCACCACCGGCTTCCATTTCCACCCTTTTCTTCTCTCACCCCCCTTTTCATTTCACACCCTCACCCAAGTCATGTTCGTTAAACATCAACTTTACTCCTTCTTTGTATCGCGCTTCCAAACACAACCCAACCACCTTAAACGACACCGATGATGATTCTGGGACTCTATTGGTGACAGAGGATGATGAAGTTGAAGATTCAGAGTCGTTGGTTGAAGATGGGGTGTACATAGAAGTCACGAAGCTTGAGAATGAGAAGAATTCACGCAGAATTGAGTCTAGGATTTCTATCGACGCTTCACTTGATTCCATTTGGAATATCTTGACTGATTATGAAAGGTTGGCTGATTTCATTCCTGGTCTTGCCCTCAGTAAATTGATCCAAAAAGGTCCCAATTTTGCTCGACTCTTGCAGATTGGAGAGCAGAACTTGGCATTTGGGTTAAAATTTGATGCTAAAGGAGTTATAGATTGTTTTGAGAAAGAATTGGAGACTCTTCCATCTGGTATGAAGCGTGACATAGACTTCAAGATGATTGAAGGGGATTTTCAGCTCTTCGAAGGAAAATGGTCTATTTTGCAGACTTTCAGCGATGGAAGTTGTGAGGACTCTCCGGTTCGAGAAATTAACACGACTCTTTCATACATTGTTGATGTTAAGCCGAAGATGTGGTTGCCCGTTCGGCTGATAGAGGGTAGACTTTGCAATGAGATAAAAAAGAACCTTAAATCCGTAAGGGGTGAAGCTCAGAAAGCTACTGACAGAACTGTGAATGCAAATCAATTTGAATGA

Protein sequence

>Msa1412740

MRAIPVSTQTFLLPLQPSPPASISTLFFSHPPFHFTPSPKSCSLNINFTPSLYRASKHNPTTLNDTDDDSGTLLVTEDDEVEDSESLVEDGVYIEVTKLENEKNSRRIESRISIDASLDSIWNILTDYERLADFIPGLALSKLIQKGPNFARLLQIGEQNLAFGLKFDAKGVIDCFEKELETLPSGMKRDIDFKMIEGDFQLFEGKWSILQTFSDGSCEDSPVREINTTLSYIVDVKPKMWLPVRLIEGRLCNEIKKNLKSVRGEAQKATDRTVNANQFE*